data_PRDCC_000924 # _chem_comp.id PRD_000924 _chem_comp.name Ac-DEVD-CMK _chem_comp.formula "C21 H33 Cl N4 O11" _chem_comp.formula_weight 552.960 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_000924 C1 C1 C 0 1 N N N -9.089 6.268 36.969 7.026 -0.691 -0.673 ACE 1 C polymer 1 1 1 ? ? ? PRD_000924 O1 O1 O 0 1 N N N -7.869 6.230 36.889 6.706 -1.587 0.079 ACE 1 O polymer 1 1 2 ? ? ? PRD_000924 C2 C2 C 0 1 N N N -9.725 6.181 38.344 8.126 -0.908 -1.679 ACE 1 CH3 polymer 1 1 3 ? ? ? PRD_000924 N1 N1 N 0 1 N N N -9.891 6.575 35.941 6.394 0.498 -0.611 ASP 2 N polymer 1 1 4 ? ? ? PRD_000924 C3 C3 C 0 1 N N S -9.397 6.749 34.574 5.247 0.673 0.284 ASP 2 CA polymer 1 1 5 ? ? ? PRD_000924 C4 C4 C 0 1 N N N -8.908 8.164 34.311 3.988 0.240 -0.422 ASP 2 C polymer 1 1 6 ? ? ? PRD_000924 O2 O2 O 0 1 N N N -9.542 9.141 34.711 4.043 -0.174 -1.561 ASP 2 O polymer 1 1 7 ? ? ? PRD_000924 C5 C5 C 0 1 N N N -10.473 6.407 33.552 5.130 2.146 0.680 ASP 2 CB polymer 1 1 8 ? ? ? PRD_000924 C6 C6 C 0 1 N N N -10.875 4.956 33.602 6.325 2.540 1.509 ASP 2 CG polymer 1 1 9 ? ? ? PRD_000924 O3 O3 O 0 1 N N N -10.034 4.107 33.983 7.128 1.704 1.848 ASP 2 OD1 polymer 1 1 10 ? ? ? PRD_000924 O4 O4 O 0 1 N N N -12.031 4.672 33.246 6.497 3.822 1.871 ASP 2 OD2 polymer 1 1 11 ? ? ? PRD_000924 N2 N2 N 0 1 N N N -7.770 8.257 33.647 2.801 0.312 0.212 GLU 3 N polymer 1 1 12 ? ? ? PRD_000924 C7 C7 C 0 1 N N S -7.163 9.536 33.304 1.577 -0.108 -0.474 GLU 3 CA polymer 1 1 13 ? ? ? PRD_000924 C8 C8 C 0 1 N N N -6.627 9.426 31.883 0.393 0.600 0.132 GLU 3 C polymer 1 1 14 ? ? ? PRD_000924 O5 O5 O 0 1 N N N -6.387 8.320 31.392 0.555 1.379 1.047 GLU 3 O polymer 1 1 15 ? ? ? PRD_000924 C9 C9 C 0 1 N N N -6.030 9.866 34.287 1.401 -1.620 -0.321 GLU 3 CB polymer 1 1 16 ? ? ? PRD_000924 C10 C10 C 0 1 N N N -6.532 9.981 35.745 2.539 -2.343 -1.044 GLU 3 CG polymer 1 1 17 ? ? ? PRD_000924 C11 C11 C 0 1 N N N -5.419 10.163 36.780 2.365 -3.832 -0.893 GLU 3 CD polymer 1 1 18 ? ? ? PRD_000924 O6 O6 O 0 1 N N N -4.236 10.278 36.390 1.427 -4.271 -0.271 GLU 3 OE1 polymer 1 1 19 ? ? ? PRD_000924 O7 O7 O 0 1 N N N -5.740 10.187 37.995 3.253 -4.671 -1.450 GLU 3 OE2 polymer 1 1 20 ? ? ? PRD_000924 N3 N3 N 0 1 N N N -6.467 10.562 31.219 -0.847 0.367 -0.343 VAL 4 N polymer 1 1 21 ? ? ? PRD_000924 C12 C12 C 0 1 N N S -5.889 10.544 29.882 -1.998 1.055 0.246 VAL 4 CA polymer 1 1 22 ? ? ? PRD_000924 C13 C13 C 0 1 N N N -4.430 10.918 29.902 -3.243 0.237 0.019 VAL 4 C polymer 1 1 23 ? ? ? PRD_000924 O8 O8 O 0 1 N N N -3.946 11.605 30.814 -3.264 -0.606 -0.853 VAL 4 O polymer 1 1 24 ? ? ? PRD_000924 C14 C14 C 0 1 N N N -6.606 11.480 28.875 -2.163 2.427 -0.411 VAL 4 CB polymer 1 1 25 ? ? ? PRD_000924 C15 C15 C 0 1 N N N -7.977 10.951 