data_PRDCC_000204 # _chem_comp.id PRD_000204 _chem_comp.name Vancomycin _chem_comp.formula "C66 H75 Cl2 N9 O24" _chem_comp.formula_weight 1449.254 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_000204 N1 N1 N 0 1 N N N 10.127 8.826 -4.030 -10.264 -3.311 -1.066 MLU 1 N polymer 1 1 1 ? ? ? PRD_000204 C1 C1 C 0 1 N N N 10.446 10.141 -4.639 -11.393 -2.399 -1.292 MLU 1 CN polymer 1 1 2 ? ? ? PRD_000204 C2 C2 C 0 1 N N R 8.858 8.812 -3.244 -9.016 -2.746 -1.596 MLU 1 CA polymer 1 1 3 ? ? ? PRD_000204 C3 C3 C 0 1 N N N 7.715 9.246 -4.189 -8.372 -1.878 -0.546 MLU 1 C polymer 1 1 4 ? ? ? PRD_000204 O1 O1 O 0 1 N N N 7.547 8.688 -5.252 -8.592 -2.083 0.629 MLU 1 O polymer 1 1 5 ? ? ? PRD_000204 C4 C4 C 0 1 N N N 8.552 7.426 -2.726 -8.062 -3.881 -1.974 MLU 1 CB polymer 1 1 6 ? ? ? PRD_000204 C5 C5 C 0 1 N N N 9.587 6.788 -1.780 -8.673 -4.703 -3.111 MLU 1 CG polymer 1 1 7 ? ? ? PRD_000204 C6 C6 C 0 1 N N N 9.125 5.395 -1.392 -8.781 -3.836 -4.367 MLU 1 CD1 polymer 1 1 8 ? ? ? PRD_000204 C7 C7 C 0 1 N N N 9.835 7.620 -0.583 -7.782 -5.912 -3.402 MLU 1 CD2 polymer 1 1 9 ? ? ? PRD_000204 N2 N2 N 0 1 N N N 6.894 10.223 -3.742 -7.552 -0.873 -0.913 OMZ 2 N polymer 1 1 10 ? ? ? PRD_000204 C8 C8 C 0 1 N N R 5.824 10.725 -4.588 -6.925 -0.029 0.108 OMZ 2 CA polymer 1 1 11 ? ? ? PRD_000204 C9 C9 C 0 1 N N N 4.491 9.963 -4.459 -5.664 -0.692 0.595 OMZ 2 C polymer 1 1 12 ? ? ? PRD_000204 O2 O2 O 0 1 N N N 3.547 10.291 -5.161 -4.888 -1.136 -0.225 OMZ 2 O polymer 1 1 13 ? ? ? PRD_000204 C10 C10 C 0 1 N N R 5.544 12.254 -4.376 -6.636 1.349 -0.485 OMZ 2 CB polymer 1 1 14 ? ? ? PRD_000204 O3 O3 O 0 1 N N N 6.731 13.006 -4.505 -6.399 1.226 -1.888 OMZ 2 OC polymer 1 1 15 ? ? ? PRD_000204 C11 C11 C 0 1 Y N N 4.868 12.532 -3.066 -5.430 1.939 0.193 OMZ 2 CG polymer 1 1 16 ? ? ? PRD_000204 C12 C12 C 0 1 Y N N 3.489 12.760 -3.038 -4.301 2.243 -0.541 OMZ 2 CD1 polymer 1 1 17 ? ? ? PRD_000204 C13 C13 C 0 1 Y N N 5.577 12.564 -1.859 -5.455 2.190 1.555 OMZ 2 CD2 polymer 1 1 18 ? ? ? PRD_000204 C14 C14 C 0 1 Y N N 2.836 12.923 -1.830 -3.190 2.774 0.088 OMZ 2 CE1 polymer 1 1 19 ? ? ? PRD_000204 CL1 CL1 CL 0 0 N N N 1.135 13.234 -1.833 -1.806 3.213 -0.865 OMZ 2 CL polymer 1 1 20 ? ? ? PRD_000204 C15 C15 C 0 1 Y N N 4.904 12.695 -0.669 -4.336 2.695 2.194 OMZ 2 CE2 polymer 1 1 21 ? ? ? PRD_000204 C16 C16 C 0 1 Y N N 3.523 12.845 -0.655 -3.195 2.964 1.464 OMZ 2 CZ polymer 1 1 22 ? ? ? PRD_000204 O4 O4 O 0 1 N N N 2.866 12.894 0.557 -2.030 3.364 2.074 OMZ 2 OH polymer 1 1 23 ? ? ? PRD_000204 N3 N3 N 0 1 N N N 4.449 8.963 -3.584 -5.400 -0.778 1.908 ASN 3 N polymer 1 1 24 ? ? ? PRD_000204 C17 C17 C 0 1 N N S 3.334 8.009 -3.566 -4.422 -1.672 2.501 ASN 3 CA polymer 1 1 25 ? ? ? PRD_000204 C18 C18 C 0 1 N N N 2.302 8.294 -2.468 -3.000 -1.290 2.199 ASN 3 C polymer 1 1 26 ? ? ? PRD_000204 O5 O5 O 0 1 N N N 1.165 8.692 -2.806 -2.706 -0.857 1.111 ASN 3 O polymer 1 1 27 ? ? ? PRD_000204 C19 C19 C 0 1 N N N 3.841 6.575 -3.629 -4.673 -3.109 2.044 ASN 3 CB polymer 1 1 28 ? ? ? PRD_000204 C20 C20 C 0 1 N N N 4.943 6.227 -2.632 -6.002 -3.580 2.575 ASN 3 CG polymer 1 1 29 ? ? ? PRD_000204 O6 O6 O 0 1 N N N 5.227 6.979 -1.683 -6.682 -2.839 3.252 ASN 3 OD1 polymer 1 1 30 ? ? ? PRD_000204 N4 N4 N 0 1 N N N 5.555 5.076 -2.861 -6.436 -4.826 2.297 ASN 3 ND2 polymer 1 1 31 ? ? ? PRD_000204 N5 N5 