data_PRDCC_000453 # _chem_comp.id PRD_000453 _chem_comp.name "N-[3-(1H-benzimidazol-1-yl)propanoyl]glycyl-L-alanyl-L-alaninamide" _chem_comp.formula "C18 H24 N6 O4" _chem_comp.formula_weight 388.421 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_000453 C1 C1 C 0 1 Y N N 30.771 90.989 45.397 -6.309 -1.736 0.464 EXB 1 C2 polymer 1 1 1 ? ? ? PRD_000453 C2 C2 C 0 1 Y N N 31.336 91.325 48.144 -8.597 -1.125 -0.999 EXB 1 C5 polymer 1 1 2 ? ? ? PRD_000453 C3 C3 C 0 1 Y N N 30.182 91.873 47.577 -8.345 -2.412 -0.616 EXB 1 C4 polymer 1 1 3 ? ? ? PRD_000453 C4 C4 C 0 1 Y N N 29.916 91.708 46.218 -7.206 -2.723 0.114 EXB 1 C3 polymer 1 1 4 ? ? ? PRD_000453 C5 C5 C 0 1 Y N N 32.189 90.598 47.318 -7.702 -0.108 -0.655 EXB 1 C6 polymer 1 1 5 ? ? ? PRD_000453 C6 C6 C 0 1 N N N 32.545 89.436 42.901 -3.443 0.669 0.030 EXB 1 C11 polymer 1 1 6 ? ? ? PRD_000453 C7 C7 C 0 1 N N N 33.307 89.161 44.136 -4.610 0.951 0.979 EXB 1 C10 polymer 1 1 7 ? ? ? PRD_000453 N1 N1 N 0 1 Y N N 32.946 89.691 45.454 -5.876 0.769 0.264 EXB 1 N9 polymer 1 1 8 ? ? ? PRD_000453 C8 C8 C 0 1 Y N N 31.930 90.441 45.951 -6.549 -0.423 0.083 EXB 1 C1 polymer 1 1 9 ? ? ? PRD_000453 C9 C9 C 0 1 Y N N 33.790 89.408 46.463 -6.606 1.742 -0.344 EXB 1 C8 polymer 1 1 10 ? ? ? PRD_000453 N2 N2 N 0 1 Y N N 33.345 89.950 47.594 -7.674 1.230 -0.882 EXB 1 N7 polymer 1 1 11 ? ? ? PRD_000453 C10 C10 C 0 1 N N N 33.249 89.440 41.746 -2.141 0.856 0.765 EXB 1 C12 polymer 1 1 12 ? ? ? PRD_000453 O1 O1 O 0 1 N N N 34.474 89.274 41.764 -2.146 1.184 1.933 EXB 1 O polymer 1 1 13 ? ? ? PRD_000453 N3 N3 N 0 1 N N N 32.582 89.647 40.613 -0.971 0.660 0.125 GLY 2 N polymer 1 1 14 ? ? ? PRD_000453 C11 C11 C 0 1 N N N 33.109 89.358 39.417 0.294 0.843 0.840 GLY 2 CA polymer 1 1 15 ? ? ? PRD_000453 C12 C12 C 0 1 N N N 32.568 88.408 38.631 1.443 0.564 -0.094 GLY 2 C polymer 1 1 16 ? ? ? PRD_000453 O2 O2 O 0 1 N N N 31.585 87.779 39.001 1.227 0.245 -1.244 GLY 2 O polymer 1 1 17 ? ? ? PRD_000453 N4 N4 N 0 1 N N N 33.099 88.169 37.434 2.712 0.670 0.348 ALA 3 N polymer 1 1 18 ? ? ? PRD_000453 C13 C13 C 0 1 N N S 32.217 87.756 36.352 3.829 0.400 -0.561 ALA 3 CA polymer 1 1 19 ? ? ? PRD_000453 C14 C14 C 0 1 N N N 31.902 86.288 36.438 5.037 -0.017 0.239 ALA 3 C polymer 1 1 20 ? ? ? PRD_000453 O3 O3 O 0 1 N N N 32.669 85.527 37.012 4.971 -0.082 1.448 ALA 3 O polymer 1 1 21 ? ? ? PRD_000453 C15 C15 C 0 1 N N N 32.836 88.074 34.991 4.156 1.665 -1.357 ALA 3 CB polymer 1 1 22 ? ? ? PRD_000453 N5 N5 N 0 1 N N N 30.763 85.879 35.865 6.190 -0.318 -0.390 ALA 4 N polymer 1 1 23 ? ? ? PRD_000453 C16 C16 C 0 1 N N S 30.344 84.480 35.863 7.364 -0.723 0.387 ALA 4 CA polymer 1 1 24 ? ? ? PRD_000453 C17 C17 C 0 1 N N N 31.405 83.590 35.286 8.615 -0.414 -0.395 ALA 4 C polymer 1 1 25 ? ? ? PRD_000453 O4 O4 O 0 1 N N N 32.044 83.960 34.308 8.534 0.095 -1.493 ALA 4 O polymer 1 1 26 ? ? ? PRD_000453 C18 C18 C 0 1 N N N 29.094 84.307 35.003 7.296 -2.225 0.667 ALA 4 CB polymer 1 1 27 ? ? ? PRD_000453 N6 N6 N 0 1 N N N 31.590 82.414 35.885 9.824 -0.703 0.126 NH2 5 N polymer 1 1 28 ? ? ? PRD_000453 H1 H1 H 0 1 N N N 30.545 90.855 44.349 -5.427 -1.983 1.035 EXB 1 H2 polymer 1 1 29 ? ? ? PRD_000453 H2 H2 H 0 1 N N N 31.559 91.461 49.192 -9.486 -0.894 -1.567 EXB 1 H5 polymer 1 1 30 ? ? ? PRD_000453 H3 H3 H 0 1 N N N 29.492 92.428 48.195 -9.039 -3.195 -0.883 EXB 1 H4 polymer 1 1 31 ? ? ? PRD_000453 H4 H4 H 0 1 N N N 29.025 92.150 45.796 -7.021 -3.745 0.409 EXB 1 H3 polymer 1 1 32 ? ? ? PRD_000453 H5 H5 H 0 1 N N N 31.763 88.668 42.813 -3.511 -0.356 -0.334 EXB 1 H11 polymer 1 1 33 ? ? ? PRD_000453 H6 H6 H 0 1 N N N 33.313 88.066 44.246 -4.567 0.263 1.823 EXB 1 H10 polymer 1 1 34 ? ? ? PRD_000453 H7 H7 H 0 0 N N N 34.330 89.516 43.941 -4.543 1.977 1.342 EXB 1 H10A polymer 1 1 35 ? ? ? PRD_000453 H8 H8 H 0 1 N N N 34.695 88.827 46.369 -6.338 2.788 -0.375 EXB 1 H8 polymer 1 1 36 ? ? ? PRD_000453 H9 H9 H 0 1 N N N 32.077 90.425 43.010 -3.486 1.357 -0.814 EXB 1 H9 polymer 1 1 37 ? ? ? PRD_000453 H10 H10 H 0 1 N N N 31.659 90.030 40.657 -0.968 0.399 -0.809 GLY 2 H polymer 1 1 38 ? ? ? PRD_000453 H11 H11 H 0 1 N N N 33.094 90.291 38.835 0.362 1.868 1.204 GLY 2 HA2 polymer 1 1 39 ? ? ? PRD_000453 H12 H12 H 0 1 N N N 34.151 89.057 39.599 0.337 0.154 1.684 GLY 2 HA3 polymer 1 1 40 ? ? ? PRD_000453 H13 H13 H 0 1 N N N 34.082 88.271 37.281 2.886 0.926 1.267 ALA 3 H polymer 1 1 41 ? ? ? PRD_000453 H14 H14 H 0 1 N N N 31.273 88.315 36.432 3.554 -0.401 -1.247 ALA 3 HA polymer 1 1 42 ? ? ? PRD_000453 H15 H15 H 0 1 N N N 32.151 87.753 34.192 4.432 2.465 -0.671 ALA 3 HB1 polymer 1 1 43 ? ? ? PRD_000453 H16 H16 H 0 1 N N N 33.010 89.157 34.911 4.988 1.463 -2.033 ALA 3 HB2 polymer 1 1 44 ? ? ? PRD_000453 H17 H17 H 0 1 N N N 33.793 87.541 34.890 3.283 1.966 -1.935 ALA 3 HB3 polymer 1 1 45 ? ? ? PRD_000453 H18 H18 H 0 1 N N N 30.177 86.557 35.422 6.243 -0.266 -1.358 ALA 4 H polymer 1 1 46 ? ? ? PRD_000453 H19 H19 H 0 1 N N N 30.118 84.157 36.890 7.382 -0.177 1.330 ALA 4 HA polymer 1 1 47 ? ? ? PRD_000453 H20 H20 H 0 1 N N N 28.788 83.251 35.009 7.279 -2.771 -0.276 ALA 4 HB1 polymer 1 1 48 ? ? ? PRD_000453 H21 H21 H 0 1 N N N 28.281 84.927 35.409 8.170 -2.527 1.245 ALA 4 HB2 polymer 1 1 49 ? ? ? PRD_000453 H22 H22 H 0 1 N N N 29.313 84.620 33.971 6.392 -2.449 1.233 ALA 4 HB3 polymer 1 1 50 ? ? ? PRD_000453 H23 H23 H 0 1 N N N 32.281 81.780 35.539 9.889 -1.110 1.004 NH2 5 HN1 polymer 1 1 51 ? ? ? PRD_000453 H24 H24 H 0 1 N N N 31.038 82.166 36.681 10.629 -0.504 -0.377 NH2 5 HN2 polymer 1 1 52 