28.536 -0.951 3.300 -0.079 VAL 4 CG1 polymer 1 1 26 ? ? ? PRD_000924 C16 C16 C 0 1 N N N -6.658 12.934 29.379 -2.269 2.257 -1.928 VAL 4 CG2 polymer 1 1 27 ? ? ? PRD_000924 C17 C17 C 0 1 N N N -2.266 11.854 27.498 -6.600 0.320 -0.125 AKZ 5 C polymer 1 1 28 ? ? ? PRD_000924 N4 N4 N 0 1 N N N -3.744 10.455 28.876 -4.333 0.441 0.785 AKZ 5 N polymer 1 1 29 ? ? ? PRD_000924 O9 O9 O 0 1 N N N -1.173 11.904 26.850 -7.769 -0.498 -0.201 AKZ 5 O polymer 1 1 30 ? ? ? PRD_000924 C18 C18 C 0 1 N N S -2.362 10.823 28.625 -5.504 -0.427 0.639 AKZ 5 CA polymer 1 1 31 ? ? ? PRD_000924 C19 C19 C 0 1 N N N -1.503 9.563 28.351 -6.024 -0.819 2.023 AKZ 5 CB polymer 1 1 32 ? ? ? PRD_000924 C20 C20 C 0 1 N N N -1.156 8.731 29.578 -4.991 -1.659 2.728 AKZ 5 CG polymer 1 1 33 ? ? ? PRD_000924 O10 O10 O 0 1 N N N -0.978 7.514 29.504 -3.945 -1.918 2.180 AKZ 5 OD1 polymer 1 1 34 ? ? ? PRD_000924 O11 O11 O 0 1 N N N -1.080 9.340 30.660 -5.231 -2.121 3.966 AKZ 5 OD2 polymer 1 1 35 ? ? ? PRD_000924 C21 C21 C 0 1 N N N -2.840 13.234 28.041 -6.109 0.640 -1.538 0QE 6 C1 polymer 1 1 36 ? ? ? PRD_000924 CL1 CL1 CL 0 0 N Y N ? ? ? -7.321 1.679 -2.375 0QE 6 CL1 polymer 1 1 37 ? ? ? PRD_000924 H1 H1 H 0 1 N N N -8.938 6.091 39.107 7.700 -1.288 -2.607 ACE 1 H1 polymer 1 1 38 ? ? ? PRD_000924 H2 H2 H 0 1 N N N -10.317 7.089 38.532 8.634 0.037 -1.873 ACE 1 H2 polymer 1 1 39 ? ? ? PRD_000924 H3 H3 H 0 1 N N N -10.382 5.300 38.389 8.842 -1.631 -1.285 ACE 1 H3 polymer 1 1 40 ? ? ? PRD_000924 H4 H4 H 0 1 N N N -10.869 6.690 36.115 6.698 1.238 -1.160 ASP 2 H polymer 1 1 41 ? ? ? PRD_000924 H5 H5 H 0 1 N N N -8.551 6.064 34.416 5.389 0.066 1.179 ASP 2 HA polymer 1 1 42 ? ? ? PRD_000924 H6 H6 H 0 1 N N N -11.360 7.026 33.753 5.091 2.762 -0.219 ASP 2 HB2 polymer 1 1 43 ? ? ? PRD_000924 H7 H7 H 0 1 N N N -10.089 6.632 32.546 4.219 2.294 1.261 ASP 2 HB3 polymer 1 1 44 ? ? ? PRD_000924 H8 H8 H 0 1 N N N -12.161 3.733 33.311 7.278 4.026 2.402 ASP 2 HD2 polymer 1 1 45 ? ? ? PRD_000924 H9 H9 H 0 1 N N N -7.307 7.416 33.369 2.757 0.643 1.123 GLU 3 H polymer 1 1 46 ? ? ? PRD_000924 H10 H10 H 0 1 N N N -7.917 10.336 33.345 1.649 0.144 -1.532 GLU 3 HA polymer 1 1 47 ? ? ? PRD_000924 H11 H11 H 0 1 N N N -5.274 9.069 34.235 1.418 -1.883 0.737 GLU 3 HB2 polymer 1 1 48 ? ? ? PRD_000924 H12 H12 H 0 1 N N N -5.575 10.823 33.993 0.447 -1.920 -0.754 GLU 3 HB3 polymer 1 1 49 ? ? ? PRD_000924 H13 H13 H 0 1 N N N -7.208 10.846 35.810 2.522 -2.080 -2.102 GLU 3 HG2 polymer 1 1 50 ? ? ? PRD_000924 H14 H14 H 0 1 N N N -7.086 9.064 35.992 3.493 -2.043 -0.611 GLU 3 HG3 polymer 1 1 51 ? ? ? PRD_000924 H15 H15 H 0 1 N N N -4.961 10.302 38.527 3.099 -5.618 -1.326 GLU 3 HE2 polymer 1 1 52 ? ? ? PRD_000924 H16 H16 H 0 1 N N N -6.742 11.429 31.635 -0.976 -0.256 -1.075 VAL 4 H polymer 1 1 53 ? ? ? PRD_000924 H17 H17 H 0 1 N N N -5.966 9.521 29.486 -1.837 1.182 1.316 VAL 4 HA polymer 1 1 54 ? ? ? PRD_000924 H18 H18 H 0 1 N N N -6.010 11.477 27.950 -3.068 2.904 -0.035 VAL 4 HB polymer 1 1 55 ? ? ? PRD_000924 H19 H19 H 0 0 N N N -8.466 11.630 27.822 -0.067 2.897 -0.572 VAL 4 HG11 polymer 1 1 56 ? ? ? PRD_000924 H20 H20 H 0 0 N N N -7.883 9.951 28.087 -1.130 4.318 -0.428 VAL 4 HG12 polymer 1 1 57 ? ? ? PRD_000924 H21 H21 H 0 0 N N N -8.582 10.886 29.453 -0.794 3.309 0.999 VAL 4 HG13 polymer 1 1 58 ? ? ? PRD_000924 H22 H22 H 0 0 N N N -7.173 13.562 28.637 -3.189 1.726 -2.171 VAL 4 HG21 polymer 1 1 59 ? ? ? PRD_000924 H23 H23 H 0 0 N N N -7.204 12.972 30.333 -2.278 3.237 -2.404 VAL 4 HG22 polymer 1 1 60 ? ? ? PRD_000924 H24 H24 H 0 0 N N N -5.634 13.307 29.527 -1.414 1.686 -2.290 VAL 4 HG23 polymer 1 1 61 ? ? ? PRD_000924 H25 H25 H 0 1 N N N -4.194 9.824 28.244 -4.342 1.163 1.433 AKZ 5 H polymer 1 1 62 ? ? ? PRD_000924 H26 H26 H 0 1 N N N -1.961 11.295 29.534 -5.224 -1.325 0.088 AKZ 5 HA polymer 1 1 63 ? ? ? PRD_000924 H27 H27 H 0 1 N N N -2.057 8.920 27.650 -6.220 0.081 2.606 AKZ 5 HB2 polymer 1 1 64 ? ? ? PRD_000924 H28 H28 H 0 1 N N N -0.562 9.889 27.884 -6.946 -1.391 1.916 AKZ 5 HB3 polymer 1 1 65 ? ? ? PRD_000924 H29 H29 H 0 1 N N N -0.874 8.726 31.356 -4.539 -2.655 4.377 AKZ 5 HD2 polymer 1 1 66 ? ? ? PRD_000924 H30 H30 H 0 1 N N N -1.231 12.576 26.181 -7.630 -1.342 -0.653 AKZ 5 HO polymer 1 1 67 ? ? ? PRD_000924 H31 H31 H 0 1 N N N -3.036 11.528 26.784 -6.838 1.247 0.396 AKZ 5 H1 polymer 1 1 68 ? ? ? PRD_000924 H32 H32 H 0 1 N N N -2.184 14.053 28.373 -5.156 1.167 -1.481 0QE 6 HA polymer 1 1 69 ? ? ? PRD_000924 H33 H33 H 0 1 N N N -3.806 13.304 28.562 -5.978 -0.287 -2.096 0QE 6 HB polymer 1 1 70 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_000924 C1 O1 DOUB N N 1 PRD_000924 C1 C2 SING N N 2 PRD_000924 C2 H1 SING N N 3 PRD_000924 C2 H2 SING N N 4 PRD_000924 C2 H3 SING N N 5 PRD_000924 N1 C3 SING N N 6 PRD_000924 N1 H4 SING N N 7 PRD_000924 C3 C4 SING N N 8 PRD_000924 C3 C5 SING N N 9 PRD_000924 C3 H5 SING N N 10 PRD_000924 C4 O2 DOUB N N 11 PRD_000924 C5 C6 SING N N 12 PRD_000924 C5 H6 SING N N 13 PRD_000924 C5 H7 SING N N 14 PRD_000924 C6 O3 DOUB N N 15 PRD_000924 C6 O4 SING N N 16 PRD_000924 O4 H8 SING N N 17 PRD_000924 N2 C7 SING N N 18 PRD_000924 N2 H9 SING N N 19 PRD_000924 C7 C8 SING N N 20 PRD_000924 C7 C9 SING N N 21 PRD_000924 C7 H10 SING N N 22 PRD_000924 C8 O5 DOUB N N 23 PRD_000924 C9 C10 SING N N 24 PRD_000924 C9 H11 SING N N 25 PRD_000924 C9 H12 SING N N 26 PRD_000924 C10 C11 SING N N 27 PRD_000924 C10 H13 SING N N 28 PRD_000924 C10 H14 SING N N 29 PRD_000924 C11 O6 DOUB N N 