N 0 1 N N N 2.669 8.100 -1.216 -2.059 -1.439 3.157 GHP 4 N polymer 1 1 32 ? ? ? PRD_000204 C21 C21 C 0 1 N N R 1.695 8.107 -0.115 -0.632 -1.254 2.875 GHP 4 CA polymer 1 1 33 ? ? ? PRD_000204 C22 C22 C 0 1 N N N 1.887 6.862 0.723 -0.189 -2.319 1.903 GHP 4 C polymer 1 1 34 ? ? ? PRD_000204 O7 O7 O 0 1 N N N 2.988 6.455 1.041 -0.914 -2.612 0.977 GHP 4 O polymer 1 1 35 ? ? ? PRD_000204 C23 C23 C 0 1 Y N N 1.720 9.379 0.737 -0.403 0.107 2.273 GHP 4 C1 polymer 1 1 36 ? ? ? PRD_000204 C24 C24 C 0 1 Y N N 1.139 9.408 1.973 0.725 0.337 1.507 GHP 4 C2 polymer 1 1 37 ? ? ? PRD_000204 C25 C25 C 0 1 Y N N 1.145 10.574 2.737 0.919 1.577 0.920 GHP 4 C3 polymer 1 1 38 ? ? ? PRD_000204 C26 C26 C 0 1 Y N N 1.693 11.737 2.232 0.060 2.631 1.167 GHP 4 C4 polymer 1 1 39 ? ? ? PRD_000204 O8 O8 O 0 1 N N N 1.794 12.903 3.004 0.324 3.875 0.683 GHP 4 O4 polymer 1 1 40 ? ? ? PRD_000204 C27 C27 C 0 1 Y N N 2.275 11.709 0.977 -1.089 2.377 1.901 GHP 4 C5 polymer 1 1 41 ? ? ? PRD_000204 C28 C28 C 0 1 Y N N 2.290 10.550 0.247 -1.310 1.131 2.469 GHP 4 C6 polymer 1 1 42 ? ? ? PRD_000204 N6 N6 N 0 1 N N N 0.734 6.293 1.150 0.984 -2.964 2.018 GHP 5 N polymer 1 1 43 ? ? ? PRD_000204 C29 C29 C 0 1 N N R 0.718 5.365 2.242 1.371 -3.995 1.063 GHP 5 CA polymer 1 1 44 ? ? ? PRD_000204 C30 C30 C 0 1 N N N -0.686 5.468 2.895 1.749 -3.383 -0.278 GHP 5 C polymer 1 1 45 ? ? ? PRD_000204 O9 O9 O 0 1 N N N -1.628 5.852 2.205 2.055 -2.215 -0.322 GHP 5 O polymer 1 1 46 ? ? ? PRD_000204 C31 C31 C 0 1 Y N N 0.930 3.872 1.977 2.620 -4.720 1.510 GHP 5 C1 polymer 1 1 47 ? ? ? PRD_000204 C32 C32 C 0 1 Y N N 1.938 3.204 2.649 3.838 -4.102 1.302 GHP 5 C2 polymer 1 1 48 ? ? ? PRD_000204 C33 C33 C 0 1 Y N N 2.017 1.808 2.682 5.035 -4.764 1.527 GHP 5 C3 polymer 1 1 49 ? ? ? PRD_000204 C34 C34 C 0 1 Y N N 1.043 1.086 1.989 4.970 -6.060 2.085 GHP 5 C4 polymer 1 1 50 ? ? ? PRD_000204 O10 O10 O 0 1 N N N 1.089 -0.286 2.062 6.088 -6.800 2.289 GHP 5 O4 polymer 1 1 51 ? ? ? PRD_000204 C35 C35 C 0 1 Y N N 0.080 1.751 1.263 3.740 -6.620 2.403 GHP 5 C5 polymer 1 1 52 ? ? ? PRD_000204 C36 C36 C 0 1 Y N N 0.018 3.128 1.238 2.563 -5.960 2.103 GHP 5 C6 polymer 1 1 53 ? ? ? PRD_000204 N7 N7 N 0 1 N N N -0.841 5.066 4.156 1.766 -4.184 -1.353 OMY 6 N polymer 1 1 54 ? ? ? PRD_000204 C37 C37 C 0 1 N N S 0.153 4.642 5.068 2.311 -3.892 -2.665 OMY 6 CA polymer 1 1 55 ? ? ? PRD_000204 O11 O11 O 0 1 N N N 0.644 10.625 4.037 1.936 1.713 0.007 OMY 6 OCZ polymer 1 1 56 ? ? ? PRD_000204 C38 C38 C 0 1 Y N N -0.746 8.966 5.056 0.638 0.041 -1.070 OMY 6 CE2 polymer 1 1 57 ? ? ? PRD_000204 C39 C39 C 0 1 Y N N 1.622 8.643 5.053 2.925 0.351 -1.716 OMY 6 CE1 polymer 1 1 58 ? ? ? PRD_000204 C40 C40 C 0 1 Y N N 0.519 9.416 4.702 1.854 0.700 -0.915 OMY 6 CZ polymer 1 1 59 ? ? ? PRD_000204 C41 C41 C 0 1 Y N N 0.211 6.945 5.959 1.653 -1.494 -2.595 OMY 6 CG polymer 1 1 60 ? ? ? PRD_000204 C42 C42 C 0 1 Y N N -0.899 7.756 5.699 0.537 -1.063 -1.890 OMY 6 CD2 polymer 1 1 61 ? ? ? PRD_000204 C43 C43 C 0 1 Y N N 1.487 7.428 5.657 2.817 -0.752 -2.548 OMY 6 CD1 polymer 1 1 62 ? ? ? PRD_000204 C44 C44 C 0 1 N N R 0.072 5.496 6.406 1.563 -2.770 -3.384 OMY 6 CB polymer 1 1 63 ? ? ? PRD_000204 CL2 CL2 CL 0 0 N N N 3.250 9.214 4.691 4.396 1.271 -1.660 OMY 6 CL polymer 1 1 64 ? ? ? PRD_000204 O12 O12 O 0 1 N N N -0.998 2.532 5.187 4.331 -3.164 -3.584 OMY 6 O polymer 1 1 65 ? ? ? PRD_000204 C45 C45 C 0 1 N N N 0.071 3.128 5.320 3.787 -3.572 -2.577 OMY 6 C polymer 1 1 66 ? ? ? PRD_000204 O13 O13 O 0 1 N N N -1.150 5.269 7.029 2.106 -2.579 -4.691 OMY 6 ODE polymer 1 1 67 ? ? ? PRD_000204 N8 N8 N 0 1 N N N 1.230 2.520 5.592 4.459 -3.752 -1.439 3FG 7 N polymer 1 1 68 ? ? ? PRD_000204 O14 O14 O 0 1 N N N 4.706 1.291 1.808 7.317 -4.941 3.193 3FG 7 OD1 polymer 1 1 69 ? ? ? PRD_000204 C46 C46 C 0 1 Y N N 4.329 0.915 3.056 7.454 -4.410 1.949 3FG 7 CD1 polymer 1 1 70 ? ? ? PRD_000204 C47 C47 C 0 1 Y N N 3.042 1.139 3.548 6.346 -4.223 1.110 3FG 7 CG1 polymer 1 1 71 ? ? ? PRD_000204 C48 C48 C 0 1 Y N N 5.301 0.282 3.852 8.728 -4.080 1.524 3FG 7 CZ polymer 1 1 72 ? ? ? PRD_000204 C49 C49 C 0 1 Y N N 5.003 -0.095 5.140 8.911 -3.513 0.275 3FG 7 CD2 polymer 1 1 73 ? ? ? PRD_000204 O15 O15 O 0 1 N Y N 5.881 -0.668 5.984 10.157 -3.214 -0.172 3FG 7 OD2 polymer 1 1 74 ? ? ? PRD_000204 C50 C50 C 0 1 Y N N 3.708 0.139 5.646 7.805 -3.228 -0.514 3FG 7 CG2 polymer 1 1 75 ? ? ? PRD_000204 C51 C51 C 0 1 Y N N 2.747 0.764 4.868 6.522 -3.490 -0.071 3FG 7 CB polymer 1 1 76 ? ? ? PRD_000204 C52 C52 C 0 1 N N S 1.363 1.079 5.448 5.375 -2.850 -0.797 3FG 7 CA polymer 1 1 77 ? ? ? PRD_000204 C53 C53 C 0 1 N N N 1.094 0.328 6.804 5.888 -1.810 -1.759 3FG 7 C polymer 1 1 78 ? ? ? PRD_000204 O16 O16 O 0 1 N N N 0.845 -0.905 6.648 6.013 -0.663 -1.398 3FG 7 O polymer 1 1 79 ? ? ? PRD_000204 O17 O17 O 0 1 N Y N 1.168 0.946 7.841 6.207 -2.157 -3.016 3FG 7 OXT polymer 1 1 80 ? ? ? PRD_000204 C54 C54 C 0 1 N N R 0.764 14.592 4.282 1.441 6.019 0.719 BGC 1 C2 polymer 2 2 81 ? ? ? PRD_000204 C55 C55 C 0 1 N N S -0.486 15.382 4.561 2.311 6.930 1.590 BGC 1 C3 polymer 2 2 82 ? ? ? PRD_000204 C56 C56 C 0 1 N N S -0.969 15.992 3.213 1.610 7.155 2.934 BGC 1 C4 polymer 2 2 83 ? ? ? PRD_000204 C57 C57 C 0 1 N N R -1.043 14.883 2.149 1.345 5.800 3.595 BGC 1 C5 polymer 2 2 84 ? ? ? PRD_000204 C58 C58 C 0 1 N N N -1.348 15.417 0.692 0.592 6.012 4.910 BGC 1 C6 polymer 2 2 85 ? ? ? PRD_000204 C59 C59 C 0 1 N N R 0.571 13.575 3.231 1.181 4.708 1.466 BGC 1 C1 polymer 2 2 86 ? ? ? PRD_000204 O18 O18 O 0 1 N N N 1.176 13.981 5.521 2.117 5.743 -0.509 BGC 1 O2 polymer 2 2 87 ? ? ? PRD_000204 O19 O19 O 0 1 N N N -0.274 16.407 5.506 2.497 8.185 0.932 BGC 1 O3 polymer 2 2 88 ? ? ? PRD_000204 O20 O20 O 0 1 N N N -2.284 16.523 3.362 2.447 7.944 3.782 BGC 1 O4 polymer 2 2 89 ? ? ? PRD_000204 O21 O21 O 0 1 N N N 0.194 14.213 2.047 0.557 4.990 2.720 BGC 1 O5 polymer 2 2 90 ? ? ? PRD_000204 O22 O22 O 0 1 N N N -0.508 16.424 0.309 0.446 4.760 5.583 BGC 1 O6 polymer 2 2 91 ? ? ? PRD_000204 C60 C60 C 0 1 N N R 2.253 14.596 6.183 1.966 6.764 -1.497 RER 2 C1 polymer 2 2 92 ? ? ? PRD_000204 C61 C61 C 0 1 N N N 2.244 14.030 7.577 2.943 6.509 -2.648 RER 2 C2 polymer 2 2 93 ? ? ? PRD_000204 C62 C62 C 0 1 N N S 2.888 12.659 7.642 2.604 5.169 -3.308 RER 2 C3 polymer 2 2 94 ? ? ? PRD_000204 N9 N9 N 0 1 N N N 3.219 12.389 9.093 3.488 4.951 -4.461 RER 2 N3 polymer 2 2 95 ? ? ? PRD_000204 C63 C63 C 0 1 N N N 1.970 11.543 7.234 2.794 4.037 -2.296 RER 2 C3A polymer 2 2 96 ? ? ? PRD_000204 C64 C64 C 0 1 N N S 4.193 12.609 6.834 1.147 5.198 -3.779 RER 2 C4 polymer 2 2 97 ? ? ? PRD_000204 O23 O23 O 0 1 N N N 5.008 13.627 7.569 0.986 6.213 -4.772 RER 2 O4 polymer 2 