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_000453 C1 C4 DOUB Y N 1 PRD_000453 C1 C8 SING Y N 2 PRD_000453 C1 H1 SING N N 3 PRD_000453 C2 C3 DOUB Y N 4 PRD_000453 C2 C5 SING Y N 5 PRD_000453 C2 H2 SING N N 6 PRD_000453 C3 C4 SING Y N 7 PRD_000453 C3 H3 SING N N 8 PRD_000453 C4 H4 SING N N 9 PRD_000453 C5 C8 DOUB Y N 10 PRD_000453 C5 N2 SING Y N 11 PRD_000453 C6 C7 SING N N 12 PRD_000453 C6 C10 SING N N 13 PRD_000453 C6 H5 SING N N 14 PRD_000453 C7 N1 SING N N 15 PRD_000453 C7 H6 SING N N 16 PRD_000453 C7 H7 SING N N 17 PRD_000453 N1 C8 SING Y N 18 PRD_000453 N1 C9 SING Y N 19 PRD_000453 C9 N2 DOUB Y N 20 PRD_000453 C9 H8 SING N N 21 PRD_000453 C10 O1 DOUB N N 22 PRD_000453 C6 H9 SING N N 23 PRD_000453 N3 C11 SING N N 24 PRD_000453 N3 H10 SING N N 25 PRD_000453 C11 C12 SING N N 26 PRD_000453 C11 H11 SING N N 27 PRD_000453 C11 H12 SING N N 28 PRD_000453 C12 O2 DOUB N N 29 PRD_000453 N4 C13 SING N N 30 PRD_000453 N4 H13 SING N N 31 PRD_000453 C13 C14 SING N N 32 PRD_000453 C13 C15 SING N N 33 PRD_000453 C13 H14 SING N N 34 PRD_000453 C14 O3 DOUB N N 35 PRD_000453 C15 H15 SING N N 36 PRD_000453 C15 H16 SING N N 37 PRD_000453 C15 H17 SING N N 38 PRD_000453 N5 C16 SING N N 39 PRD_000453 N5 H18 SING N N 40 PRD_000453 C16 C17 SING N N 41 PRD_000453 C16 C18 SING N N 42 PRD_000453 C16 H19 SING N N 43 PRD_000453 C17 O4 DOUB N N 44 PRD_000453 C18 H20 SING N N 45 PRD_000453 C18 H21 SING N N 46 PRD_000453 C18 H22 SING N N 47 PRD_000453 N6 H23 SING N N 48 PRD_000453 N6 H24 SING N N 49 PRD_000453 C10 N3 SING N N 50 PRD_000453 N6 C17 SING N N 51 PRD_000453 C12 N4 SING N N 52 PRD_000453 C14 N5 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_000453 SMILES ACDLabs 12.01 "O=C(N)C(NC(=O)C(NC(=O)CNC(=O)CCn1c2ccccc2nc1)C)C" PRD_000453 InChI InChI 1.03 "InChI=1S/C18H24N6O4/c1-11(17(19)27)23-18(28)12(2)22-16(26)9-20-15(25)7-8-24-10-21-13-5-3-4-6-14(13)24/h3-6,10-12H,7-9H2,1-2H3,(H2,19,27)(H,20,25)(H,22,26)(H,23,28)" PRD_000453 InChIKey InChI 1.03 XIYSOGRPNKXLBP-UHFFFAOYSA-N PRD_000453 SMILES_CANONICAL CACTVS 3.370 "C[C@H](NC(=O)[C@H](C)NC(=O)CNC(=O)CCn1cnc2ccccc12)C(N)=O" PRD_000453 SMILES CACTVS 3.370 "C[CH](NC(=O)[CH](C)NC(=O)CNC(=O)CCn1cnc2ccccc12)C(N)=O" PRD_000453 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H](C(=O)N)NC(=O)[C@H](C)NC(=O)CNC(=O)CCn1cnc2c1cccc2" PRD_000453 SMILES "OpenEye OEToolkits" 1.7.6 "CC(C(=O)N)NC(=O)C(C)NC(=O)CNC(=O)CCn1cnc2c1cccc2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_000453 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[3-(1H-benzimidazol-1-yl)propanoyl]glycyl-L-alanyl-L-alaninamide" PRD_000453 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-[[(2S)-2-[2-[3-(benzimidazol-1-yl)propanoylamino]ethanoylamino]propanoyl]amino]propanamide" #