data_PRDCC_000913 # _chem_comp.id PRD_000913 _chem_comp.name "M4Z inhibitor" _chem_comp.formula "C24 H39 N7 O6" _chem_comp.formula_weight 521.610 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_000913 C1 C1 C 0 1 Y N N ? ? ? 9.106 0.135 -0.592 02J 1 C4 polymer 1 1 1 ? ? ? PRD_000913 C2 C2 C 0 1 Y N N ? ? ? 9.900 -0.057 0.487 02J 1 C5 polymer 1 1 2 ? ? ? PRD_000913 C3 C3 C 0 1 N N N ? ? ? 11.404 0.022 0.523 02J 1 C6 polymer 1 1 3 ? ? ? PRD_000913 O1 O1 O 0 1 Y N N ? ? ? 9.088 -0.333 1.517 02J 1 O1 polymer 1 1 4 ? ? ? PRD_000913 N1 N1 N 0 1 Y N N ? ? ? 7.925 -0.327 1.187 02J 1 N polymer 1 1 5 ? ? ? PRD_000913 C4 C4 C 0 1 Y N N ? ? ? 7.789 -0.047 -0.085 02J 1 CA polymer 1 1 6 ? ? ? PRD_000913 C5 C5 C 0 1 N N N ? ? ? 6.520 0.051 -0.846 02J 1 C polymer 1 1 7 ? ? ? PRD_000913 O2 O2 O 0 1 N N N ? ? ? 6.541 0.311 -2.032 02J 1 O polymer 1 1 8 ? ? ? PRD_000913 N2 N2 N 0 1 N N N -1.942 -20.268 36.473 5.342 -0.150 -0.221 ALA 2 N polymer 1 1 9 ? ? ? PRD_000913 C6 C6 C 0 1 N N S -1.956 -18.817 36.568 4.089 -0.053 -0.973 ALA 2 CA polymer 1 1 10 ? ? ? PRD_000913 C7 C7 C 0 1 N N N -1.149 -18.353 37.752 2.964 0.296 -0.032 ALA 2 C polymer 1 1 11 ? ? ? PRD_000913 O3 O3 O 0 1 N N N -1.221 -18.944 38.817 3.188 0.449 1.150 ALA 2 O polymer 1 1 12 ? ? ? PRD_000913 C8 C8 C 0 1 N N N -3.389 -18.308 36.712 3.793 -1.395 -1.645 ALA 2 CB polymer 1 1 13 ? ? ? PRD_000913 N3 N3 N 0 1 N N N -0.385 -17.273 37.574 1.710 0.437 -0.504 VAL 3 N polymer 1 1 14 ? ? ? PRD_000913 C9 C9 C 0 1 N N S 0.435 -16.717 38.646 0.617 0.776 0.411 VAL 3 CA polymer 1 1 15 ? ? ? PRD_000913 C10 C10 C 0 1 N N N 0.222 -15.231 38.765 -0.689 0.293 -0.165 VAL 3 C polymer 1 1 16 ? ? ? PRD_000913 O4 O4 O 0 1 N N N 0.419 -14.500 37.808 -0.778 0.058 -1.352 VAL 3 O polymer 1 1 17 ? ? ? PRD_000913 C11 C11 C 0 1 N N N 1.879 -16.965 38.209 0.561 2.294 0.599 VAL 3 CB polymer 1 1 18 ? ? ? PRD_000913 C12 C12 C 0 1 N N N 2.855 -16.137 39.035 1.847 2.772 1.276 VAL 3 CG1 polymer 1 1 19 ? ? ? PRD_000913 C13 C13 C 0 1 N N N 2.249 -18.447 38.253 0.421 2.971 -0.766 VAL 3 CG2 polymer 1 1 20 ? ? ? PRD_000913 N4 N4 N 0 1 N N N -0.178 -14.746 39.939 -1.758 0.122 0.638 LEU 4 N polymer 1 1 21 ? ? ? PRD_000913 C14 C14 C 0 1 N N S -0.388 -13.307 40.103 -2.999 -0.435 0.096 LEU 4 CA polymer 1 1 22 ? ? ? PRD_000913 C15 C15 C 0 1 N N N 0.927 -12.576 40.194 -4.164 