data_PRDCC_000350 # _chem_comp.id PRD_000350 _chem_comp.name SUCCINYL-ALA-ALA-PRO-LYS _chem_comp.formula "C21 H36 N5 O8" _chem_comp.formula_weight 486.539 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_000350 C1 C1 C 0 1 N N N ? ? ? 10.246 -0.768 -0.249 SIN 1 C1 polymer 1 1 1 ? ? ? PRD_000350 O1 O1 O 0 1 N N N ? ? ? 10.401 0.142 0.529 SIN 1 O1 polymer 1 1 2 ? ? ? PRD_000350 O2 O2 O 0 1 N Y N ? ? ? 11.312 -1.387 -0.780 SIN 1 O2 polymer 1 1 3 ? ? ? PRD_000350 C2 C2 C 0 1 N N N ? ? ? 8.854 -1.214 -0.618 SIN 1 C2 polymer 1 1 4 ? ? ? PRD_000350 C3 C3 C 0 1 N N N ? ? ? 7.829 -0.355 0.125 SIN 1 C3 polymer 1 1 5 ? ? ? PRD_000350 C4 C4 C 0 1 N N N 7.165 74.078 10.849 6.438 -0.801 -0.244 SIN 1 C4 polymer 1 1 6 ? ? ? PRD_000350 O3 O3 O 0 1 N N N 7.299 72.924 11.194 6.281 -1.715 -1.025 SIN 1 O3 polymer 1 1 7 ? ? ? PRD_000350 N1 N1 N 0 1 N N N 7.752 75.188 10.421 5.367 -0.183 0.294 ALA 2 N polymer 1 1 8 ? ? ? PRD_000350 C5 C5 C 0 1 N N S 9.179 74.831 10.221 4.015 -0.616 -0.065 ALA 2 CA polymer 1 1 9 ? ? ? PRD_000350 C6 C6 C 0 1 N N N 9.831 74.411 11.527 3.053 0.527 0.131 ALA 2 C polymer 1 1 10 ? ? ? PRD_000350 O4 O4 O 0 1 N N N 9.717 75.099 12.529 3.457 1.598 0.531 ALA 2 O polymer 1 1 11 ? ? ? PRD_000350 C7 C7 C 0 1 N N N 9.929 75.978 9.649 3.602 -1.789 0.826 ALA 2 CB polymer 1 1 12 ? ? ? PRD_000350 N2 N2 N 0 1 N N N 10.521 73.289 11.496 1.743 0.359 -0.139 ALA 3 N polymer 1 1 13 ? ? ? PRD_000350 C8 C8 C 0 1 N N S 11.189 72.801 12.675 0.807 1.470 0.052 ALA 3 CA polymer 1 1 14 ? ? ? PRD_000350 C9 C9 C 0 1 N N N 12.390 71.939 12.264 -0.578 0.926 0.289 ALA 3 C polymer 1 1 15 ? ? ? PRD_000350 O5 O5 O 0 1 N N N 12.363 71.245 11.247 -0.880 -0.169 -0.135 ALA 3 O polymer 1 1 16 ? ? ? PRD_000350 C10 C10 C 0 1 N N N 10.266 71.962 13.454 0.801 2.352 -1.199 ALA 3 CB polymer 1 1 17 ? ? ? PRD_000350 N3 N3 N 0 1 N N N 13.422 71.904 13.112 -1.480 1.656 0.974 PRO 4 N polymer 1 1 18 ? ? ? PRD_000350 C11 C11 C 0 1 N N S 14.556 70.993 12.858 -2.828 1.211 1.359 PRO 4 CA polymer 1 1 19 ? ? ? PRD_000350 C12 C12 C 0 1 N N N 14.143 69.524 12.880 -3.622 0.857 0.128 PRO 4 C polymer 1 1 20 ? ? ? PRD_000350 O6 O6 O 0 1 N N N 13.209 69.154 13.611 -3.118 0.963 -0.970 PRO 4 O polymer 1 1 21 ? ? ? PRD_000350 C13 C13 C 0 1 N N N 15.515 71.292 13.994 -3.503 2.384 2.100 PRO 4 CB polymer 1 1 22 ? ? ? PRD_000350 C14 C14 C 0 1 N N N 15.097 72.619 14.472 -2.708 3.617 1.596 PRO 4 CG polymer 1 1 23 ? ? ? PRD_000350 C15 C15 C 0 1 N N N 13.587 72.712 14.342 -1.278 3.031 1.466 PRO 4 CD polymer 1 1 24 ? ? ? PRD_000350 N4 N4 N 0 1 N N N 14.844 68.665 12.137 -4.892 0.422 0.248 LYS 5 N polymer 1 1 25 ? ? ? PRD_000350 C16 C16 C 0 1 N N S 14.574 