data_PRDCC_002162 # _chem_comp.id PRD_002162 _chem_comp.name "N-[(4-carbamimidamidobutyl)carbamoyl]-L-seryl-N-[(2S)-5-{[amino(iminio)methyl]amino}-1-oxopentan-2-yl]-L-valinamide" _chem_comp.formula "C20 H41 N10 O5" _chem_comp.formula_weight 501.604 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_002162 C1 C1 C 0 1 N N N -21.699 18.333 -8.386 -5.945 0.412 0.508 AG2 1 CA polymer 1 1 1 ? ? ? PRD_002162 C2 C2 C 0 1 N N N -22.650 18.400 -9.539 -6.922 -0.612 -0.071 AG2 1 CB polymer 1 1 2 ? ? ? PRD_002162 C3 C3 C 0 1 N N N -22.059 19.124 -10.733 -8.358 -0.165 0.213 AG2 1 CG polymer 1 1 3 ? ? ? PRD_002162 C4 C4 C 0 1 N N N -22.756 20.481 -10.884 -9.335 -1.190 -0.367 AG2 1 CD polymer 1 1 4 ? ? ? PRD_002162 N1 N1 N 0 1 N N N -23.857 20.197 -11.758 -10.710 -0.762 -0.095 AG2 1 NE polymer 1 1 5 ? ? ? PRD_002162 C5 C5 C 0 1 N N N -23.578 20.199 -13.160 -11.766 -1.529 -0.524 AG2 1 CZ polymer 1 1 6 ? ? ? PRD_002162 N2 N2 N 0 1 N N N -24.638 19.874 -14.038 -12.989 -1.148 -0.282 AG2 1 NH1 polymer 1 1 7 ? ? ? PRD_002162 N3 N3 N 0 1 N N N -22.366 20.456 -13.583 -11.533 -2.699 -1.208 AG2 1 NH2 polymer 1 1 8 ? ? ? PRD_002162 C6 C6 C 0 1 N N N -20.285 17.720 -6.339 -3.535 0.737 0.657 URE 2 C polymer 1 1 9 ? ? ? PRD_002162 O1 O1 O 0 1 N N N -19.213 17.855 -6.858 -3.741 1.771 1.262 URE 2 O polymer 1 1 10 ? ? ? PRD_002162 N4 N4 N 0 1 N N N -21.492 17.791 -7.067 -4.570 -0.016 0.237 URE 2 N1 polymer 1 1 11 ? ? ? PRD_002162 N5 N5 N 0 1 N N N -20.403 16.892 -5.154 -2.270 0.343 0.407 SER 3 N polymer 1 1 12 ? ? ? PRD_002162 C7 C7 C 0 1 N N S -19.194 16.318 -4.581 -1.144 1.161 0.864 SER 3 CA polymer 1 1 13 ? ? ? PRD_002162 C8 C8 C 0 1 N N N -19.337 14.818 -4.578 0.057 0.894 -0.006 SER 3 C polymer 1 1 14 ? ? ? PRD_002162 O2 O2 O 0 1 N N N -19.922 14.280 -3.680 -0.020 0.098 -0.918 SER 3 O polymer 1 1 15 ? ? ? PRD_002162 C9 C9 C 0 1 N N N -18.937 16.832 -3.170 -0.812 0.807 2.315 SER 3 CB polymer 1 1 16 ? ? ? PRD_002162 O3 O3 O 0 1 N N N -19.967 16.429 -2.289 -0.350 -0.544 2.382 SER 3 OG polymer 1 1 17 ? ? ? PRD_002162 N6 N6 N 0 1 N N N -18.766 14.172 -5.584 1.217 1.539 0.230 VAL 4 N polymer 1 1 18 ? ? ? PRD_002162 C10 C10 C 0 1 N N S -19.140 12.857 -6.061 2.384 1.279 -0.616 VAL 4 CA polymer 1 1 19 ? ? ? PRD_002162 C11 C11 C 0 1 N N N -18.161 11.769 -5.662 3.641 1.592 0.153 VAL 4 C polymer 1 1 20 ? ? ? PRD_002162 O4 O4 O 0 1 N N N -17.176 11.559 -6.290 3.573 2.161 1.222 VAL 4 O polymer 1 1 21 ? ? ? PRD_002162 C12 C12 C 0 1 N N N -19.273 12.858 -7.592 2.316 2.161 -1.864 VAL 4 CB polymer 1 1 22 ? ? ? PRD_002162 C13 C13 C 0 1 N N N -19.737 11.525 -8.104 1.123 1.739 -2.723 VAL 4 CG1 polymer 1 1 23 ? ? ? PRD_002162 C14 C14 C 0 1 N N N -20.202 13.949 -8.060 2.152 3.624 -1.446 VAL 4 CG2 polymer 1 1 24 ? ? ? PRD_002162 N7 N7 N 0 1 N N N -18.501 11.089 -4.586 4.843 1.240 -0.347 RGL 5 N polymer 1 1 25 ? ? ? PRD_002162 C15 C15 C 0 1 N N S -17.690 10.062 -3.949 6.056 1.452 0.446 RGL 5 CA polymer 1 1 26 ? ? ? PRD_002162 C16 C16 C 0 1 N N N -18.168 8.595 -4.122 6.548 2.862 0.245 RGL 5 C polymer 1 1 27 ? ? ? PRD_002162 O5 O5 O 0 1 N N N -17.736 7.755 -3.374 5.946 3.614 -0.484 RGL 5 O polymer 1 1 28 ? ? ? PRD_002162 C17 C17 C 0 1 N N N -17.563 10.435 -2.490 7.137 0.467 -0.004 RGL 5 CB polymer 1 1 29 ? ? ? PRD_002162 C18 C18 C 0 1 N N N -16.816 11.745 -2.343 6.690 -0.961 0.315 RGL 5 CG polymer 1 1 30 ? ? ? PRD_002162 C19 C19 C 0 1 N N N -16.508 12.127 -0.912 7.771 -1.946 -0.134 RGL 5 CD polymer 1 1 31 ? ? ? PRD_002162 N8 N8 N 0 1 N N N -15.663 11.159 -0.249 7.342 -3.314 0.170 RGL 5 NE polymer 1 1 32 ? ? ? PRD_002162 C20 C20 C 0 1 N N N -14.824 11.451 0.734 8.152 -4.370 -0.144 RGL 5 CZ polymer 1 1 33 ? ? ? PRD_002162 N9 N9 N 0 1 N N N -14.711 12.697 1.171 9.331 -4.156 -0.726 RGL 5 NH1 polymer 1 1 34 ? ? ? PRD_002162 N10 N10 N 1 1 N N N -14.122 10.490 1.291 7.763 -5.614 0.134 RGL 5 NH2 polymer 1 1 35 ? ? ? PRD_002162 H1 H1 H 0 1 N N N -20.803 17.950 -8.896 -6.121 1.384 0.047 AG2 1 HA1 polymer 1 1 36 ? ? ? PRD_002162 H2 H2 H 0 1 N N N -21.572 19.405 -8.177 -6.095 0.489 1.585 AG2 1 HA2 polymer 1 1 37 ? ? ? PRD_002162 H3 H3 H 0 1 N N N -22.912 17.375 -9.841 -6.772 -0.689 -1.148 AG2 1 HB1 polymer 1 1 38 ? ? ? PRD_002162 H4 H4 H 0 1 N N N -23.558 18.931 -9.218 -6.746 -1.584 0.391 AG2 1 HB2 polymer 1 1 39 ? ? ? PRD_002162 H5 H5 H 0 1 N N N -20.981 19.278 -10.576 -8.508 -0.088 1.289 AG2 1 HG1 polymer 1 1 40 ? ? ? PRD_002162 H6 H6 H 0 1 N N N -22.215 18.525 -11.642 -8.534 0.806 -0.249 AG2 1 HG2 polymer 1 1 41 ? ? ? PRD_002162 H7 H7 H 0 1 N N N -23.112 20.851 -9.911 -9.185 -1.267 -1.444 AG2 1 HD1 polymer 1 1 42 ? ? ? PRD_002162 H8 H8 H 0 1 N N N -22.079 21.223 -11.333 -9.159 -2.161 0.095 AG2 1 HD2 polymer 1 1 43 ? ? ? PRD_002162 H9 H9 H 0 1 N N N -24.773 20.007 -11.405 -10.874 0.064 0.387 