0.021 0.936 LEU 4 C polymer 1 1 23 ? ? ? PRD_000913 O5 O5 O 0 1 N N N 1.564 -12.515 41.238 -3.975 0.742 1.893 LEU 4 O polymer 1 1 24 ? ? ? PRD_000913 C16 C16 C 0 1 N N N -1.212 -13.156 41.376 -2.924 -1.963 0.116 LEU 4 CB polymer 1 1 25 ? ? ? PRD_000913 C17 C17 C 0 1 N N N -2.678 -13.507 41.103 -1.821 -2.432 -0.834 LEU 4 CG polymer 1 1 26 ? ? ? PRD_000913 C18 C18 C 0 1 N N N -3.583 -12.681 42.001 -1.661 -3.950 -0.721 LEU 4 CD1 polymer 1 1 27 ? ? ? PRD_000913 C19 C19 C 0 1 N N N -3.089 -13.298 39.643 -2.196 -2.065 -2.272 LEU 4 CD2 polymer 1 1 28 ? ? ? PRD_000913 C20 C20 C 0 1 N N N 2.582 -9.831 39.223 -6.708 -0.850 2.621 0JU 5 C polymer 1 1 29 ? ? ? PRD_000913 N5 N5 N 0 1 N N N 3.588 -9.338 39.799 -5.909 -1.838 2.773 0JU 5 NF polymer 1 1 30 ? ? ? PRD_000913 C21 C21 C 0 1 N N S 2.600 -11.301 38.914 -6.547 0.073 1.441 0JU 5 CA polymer 1 1 31 ? ? ? PRD_000913 N6 N6 N 0 1 N N N 1.337 -12.020 39.059 -5.415 -0.371 0.624 0JU 5 N polymer 1 1 32 ? ? ? PRD_000913 C22 C22 C 0 1 N N N 2.880 -11.469 37.428 -7.824 0.051 0.598 0JU 5 CB polymer 1 1 33 ? ? ? PRD_000913 C23 C23 C 0 1 N N N 4.340 -11.808 37.189 -7.710 1.079 -0.529 0JU 5 CG polymer 1 1 34 ? ? ? PRD_000913 C24 C24 C 0 1 N N N 4.475 -12.189 35.740 -8.968 1.057 -1.359 0JU 5 CD polymer 1 1 35 ? ? ? PRD_000913 O6 O6 O 0 1 N N N 3.704 -11.723 34.906 -9.867 0.293 -1.077 0JU 5 OE polymer 1 1 36 ? ? ? PRD_000913 N7 N7 N 0 1 N N N 5.457 -13.045 35.456 -9.093 1.885 -2.415 0JU 5 NE polymer 1 1 37 ? ? ? PRD_000913 H1 H1 H 0 1 N N N ? ? ? 9.403 0.376 -1.602 02J 1 H4 polymer 1 1 38 ? ? ? PRD_000913 H2 H2 H 0 1 N N N ? ? ? 11.709 1.043 0.754 02J 1 H6 polymer 1 1 39 ? ? ? PRD_000913 H3 H3 H 0 1 N N N ? ? ? 11.785 -0.653 1.290 02J 1 H6A polymer 1 1 40 ? ? ? PRD_000913 H4 H4 H 0 1 N N N ? ? ? 11.807 -0.267 -0.448 02J 1 H6B polymer 1 1 41 ? ? ? PRD_000913 H5 H5 H 0 1 N N N -1.964 -21.146 36.951 5.325 -0.358 0.726 ALA 2 H polymer 1 1 42 ? ? ? PRD_000913 H6 H6 H 0 1 N N N -1.523 -18.386 35.654 4.180 0.722 -1.733 ALA 2 HA polymer 1 1 43 ? ? ? PRD_000913 H7 H7 H 0 1 N N N -3.383 -17.210 36.783 2.860 -1.324 -2.205 ALA 2 HB1 polymer 1 1 44 ? ? ? PRD_000913 H8 H8 H 0 1 N N N -3.977 -18.616 35.835 4.606 -1.648 -2.326 ALA 2 HB2 polymer 1 1 45 ? ? ? PRD_000913 H9 H9 H 0 1 N N N -3.839 -18.732 37.622 3.702 -2.171 -0.885 ALA 2 HB3 polymer 1 1 46 ? ? ? PRD_000913 