data_PRDCC_002526 # _chem_comp.id PRD_002526 _chem_comp.name "DFFR-chloromethyl ketone inhibitor" _chem_comp.formula "C25 H34 N6 O3" _chem_comp.formula_weight 466.576 _chem_comp.pdbx_release_status REF_ONLY _chem_comp.type peptide-like _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_002526 N1 N1 N 0 1 N N N 20.696 -0.008 20.456 3.896 1.232 2.123 DPN 1 N polymer 1 1 1 ? ? ? PRD_002526 C1 C1 C 0 1 N N R 20.296 1.315 20.965 3.376 0.152 1.274 DPN 1 CA polymer 1 1 2 ? ? ? PRD_002526 C2 C2 C 0 1 N N N 21.499 2.018 21.560 2.060 0.575 0.673 DPN 1 C polymer 1 1 3 ? ? ? PRD_002526 O1 O1 O 0 1 N N N 22.622 1.811 21.115 1.771 1.751 0.614 DPN 1 O polymer 1 1 4 ? ? ? PRD_002526 C3 C3 C 0 1 N N N 19.857 2.201 19.834 4.376 -0.144 0.155 DPN 1 CB polymer 1 1 5 ? ? ? PRD_002526 C4 C4 C 0 1 Y N N 18.687 1.683 19.066 5.651 -0.684 0.751 DPN 1 CG polymer 1 1 6 ? ? ? PRD_002526 C5 C5 C 0 1 Y N N 18.866 1.040 17.829 5.806 -2.045 0.934 DPN 1 CD1 polymer 1 1 7 ? ? ? PRD_002526 C6 C6 C 0 1 Y N N 17.398 1.802 19.592 6.668 0.182 1.109 DPN 1 CD2 polymer 1 1 8 ? ? ? PRD_002526 C7 C7 C 0 1 Y N N 17.743 0.576 17.090 6.975 -2.541 1.481 DPN 1 CE1 polymer 1 1 9 ? ? ? PRD_002526 C8 C8 C 0 1 Y N N 16.307 1.307 18.870 7.837 -0.314 1.655 DPN 1 CE2 polymer 1 1 10 ? ? ? PRD_002526 C9 C9 C 0 1 Y N N 16.487 0.715 17.645 7.990 -1.675 1.843 DPN 1 CZ polymer 1 1 11 ? ? ? PRD_002526 N2 N2 N 0 1 N N N 21.253 2.903 22.520 1.206 -0.354 0.200 PHE 2 N polymer 1 1 12 ? ? ? PRD_002526 C10 C10 C 0 1 N N S 22.333 3.666 23.158 -0.073 0.058 -0.384 PHE 2 CA polymer 1 1 13 ? ? ? PRD_002526 C11 C11 C 0 1 N N N 23.148 2.827 24.101 -1.064 -1.072 -0.269 PHE 2 C polymer 1 1 14 ? ? ? PRD_002526 O2 O2 O 0 1 N N N 22.610 2.200 25.012 -0.735 -2.117 0.250 PHE 2 O polymer 1 1 15 ? ? ? PRD_002526 C12 C12 C 0 1 N N N 21.722 4.938 23.779 0.130 0.409 -1.860 PHE 2 CB polymer 1 1 16 ? ? ? PRD_002526 C13 C13 C 0 1 Y N N 21.226 5.836 22.731 1.025 1.617 -1.969 PHE 2 CG polymer 1 1 17 ? ? ? PRD_002526 C14 C14 C 0 1 Y N N 22.092 6.729 22.102 2.395 1.455 -2.058 PHE 2 CD1 polymer 1 1 18 ? ? ? PRD_002526 C15 C15 C 0 1 Y N N 19.924 5.706 22.264 0.476 2.885 -1.987 PHE 2 CD2 polymer 1 1 19 ? ? ? PRD_002526 C16 C16 C 0 1 Y N N 21.637 7.516 21.047 3.216 2.563 -2.159 PHE 2 CE1 polymer 1 1 20 ? ? ? PRD_002526 C17 C17 C 0 1 Y N N 19.468 6.504 21.195 1.297 3.992 -2.088 PHE 2 CE2 polymer 1 1 21 ? ? ? PRD_002526 C18 C18 C 0 1 Y N N 20.338 7.373 20.579 2.668 3.832 -2.171 PHE 2 CZ polymer 1 1 22 ? ? ? PRD_002526 N3 N3 N 0 1 N N N 24.444 2.819 23.879 -2.317 -0.920 -0.743 ARM 3 N polymer 1 1 23 ? ? ? PRD_002526 C19 C19 