data_PRDCC_900049 # _chem_comp.id PRD_900049 _chem_comp.name "6-deoxy-alpha-L-galactopyranosyl-(1->2)-beta-D-galactopyranosyl-(1->3)-2-(acetylamino)-2-deoxy-beta-D-glucopyranose" _chem_comp.type saccharide _chem_comp.formula "C20 H35 N O15" _chem_comp.pdbx_release_status REF_ONLY _chem_comp.formula_weight 529.490 _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_900049 CBI C17 C 0 1 N N R 17.633 68.356 47.845 -2.971 2.524 -0.839 NAG 1 C1 polymer 1 1 1 ? ? ? PRD_900049 CBS C18 C 0 1 N N R 16.983 67.078 47.308 -1.639 1.879 -0.445 NAG 1 C2 polymer 1 1 2 ? ? ? PRD_900049 CBV C13 C 0 1 N N R 17.946 66.349 46.367 -1.859 0.384 -0.196 NAG 1 C3 polymer 1 1 3 ? ? ? PRD_900049 CBU C14 C 0 1 N N S 18.423 67.308 45.273 -2.931 0.210 0.885 NAG 1 C4 polymer 1 1 4 ? ? ? PRD_900049 CBK C15 C 0 1 N N R 18.999 68.580 45.901 -4.213 0.920 0.440 NAG 1 C5 polymer 1 1 5 ? ? ? PRD_900049 CAV C16 C 0 1 N N N 19.413 69.561 44.802 -5.269 0.802 1.540 NAG 1 C6 polymer 1 1 6 ? ? ? PRD_900049 CBF C19 C 0 1 N N N 15.338 65.836 48.674 0.073 3.180 -1.592 NAG 1 C7 polymer 1 1 7 ? ? ? PRD_900049 CAB C20 C 0 1 N N N 14.252 66.826 48.244 0.982 3.417 -2.770 NAG 1 C8 polymer 1 1 8 ? ? ? PRD_900049 NAX N1 N 0 1 N N N 16.594 66.197 48.420 -0.670 2.057 -1.529 NAG 1 N2 polymer 1 1 9 ? ? ? PRD_900049 OAH O14 O 0 1 N N N 16.706 69.047 48.686 -2.784 3.930 -1.019 NAG 1 O1 polymer 1 1 10 ? ? ? PRD_900049 "O1'" O10 O 0 1 N N N 17.326 65.188 45.796 -0.637 -0.213 0.243 NAG 1 O3 polymer 1 1 11 ? ? ? PRD_900049 OAE O11 O 0 1 N N N 19.427 66.664 44.483 -3.197 -1.181 1.075 NAG 1 O4 polymer 1 1 12 ? ? ? PRD_900049 OBA O13 O 0 1 N N N 18.016 69.201 46.747 -3.931 2.299 0.195 NAG 1 O5 polymer 1 1 13 ? ? ? PRD_900049 OAG O12 O 0 1 N N N 18.273 69.907 44.012 -6.501 1.362 1.080 NAG 1 O6 polymer 1 1 14 ? ? ? PRD_900049 OAD O15 O 0 1 N N N 15.091 65.010 49.725 0.009 3.999 -0.700 NAG 1 O7 polymer 1 1 15 ? ? ? PRD_900049 "C1'" C12 C 0 1 N N R 17.801 64.002 46.451 -0.267 -1.384 -0.486 GAL 2 C1 polymer 1 1 16 ? ? ? PRD_900049 "C2'" C7 C 0 1 N N R 16.907 62.837 46.054 1.127 -1.840 -0.047 GAL 2 C2 polymer 1 1 17 ? ? ? PRD_900049 "C3'" C8 C 0 1 N N S 17.450 61.572 46.724 1.491 -3.130 -0.790 GAL 2 C3 polymer 1 1 18 ? ? ? PRD_900049 "C4'" C9 C 0 1 N N R 18.922 61.357 46.362 0.419 -4.187 -0.510 GAL 2 C4 polymer 1 1 19 ? ? ? PRD_900049 "C5'" C10 C 0 1 N N R 19.721 62.612 46.725 -0.948 -3.640 -0.931 GAL 2 C5 polymer 1 1 20 ? ? ? PRD_900049 "C6'" C11 C 0 1 N N N 21.188 62.447 46.322 -2.033 -4.667 -0.599 GAL 2 C6 polymer 1 1 21 ? ? ? PRD_900049 "O2'" O5 O 0 1 N N N 15.566 63.106 46.494 2.082 -0.824 -0.359 GAL 2 O2 polymer 1 1 22 ? ? ? PRD_900049 "O3'" O6 O 0 1 N N N 16.683 60.440 46.307 2.760 -3.602 -0.332 GAL 2 O3 polymer 1 1 23 ? ? ? PRD_900049 "O4'" O7 O 0 1 N N N 19.037 61.102 44.959 0.401 -4.492 0.886 GAL 2 O4 polymer 1 1 24 ? ? ? PRD_900049 "O5'" O9 O 0 1 N N N 19.158 63.746 46.046 -1.211 -2.425 -0.227 GAL 2 O5 polymer 1 1 25 ? ? ? PRD_900049 "O6'" O8 O 0 1 N N N 21.913 63.629 46.672 -3.291 -4.208 -1.097 GAL 2 O6 polymer 1 1 26 ? ? ? PRD_900049 CBQ C6 C 0 1 N N S 14.597 62.443 45.667 3.194 -0.778 0.536 FUC 3 C1 polymer 1 1 27 ? ? ? PRD_900049 CBO C1 C 0 1 N N S 13.201 62.643 46.264 4.298 0.096 -0.066 FUC 3 C2 polymer 1 1 28 ? ? ? PRD_900049 CBN C2 C 0 1 N N R 12.814 64.124 46.234 3.775 1.526 -0.230 FUC 3 C3 polymer 1 1 29 ? ? ? PRD_900049 CBL C3 C 0 1 N N S 12.962 64.682 44.817 3.301 2.044 1.131 FUC 3 C4 polymer 1 1 30 ? ? ? PRD_900049 CBH C4 C 0 1 N N S 14.374 64.395 44.296 2.235 1.095 1.687 FUC 3 C5 polymer 1 1 31 ? ? ? PRD_900049 CAC C5 C 0 1 N N N 14.530 64.915 42.866 1.800 1.574 3.073 FUC 3 C6 polymer 1 1 32 ? ? ? PRD_900049 OAL O1 O 0 1 N N N 13.161 62.151 47.606 4.676 -0.424 -1.342 FUC 3 O2 polymer 1 1 33 ? ? ? PRD_900049 OAK O2 O 0 1 N N N 11.460 64.275 46.670 4.821 2.365 -0.723 FUC 3 O3 polymer 1 1 34 ? ? ? PRD_900049 OAI O3 O 0 1 N N N 11.993 64.074 43.959 4.408 2.100 2.033 FUC 3 O4 polymer 1 1 35 ? ? ? PRD_900049 OBB O4 O 0 1 N N N 14.634 62.981 44.332 2.778 -0.223 1.786 FUC 3 O5 polymer 1 1 36 ? ? ? PRD_900049 HBI H29 H 0 1 N N N 18.525 68.075 48.425 -3.328 2.082 -1.769 NAG 1 H1 polymer 1 1 37 ? ? ? PRD_900049 HBS H31 H 0 1 N N N 16.085 67.358 46.737 -1.261 2.348 0.463 NAG 1 H2 polymer 1 1 38 ? ? ? PRD_900049 HBV H22 H 0 1 N N N 18.824 66.039 46.953 -2.189 -0.096 -1.117 NAG 1 H3 polymer 1 1 39 ? ? ? PRD_900049 HBU H23 H 0 1 N N N 17.564 67.582 44.643 -2.579 0.645 1.820 NAG 1 H4 polymer 1 1 40 ? ? ? PRD_900049 HBK H25 H 0 1 N N N 19.888 68.312 46.490 -4.586 0.457 -0.474 NAG 1 H5 polymer 1 1 41 ? ? ? PRD_900049 HAV1 H26 H 0 1 N N N 19.830 70.470 45.261 -5.418 -0.248 1.790 NAG 1 H61 polymer 1 1 42 ? ? ? PRD_900049 HAV2 H27 H 0 1 N N N 20.174 69.092 44.161 -4.933 1.342 2.426 NAG 1 H62 polymer 1 1 43 ? ? ? PRD_900049 HAB1 H33 H 0 1 N N N 13.373 66.713 48.896 0.845 2.621 -3.501 NAG 1 H81 polymer 1 1 44 ? ? ? PRD_900049 HAB2 H34 H 0 1 N N N 14.639 67.853 48.326 0.741 4.376 -3.228 NAG 1 H82 polymer 1 1 45 ? ? ? PRD_900049 HAB3 H35 H 0 1 N N N 13.964 66.624 47.202 2.019 3.426 -2.433 NAG 1 H83 polymer 1 1 46 ? ? ? PRD_900049 HAX H32 H 0 1 N N N 17.315 65.849 49.020 -0.562 1.366 -2.202 NAG 1 HN2 polymer 1 1 47 ? ? ? PRD_900049 HAH H30 H 0 1 N N N 16.455 68.486 49.410 -3.589 4.404 -1.269 NAG 1 HO1 polymer 1 1 48 ? ? ? PRD_900049 HAE H24 H 0 1 N N N 19.725 67.257 43.803 -3.867 -1.365 1.747 NAG 1 HO4 polymer 1 1 49 ? ? ? PRD_900049 HAG H28 H 0 1 N N N 18.532 70.516 43.331 -7.218 1.322 1.728 NAG 1 HO6 polymer 1 1 50 ? ? ? PRD_900049 "H1'" H21 H 0 1 N N N 17.753 64.130 47.542 -0.257 -1.160 -1.553 GAL 2 H1 polymer 1 1 51 ? ? ? PRD_900049 "H2'" H12 H 0 1 N N N 16.937 62.710 44.962 1.129 -2.025 1.027 GAL 2 H2 polymer 1 1 52 ? ? ? PRD_900049 "H3'" H13 H 0 1 N N N 17.373 61.694 47.814 1.540 -2.932 -1.861 GAL 2 H3 polymer 1 1 53 ? ? ? PRD_900049 "H4'" H15 H 0 1 N N N 19.312 60.505 46.939 0.641 -5.090 -1.078 GAL 2 H4 polymer 1 1 54 ? ? ? PRD_900049 "H5'" H17 H 0 1 N N N 19.668 62.761 47.814 -0.947 -3.446 -2.004 GAL 2 H5 polymer 1 1 55 ? ? ? PRD_900049 "H6'1" H18 H 0 1 N N N 21.618 61.583 46.849 -1.784 -5.621 -1.064 GAL 2 H61 polymer 1 1 56 ? ? ? PRD_900049 "H6'2" H19 H 0 1 N N N 21.254 62.284 45.236 -2.094 -4.795 0.481 GAL 2 H62 polymer 1 1 57 ? ? ? PRD_900049 H2 H14 H 0 1 N N N 17.022 59.656 46.724 3.053 -4.418 -0.761 GAL 2 HO3 polymer 1 1 58 ? ? ? PRD_900049 H1 H16 H 0 1 N N N 19.950 60.969 44.735 -0.256 -5.156 1.135 GAL 2 HO4 polymer 1 1 59 ? ? ? PRD_900049 "H6'" H20 H 0 1 N N N 22.824 63.528 46.422 -4.027 -4.811 -0.922 GAL 2 HO6 polymer 1 1 60 ? ? ? PRD_900049 HBQ H11 H 0 1 N N N 14.811 61.364 45.637 3.575 -1.786 0.696 FUC 3 H1 polymer 1 1 61 ? ? ? PRD_900049 HBO H2 H 0 1 N N N 12.480 62.087 45.647 5.164 0.099 0.597 FUC 3 H2 polymer 1 1 62 ? ? ? PRD_900049 HBN H3 H 0 1 N N N 13.489 64.678 46.903 2.942 1.530 -0.934 FUC 3 H3 polymer 1 1 63 ? ? ? PRD_900049 HBL H5 H 0 1 N N N 12.811 65.771 44.848 2.876 3.041 1.013 FUC 3 H4 