H10 H10 H 0 1 N N N -0.374 -16.831 36.677 1.531 0.315 -1.449 VAL 3 H polymer 1 1 47 ? ? ? PRD_000913 H11 H11 H 0 1 N N N 0.234 -17.217 39.605 0.788 0.297 1.375 VAL 3 HA polymer 1 1 48 ? ? ? PRD_000913 H12 H12 H 0 1 N N N 1.968 -16.634 37.164 -0.295 2.552 1.222 VAL 3 HB polymer 1 1 49 ? ? ? PRD_000913 H13 H13 H 0 0 N N N 3.883 -16.337 38.698 2.692 2.608 0.608 VAL 3 HG11 polymer 1 1 50 ? ? ? PRD_000913 H14 H14 H 0 0 N N N 2.628 -15.068 38.907 1.765 3.835 1.503 VAL 3 HG12 polymer 1 1 51 ? ? ? PRD_000913 H15 H15 H 0 0 N N N 2.758 -16.408 40.097 2.000 2.214 2.200 VAL 3 HG13 polymer 1 1 52 ? ? ? PRD_000913 H16 H16 H 0 0 N N N 3.293 -18.574 37.931 -0.495 2.631 -1.249 VAL 3 HG21 polymer 1 1 53 ? ? ? PRD_000913 H17 H17 H 0 0 N N N 2.133 -18.823 39.280 0.381 4.053 -0.632 VAL 3 HG22 polymer 1 1 54 ? ? ? PRD_000913 H18 H18 H 0 0 N N N 1.587 -19.010 37.579 1.278 2.714 -1.389 VAL 3 HG23 polymer 1 1 55 ? ? ? PRD_000913 H19 H19 H 0 1 N N N -0.335 -15.365 40.708 -1.705 0.368 1.574 LEU 4 H polymer 1 1 56 ? ? ? PRD_000913 H20 H20 H 0 1 N N N -0.965 -12.914 39.253 -3.135 -0.092 -0.930 LEU 4 HA polymer 1 1 57 ? ? ? PRD_000913 H21 H21 H 0 1 N N N -0.815 -13.831 42.148 -2.700 -2.303 1.128 LEU 4 HB2 polymer 1 1 58 ? ? ? PRD_000913 H22 H22 H 0 1 N N N -1.147 -12.116 41.729 -3.880 -2.379 -0.203 LEU 4 HB3 polymer 1 1 59 ? ? ? PRD_000913 H23 H23 H 0 1 N N N -2.826 -14.569 41.350 -0.881 -1.947 -0.569 LEU 4 HG polymer 1 1 60 ? ? ? PRD_000913 H24 H24 H 0 0 N N N -4.633 -12.938 41.800 -2.600 -4.435 -0.987 LEU 4 HD11 polymer 1 1 61 ? ? ? PRD_000913 H25 H25 H 0 0 N N N -3.349 -12.895 43.054 -0.875 -4.284 -1.398 LEU 4 HD12 polymer 1 1 62 ? ? ? PRD_000913 H26 H26 H 0 0 N N N -3.422 -11.612 41.800 -1.394 -4.212 0.303 LEU 4 HD13 polymer 1 1 63 ? ? ? PRD_000913 H27 H27 H 0 0 N N N -4.148 -13.568 39.517 -2.310 -0.984 -2.352 LEU 4 HD21 polymer 1 1 64 ? ? ? PRD_000913 H28 H28 H 0 0 N N N -2.944 -12.243 39.369 -1.410 -2.399 -2.949 LEU 4 HD22 polymer 1 1 65 ? ? ? PRD_000913 H29 H29 H 0 0 N N N -2.470 -13.934 38.993 -3.135 -2.550 -2.537 LEU 4 HD23 polymer 1 1 66 ? ? ? PRD_000913 H30 H30 H 0 1 N Y N 1.734 -9.217 38.960 -7.497 -0.677 3.338 0JU 5 H1 polymer 1 1 67 ? ? ? PRD_000913 H31 H31 H 0 1 N N N 3.483 -8.357 39.962 -6.012 -2.432 3.533 0JU 5 HNF polymer 1 1 68 ? ? ? PRD_000913 H32 H32 H 0 1 N N N 3.392 -11.795 