data_PRDCC_002097 # _chem_comp.id PRD_002097 _chem_comp.name "[[[(4S)-5-[[(2S)-1-[[(2S)-5-[[azaniumylidene(azanyl)methyl]amino]-1-oxidanylidene-pentan-2-yl]amino]-3-methyl-1-oxidanylidene-butan-2-yl]amino]-5-oxidanylidene-4-[[(2S)-1-oxidanyl-1-oxidanylidene-3-phenyl-propan-2-yl]carbamoylamino]pentyl]amino]-azanyl-methylidene]azanium" _chem_comp.formula "C27 H46 N10 O6" _chem_comp.formula_weight 606.718 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_pcm ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_002097 C1 C1 C 0 1 Y N N -3.531 24.254 67.476 ? ? ? FC0 1 CD1 polymer 1 1 1 ? ? ? PRD_002097 C2 C2 C 0 1 Y N N -3.745 22.906 67.150 ? ? ? FC0 1 CE1 polymer 1 1 2 ? ? ? PRD_002097 C3 C3 C 0 1 Y N N -4.413 22.574 65.977 ? ? ? FC0 1 CZ polymer 1 1 3 ? ? ? PRD_002097 C4 C4 C 0 1 Y N N -4.868 23.596 65.123 ? ? ? FC0 1 CE2 polymer 1 1 4 ? ? ? PRD_002097 C5 C5 C 0 1 Y N N -4.664 24.947 65.465 ? ? ? FC0 1 CD2 polymer 1 1 5 ? ? ? PRD_002097 C6 C6 C 0 1 Y N N -3.997 25.284 66.664 ? ? ? FC0 1 CG polymer 1 1 6 ? ? ? PRD_002097 C7 C7 C 0 1 N N N -3.772 26.779 67.045 ? ? ? FC0 1 CB polymer 1 1 7 ? ? ? PRD_002097 C8 C8 C 0 1 N N S -3.827 27.090 68.584 ? ? ? FC0 1 CA polymer 1 1 8 ? ? ? PRD_002097 C9 C9 C 0 1 N N N -3.776 28.637 68.890 ? ? ? FC0 1 C polymer 1 1 9 ? ? ? PRD_002097 O1 O1 O 0 1 N N N -3.564 29.022 70.093 ? ? ? FC0 1 O polymer 1 1 10 ? ? ? PRD_002097 O2 O2 O 0 1 N Y N -4.021 29.391 67.932 ? ? ? FC0 1 OXT polymer 1 1 11 ? ? ? PRD_002097 N1 N1 N 0 1 N N N -5.043 26.566 69.279 ? ? ? FC0 1 N polymer 1 1 12 ? ? ? PRD_002097 C10 C10 C 0 1 N N N -5.093 26.485 70.637 ? ? ? FC0 1 C1 polymer 1 1 13 ? ? ? PRD_002097 O3 O3 O 0 1 N N N -4.103 26.864 71.301 ? ? ? FC0 1 O1 polymer 1 1 14 ? ? ? PRD_002097 N2 N2 N 0 1 N N N -6.224 25.964 71.235 ? ? ? ARG 2 N polymer 1 1 15 ? ? ? PRD_002097 C11 C11 C 0 1 N N S -6.475 25.852 72.705 ? ? ? ARG 2 CA polymer 1 1 16 ? ? ? PRD_002097 C12 C12 C 0 1 N N N -5.752 24.503 73.131 ? ? ? ARG 2 C polymer 1 1 17 ? ? ? PRD_002097 O4 O4 O 0 1 N N N -6.363 23.478 73.502 ? ? ? ARG 2 O polymer 1 1 18 ? ? ? PRD_002097 C13 C13 C 0 1 N N N -7.967 25.624 72.941 ? ? ? ARG 2 CB polymer 1 1 19 ? ? ? PRD_002097 C14 C14 C 0 1 N N N -8.780 26.891 72.738 ? ? ? ARG 2 CG polymer 1 1 20 ? ? ? PRD_002097 C15 C15 C 0 1 N N N -10.334 26.564 72.886 ? ? ? ARG 2 CD polymer 1 1 21 ? ? ? PRD_002097 N3 N3 N 0 1 N N N -10.852 25.925 74.253 ? ? ? ARG 2 NE polymer 1 1 22 ? ? ? PRD_002097 C16 C16 C 0 1 N N N -11.195 24.779 75.058 ? ? ? ARG 2 CZ polymer 1 1 23 ? ? ? PRD_002097 N4 N4 N 0 1 N N N -11.620 23.351 74.790 ? ? ? ARG 2 NH1 polymer 1 1 24 ? ? ? PRD_002097 N5 N5 N 1 1 N N N -11.346 25.320 76.339 ? ? ? ARG 2 NH2 polymer 1 1 25 ? ? ? PRD_002097 N6 N6 N 0 1 N N N -4.440 24.479 73.030 ? ? ? VAL 3 N polymer 1 1 26 ? ? ? PRD_002097 C17 C17 C 0 1 N N S -3.667 23.259 73.265 ? ? ? VAL 3 CA polymer 1 1 27 ? ? ? PRD_002097 C18 C18 C 0 1 N N N -2.853 23.404 74.524 ? ? ? VAL 3 C polymer 1 1 28 ? ? ? PRD_002097 O5 O5 O 0 1 N N N -2.502 24.495 74.943 ? ? ? VAL 3 O polymer 1 1 29 ? ? ? PRD_002097 C19 C19 C 0 1 N N N -2.760 22.939 71.989 ? ? ? VAL 3 CB polymer 1 1 30 ? ? ? PRD_002097 C20 C20 C 0 1 N N N -3.773 22.552 70.783 ? ? ? VAL 3 CG1 polymer 1 1 31 ? ? ? PRD_002097 C21 C21 C 0 1 N N N -1.770 24.113 71.682 ? ? ? VAL 3 CG2 polymer 1 1 32 ? ? ? PRD_002097 N7 N7 N 0 1 N N N -2.412 22.223 74.977 ? ? ? RGL 4 N polymer 1 1 33 ? ? ? PRD_002097 C22 C22 C 0 1 N N S -1.465 22.168 76.123 ? ? ? RGL 4 CA polymer 1 1 34 ? ? ? PRD_002097 C23 C23 C 0 1 N N N -0.080 22.351 75.432 ? ? ? RGL 4 C polymer 1 1 35 ? ? ? PRD_002097 O6 O6 O 0 1 N N N 0.271 21.279 74.517 ? ? ? RGL 4 O polymer 1 1 36 ? ? ? PRD_002097 C24 C24 C 0 1 N N N -1.495 20.825 76.890 ? ? ? RGL 4 CB polymer 1 1 37 ? ? ? PRD_002097 C25 C25 C 0 1 N N N -2.984 20.778 77.502 ? ? ? RGL 4 CG polymer 1 1 38 ? ? ? PRD_002097 C26 C26 C 0 1 N N N -3.069 19.463 78.331 ? ? ? RGL 4 CD polymer 1 1 39 ? ? ? PRD_002097 N8 N8 N 0 1 N N N -4.450 19.082 78.543 ? ? ? RGL 4 NE polymer 1 1 40 ? ? ? PRD_002097 C27 C27 C 0 1 N N N -5.200 19.286 79.693 ? ? ? RGL 4 CZ polymer 1 1 41 ? ? ? PRD_002097 N9 N9 N 0 1 N N N -4.765 20.119 80.680 ? ? ? RGL 4 NH1 polymer 1 1 42 ? ? ? PRD_002097 N10 N10 N 1 1 N N N -6.357 18.576 79.678 ? ? ? RGL 4 NH2 polymer 1 1 43 ? ? ? PRD_002097 H1 H1 H 0 1 N N N -2.991 24.498 68.379 ? ? ? FC0 1 HD1 polymer 1 1 44 ? ? ? PRD_002097 H2 H2 H 0 1 N N N -3.391 22.127 67.810 ? ? ? FC0 1 HE1 polymer 1 1 45 ? ? ? PRD_002097 H3 H3 H 0 1 N N N -4.582 21.538 65.723 ? ? ? FC0 1 HZ polymer 1 1 46 ? ? ? PRD_002097 H4 H4 H 0 1 N N N -5.375 23.344 64.203 ? ? ? FC0 1 HE2 polymer 1 1 47 ? ? ? PRD_002097 H5 H5 H 0 1 N N N -5.019 25.728 64.809 ? ? ? FC0 1 HD2 polymer 1 1 48 ? ? ? PRD_002097 H6 H6 H 0 1 N N N -2.782 27.081 66.672 ? ? ? FC0 1 HB1 polymer 1 1 49 ? ? ? PRD_002097 H7 H7 H 0 1 N N N -4.549 27.378 66.548 ? ? ? FC0 1 HB2 polymer 1 1 50 ? ? ? PRD_002097 H8 H8 H 0 1 N N N -2.939 26.633 69.046 ? ? ? FC0 1 HA polymer 1 1 51 ? ? ? PRD_002097 H9 H9 H 0 1 N N N -5.831 26.271 68.738 ? ? ? FC0 1 H polymer 1 1 52 ? ? ? PRD_002097 H10 H10 H 0 1 N Y N -4.026 30.293 68.231 ? ? ? FC0 1 HXT polymer 1 1 53 ? ? ? PRD_002097 H11 H11 H 0 1 N N N -6.944 25.630 70.627 ? ? ? ARG 2 H polymer 1 1 54 ? ? ? PRD_002097 H12 H12 H 0 1 N N N -6.088 26.712 73.271 ? ? ? ARG 2 HA polymer 1 1 55 ? ? ? PRD_002097 H13 H13 H 0 1 N N N -8.324 24.857 72.237 ? ? ? ARG 2 HB2 polymer 1 1 56 ? ? ? PRD_002097 H14 H14 H 0 1 N N N -8.113 25.271 73.973 ? ? ? ARG 2 HB3 polymer 1 1 57 ? ? ? PRD_002097 H15 H15 H 0 1 N N N -8.490 27.636 73.493 ? ? ? ARG 2 HG2 polymer 1 1 58 ? ? ? PRD_002097 H16 H16 H 0 1 N N N -8.585 27.293 71.733 ? ? ? ARG 2 HG3 polymer 1 1 59 ? ? ? PRD_002097 H17 H17 H 0 1 N N N -10.879 27.508 72.742 ? ? ? ARG 2 HD2 polymer 1 1 60 ? ? ? PRD_002097 H18 H18 H 0 1 N N N -10.596 25.863 72.080 ? ? ? ARG 2 HD3 polymer 1 1 61 ? ? ? PRD_002097 H19 H19 H 0 1 N N N -11.025 26.710 74.848 ? ? ? ARG 2 HE polymer 1 1 62 ? ? ? PRD_002097 H20 H20 H 0 0 N N N -12.007 22.798 75.528 ? ? ? ARG 2 HH11 polymer 1 1 63 ? ? ? PRD_002097 H21 H21 H 0 0 N N N -11.514 22.961 73.875 ? ? ? ARG 2 HH12 polymer 1 1 64 ? ? ? PRD_002097 H22 H22 H 0 0 N N N -11.734 24.764 77.074 ? ? ? ARG 2 HH21 polymer 1 1 65 ? ? ? PRD_002097 H23 H23 H 0 0 N N N -11.066 26.263 76.520 ? ? ? ARG 2 HH22 polymer 1 1 66 ? ? ? PRD_002097 H24 H24 H 0 1 N N N -3.957 25.320 72.785 ? ? ? VAL 3 H polymer 1 1 67 ? ? ? PRD_002097 H25 H25 H 0 1 N N N -4.360 22.415 73.394 ? ? ? VAL 3 HA polymer 1 1 68 ? ? ? PRD_002097 H26 H26 H 0 1 N N N -2.165 22.043 72.219 ? ? ? VAL 3 HB polymer 1 1 69 ? ? ? PRD_002097 H27 H27 H 0 0 N N N -3.194 22.322 69.877 ? ? ? VAL 3 HG11 polymer 1 1 70 ? ? ? PRD_002097 H28 H28 H 0 0 N N N -4.367 21.672 71.072 ? ? ? VAL 3 HG12 polymer 1 1 71 ? ? ? PRD_002097 H29 H29 H 0 0 N N N -4.445 23.399 70.583 ? ? ? VAL 3 HG13 polymer 1 1 72 ? ? ? PRD_002097 H30 H30 H 0 0 N N N -1.163 23.860 70.800 ? ? ? VAL 3 HG21 polymer 1 1 73 ? ? ? PRD_002097 H31 H31 H 0 0 N N N -2.341 25.032 71.482 ? ? ? VAL 3 HG22 polymer 1 1 74 ? ? ? PRD_002097 H32 H32 H 0 0 N N N -1.110 24.272 72.548 ? ? ? VAL 3 HG23 polymer 1 1 75 ? ? ? PRD_002097 H33 H33 H 0 1 N Y N 0.562 23.200 75.617 ? ? ? RGL 4 HX polymer 1 1 76 ? ? ? PRD_002097 H34 H34 H 0 1 N N N -2.720 21.376 74.544 ? ? ? RGL 4 H polymer 1 1 77 ? ? ? PRD_002097 H35 H35 H 0 1 N N N -1.646 23.001 76.818 ? ? ? RGL 4 HA polymer 1 1 78 ? ? ? PRD_002097 H36 H36 H 0 1 N N N -1.323 19.979 76.209 ? ? ? RGL 4 HB1 polymer 1 1 79 ? ? ? PRD_002097 H37 H37 H 0 1 N N N -0.740 20.812 77.690 ? ? ? RGL 4 HB2 polymer 1 1 80 ? ? ? PRD_002097 H38 H38 H 0 1 N N N -3.158 21.650 78.150 ? ? ? RGL 4 HG1 polymer 1 1 81 ? ? ? PRD_002097 H39 H39 H 0 1 N N N -3.729 20.768 76.693 ? ? ? RGL 4 HG2 polymer 1 1 82 ? ? ? PRD_002097 H40 H40 H 0 1 N N N -2.552 18.659 77.787 ? ? ? RGL 4 HD1 polymer 1 1 83 ? ? ? PRD_002097 H41 H41 H 0 1 N N N -2.583 19.618 79.306 ? ? ? RGL 4 HD2 polymer 1 1 84 ? ? ? PRD_002097 H42 H42 H 0 1 N N N -4.911 18.625 77.782 ? ? ? RGL 4 HE polymer 1 1 85 ? ? ? PRD_002097 H43 H43 H 0 0 N N N -5.321 20.255 81.500 ? ? ? RGL 4 HH11 polymer 1 1 86 ? ? ? PRD_002097 H44 H44 H 0 0 N N N -3.890 20.594 80.584 ? ? ? RGL 4 HH12 polymer 1 1 87 ? ? ? PRD_002097 H45 H45 H 0 0 N N N -6.991 18.637 80.449 ? ? ? RGL 4 HH21 polymer 1 1 88 ? ? ? PRD_002097 H46 H46 H 0 0 N N N -6.575 17.992 78.896 ? ? ? RGL 4 HH22 polymer 1 1 89 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_002097 C1 C2 SING Y N 1 PRD_002097 C1 C6 DOUB Y N 2 PRD_002097 C2 C3 DOUB Y N 3 PRD_002097 C3 C4 SING Y N 4 PRD_002097 C4 C5 DOUB Y N 5 PRD_002097 C5 C6 SING Y N 6 PRD_002097 C6 C7 SING N N 7 PRD_002097 C7 C8 SING N N 8 PRD_002097 C8 C9 SING N N 9 PRD_002097 C8 N1 SING N N 10 PRD_002097 C9 O1 DOUB N N 11 PRD_002097 C9 O2 SING N N 12 PRD_002097 N1 C10 SING N N 13 PRD_002097 C10 O3 DOUB N N 14 PRD_002097 C1 H1 SING N N 15 PRD_002097 C2 H2 SING N N 16 PRD_002097 C3 H3 SING N N 17 PRD_002097 C4 H4 SING N N 18 PRD_002097 C5 H5 SING N N 19 PRD_002097 C7 H6 SING N N 20 PRD_002097 C7 H7 SING N N 21 PRD_002097 C8 H8 SING N N 22 PRD_002097 N1 H9 SING N N 23 PRD_002097 O2 H10 SING N N 24 PRD_002097 N2 C11 SING N N 25 PRD_002097 N2 H11 SING N N 26 PRD_002097 C11 C12 SING N N 27 PRD_002097 C11 C13 SING N N 28 PRD_002097 C11 H12 SING N N 29 PRD_002097 C12 O4 DOUB N N 30 PRD_002097 C13 C14 SING N N 31 PRD_002097 C13 H13 SING N N 32 PRD_002097 C13 H14 SING N N 33 PRD_002097 C14 C15 SING N N 34 PRD_002097 C14 H15 SING N N 35 PRD_002097 C14 H16 SING N N 36 PRD_002097 C15 N3 SING N N 37 PRD_002097 C15 H17 SING N N 38 PRD_002097 C15 H18 SING N N 39 PRD_002097 N3 C16 SING N N 40 PRD_002097 N3 H19 SING N N 41 PRD_002097 C16 N4 SING N N 42 PRD_002097 C16 N5 DOUB N N 43 PRD_002097 N4 H20 SING N N 44 PRD_002097 N4 H21 SING N N 45 PRD_002097 N5 H22 SING N N 46 PRD_002097 N5 H23 SING N N 47 PRD_002097 N6 C17 SING N N 48 PRD_002097 N6 H24 SING N N 49 PRD_002097 C17 C18 SING N N 50 PRD_002097 C17 C19 SING N N 51 PRD_002097 C17 H25 SING N N 52 PRD_002097 C18 O5 DOUB N N 53 PRD_002097 C19 C20 SING N N 54 PRD_002097 