polymer 1 1 64 ? ? ? PRD_900049 HBH H7 H 0 1 N N N 15.095 64.921 44.939 1.374 1.085 1.019 FUC 3 H5 polymer 1 1 65 ? ? ? PRD_900049 HAC1 H10 H 0 1 N N N 14.356 66.001 42.850 2.672 1.646 3.723 FUC 3 H61 polymer 1 1 66 ? ? ? PRD_900049 HAC2 H8 H 0 1 N N N 15.548 64.702 42.507 1.327 2.552 2.989 FUC 3 H62 polymer 1 1 67 ? ? ? PRD_900049 HAC3 H9 H 0 1 N N N 13.799 64.416 42.213 1.090 0.863 3.496 FUC 3 H63 polymer 1 1 68 ? ? ? PRD_900049 HAL H1 H 0 1 N N N 13.402 61.232 47.614 5.018 -1.329 -1.313 FUC 3 HO2 polymer 1 1 69 ? ? ? PRD_900049 HAK H4 H 0 1 N N N 11.221 65.194 46.651 5.174 2.090 -1.581 FUC 3 HO3 polymer 1 1 70 ? ? ? PRD_900049 HAI H6 H 0 1 N N N 12.086 64.421 43.080 4.202 2.510 2.884 FUC 3 HO4 polymer 1 1 71 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_900049 OAL CBO SING N N 1 PRD_900049 CBO CBN SING N N 2 PRD_900049 CBO CBQ SING N N 3 PRD_900049 CBN OAK SING N N 4 PRD_900049 CBN CBL SING N N 5 PRD_900049 CBL OAI SING N N 6 PRD_900049 CBL CBH SING N N 7 PRD_900049 CBH CAC SING N N 8 PRD_900049 CBH OBB SING N N 9 PRD_900049 OBB CBQ SING N N 10 PRD_900049 CBQ "O2'" SING N N 11 PRD_900049 "O2'" "C2'" SING N N 12 PRD_900049 "C2'" "C3'" SING N N 13 PRD_900049 "C2'" "C1'" SING N N 14 PRD_900049 "C3'" "O3'" SING N N 15 PRD_900049 "C3'" "C4'" SING N N 16 PRD_900049 "C4'" "O4'" SING N N 17 PRD_900049 "C4'" "C5'" SING N N 18 PRD_900049 "C5'" "C6'" SING N N 19 PRD_900049 "C5'" "O5'" SING N N 20 PRD_900049 "C6'" "O6'" SING N N 21 PRD_900049 "O5'" "C1'" SING N N 22 PRD_900049 "C1'" "O1'" SING N N 23 PRD_900049 "O1'" CBV SING N N 24 PRD_900049 CBV CBU SING N N 25 PRD_900049 CBV CBS SING N N 26 PRD_900049 CBU OAE SING N N 27 PRD_900049 CBU CBK SING N N 28 PRD_900049 CBK OBA SING N N 29 PRD_900049 CBK CAV SING N N 30 PRD_900049 CAV OAG SING N N 31 PRD_900049 OBA CBI SING N N 32 PRD_900049 CBI CBS SING N N 33 PRD_900049 CBI OAH SING N N 34 PRD_900049 CBS NAX SING N N 35 PRD_900049 NAX CBF SING N N 36 PRD_900049 CBF CAB SING N N 37 PRD_900049 CBF OAD DOUB N N 38 PRD_900049 OAL HAL SING N N 39 PRD_900049 CBO HBO SING N N 40 PRD_900049 CBN HBN SING N N 41 PRD_900049 OAK HAK SING N N 42 PRD_900049 CBL HBL SING N N 43 PRD_900049 OAI HAI SING N N 44 PRD_900049 CBH HBH SING N N 45 PRD_900049 CAC HAC2 SING N N 46 PRD_900049 CAC HAC3 SING N N 47 PRD_900049 CAC HAC1 