39.496 -6.364 1.088 1.795 0JU 5 HA polymer 1 1 69 ? ? ? PRD_000913 H33 H33 H 0 1 N N N 0.746 -12.098 38.256 -5.566 -0.947 -0.142 0JU 5 H polymer 1 1 70 ? ? ? PRD_000913 H34 H34 H 0 1 N N N 2.638 -10.531 36.907 -7.960 -0.943 0.171 0JU 5 H7 polymer 1 1 71 ? ? ? PRD_000913 H35 H35 H 0 1 N N N 2.252 -12.281 37.032 -8.679 0.295 1.228 0JU 5 H8 polymer 1 1 72 ? ? ? PRD_000913 H36 H36 H 0 1 N N N 4.642 -12.650 37.830 -7.574 2.073 -0.102 0JU 5 H9 polymer 1 1 73 ? ? ? PRD_000913 H37 H37 H 0 1 N N N 4.971 -10.934 37.410 -6.854 0.835 -1.159 0JU 5 H10 polymer 1 1 74 ? ? ? PRD_000913 H38 H38 H 0 1 N N N 5.601 -13.346 34.513 -8.374 2.496 -2.640 0JU 5 H11 polymer 1 1 75 ? ? ? PRD_000913 H39 H39 H 0 1 N N N 6.050 -13.386 36.186 -9.903 1.870 -2.949 0JU 5 H12 polymer 1 1 76 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_000913 C4 C1 SING Y N 1 PRD_000913 C1 C2 DOUB Y N 2 PRD_000913 C1 H1 SING N N 3 PRD_000913 O1 C2 SING Y N 4 PRD_000913 C2 C3 SING N N 5 PRD_000913 C3 H2 SING N N 6 PRD_000913 C3 H3 SING N N 7 PRD_000913 C3 H4 SING N N 8 PRD_000913 N1 O1 SING Y N 9 PRD_000913 C4 N1 DOUB Y N 10 PRD_000913 C5 C4 SING N N 11 PRD_000913 O2 C5 DOUB N N 12 PRD_000913 N2 C6 SING N N 13 PRD_000913 N2 H5 SING N N 14 PRD_000913 C6 C7 SING N N 15 PRD_000913 C6 C8 SING N N 16 PRD_000913 C6 H6 SING N N 17 PRD_000913 C7 O3 DOUB N N 18 PRD_000913 C8 H7 SING N N 19 PRD_000913 C8 H8 SING N N 20 PRD_000913 C8 H9 SING N N 21 PRD_000913 N3 C9 SING N N 22 PRD_000913 N3 H10 SING N N 23 PRD_000913 C9 C10 SING N N 24 PRD_000913 C9 C11 SING N N 25 PRD_000913 C9 H11 SING N N 26 PRD_000913 C10 O4 DOUB N N 27 PRD_000913 C11 C12 SING N N 28 PRD_000913 C11 C13 SING N N 29 PRD_000913 C11 H12 SING N N 30 PRD_000913 C12 H13 SING N N 31 PRD_000913 C12 H14 SING N N 32 PRD_000913 C12 H15 SING N N 33 PRD_000913 C13 H16 SING N N 34 PRD_000913 C13 H17 SING N N 35 PRD_000913 C13 H18 SING N N 36 PRD_000913 N4 C14 SING N N 37 PRD_000913 N4 H19 SING N N 38 PRD_000913 C14 C15 SING N N 39 PRD_000913 C14 C16 SING N N 40 PRD_000913 C14 H20 SING N N 41 PRD_000913 C15 O5 DOUB N N 42 PRD_000913 C16 C17 SING N N 43 PRD_000913 C16 H21 SING N N 44 PRD_000913 C16 H22 SING N N 45 PRD_000913 C17 C18 SING N N 46 PRD_000913 C17 C19 SING N N 47 PRD_000913 C17 H23 SING N N 48 PRD_000913 C18 H24 SING N N 49 PRD_000913 C18 H25 SING N N 50 PRD_000913 