AG2 1 HE1 polymer 1 1 44 ? ? ? PRD_002162 H10 H10 H 0 0 N N N -24.344 19.868 -14.994 -13.735 -1.690 -0.585 AG2 1 HH11 polymer 1 1 45 ? ? ? PRD_002162 H11 H11 H 0 0 N N N -22.161 20.427 -14.561 -10.623 -2.983 -1.388 AG2 1 HH21 polymer 1 1 46 ? ? ? PRD_002162 H12 H12 H 0 0 N N N -21.645 20.682 -12.928 -12.279 -3.241 -1.511 AG2 1 HH22 polymer 1 1 47 ? ? ? PRD_002162 H13 H13 H 0 0 N N N -22.302 17.420 -6.612 -4.406 -0.841 -0.246 URE 2 HN12 polymer 1 1 48 ? ? ? PRD_002162 H14 H14 H 0 1 N N N -21.296 16.719 -4.739 -2.106 -0.482 -0.075 SER 3 H polymer 1 1 49 ? ? ? PRD_002162 H15 H15 H 0 1 N N N -18.332 16.586 -5.210 -1.412 2.216 0.800 SER 3 HA polymer 1 1 50 ? ? ? PRD_002162 H16 H16 H 0 1 N N N -17.978 16.431 -2.810 -0.034 1.476 2.684 SER 3 HB2 polymer 1 1 51 ? ? ? PRD_002162 H17 H17 H 0 1 N N N -18.890 17.931 -3.190 -1.706 0.915 2.929 SER 3 HB3 polymer 1 1 52 ? ? ? PRD_002162 H18 H18 H 0 1 N N N -20.256 15.553 -2.518 -0.120 -0.837 3.274 SER 3 HG polymer 1 1 53 ? ? ? PRD_002162 H19 H19 H 0 1 N N N -18.013 14.632 -6.054 1.278 2.175 0.959 VAL 4 H polymer 1 1 54 ? ? ? PRD_002162 H20 H20 H 0 1 N N N -20.123 12.596 -5.642 2.392 0.230 -0.913 VAL 4 HA polymer 1 1 55 ? ? ? PRD_002162 H21 H21 H 0 1 N N N -18.276 13.057 -8.013 3.236 2.049 -2.439 VAL 4 HB polymer 1 1 56 ? ? ? PRD_002162 H22 H22 H 0 0 N N N -19.821 11.562 -9.200 0.206 1.826 -2.139 VAL 4 HG11 polymer 1 1 57 ? ? ? PRD_002162 H23 H23 H 0 0 N N N -19.011 10.750 -7.818 1.058 2.386 -3.598 VAL 4 HG12 polymer 1 1 58 ? ? ? PRD_002162 H24 H24 H 0 0 N N N -20.719 11.287 -7.669 1.253 0.706 -3.044 VAL 4 HG13 polymer 1 1 59 ? ? ? PRD_002162 H25 H25 H 0 0 N N N -20.276 13.923 -9.157 3.003 3.925 -0.834 VAL 4 HG21 polymer 1 1 60 ? ? ? PRD_002162 H26 H26 H 0 0 N N N -21.199 13.794 -7.622 2.104 4.253 -2.335 VAL 4 HG22 polymer 1 1 61 ? ? ? PRD_002162 H27 H27 H 0 0 N N N -19.809 14.926 -7.742 1.233 3.737 -0.871 VAL 4 HG23 polymer 1 1 62 ? ? ? PRD_002162 H28 H28 H 0 1 N Y N -18.873 8.333 -4.897 7.438 3.202 0.754 RGL 5 HX polymer 1 1 63 ? ? ? PRD_002162 H29 H29 H 0 1 N N N -19.388 11.295 -4.173 4.904 0.847 -1.231 RGL 5 H polymer 1 1 64 ? ? ? PRD_002162 H30 H30 H 0 1 N N N -16.681 10.116 -4.384 5.834 1.291 1.501 RGL 5 HA polymer 1 1 65 ? ? ? PRD_002162 H31 H31 H 0 1 N N N -18.567 10.540 -2.054 7.297 0.567 -1.077 RGL 5 HB1 polymer 1 1 66 ? ? ? PRD_002162 H32 H32 H 0 1 N N N -17.014 9.643 -1.960 8.067 0.682 0.523 RGL 5 HB2 polymer 1 1 67 ? ? ? PRD_002162 H33 H33 H 0 1 N N N -15.865 11.663 -2.890 6.531 -1.061 1.389 RGL 5 HG1 polymer 1 1 68 ? ? ? PRD_002162 H34 H34 H 0 1 N N N -17.428 12.543 -2.789 5.760 -1.177 -0.212 RGL 5 HG2 polymer 1 1 69 ? ? ? PRD_002162 H35 H35 H 0 1 N N N -15.997 13.101 -0.909 7.930 -1.846 -1.208 RGL 5 HD1 polymer 1 1 70 ? ? ? PRD_002162 H36 H36 H 0 1 N N N -17.454 12.208 -0.357 8.700 -1.731 0.392 RGL 5 HD2 polymer 1 1 71 ? ? ? PRD_002162 H37 H37 H 0 1 N N N -15.715 10.207 -0.552 6.484 -3.470 0.595 RGL 5 HE polymer 1 1 72 ? ? ? PRD_002162 H38 H38 H 0 0 N N N -14.090 12.908 1.926 9.614 -3.251 -0.928 RGL 5 HH11 polymer 1 1 73 ? ? ? PRD_002162 H39 H39 H 0 0 N N N -15.246 13.427 0.745 9.905 -4.905 -0.949 RGL 5 HH12 polymer 1 1 74 ? ? ? PRD_002162 H40 H40 H 0 0 N N N -13.501 10.698 2.046 6.905 -5.770 0.558 RGL 5 HH21 polymer 1 1 75 ? ? ? PRD_002162 H41 H41 H 0 0 N N N -14.209 9.551 0.959 8.337 -6.363 -0.089 RGL 5 HH22 polymer 1 1 76 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_002162 C1 C2 SING N N 1 PRD_002162 C1 H1 SING N N 2 PRD_002162 C1 H2 SING N N 3 PRD_002162 C2 C3 SING N N 4 PRD_002162 C2 H3 SING N N 5 PRD_002162 C2 H4 SING N N 6 PRD_002162 C3 C4 SING N N 7 PRD_002162 C3 H5 SING N N 8 PRD_002162 C3 H6 SING N N 9 PRD_002162 C4 N1 SING N N 10 PRD_002162 C4 H7 SING N N 11 PRD_002162 C4 H8 SING N N 12 PRD_002162 N1 C5 SING N N 13 PRD_002162 N1 H9 SING N N 14 PRD_002162 C5 N2 DOUB N N 15 PRD_002162 C5 N3 SING N N 16 PRD_002162 N2 H10 SING N N 17 PRD_002162 N3 H11 SING N N 18 PRD_002162 N3 H12 SING N N 19 PRD_002162 C6 O1 DOUB N N 20 PRD_002162 C6 N4 SING N N 21 PRD_002162 N4 H13 SING N N 22 PRD_002162 N5 C7 SING N N 23 PRD_002162 N5 H14 SING N N 24 PRD_002162 C7 C8 SING N N 25 PRD_002162 C7 C9 SING N N 26 PRD_002162 C7 H15 SING N N 27 PRD_002162 C8 O2 DOUB N N 28 PRD_002162 C9 O3 SING N N 29 PRD_002162 C9 H16 SING N N 30 PRD_002162 C9 H17 SING N N 31 PRD_002162 O3 H18 SING N N 32 PRD_002162 N6 C10 SING N N 33 PRD_002162 N6 H19 SING N N 34 PRD_002162 C10 C11 SING N N 35 PRD_002162 C10 C12 SING N N 36 PRD_002162 C10 H20 SING N N 37 PRD_002162 C11 O4 DOUB N N 38 PRD_002162 C12 C13 SING N N 39 PRD_002162 C12 C14 SING N N 40 PRD_002162 C12 H21 SING N N 41 PRD_002162 C13 H22 SING N N 42 PRD_002162 C13 H23 SING N N 43 PRD_002162 C13 H24 SING N N 44 PRD_002162 C14 H25 SING N N 45 