C19 C21 SING N N 55 PRD_002097 C19 H26 SING N N 56 PRD_002097 C20 H27 SING N N 57 PRD_002097 C20 H28 SING N N 58 PRD_002097 C20 H29 SING N N 59 PRD_002097 C21 H30 SING N N 60 PRD_002097 C21 H31 SING N N 61 PRD_002097 C21 H32 SING N N 62 PRD_002097 N7 C22 SING N N 63 PRD_002097 C22 C23 SING N N 64 PRD_002097 C22 C24 SING N N 65 PRD_002097 C23 O6 DOUB N N 66 PRD_002097 C23 H33 SING N N 67 PRD_002097 C24 C25 SING N N 68 PRD_002097 C25 C26 SING N N 69 PRD_002097 C26 N8 SING N N 70 PRD_002097 N8 C27 SING N N 71 PRD_002097 C27 N9 SING N N 72 PRD_002097 C27 N10 DOUB N N 73 PRD_002097 N7 H34 SING N N 74 PRD_002097 C22 H35 SING N N 75 PRD_002097 C24 H36 SING N N 76 PRD_002097 C24 H37 SING N N 77 PRD_002097 C25 H38 SING N N 78 PRD_002097 C25 H39 SING N N 79 PRD_002097 C26 H40 SING N N 80 PRD_002097 C26 H41 SING N N 81 PRD_002097 N8 H42 SING N N 82 PRD_002097 N9 H43 SING N N 83 PRD_002097 N9 H44 SING N N 84 PRD_002097 N10 H45 SING N N 85 PRD_002097 N10 H46 SING N N 86 PRD_002097 C10 N2 SING N N 87 PRD_002097 C12 N6 SING N N 88 PRD_002097 C18 N7 SING N N 89 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_002097 InChI InChI 1.06 "InChI=1S/C27H44N10O6/c1-16(2)21(23(40)34-18(15-38)10-6-12-32-25(28)29)37-22(39)19(11-7-13-33-26(30)31)35-27(43)36-20(24(41)42)14-17-8-4-3-5-9-17/h3-5,8-9,15-16,18-21H,6-7,10-14H2,1-2H3,(H,34,40)(H,37,39)(H,41,42)(H4,28,29,32)(H4,30,31,33)(H2,35,36,43)/p+2/t18-,19-,20-,21-/m0/s1" PRD_002097 InChIKey InChI 1.06 SDNYTAYICBFYFH-TUFLPTIASA-P PRD_002097 SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](NC(=O)[C@H](CCCNC(N)=[NH2+])NC(=O)N[C@@H](Cc1ccccc1)C(O)=O)C(=O)N[C@@H](CCCNC(N)=[NH2+])C=O" PRD_002097 SMILES CACTVS 3.385 "CC(C)[CH](NC(=O)[CH](CCCNC(N)=[NH2+])NC(=O)N[CH](Cc1ccccc1)C(O)=O)C(=O)N[CH](CCCNC(N)=[NH2+])C=O" PRD_002097 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](C(=O)N[C@@H](CCCNC(=[NH2+])N)C=O)NC(=O)[C@H](CCCNC(=[NH2+])N)NC(=O)N[C@@H](Cc1ccccc1)C(=O)O" PRD_002097 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)NC(CCCNC(=[NH2+])N)C=O)NC(=O)C(CCCNC(=[NH2+])N)NC(=O)NC(Cc1ccccc1)C(=O)O" # _pdbx_chem_comp_identifier.comp_id PRD_002097 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 1.9.0 _pdbx_chem_comp_identifier.identifier "[[[(4S)-5-[[(2S)-1-[[(2S)-5-[[azaniumylidene(azanyl)methyl]amino]-1-oxidanylidene-pentan-2-yl]amino]-3-methyl-1-oxidanylidene-butan-2-yl]amino]-5-oxidanylidene-4-[[(2S)-1-oxidanyl-1-oxidanylidene-3-phenyl-propan-2-yl]carbamoylamino]pentyl]amino]-azanyl-methylidene]azanium" #