C18 H26 SING N N 51 PRD_000913 C19 H27 SING N N 52 PRD_000913 C19 H28 SING N N 53 PRD_000913 C19 H29 SING N N 54 PRD_000913 O6 C24 DOUB N N 55 PRD_000913 N7 C24 SING N N 56 PRD_000913 C24 C23 SING N N 57 PRD_000913 C23 C22 SING N N 58 PRD_000913 C22 C21 SING N N 59 PRD_000913 C21 N6 SING N N 60 PRD_000913 C21 C20 SING N N 61 PRD_000913 C20 N5 DOUB N N 62 PRD_000913 C20 H30 SING N N 63 PRD_000913 N5 H31 SING N N 64 PRD_000913 C21 H32 SING N N 65 PRD_000913 N6 H33 SING N N 66 PRD_000913 C22 H34 SING N N 67 PRD_000913 C22 H35 SING N N 68 PRD_000913 C23 H36 SING N N 69 PRD_000913 C23 H37 SING N N 70 PRD_000913 N7 H38 SING N N 71 PRD_000913 N7 H39 SING N N 72 PRD_000913 C5 N2 SING N N 73 PRD_000913 C7 N3 SING N N 74 PRD_000913 C10 N4 SING N N 75 PRD_000913 C15 N6 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_000913 SMILES ACDLabs 12.01 "O=C(NC(C(=O)NC(C(=O)NC(C(=O)NC(C=[N@H])CCC(=O)N)CC(C)C)C(C)C)C)c1noc(c1)C" PRD_000913 InChI InChI 1.03 "InChI=1S/C24H39N7O6/c1-12(2)9-17(22(34)28-16(11-25)7-8-19(26)32)29-24(36)20(13(3)4)30-21(33)15(6)27-23(35)18-10-14(5)37-31-18/h10-13,15-17,20,25H,7-9H2,1-6H3,(H2,26,32)(H,27,35)(H,28,34)(H,29,36)(H,30,33)/b25-11+/t15-,16+,17-,20+/m0/s1" PRD_000913 InChIKey InChI 1.03 BEDKZMYJXHXMQM-XELNVQSUSA-N PRD_000913 SMILES_CANONICAL CACTVS 3.370 "CC(C)C[C@H](NC(=O)[C@@H](NC(=O)[C@H](C)NC(=O)c1cc(C)on1)C(C)C)C(=O)N[C@@H](CCC(N)=O)C=N" PRD_000913 SMILES CACTVS 3.370 "CC(C)C[CH](NC(=O)[CH](NC(=O)[CH](C)NC(=O)c1cc(C)on1)C(C)C)C(=O)N[CH](CCC(N)=O)C=N" PRD_000913 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1cc(no1)C(=O)N[C@@H](C)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCC(=O)N)C=N" PRD_000913 SMILES "OpenEye OEToolkits" 1.7.6 "Cc1cc(no1)C(=O)NC(C)C(=O)NC(C(C)C)C(=O)NC(CC(C)C)C(=O)NC(CCC(=O)N)C=N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_000913 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(5-methyl-1,2-oxazol-3-yl)carbonyl]-L-alanyl-L-valyl-N-[(2R)-5-amino-1-imino-5-oxopentan-2-yl]-L-leucinamide" PRD_000913 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[(2S)-1-[[(2S)-1-[[(2S)-1-[[(2S)-5-azanyl-1-azanylidene-5-oxidanylidene-pentan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]amino]-3-methyl-1-oxidanylidene-butan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-5-methyl-1,2-oxazole-3-carboxamide" #