2 98 ? ? ? PRD_000204 C65 C65 C 0 1 N N S 3.916 13.074 5.409 0.239 5.504 -2.584 RER 2 C5 polymer 2 2 99 ? ? ? PRD_000204 O24 O24 O 0 1 N N N 3.432 14.412 5.431 0.628 6.748 -1.998 RER 2 O5 polymer 2 2 100 ? ? ? PRD_000204 C66 C66 C 0 1 N N N 5.169 13.066 4.519 -1.213 5.595 -3.057 RER 2 C5A polymer 2 2 101 ? ? ? PRD_000204 H1 H1 H 0 1 N N N 10.050 8.150 -4.763 -10.171 -3.536 -0.087 MLU 1 H polymer 1 1 102 ? ? ? PRD_000204 H2 H2 H 0 0 N N N 11.391 10.067 -5.198 -12.317 -2.878 -0.969 MLU 1 HCN1 polymer 1 1 103 ? ? ? PRD_000204 H3 H3 H 0 0 N N N 9.637 10.434 -5.324 -11.240 -1.483 -0.722 MLU 1 HCN2 polymer 1 1 104 ? ? ? PRD_000204 H4 H4 H 0 0 N N N 10.547 10.897 -3.847 -11.459 -2.159 -2.353 MLU 1 HCN3 polymer 1 1 105 ? ? ? PRD_000204 H5 H5 H 0 1 N N N 8.926 9.519 -2.404 -9.235 -2.146 -2.480 MLU 1 HA polymer 1 1 106 ? ? ? PRD_000204 H6 H6 H 0 1 N N N 7.596 7.478 -2.185 -7.110 -3.462 -2.300 MLU 1 HB2 polymer 1 1 107 ? ? ? PRD_000204 H7 H7 H 0 1 N N N 8.445 6.762 -3.597 -7.900 -4.523 -1.108 MLU 1 HB3 polymer 1 1 108 ? ? ? PRD_000204 H8 H8 H 0 1 N N N 10.531 6.689 -2.336 -9.666 -5.045 -2.819 MLU 1 HG polymer 1 1 109 ? ? ? PRD_000204 H9 H9 H 0 0 N N N 9.863 4.938 -0.716 -7.788 -3.493 -4.659 MLU 1 HD11 polymer 1 1 110 ? ? ? PRD_000204 H10 H10 H 0 0 N N N 8.152 5.460 -0.882 -9.216 -4.421 -5.176 MLU 1 HD12 polymer 1 1 111 ? ? ? PRD_000204 H11 H11 H 0 0 N N N 9.024 4.777 -2.296 -9.416 -2.974 -4.160 MLU 1 HD13 polymer 1 1 112 ? ? ? PRD_000204 H12 H12 H 0 0 N N N 10.578 7.126 0.060 -7.775 -6.575 -2.536 MLU 1 HD21 polymer 1 1 113 ? ? ? PRD_000204 H13 H13 H 0 0 N N N 10.216 8.604 -0.893 -8.169 -6.450 -4.268 MLU 1 HD22 polymer 1 1 114 ? ? ? PRD_000204 H14 H14 H 0 0 N N N 8.896 7.749 -0.025 -6.766 -5.574 -3.609 MLU 1 HD23 polymer 1 1 115 ? ? ? PRD_000204 H15 H15 H 0 1 N N N 7.024 10.602 -2.826 -7.376 -0.709 -1.853 OMZ 2 H polymer 1 1 116 ? ? ? PRD_000204 H16 H16 H 0 1 N N N 6.148 10.614 -5.633 -7.612 0.083 0.947 OMZ 2 HA polymer 1 1 117 ? ? ? PRD_000204 H17 H17 H 0 1 N N N 4.850 12.559 -5.174 -7.495 2.003 -0.320 OMZ 2 HB polymer 1 1 118 ? ? ? PRD_000204 H18 H18 H 0 1 N N N 6.539 13.927 -4.373 -6.209 2.064 -2.330 OMZ 2 HC polymer 1 1 119 ? ? ? PRD_000204 H19 H19 H 0 1 N N N 2.932 12.809 -3.962 -4.264 2.061 -1.604 OMZ 2 HD1 polymer 1 1 120 ? ? ? PRD_000204 H20 H20 H 0 1 N N N 6.654 12.486 -1.864 -6.358 2.003 2.115 OMZ 2 HD2 polymer 1 1 121 ? ? ? PRD_000204 H21 H21 H 0 1 N N N 5.452 12.681 0.262 -4.355 2.882 3.257 OMZ 2 HE2 polymer 1 1 122 ? ? ? PRD_000204 H22 H22 H 0 1 N N N 5.193 8.859 -2.924 -5.919 -0.197 2.505 ASN 3 H polymer 1 1 123 ? ? ? PRD_000204 H23 H23 H 0 1 N N N 2.794 8.164 -4.512 -4.552 -1.638 3.595 ASN 3 HA polymer 1 1 124 ? ? ? PRD_000204 H24 H24 H 0 1 N N N 2.989 5.905 -3.441 -4.682 -3.148 0.955 ASN 3 HB2 polymer 1 1 125 ? ? ? PRD_000204 H25 H25 H 0 1 N N N 4.231 6.397 -4.642 -3.881 -3.755 2.424 ASN 3 HB3 polymer 1 1 126 ? ? ? PRD_000204 H26 H26 H 0 0 N N N 6.289 4.770 -2.254 -5.892 -5.419 1.755 ASN 3 HD21 polymer 1 1 127 ? ? ? PRD_000204 H27 H27 H 0 0 N N N 5.284 4.512 -3.641 -7.291 -5.129 2.639 ASN 3 HD22 polymer 1 1 128 ? ? ? PRD_000204 H28 H28 H 0 1 N N N 3.635 7.944 -1.010 -2.341 -1.672 4.062 GHP 4 H polymer 1 1 129 ? ? ? PRD_000204 H29 H29 H 0 1 N N N 0.691 8.043 -0.561 -0.067 -1.350 3.799 GHP 4 HA polymer 1 1 130 ? ? ? PRD_000204 