PRD_002162 C14 H26 SING N N 46 PRD_002162 C14 H27 SING N N 47 PRD_002162 N7 C15 SING N N 48 PRD_002162 C15 C16 SING N N 49 PRD_002162 C15 C17 SING N N 50 PRD_002162 C16 O5 DOUB N N 51 PRD_002162 C16 H28 SING N N 52 PRD_002162 C17 C18 SING N N 53 PRD_002162 C18 C19 SING N N 54 PRD_002162 C19 N8 SING N N 55 PRD_002162 N8 C20 SING N N 56 PRD_002162 C20 N9 SING N N 57 PRD_002162 C20 N10 DOUB N N 58 PRD_002162 N7 H29 SING N N 59 PRD_002162 C15 H30 SING N N 60 PRD_002162 C17 H31 SING N N 61 PRD_002162 C17 H32 SING N N 62 PRD_002162 C18 H33 SING N N 63 PRD_002162 C18 H34 SING N N 64 PRD_002162 C19 H35 SING N N 65 PRD_002162 C19 H36 SING N N 66 PRD_002162 N8 H37 SING N N 67 PRD_002162 N9 H38 SING N N 68 PRD_002162 N9 H39 SING N N 69 PRD_002162 N10 H40 SING N N 70 PRD_002162 N10 H41 SING N N 71 PRD_002162 C1 N4 SING N N 72 PRD_002162 C6 N5 SING N N 73 PRD_002162 C8 N6 SING N N 74 PRD_002162 C11 N7 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_002162 SMILES ACDLabs 12.01 "C(CCCN\C(=N)N)NC(=O)NC(C(=O)NC(C(=O)NC(C=O)CCCN/C(N)=[NH2+])C(C)C)CO" PRD_002162 InChI InChI 1.06 "InChI=1S/C20H40N10O5/c1-12(2)15(17(34)28-13(10-31)6-5-9-26-19(23)24)30-16(33)14(11-32)29-20(35)27-8-4-3-7-25-18(21)22/h10,12-15,32H,3-9,11H2,1-2H3,(H,28,34)(H,30,33)(H4,21,22,25)(H4,23,24,26)(H2,27,29,35)/p+1/t13-,14-,15-/m0/s1" PRD_002162 InChIKey InChI 1.06 JSAYHYYTJVSHRA-KKUMJFAQSA-O PRD_002162 SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](NC(=O)[C@H](CO)NC(=O)NCCCCNC(N)=N)C(=O)N[C@@H](CCCNC(N)=[NH2+])C=O" PRD_002162 SMILES CACTVS 3.385 "CC(C)[CH](NC(=O)[CH](CO)NC(=O)NCCCCNC(N)=N)C(=O)N[CH](CCCNC(N)=[NH2+])C=O" PRD_002162 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/NCCCCNC(=O)N[C@@H](CO)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CCCNC(=[NH2+])N)C=O" PRD_002162 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)NC(CCCNC(=[NH2+])N)C=O)NC(=O)C(CO)NC(=O)NCCCCNC(=N)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_002162 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(4-carbamimidamidobutyl)carbamoyl]-L-seryl-N-[(2S)-5-{[amino(iminio)methyl]amino}-1-oxopentan-2-yl]-L-valinamide" PRD_002162 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[azanyl-[[(4S)-4-[[(2S)-2-[[(2S)-2-(4-carbamimidamidobutylcarbamoylamino)-3-oxidanyl-propanoyl]amino]-3-methyl-butanoyl]amino]-5-oxidanylidene-pentyl]amino]methylidene]azanium" #