C 0 1 N N S 25.335 1.894 24.570 -3.281 -2.018 -0.631 ARM 3 CA polymer 1 1 24 ? ? ? PRD_002526 C20 C20 C 0 1 N N N 26.358 1.497 23.506 -4.702 -1.451 -0.639 ARM 3 CB polymer 1 1 25 ? ? ? PRD_002526 C21 C21 C 0 1 N N N 25.724 0.526 22.494 -4.916 -0.595 0.611 ARM 3 CG polymer 1 1 26 ? ? ? PRD_002526 C22 C22 C 0 1 N N N 26.678 0.327 21.311 -6.338 -0.029 0.604 ARM 3 CD polymer 1 1 27 ? ? ? PRD_002526 N4 N4 N 0 1 N N N 26.062 -0.599 20.346 -6.543 0.790 1.801 ARM 3 NE polymer 1 1 28 ? ? ? PRD_002526 C23 C23 C 0 1 N N N 26.585 -0.873 19.140 -7.753 1.407 2.013 ARM 3 CZ polymer 1 1 29 ? ? ? PRD_002526 N5 N5 N 0 1 N N N 26.023 -1.891 18.471 -8.718 1.262 1.148 ARM 3 NH1 polymer 1 1 30 ? ? ? PRD_002526 N6 N6 N 0 1 N N N 27.557 -0.192 18.620 -7.946 2.176 3.136 ARM 3 NH2 polymer 1 1 31 ? ? ? PRD_002526 C24 C24 C 0 1 N N N 26.040 2.362 25.813 -3.109 -2.958 -1.796 ARM 3 C polymer 1 1 32 ? ? ? PRD_002526 O3 O3 O 0 1 N N N 26.659 1.551 26.524 -2.474 -2.611 -2.764 ARM 3 O polymer 1 1 33 ? ? ? PRD_002526 C25 C25 C 0 1 N N N 25.175 3.159 26.786 -3.728 -4.331 -1.755 ARM 3 CM polymer 1 1 34 ? ? ? PRD_002526 H1 H1 H 0 1 N N N 19.900 -0.469 20.064 4.041 2.075 1.588 DPN 1 H polymer 1 1 35 ? ? ? PRD_002526 H2 H2 H 0 1 N Y N 21.397 0.104 19.751 3.284 1.402 2.907 DPN 1 H2 polymer 1 1 36 ? ? ? PRD_002526 H3 H3 H 0 1 N N N 19.497 1.223 21.715 3.228 -0.745 1.876 DPN 1 HA polymer 1 1 37 ? ? ? PRD_002526 H4 H4 H 0 1 N N N 19.588 3.183 20.250 3.952 -0.882 -0.526 DPN 1 HB2 polymer 1 1 38 ? ? ? PRD_002526 H5 H5 H 0 1 N N N 20.702 2.316 19.139 4.591 0.774 -0.392 DPN 1 HB3 polymer 1 1 39 ? ? ? PRD_002526 H6 H6 H 0 1 N N N 19.862 0.897 17.437 5.013 -2.722 0.651 DPN 1 HD1 polymer 1 1 40 ? ? ? PRD_002526 H7 H7 H 0 1 N N N 17.245 2.274 20.551 6.549 1.245 0.961 DPN 1 HD2 polymer 1 1 41 ? ? ? PRD_002526 H8 H8 H 0 1 N N N 17.870 0.125 16.117 7.096 -3.604 1.625 DPN 1 HE1 polymer 1 1 42 ? ? ? PRD_002526 H9 H9 H 0 1 N N N 15.312 1.392 19.281 8.631 0.363 1.934 DPN 1 HE2 polymer 1 1 43 ? ? ? PRD_002526 H10 H10 H 0 1 N N N 15.627 0.350 17.103 8.903 -2.062 2.271 DPN 1 HZ polymer 1 1 44 ? ? ? PRD_002526 H11 H11 H 0 1 N N N 20.309 3.053 22.815 1.437 -1.295 0.247 PHE 2 H polymer 1 1 45 ? ? ? PRD_002526 H12 H12 H 0 1 N N N 23.012 4.003 22.361 -0.452 0.930 0.148 PHE 2 HA polymer 1 1 46 ? ? ? PRD_002526 H13 H13 H 0 1 N N N 20.887 4.654 24.437 0.592 -0.433 -2.374 PHE 2 HB2 polymer 1 1 47 ? ? ? PRD_002526 H14 H14 H 0 1 N N N 22.492 5.459 24.367 -0.835 0.629 -2.317 PHE 2 HB3 polymer 1 1 48 ? ? ? PRD_002526 H15 H15 H 0 1 N N N 23.117 6.811 22.433 2.824 0.464 -2.048 PHE 2 HD1 polymer 1 1 49 ? ? ? PRD_002526 H16 H16 H 0 1 N N N 19.258 4.990 22.722 -0.595 3.011 -1.923 PHE 2 HD2 polymer 1 1 50 ? ? ? PRD_002526 H17 H17 H 0 1 N N N 22.297 8.240 20.592 4.287 2.437 -2.227 PHE 2 HE1 polymer 1 1 51 ? ? ? PRD_002526 H18 H18 H 0 1 N N N 18.443 6.433 20.862 0.868 4.983 -2.102 PHE 2 HE2 polymer 1 1 52 ? ? ? PRD_002526 H19 H19 H 0 1 N N N 20.009 7.948 19.726 3.309 4.697 -2.250 PHE 2 HZ polymer 1 1 53 ? ? ? PRD_002526 H20 H20 H 0 1 N N N 24.829 3.464 23.219 -2.580 -0.084 -1.159 ARM 3 H polymer 1 1 54 ? ? ? PRD_002526 H21 H21 H 0 1 N N N 24.762 0.991 24.829 -3.109 -2.558 0.300 ARM 3 HA polymer 1 1 55 ? ? ? PRD_002526 H22 H22 H 0 1 N N N 26.701 2.399 22.978 -4.844 -0.837 -1.528 ARM 3 HB2 polymer 1 1 56 ? ? ? PRD_002526 H23 H23 H 0 1 N N N 27.215 1.007 23.991 -5.420 -2.272 -0.645 ARM 3 HB3 polymer 1 1 57 ? ? ? PRD_002526 H24 H24 H 0 1 N N N 25.538 -0.442 22.982 -4.774 -1.209 1.501 ARM 3 HG2 polymer 1 1 58 ? ? ? PRD_002526 H25 H25 H 0 1 N N N 24.773 0.943 22.132 -4.198 0.225 0.618 ARM 3 HG3 polymer 1 1 59 ? ? ? PRD_002526 H26 H26 H 0 1 N N N 26.867 1.295 20.824 -6.479 0.585 -0.285 ARM 3 HD2 polymer 1 1 60 ? ? ? PRD_002526 H27 H27 H 0 1 N N N 27.628 -0.094 21.671 -7.056 -0.849 0.598 ARM 3 HD3 polymer 1 1 61 ? ? ? PRD_002526 H28 H28 H 0 1 N N N 25.207 -1.049 20.603 -5.825 0.898 2.444 ARM 3 HE polymer 1 1 62 ? ? ? PRD_002526 H29 H29 H 0 1 N N N 26.444 -2.028 17.574 -9.572 1.697 1.298 ARM 3 HH1 polymer 1 1 63 ? ? ? PRD_002526 H30 H30 H 0 0 N N N 27.898 -0.423 17.709 -7.228 2.284 3.779 ARM 3 HH21 polymer 1 1 64 ? ? ? PRD_002526 H31 H31 H 0 0 N N N 27.967 0.564 19.130 -8.800 2.611 3.285 ARM 3 HH22 polymer 1 1 65 ? ? ? PRD_002526 H32 H32 H 0 1 N N N 25.344 2.795 27.810 -4.257 -4.462 -0.811 ARM 3 HM1 polymer 1 1 66 ? ? ? PRD_002526 H33 H33 H 0 1 N N N 25.443 4.224 26.726 -4.430 -4.438 -2.582 ARM 3 HM2 polymer 1 1 67 ? ? ? PRD_002526 H34 H34 H 0 1 N N N 24.115 3.032 26.522 -2.946 -5.085 -1.841 ARM 3 HM3 polymer 1 1 68 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_002526 N1 C1 SING N N 1 PRD_002526 N1 H1 SING N N 2 PRD_002526 N1 H2 SING N N 3 PRD_002526 C1 C2 SING N N 4 PRD_002526 C1 C3 SING N N 5 PRD_002526 C1 H3 SING N N 6 PRD_002526 C2 O1 DOUB N N 7 PRD_002526 C3 C4 SING N N 8 PRD_002526 C3 H4 SING N N 9 PRD_002526 C3 H5 SING N N 10 PRD_002526 C4 C5 DOUB Y N 11 PRD_002526 C4 C6 SING Y N 12 PRD_002526 C5 C7 SING Y N 13 PRD_002526 C5 H6 SING N N 14 PRD_002526 C6 C8 DOUB Y N 15 PRD_002526 C6 H7 SING N N 16 PRD_002526 C7 C9 DOUB Y N 17 PRD_002526 C7 H8 SING N N 18 PRD_002526 C8 C9 SING Y N 19 PRD_002526 C8 H9 SING N N 20 PRD_002526 