H30 H30 H 0 1 N N N 0.669 8.517 2.363 1.458 -0.447 1.378 GHP 4 HC2 polymer 1 1 131 ? ? ? PRD_000204 H31 H31 H 0 1 N N N 2.754 10.545 -0.728 -2.192 0.962 3.071 GHP 4 H6 polymer 1 1 132 ? ? ? PRD_000204 H32 H32 H 0 1 N N N -0.125 6.526 0.693 1.577 -2.741 2.750 GHP 5 H polymer 1 1 133 ? ? ? PRD_000204 H33 H33 H 0 1 N N N 1.457 5.681 2.993 0.564 -4.707 0.922 GHP 5 HA polymer 1 1 134 ? ? ? PRD_000204 H34 H34 H 0 1 N N N 2.690 3.781 3.166 3.835 -3.063 1.004 GHP 5 HC2 polymer 1 1 135 ? ? ? PRD_000204 H35 H35 H 0 1 N N N 0.378 -0.655 1.551 6.435 -6.749 3.190 GHP 5 HO4 polymer 1 1 136 ? ? ? PRD_000204 H36 H36 H 0 1 N N N -0.644 1.180 0.700 3.707 -7.578 2.906 GHP 5 H5 polymer 1 1 137 ? ? ? PRD_000204 H37 H37 H 0 1 N N N -0.736 3.626 0.647 1.611 -6.416 2.333 GHP 5 H6 polymer 1 1 138 ? ? ? PRD_000204 H38 H38 H 0 1 N N N -1.780 5.064 4.501 1.354 -5.073 -1.236 OMY 6 H polymer 1 1 139 ? ? ? PRD_000204 H39 H39 H 0 1 N N N 1.141 4.843 4.629 2.214 -4.806 -3.279 OMY 6 HA polymer 1 1 140 ? ? ? PRD_000204 H40 H40 H 0 1 N N N -1.614 9.566 4.827 -0.243 0.385 -0.551 OMY 6 HE2 polymer 1 1 141 ? ? ? PRD_000204 H41 H41 H 0 1 N N N -1.883 7.432 6.004 -0.398 -1.592 -1.980 OMY 6 HD2 polymer 1 1 142 ? ? ? PRD_000204 H42 H42 H 0 1 N N N 2.361 6.842 5.901 3.642 -1.018 -3.191 OMY 6 HD1 polymer 1 1 143 ? ? ? PRD_000204 H43 H43 H 0 1 N N N 0.917 5.224 7.055 0.507 -3.055 -3.478 OMY 6 HB polymer 1 1 144 ? ? ? PRD_000204 H44 H44 H 0 1 N N N -1.206 4.359 7.295 1.673 -1.879 -5.199 OMY 6 HDE polymer 1 1 145 ? ? ? PRD_000204 H45 H45 H 0 1 N N N 2.013 3.061 5.898 4.304 -4.617 -0.989 3FG 7 H polymer 1 1 146 ? ? ? PRD_000204 H46 H46 H 0 1 N N N 0.611 0.727 4.727 4.807 -2.277 -0.036 3FG 7 HA polymer 1 1 147 ? ? ? PRD_000204 H47 H47 H 0 1 N N N 5.614 1.051 1.665 7.087 -4.294 3.874 3FG 7 HD1 polymer 1 1 148 ? ? ? PRD_000204 H48 H48 H 0 1 N N N 6.285 0.092 3.450 9.573 -4.256 2.170 3FG 7 HZ polymer 1 1 149 ? ? ? PRD_000204 H49 H49 H 0 1 N Y N 5.455 -0.841 6.816 10.583 -3.934 -0.658 3FG 7 HD2 polymer 1 1 150 ? ? ? PRD_000204 H50 H50 H 0 1 N N N 3.463 -0.172 6.651 8.019 -2.867 -1.509 3FG 7 HG2 polymer 1 1 151 ? ? ? PRD_000204 H51 H51 H 0 1 N N N 1.007 0.360 8.571 6.532 -1.454 -3.596 3FG 7 HXT polymer 1 1 152 ? ? ? PRD_000204 H52 H52 H 0 1 N N N 1.545 15.292 3.951 0.491 6.513 0.510 BGC 1 H2 polymer 2 2 153 ? ? ? PRD_000204 H53 H53 H 0 1 N N N -1.265 14.694 4.922 3.279 6.458 1.758 BGC 1 H3 polymer 2 2 154 ? ? ? PRD_000204 H54 H54 H 0 1 N N N -0.260 16.768 2.889 0.665 7.672 2.770 BGC 1 H4 polymer 2 2 155 ? ? ? PRD_000204 H55 H55 H 0 1 N N N -1.840 14.178 2.430 2.293 5.301 3.796 BGC 1 H5 polymer 2 2 156 ? ? ? PRD_000204 H56 H56 H 0 1 N N N -1.242 14.583 -0.017 1.151 6.702 5.541 BGC 1 H61 polymer 2 2 157 ? ? ? PRD_000204 H57 H57 H 0 1 N N N -2.382 15.792 0.665 -0.394 6.429 4.701 BGC 1 H62 polymer 2 2 158 ? ? ? PRD_000204 H58 H58 H 0 1 N N N -0.203 12.862 3.549 2.128 4.195 1.638 BGC 1 H1 polymer 2 2 159 ? ? ? PRD_000204 H59 H59 H 0 1 N Y N -1.086 16.878 5.651 3.040 8.812 1.429 BGC 1 HO3 polymer 2 2 160 ? ? ? PRD_000204 H60 H60 H 0 1 N Y N -2.572 16.893 2.536 2.065 8.126 4.652 BGC 1 HO4 polymer 2 2 161 ? ? ? PRD_000204 H61 H61 H 0 1 N Y N -0.733 16.708 -0.569 -0.023 4.820 6.426 BGC 1 HO6 polymer 2 2 162 ? ? ? PRD_000204 H62 H62 H 0 1 N N N 2.050 15.674 6.263 2.176 7.736 -1.051 RER 2 H1 