67.248 12.114 -5.664 0.078 -0.949 LYS 5 CA polymer 1 1 26 ? ? ? PRD_000350 C17 C17 C 0 1 N N N 15.725 66.417 12.676 -6.297 1.323 -1.514 LYS 5 C polymer 1 1 27 ? ? ? PRD_000350 O7 O7 O 0 1 N N N 15.516 65.285 13.081 -6.120 2.389 -0.973 LYS 5 O polymer 1 1 28 ? ? ? PRD_000350 C18 C18 C 0 1 N N N 14.402 66.802 10.687 -6.757 -0.927 -0.579 LYS 5 CB polymer 1 1 29 ? ? ? PRD_000350 C19 C19 C 0 1 N N N 13.146 67.321 10.091 -6.113 -2.237 -0.122 LYS 5 CG polymer 1 1 30 ? ? ? PRD_000350 C20 C20 C 0 1 N N N 13.115 66.752 8.732 -7.206 -3.241 0.248 LYS 5 CD polymer 1 1 31 ? ? ? PRD_000350 C21 C21 C 0 1 N N N 11.977 67.168 7.971 -6.562 -4.552 0.704 LYS 5 CE polymer 1 1 32 ? ? ? PRD_000350 N5 N5 N 1 1 N N N 12.147 66.774 6.521 -7.611 -5.516 1.059 LYS 5 NZ polymer 1 1 33 ? ? ? PRD_000350 O8 O8 O 0 1 N Y N ? ? ? -7.056 1.249 -2.618 LYS 5 OXT polymer 1 1 34 ? ? ? PRD_000350 H1 H1 H 0 1 N Y N ? ? ? 12.184 -1.069 -0.510 SIN 1 HO2 polymer 1 1 35 ? ? ? PRD_000350 H2 H2 H 0 1 N N N ? ? ? 8.710 -1.103 -1.693 SIN 1 H21 polymer 1 1 36 ? ? ? PRD_000350 H3 H3 H 0 1 N N N ? ? ? 8.722 -2.260 -0.341 SIN 1 H22 polymer 1 1 37 ? ? ? PRD_000350 H4 H4 H 0 1 N N N ? ? ? 7.973 -0.467 1.200 SIN 1 H31 polymer 1 1 38 ? ? ? PRD_000350 H5 H5 H 0 1 N N N ? ? ? 7.962 0.690 -0.153 SIN 1 H32 polymer 1 1 39 ? ? ? PRD_000350 H6 H6 H 0 1 N N N 7.323 76.078 10.266 5.493 0.548 0.918 ALA 2 H polymer 1 1 40 ? ? ? PRD_000350 H7 H7 H 0 1 N N N 9.237 73.986 9.519 3.999 -0.930 -1.109 ALA 2 HA polymer 1 1 41 ? ? ? PRD_000350 H8 H8 H 0 1 N N N 10.982 75.694 9.508 3.618 -1.476 1.870 ALA 2 HB1 polymer 1 1 42 ? ? ? PRD_000350 H9 H9 H 0 1 N N N 9.491 76.255 8.679 2.595 -2.112 0.559 ALA 2 HB2 polymer 1 1 43 ? ? ? PRD_000350 H10 H10 H 0 1 N N N 9.869 76.835 10.336 4.298 -2.616 0.684 ALA 2 HB3 polymer 1 1 44 ? ? ? PRD_000350 H11 H11 H 0 1 N N N 10.582 72.770 10.643 1.419 -0.498 -0.459 ALA 3 H polymer 1 1 45 ? ? ? PRD_000350 H12 H12 H 0 1 N N N 11.543 73.641 13.291 1.118 2.062 0.913 ALA 3 HA polymer 1 1 46 ? ? ? PRD_000350 H13 H13 H 0 1 N N N 10.778 71.590 14.354 0.407 1.784 -2.042 ALA 3 HB1 polymer 1 1 47 ? ? ? PRD_000350 H14 H14 H 0 1 N N N 9.390 72.558 13.750 0.174 3.226 -1.024 ALA 3 HB2 polymer 1 1 48 ? ? ? PRD_000350 H15 H15 H 0 1 N N N 9.939 71.110 12.840 1.819 2.674 -1.421 ALA 3 HB3 polymer 1 1 49 ? ? ? PRD_000350 H16 H16 H 0 1 N N N 15.031 71.231 11.895 -2.758 0.344 2.017 PRO 4 HA polymer 1 1 50 ? ? ? PRD_000350 H17 H17 H 0 1 N N N 15.421 70.541 14.793 -4.554 2.462 1.822 PRO 4 HB2 polymer 1 1 51 ? ? ? PRD_000350 H18 H18 H 0 1 N N N 16.554 71.316 13.633 -3.397 2.271 3.179 PRO 4 HB3 polymer 1 1 52 ? ? ? PRD_000350 H19 H19 H 0 1 N N N 15.389 72.745 15.525 -3.085 3.957 0.632 PRO 4 HG2 polymer 1 1 53 ? ? ? PRD_000350 H20 H20 H 0 1 N N N 15.573 73.402 13.863 -2.733 4.424 2.329 PRO 4 HG3 polymer 1 1 54 ? ? ? PRD_000350 H21 H21 H 0 1 N N N 13.246 73.749 14.206 -0.781 3.017 2.436 PRO 4 HD2 polymer 1 1 55 ? ? ? PRD_000350 H22 H22 H 0 1 N N N 13.069 72.266 15.204 -0.696 3.609 0.748 PRO 4 HD3 polymer 1 1 56 ? ? ? PRD_000350 H23 H23 H 0 1 N N N 15.589 69.019 11.572 -5.295 0.337 1.126 LYS 5 H polymer 1 1 57 ? ? ? PRD_000350 H24 H24 H 0 1 N N N 13.658 67.025 12.680 -5.002 -0.364 -1.694 LYS 5 HA polymer 1 1 58 ? ? ? PRD_000350 H25 H25 H 0 1 N N N 15.254 67.168 10.095 -7.366 -0.520 0.229 LYS 5 HB2 polymer 1 1 59 ? ? ? PRD_000350 H26 H26 H 0 1 N N N 14.381 65.703 10.658 -7.387 -1.115 -1.448 LYS 5 HB3 polymer 1 1 60 ? ? ? PRD_000350 H27 H27 H 0 1 N N N 12.274 66.987 10.672 -5.504 -2.643 -0.930 LYS 5 HG2 polymer 1 1 61 ? ? ? PRD_000350 H28 H28 H 0 1 N N N 13.161 68.420 10.051 -5.483 -2.049 0.747 LYS 5 HG3 polymer 1 1 62 ? ? ? PRD_000350 H29 H29 H 0 1 N N N 14.025 67.067 8.200 -7.815 -2.835 1.056 LYS 5 HD2 polymer 1 1 63 ? ? ? PRD_000350 H30 H30 H 0 1 N N N 13.099 65.655 8.813 -7.836 -3.430 -0.622 LYS 5 HD3 polymer 1 1 64 ? ? ? PRD_000350 H31 H31 H 0 1 N N N 11.074 66.687 8.375 -5.953 -4.958 -0.104 LYS 5 HE2 polymer 1 1 65 ? ? ? PRD_000350 H32 H32 H 0 1 N N N 11.873 68.261 8.041 -5.932 -4.363 1.574 LYS 5 HE3 polymer 1 1 66 ? ? ? PRD_000350 H33 H33 H 0 1 N N N 11.347 67.069 5.999 -8.194 -5.690 0.255 LYS 5 HZ1 polymer 1 1 67 ? ? ? PRD_000350 H34 H34 H 0 1 N N N 12.966 67.211 6.151 -7.186 -6.380 1.360 LYS 5 HZ2 polymer 1 1 68 ? ? ? PRD_000350 H35 H35 H 0 1 N N N 12.240 65.781 6.454 -8.175 -5.140 1.807 LYS 5 HZ3 polymer 1 1 69 ? ? ? PRD_000350 H36 H36 H 0 1 N Y N ? ? ? -7.440 2.074 -2.943 LYS 5 HXT polymer 1 1 70 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_000350 C1 O1 DOUB N N 1 PRD_000350 C1 O2 SING N N 2 PRD_000350 C1 C2 SING N N 3 PRD_000350 O2 H1 SING N N 4 PRD_000350 C2 C3 SING N N 5 PRD_000350 C2 H2 SING N N 6 PRD_000350 C2 H3 SING N N 7 PRD_000350 C3 C4 SING N N 8 PRD_000350 C3 H4 SING N N 9 PRD_000350 C3 H5 SING N N 10 PRD_000350 C4 O3 DOUB N N 11 PRD_000350 N1 C5 SING N N 12 PRD_000350 N1 H6 SING N N 13 PRD_000350 C5 C6 SING N N 14 PRD_000350 C5 C7 SING N N 15 PRD_000350 C5 H7 SING N N 16 PRD_000350 C6 O4 DOUB N N 17 PRD_000350 C7 H8 SING N N 18 PRD_000350 C7 H9 SING N N 19 PRD_000350 C7 H10 SING N N 20 PRD_000350 N2 C8 SING N N 21 PRD_000350 N2 H11 SING N N 22 PRD_000350 C8 C9 SING N N 23 PRD_000350 C8 C10 SING N N 24 PRD_000350 C8 H12 SING N N 25 PRD_000350 C9 O5 DOUB N N 26 PRD_000350 C10 H13 SING N N 27 PRD_000350 C10 H14 SING N N 28 PRD_000350 