C9 H10 SING N N 21 PRD_002526 N2 C10 SING N N 22 PRD_002526 N2 H11 SING N N 23 PRD_002526 C10 C11 SING N N 24 PRD_002526 C10 C12 SING N N 25 PRD_002526 C10 H12 SING N N 26 PRD_002526 C11 O2 DOUB N N 27 PRD_002526 C12 C13 SING N N 28 PRD_002526 C12 H13 SING N N 29 PRD_002526 C12 H14 SING N N 30 PRD_002526 C13 C14 DOUB Y N 31 PRD_002526 C13 C15 SING Y N 32 PRD_002526 C14 C16 SING Y N 33 PRD_002526 C14 H15 SING N N 34 PRD_002526 C15 C17 DOUB Y N 35 PRD_002526 C15 H16 SING N N 36 PRD_002526 C16 C18 DOUB Y N 37 PRD_002526 C16 H17 SING N N 38 PRD_002526 C17 C18 SING Y N 39 PRD_002526 C17 H18 SING N N 40 PRD_002526 C18 H19 SING N N 41 PRD_002526 N3 C19 SING N N 42 PRD_002526 N3 H20 SING N N 43 PRD_002526 C19 C20 SING N N 44 PRD_002526 C19 C24 SING N N 45 PRD_002526 C19 H21 SING N N 46 PRD_002526 C20 C21 SING N N 47 PRD_002526 C20 H22 SING N N 48 PRD_002526 C20 H23 SING N N 49 PRD_002526 C21 C22 SING N N 50 PRD_002526 C21 H24 SING N N 51 PRD_002526 C21 H25 SING N N 52 PRD_002526 C22 N4 SING N N 53 PRD_002526 C22 H26 SING N N 54 PRD_002526 C22 H27 SING N N 55 PRD_002526 N4 C23 SING N N 56 PRD_002526 N4 H28 SING N N 57 PRD_002526 C23 N5 DOUB N N 58 PRD_002526 C23 N6 SING N N 59 PRD_002526 N5 H29 SING N N 60 PRD_002526 N6 H30 SING N N 61 PRD_002526 N6 H31 SING N N 62 PRD_002526 C24 O3 DOUB N N 63 PRD_002526 C24 C25 SING N N 64 PRD_002526 C25 H32 SING N N 65 PRD_002526 C25 H33 SING N N 66 PRD_002526 C25 H34 SING N N 67 PRD_002526 C2 N2 SING N N 68 PRD_002526 C11 N3 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_002526 InChI InChI 1.06 "InChI=1S/C25H34N6O3/c1-17(32)21(13-8-14-29-25(27)28)30-24(34)22(16-19-11-6-3-7-12-19)31-23(33)20(26)15-18-9-4-2-5-10-18/h2-7,9-12,20-22H,8,13-16,26H2,1H3,(H,30,34)(H,31,33)(H4,27,28,29)/t20-,21+,22+/m1/s1" PRD_002526 InChIKey InChI 1.06 IMDKGXZMDWBUQJ-FSSWDIPSSA-N PRD_002526 SMILES_CANONICAL CACTVS 3.385 "CC(=O)[C@H](CCCNC(N)=N)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](N)Cc2ccccc2" PRD_002526 SMILES CACTVS 3.385 "CC(=O)[CH](CCCNC(N)=N)NC(=O)[CH](Cc1ccccc1)NC(=O)[CH](N)Cc2ccccc2" PRD_002526 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/NCCC[C@@H](C(=O)C)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@@H](Cc2ccccc2)N" PRD_002526 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)C(CCCNC(=N)N)NC(=O)C(Cc1ccccc1)NC(=O)C(Cc2ccccc2)N" # _pdbx_chem_comp_identifier.comp_id PRD_002526 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-azanyl-~{N}-[(2~{S})-1-[[(3~{S})-6-carbamimidamido-2-oxidanylidene-hexan-3-yl]amino]-1-oxidanylidene-3-phenyl-propan-2-yl]-3-phenyl-propanamide" #