polymer 2 2 163 ? ? ? PRD_000204 H63 H63 H 0 0 N N N 2.796 14.712 8.240 2.857 7.309 -3.383 RER 2 H21C polymer 2 2 164 ? ? ? PRD_000204 H64 H64 H 0 0 N N N 1.202 13.949 7.920 3.962 6.477 -2.261 RER 2 H22C polymer 2 2 165 ? ? ? PRD_000204 H65 H65 H 0 0 N N N 3.647 11.489 9.176 4.456 4.935 -4.176 RER 2 H31N polymer 2 2 166 ? ? ? PRD_000204 H66 H66 H 0 0 N N N 3.849 13.090 9.427 3.241 4.104 -4.951 RER 2 H32N polymer 2 2 167 ? ? ? PRD_000204 H67 H67 H 0 0 N N N 2.504 10.584 7.306 2.014 4.094 -1.537 RER 2 H3A1 polymer 2 2 168 ? ? ? PRD_000204 H68 H68 H 0 0 N N N 1.095 11.526 7.900 2.734 3.077 -2.809 RER 2 H3A2 polymer 2 2 169 ? ? ? PRD_000204 H69 H69 H 0 0 N N N 1.639 11.701 6.197 3.771 4.135 -1.821 RER 2 H3A3 polymer 2 2 170 ? ? ? PRD_000204 H70 H70 H 0 1 N N N 4.650 11.609 6.859 0.881 4.229 -4.201 RER 2 H4 polymer 2 2 171 ? ? ? PRD_000204 H71 H71 H 0 1 N N N 5.864 13.700 7.164 0.085 6.287 -5.116 RER 2 HO4 polymer 2 2 172 ? ? ? PRD_000204 H72 H72 H 0 1 N N N 3.164 12.408 4.961 0.332 4.709 -1.844 RER 2 H5 polymer 2 2 173 ? ? ? PRD_000204 H73 H73 H 0 0 N N N 4.904 13.410 3.508 -1.477 4.686 -3.598 RER 2 H5A1 polymer 2 2 174 ? ? ? PRD_000204 H74 H74 H 0 0 N N N 5.927 13.738 4.948 -1.870 5.707 -2.194 RER 2 H5A2 polymer 2 2 175 ? ? ? PRD_000204 H75 H75 H 0 0 N N N 5.573 12.044 4.464 -1.328 6.455 -3.716 RER 2 H5A3 polymer 2 2 176 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_000204 N1 C1 SING N N 1 PRD_000204 N1 C2 SING N N 2 PRD_000204 C2 C3 SING N N 3 PRD_000204 C2 C4 SING N N 4 PRD_000204 C3 O1 DOUB N N 5 PRD_000204 C4 C5 SING N N 6 PRD_000204 C5 C6 SING N N 7 PRD_000204 C5 C7 SING N N 8 PRD_000204 N1 H1 SING N N 9 PRD_000204 C1 H2 SING N N 10 PRD_000204 C1 H3 SING N N 11 PRD_000204 C1 H4 SING N N 12 PRD_000204 C2 H5 SING N N 13 PRD_000204 C4 H6 SING N N 14 PRD_000204 C4 H7 SING N N 15 PRD_000204 C5 H8 SING N N 16 PRD_000204 C6 H9 SING N N 17 PRD_000204 C6 H10 SING N N 18 PRD_000204 C6 H11 SING N N 19 PRD_000204 C7 H12 SING N N 20 PRD_000204 C7 H13 SING N N 21 PRD_000204 C7 H14 SING N N 22 PRD_000204 N2 C8 SING N N 23 PRD_000204 C8 C9 SING N N 24 PRD_000204 C8 C10 SING N N 25 PRD_000204 C9 O2 DOUB N N 26 PRD_000204 CL1 C14 SING N N 27 PRD_000204 C10 O3 SING N N 28 PRD_000204 C10 C11 SING N N 29 PRD_000204 C11 C12 DOUB Y N 30 PRD_000204 C11 C13 SING Y N 31 PRD_000204 C12 C14 SING Y N 32 PRD_000204 C13 C15 DOUB Y N 33 PRD_000204 C14 C16 DOUB Y N 34 PRD_000204 C15 C16 SING Y N 35 PRD_000204 C16 O4 SING N N 36 PRD_000204 N2 H15 SING N N 37 PRD_000204 C8 H16 SING N N 38 PRD_000204 C10 H17 SING N N 39 PRD_000204 O3 H18 SING N N 40 PRD_000204 C12 H19 SING N N 41 PRD_000204 C13 H20 SING N N 42 PRD_000204 C15 H21 SING N N 43 PRD_000204 N3 C17 SING N N 44 PRD_000204 N3 H22 SING N N 45 PRD_000204 C17 C18 SING N N 46 PRD_000204 C17 C19 SING N N 47 PRD_000204 C17 H23 SING N N 48 PRD_000204 C18 O5 DOUB N N 49 PRD_000204 C19 C20 SING N N 50 PRD_000204 C19 H24 SING N N 51 PRD_000204 C19 H25 SING N N 52 PRD_000204 C20 O6 DOUB N N 53 PRD_000204 C20 N4 SING N N 54 PRD_000204 N4 H26 SING N N 55 PRD_000204 N4 H27 SING N N 56 PRD_000204 N5 C21 SING N N 57 PRD_000204 N5 H28 SING N N 58 PRD_000204 C21 C22 SING N N 59 PRD_000204 C21 C23 SING N N 60 PRD_000204 C21 H29 SING N N 61 PRD_000204 C22 O7 DOUB N N 62 PRD_000204 C23 C24 DOUB Y N 63 PRD_000204 C23 C28 