SING N N 48 PRD_900049 CBQ HBQ SING N N 49 PRD_900049 "C2'" "H2'" SING N N 50 PRD_900049 "C3'" "H3'" SING N N 51 PRD_900049 "O3'" H2 SING N N 52 PRD_900049 "C4'" "H4'" SING N N 53 PRD_900049 "O4'" H1 SING N N 54 PRD_900049 "C5'" "H5'" SING N N 55 PRD_900049 "C6'" "H6'1" SING N N 56 PRD_900049 "C6'" "H6'2" SING N N 57 PRD_900049 "O6'" "H6'" SING N N 58 PRD_900049 "C1'" "H1'" SING N N 59 PRD_900049 CBV HBV SING N N 60 PRD_900049 CBU HBU SING N N 61 PRD_900049 OAE HAE SING N N 62 PRD_900049 CBK HBK SING N N 63 PRD_900049 CAV HAV1 SING N N 64 PRD_900049 CAV HAV2 SING N N 65 PRD_900049 OAG HAG SING N N 66 PRD_900049 CBI HBI SING N N 67 PRD_900049 OAH HAH SING N N 68 PRD_900049 CBS HBS SING N N 69 PRD_900049 NAX HAX SING N N 70 PRD_900049 CAB HAB1 SING N N 71 PRD_900049 CAB HAB2 SING N N 72 PRD_900049 CAB HAB3 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_900049 SMILES ACDLabs 12.01 "O=C(NC3C(OC2OC(C(O)C(O)C2OC1OC(C)C(O)C(O)C1O)CO)C(O)C(OC3O)CO)C" PRD_900049 InChI InChI 1.03 ;InChI=1S/C20H35NO15/c1-5-10(25)13(28)15(30)19(32-5)36-17-14(29)11(26)7(3-22)34-20(17)35-16-9(21-6(2)24)18(31)33-8(4-23) 12(16)27/h5,7-20,22-23,25-31H,3-4H2,1-2H3,(H,21,24)/t5-,7+,8+,9+,10+,11-,12+,13+,14-,15-,16+,17+,18+,19-,20-/m0/s1 ; PRD_900049 InChIKey InChI 1.03 MGSDFCKWGHNUSM-QVPNGJTFSA-N PRD_900049 SMILES_CANONICAL CACTVS 3.370 ;C[C@@H]1O[C@@H](O[C@@H]2[C@@H](O)[C@@H](O)[C@@H](CO)O[C@H]2O[C@H]3[C@H](O)[C@@H](CO)O[C@@H](O)[C@@H]3NC(C)=O)[C@@H](O)[ C@H](O)[C@@H]1O ; PRD_900049 SMILES CACTVS 3.370 "C[CH]1O[CH](O[CH]2[CH](O)[CH](O)[CH](CO)O[CH]2O[CH]3[CH](O)[CH](CO)O[CH](O)[CH]3NC(C)=O)[CH](O)[CH](O)[CH]1O" PRD_900049 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1C(C(C(C(O1)OC2C(C(C(OC2OC3C(C(OC(C3O)CO)O)NC(=O)C)CO)O)O)O)O)O" PRD_900049 SMILES "OpenEye OEToolkits" 1.7.6 "CC1C(C(C(C(O1)OC2C(C(C(OC2OC3C(C(OC(C3O)CO)O)NC(=O)C)CO)O)O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_900049 "SYSTEMATIC NAME" ACDLabs 12.01 "6-deoxy-alpha-L-galactopyranosyl-(1->2)-beta-D-galactopyranosyl-(1->3)-2-(acetylamino)-2-deoxy-beta-D-glucopyranose" PRD_900049 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 ;N-[6-(hydroxymethyl)-4-[6-(hydroxymethyl)-3-[6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,5-bis(oxidanyl)oxan-2-yl]oxy- 2,5-bis(oxidanyl)oxan-3-yl]ethanamide ; #