C10 H15 SING N N 29 PRD_000350 N3 C11 SING N N 30 PRD_000350 N3 C15 SING N N 31 PRD_000350 C11 C12 SING N N 32 PRD_000350 C11 C13 SING N N 33 PRD_000350 C11 H16 SING N N 34 PRD_000350 C12 O6 DOUB N N 35 PRD_000350 C13 C14 SING N N 36 PRD_000350 C13 H17 SING N N 37 PRD_000350 C13 H18 SING N N 38 PRD_000350 C14 C15 SING N N 39 PRD_000350 C14 H19 SING N N 40 PRD_000350 C14 H20 SING N N 41 PRD_000350 C15 H21 SING N N 42 PRD_000350 C15 H22 SING N N 43 PRD_000350 N4 C16 SING N N 44 PRD_000350 N4 H23 SING N N 45 PRD_000350 C16 C17 SING N N 46 PRD_000350 C16 C18 SING N N 47 PRD_000350 C16 H24 SING N N 48 PRD_000350 C17 O7 DOUB N N 49 PRD_000350 C17 O8 SING N N 50 PRD_000350 C18 C19 SING N N 51 PRD_000350 C18 H25 SING N N 52 PRD_000350 C18 H26 SING N N 53 PRD_000350 C19 C20 SING N N 54 PRD_000350 C19 H27 SING N N 55 PRD_000350 C19 H28 SING N N 56 PRD_000350 C20 C21 SING N N 57 PRD_000350 C20 H29 SING N N 58 PRD_000350 C20 H30 SING N N 59 PRD_000350 C21 N5 SING N N 60 PRD_000350 C21 H31 SING N N 61 PRD_000350 C21 H32 SING N N 62 PRD_000350 N5 H33 SING N N 63 PRD_000350 N5 H34 SING N N 64 PRD_000350 N5 H35 SING N N 65 PRD_000350 O8 H36 SING N N 66 PRD_000350 C4 N1 SING N N 67 PRD_000350 C6 N2 SING N N 68 PRD_000350 C9 N3 SING N N 69 PRD_000350 C12 N4 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_000350 SMILES ACDLabs 12.01 "O=C(NC(C(=O)O)CCCC[NH3+])C1N(C(=O)C(NC(=O)C(NC(=O)CCC(=O)O)C)C)CCC1" PRD_000350 InChI InChI 1.03 "InChI=1S/C21H35N5O8/c1-12(23-16(27)8-9-17(28)29)18(30)24-13(2)20(32)26-11-5-7-15(26)19(31)25-14(21(33)34)6-3-4-10-22/h12-15H,3-11,22H2,1-2H3,(H,23,27)(H,24,30)(H,25,31)(H,28,29)(H,33,34)/p+1" PRD_000350 InChIKey InChI 1.03 GKSGBRRPQPPRLY-UHFFFAOYSA-O PRD_000350 SMILES_CANONICAL CACTVS 3.370 "C[C@H](NC(=O)CCC(O)=O)C(=O)N[C@@H](C)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCCC[NH3+])C(O)=O" PRD_000350 SMILES CACTVS 3.370 "C[CH](NC(=O)CCC(O)=O)C(=O)N[CH](C)C(=O)N1CCC[CH]1C(=O)N[CH](CCCC[NH3+])C(O)=O" PRD_000350 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H](C(=O)N[C@@H](C)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCCC[NH3+])C(=O)O)NC(=O)CCC(=O)O" PRD_000350 SMILES "OpenEye OEToolkits" 1.7.6 "CC(C(=O)NC(C)C(=O)N1CCCC1C(=O)NC(CCCC[NH3+])C(=O)O)NC(=O)CCC(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_000350 "SYSTEMATIC NAME" ACDLabs 12.01 "N-(3-carboxypropanoyl)-L-alanyl-L-alanyl-L-prolyl-6-ammonio-L-norleucine" PRD_000350 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(5S)-6-oxidanyl-6-oxidanylidene-5-[[(2S)-1-[(2S)-2-[[(2S)-2-[(4-oxidanyl-4-oxidanylidene-butanoyl)amino]propanoyl]amino]propanoyl]pyrrolidin-2-yl]carbonylamino]hexyl]azanium" #