30 PRD_000924 C11 O7 SING N N 31 PRD_000924 O7 H15 SING N N 32 PRD_000924 N3 C12 SING N N 33 PRD_000924 N3 H16 SING N N 34 PRD_000924 C12 C13 SING N N 35 PRD_000924 C12 C14 SING N N 36 PRD_000924 C12 H17 SING N N 37 PRD_000924 C13 O8 DOUB N N 38 PRD_000924 C14 C15 SING N N 39 PRD_000924 C14 C16 SING N N 40 PRD_000924 C14 H18 SING N N 41 PRD_000924 C15 H19 SING N N 42 PRD_000924 C15 H20 SING N N 43 PRD_000924 C15 H21 SING N N 44 PRD_000924 C16 H22 SING N N 45 PRD_000924 C16 H23 SING N N 46 PRD_000924 C16 H24 SING N N 47 PRD_000924 C17 O9 SING N N 48 PRD_000924 N4 C18 SING N N 49 PRD_000924 N4 H25 SING N N 50 PRD_000924 C18 C17 SING N N 51 PRD_000924 C18 C19 SING N N 52 PRD_000924 C18 H26 SING N N 53 PRD_000924 C19 H27 SING N N 54 PRD_000924 C19 H28 SING N N 55 PRD_000924 C20 C19 SING N N 56 PRD_000924 C20 O11 SING N N 57 PRD_000924 O10 C20 DOUB N N 58 PRD_000924 O11 H29 SING N N 59 PRD_000924 O9 H30 SING N N 60 PRD_000924 C17 H31 SING N N 61 PRD_000924 C21 CL1 SING N N 62 PRD_000924 C21 H32 SING N N 63 PRD_000924 C21 H33 SING N N 64 PRD_000924 C1 N1 SING N N 65 PRD_000924 C4 N2 SING N N 66 PRD_000924 C8 N3 SING N N 67 PRD_000924 C13 N4 SING N N 68 PRD_000924 C17 C21 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_000924 SMILES ACDLabs 12.01 "O=C(NC(CC(=O)O)C(O)CCl)C(NC(=O)C(NC(=O)C(NC(=O)C)CC(=O)O)CCC(=O)O)C(C)C" PRD_000924 InChI InChI 1.03 "InChI=1S/C21H33ClN4O11/c1-9(2)18(21(37)25-12(6-16(31)32)14(28)8-22)26-19(35)11(4-5-15(29)30)24-20(36)13(7-17(33)34)23-10(3)27/h9,11-14,18,28H,4-8H2,1-3H3,(H,23,27)(H,24,36)(H,25,37)(H,26,35)(H,29,30)(H,31,32)(H,33,34)/t11?,12-,13+,14-,18+/m1/s1" PRD_000924 InChIKey InChI 1.03 SHEGYZHNMSOJBK-DJQDYWCJSA-N PRD_000924 SMILES_CANONICAL CACTVS 3.370 "CC(C)[C@H](NC(=O)[C@H](CCC(O)=O)NC(=O)[C@H](CC(O)=O)NC(C)=O)C(=O)N[C@@H](CC(O)=O)[C@H](O)CCl" PRD_000924 SMILES CACTVS 3.370 "CC(C)[CH](NC(=O)[CH](CCC(O)=O)NC(=O)[CH](CC(O)=O)NC(C)=O)C(=O)N[CH](CC(O)=O)[CH](O)CCl" PRD_000924 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)[C@@H](C(=O)N[C@@H](CC(=O)O)C(CCl)O)NC(=O)[C@H](CCC(=O)O)NC(=O)[C@H](CC(=O)O)NC(=O)C" PRD_000924 SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)C(C(=O)NC(CC(=O)O)C(CCl)O)NC(=O)C(CCC(=O)O)NC(=O)C(CC(=O)O)NC(=O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_000924 "SYSTEMATIC NAME" ACDLabs 12.01 "3-[(N-acetyl-L-alpha-aspartyl-L-alpha-glutamyl-L-valyl)amino]-5-chloro-2,3,5-trideoxy-D-threo-pentonic acid" PRD_000924 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(4S)-4-[[(2S)-2-acetamido-4-oxidanyl-4-oxidanylidene-butanoyl]amino]-5-[[(2S)-1-[[(3S)-5-chloranyl-1,4-bis(oxidanyl)-1-oxidanylidene-pentan-3-yl]amino]-3-methyl-1-oxidanylidene-butan-2-yl]amino]-5-oxidanylidene-pentanoic acid" #