SING Y N 64 PRD_000204 C24 C25 SING Y N 65 PRD_000204 C24 H30 SING N N 66 PRD_000204 C25 C26 DOUB Y N 67 PRD_000204 C26 O8 SING N N 68 PRD_000204 C26 C27 SING Y N 69 PRD_000204 C27 C28 DOUB Y N 70 PRD_000204 C28 H31 SING N N 71 PRD_000204 N6 C29 SING N N 72 PRD_000204 N6 H32 SING N N 73 PRD_000204 C29 C30 SING N N 74 PRD_000204 C29 C31 SING N N 75 PRD_000204 C29 H33 SING N N 76 PRD_000204 C30 O9 DOUB N N 77 PRD_000204 C31 C32 DOUB Y N 78 PRD_000204 C31 C36 SING Y N 79 PRD_000204 C32 C33 SING Y N 80 PRD_000204 C32 H34 SING N N 81 PRD_000204 C33 C34 DOUB Y N 82 PRD_000204 C34 O10 SING N N 83 PRD_000204 C34 C35 SING Y N 84 PRD_000204 O10 H35 SING N N 85 PRD_000204 C35 C36 DOUB Y N 86 PRD_000204 C35 H36 SING N N 87 PRD_000204 C36 H37 SING N N 88 PRD_000204 N7 C37 SING N N 89 PRD_000204 O11 C40 SING N N 90 PRD_000204 C40 C38 SING Y N 91 PRD_000204 C40 C39 DOUB Y N 92 PRD_000204 C38 C42 DOUB Y N 93 PRD_000204 C42 C41 SING Y N 94 PRD_000204 C41 C43 DOUB Y N 95 PRD_000204 C41 C44 SING N N 96 PRD_000204 C43 C39 SING Y N 97 PRD_000204 C39 CL2 SING N N 98 PRD_000204 C45 O12 DOUB N N 99 PRD_000204 C45 C37 SING N N 100 PRD_000204 C37 C44 SING N N 101 PRD_000204 C44 O13 SING N N 102 PRD_000204 N7 H38 SING N N 103 PRD_000204 C37 H39 SING N N 104 PRD_000204 C38 H40 SING N N 105 PRD_000204 C42 H41 SING N N 106 PRD_000204 C43 H42 SING N N 107 PRD_000204 C44 H43 SING N N 108 PRD_000204 O13 H44 SING N N 109 PRD_000204 N8 C52 SING N N 110 PRD_000204 O14 C46 SING N N 111 PRD_000204 C46 C47 SING Y N 112 PRD_000204 C46 C48 DOUB Y N 113 PRD_000204 C47 C51 DOUB Y N 114 PRD_000204 C48 C49 SING Y N 115 PRD_000204 C49 O15 SING N N 116 PRD_000204 C49 C50 DOUB Y N 117 PRD_000204 C50 C51 SING Y N 118 PRD_000204 C51 C52 SING N N 119 PRD_000204 C52 C53 SING N N 120 PRD_000204 C53 O16 DOUB N N 121 PRD_000204 C53 O17 SING N N 122 PRD_000204 N8 H45 SING N N 123 PRD_000204 C52 H46 SING N N 124 PRD_000204 O14 H47 SING N N 125 PRD_000204 C48 H48 SING N N 126 PRD_000204 O15 H49 SING N N 127 PRD_000204 C50 H50 SING N N 128 PRD_000204 O17 H51 SING N N 129 PRD_000204 C54 C55 SING N N 130 PRD_000204 C54 C59 SING N N 131 PRD_000204 C54 O18 SING N N 132 PRD_000204 C54 H52 SING N N 133 PRD_000204 C55 C56 SING N N 134 PRD_000204 C55 O19 SING N N 135 PRD_000204 C55 H53 SING N N 136 PRD_000204 C56 C57 SING N N 137 PRD_000204 C56 O20 SING N N 138 PRD_000204 C56 H54 SING N N 139 PRD_000204 C57 C58 SING N N 140 PRD_000204 C57 O21 SING N N 141 PRD_000204 C57 H55 SING N N 142 PRD_000204 C58 O22 SING N N 143 PRD_000204 C58 H56 SING N N 144 PRD_000204 C58 H57 SING N N 145 PRD_000204 C59 O21 SING N N 146 PRD_000204 C59 H58 SING N N 147 PRD_000204 O19 H59 SING N N 148 PRD_000204 O20 H60 SING N N 149 PRD_000204 O22 H61 SING N N 150 PRD_000204 C60 C61 SING N N 151 PRD_000204 C60 O24 SING N N 152 PRD_000204 C61 C62 SING N N 153 PRD_000204 C62 N9 SING N N 154 PRD_000204 C62 C63 SING N N 155 PRD_000204 C62 C64 SING N N 156 PRD_000204 C64 O23 SING N N 157 PRD_000204 C64 C65 SING N N 158 PRD_000204 C65 O24 SING N N 159 PRD_000204 C65 C66 SING N N 160 PRD_000204 C60 H62 SING N N 161 PRD_000204 C61 H63 SING N N 162 PRD_000204 C61 H64 SING N N 163 PRD_000204 N9 H65 SING N N 164 PRD_000204 N9 H66 SING N N 165 PRD_000204 C63 H67 SING N N 166 PRD_000204 C63 H68 SING N N 167 PRD_000204 C63 H69 SING N N 168 PRD_000204 C64 H70 SING N N 169 PRD_000204 O23 H71 SING N N 170 PRD_000204 C65 H72 SING N N 171 PRD_000204 C66 H73 SING N N 172 PRD_000204 C66 H74 SING N N 173 PRD_000204 C66 H75 SING N N 174 PRD_000204 C3 N2 SING N N 175 PRD_000204 C9 N3 SING N N 176 PRD_000204 O4 C27 SING N N 177 PRD_000204 C18 N5 SING N N 178 PRD_000204 C22 N6 SING N N 179 PRD_000204 C25 O11 SING N N 180 PRD_000204 C30 N7 SING N N 181 PRD_000204 C33 C47 SING N N 182 PRD_000204 C45 N8 SING N N 183 PRD_000204 O18 C60 SING N N 184 PRD_000204 O8 C59 SING N N 185 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_000204 SMILES ACDLabs 12.01 "O=C(O)C1NC(=O)C2NC(=O)C(NC(=O)C3NC(=O)C(CC(N)=O)NC(=O)C(NC(=O)C(CC(C)C)NC)C(O)c4ccc(Oc5cc3cc(Oc3ccc(cc3Cl)C2O)c5OC2OC(CO)C(O)C(O)C2OC2CC(C)(N)C(O)C(C)O2)c(Cl)c4)c2ccc(O)c(c2)c2c(O)cc(O)cc21" PRD_000204 InChI InChI 1.03 "InChI=1S/C66H75Cl2N9O24/c1-23(2)12-34(71-5)58(88)76-49-51(83)26-7-10-38(32(67)14-26)97-40-16-28-17-41(55(40)101-65-56(54(86)53(85)42(22-78)99-65)100-44-21-66(4,70)57(87)24(3)96-44)98-39-11-8-27(15-33(39)68)52(84)50-63(93)75-48(64(94)95)31-18-29(79)19-37(81)45(31)30-13-25(6-9-36(30)80)46(60(90)77-50)74-61(91)47(28)73-59(89)35(20-43(69)82)72-62(49)92/h6-11,13-19,23-24,34-35,42,44,46-54,56-57,65,71,78-81,83-87H,12,20-22,70H2,1-5H3,(H2,69,82)(H,72,92)(H,73,89)(H,74,91)(H,75,93)(H,76,88)(H,77,90)(H,94,95)/t24-,34+,35-,42+,44-,46+,47+,48-,49+,50-,51+,52+,53+,54-,56+,57+,65-,66-/m0/s1" PRD_000204 InChIKey InChI 1.03 MYPYJXKWCTUITO-LYRMYLQWSA-N PRD_000204 SMILES_CANONICAL CACTVS 3.385 "CN[C@H](CC(C)C)C(=O)N[C@@H]1[C@H](O)c2ccc(Oc3cc4cc(Oc5ccc(cc5Cl)[C@@H](O)[C@@H]6NC(=O)[C@H](NC(=O)[C@@H]4NC(=O)[C@H](CC(N)=O)NC1=O)c7ccc(O)c(c7)c8c(O)cc(O)cc8[C@H](NC6=O)C(O)=O)c3O[C@@H]9O[C@H](CO)[C@@H](O)[C@H](O)[C@H]9O[C@H]%10C[C@](C)(N)[C@H](O)[C@H](C)O%10)c(Cl)c2" PRD_000204 SMILES CACTVS 3.385 "CN[CH](CC(C)C)C(=O)N[CH]1[CH](O)c2ccc(Oc3cc4cc(Oc5ccc(cc5Cl)[CH](O)[CH]6NC(=O)[CH](NC(=O)[CH]4NC(=O)[CH](CC(N)=O)NC1=O)c7ccc(O)c(c7)c8c(O)cc(O)cc8[CH](NC6=O)C(O)=O)c3O[CH]9O[CH](CO)[CH](O)[CH](O)[CH]9O[CH]%10C[C](C)(N)[CH](O)[CH](C)O%10)c(Cl)c2" PRD_000204 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H]([C@@](C[C@@H](O1)O[C@@H]2[C@H]([C@@H]([C@H](O[C@H]2Oc3c4cc5cc3Oc6ccc(cc6Cl)[C@H]([C@H](C(=O)N[C@H](C(=O)N[C@H]5C(=O)N[C@@H]7c8ccc(c(c8)-c9c(cc(cc9O)O)[C@H](NC(=O)[C@H]([C@@H](c1ccc(c(c1)Cl)O4)O)NC7=O)C(=O)O)O)CC(=O)N)NC(=O)[C@@H](CC(C)C)NC)O)CO)O)O)(C)N)O" PRD_000204 SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(CC(O1)OC2C(C(C(OC2Oc3c4cc5cc3Oc6ccc(cc6Cl)C(C(C(=O)NC(C(=O)NC5C(=O)NC7c8ccc(c(c8)-c9c(cc(cc9O)O)C(NC(=O)C(C(c1ccc(c(c1)Cl)O4)O)NC7=O)C(=O)O)O)CC(=O)N)NC(=O)C(CC(C)C)NC)O)CO)O)O)(C)N)O" # _pdbx_chem_comp_identifier.comp_id PRD_000204 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "(1S,2R,18R,19R,22S,25R,28R,33P,40S)-48-{[(2S,3R,4S,5S,6R)-3-{[(2S,4S,5S,6S)-4-amino-5-hydroxy-4,6-dimethyloxan-2-yl]oxy}-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-22-(2-amino-2-oxoethyl)-5,15-dichloro-2,18,32,35,37-pentahydroxy-19-{[(2R)-4-methyl-2-(methylamino)pentanoyl]amino}-20,23,26,42,44-pentaoxo-7,13-dioxa-21,24,27,41,43-pentaazaoctacyclo[26.14.2.2~3,6~.2~14,17~.1~8,12~.1~29,33~.0~10,25~.0~34,39~]pentaconta-3,5,8(48),9,11,14,16,29(45),30,32,34,36,38,46,49-pentadecaene-40-carboxylic acid (non-preferred name)" #