data_PRDCC_900071 # _chem_comp.id PRD_900071 _chem_comp.name ;[(2~{R},3~{S},4~{R},5~{R},6~{R})-2-[[(2~{S},3~{S},4~{R},5~{S},6~{R})-3,6-bis(oxidanyl)-4,5-disulfooxy-oxan-2-yl]methoxy ]-6-(hydroxymethyl)-3,5-disulfooxy-oxan-4-yl] hydrogen sulfate ; _chem_comp.type saccharide _chem_comp.formula "C12 H22 O26 S5" _chem_comp.pdbx_release_status REF_ONLY _chem_comp.formula_weight 742.612 _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_900071 C08 C4 C 0 1 N N N -58.128 27.116 -51.884 -0.695 0.844 -0.488 TWD 1 C6 polymer 1 1 1 ? ? ? PRD_900071 C09 C5 C 0 1 N N S -58.077 28.598 -52.350 -2.061 0.482 0.099 TWD 1 C5 polymer 1 1 2 ? ? ? PRD_900071 C11 C6 C 0 1 N N R -56.000 29.981 -51.755 -3.488 -1.384 0.581 TWD 1 C1 polymer 1 1 3 ? ? ? PRD_900071 C13 C7 C 0 1 N N S -56.649 30.227 -50.408 -4.648 -0.761 -0.202 TWD 1 C2 polymer 1 1 4 ? ? ? PRD_900071 C19 C8 C 0 1 N N R -58.088 30.577 -50.592 -4.529 0.765 -0.147 TWD 1 C3 polymer 1 1 5 ? ? ? PRD_900071 C25 C9 C 0 1 N N S -58.834 29.489 -51.353 -3.163 1.180 -0.703 TWD 1 C4 polymer 1 1 6 ? ? ? PRD_900071 O07 O3 O 0 1 N N N -58.458 26.195 -52.995 0.337 0.289 0.329 TWD 1 O6 polymer 1 1 7 ? ? ? PRD_900071 O10 O4 O 0 1 N N N -56.665 28.945 -52.645 -2.248 -0.933 0.032 TWD 1 O5 polymer 1 1 8 ? ? ? PRD_900071 O12 O5 O 0 1 N N N -55.749 31.162 -52.396 -3.574 -0.992 1.952 TWD 1 O1 polymer 1 1 9 ? ? ? PRD_900071 O14 O6 O 0 1 N N N -55.885 31.279 -49.719 -5.888 -1.165 0.381 TWD 1 O2 polymer 1 1 10 ? ? ? PRD_900071 O16 O7 O 0 1 N N N -54.704 30.387 -47.412 -5.725 -3.600 0.167 TWD 1 O16 polymer 1 1 11 ? ? ? PRD_900071 O17 O8 O 0 1 N N N -53.362 32.133 -49.004 -7.816 -2.518 0.277 TWD 1 O17 polymer 1 1 12 ? ? ? PRD_900071 O18 O9 O 0 1 N N N -53.706 29.601 -49.841 -6.284 -2.243 -1.678 TWD 1 O18 polymer 1 1 13 ? ? ? PRD_900071 O20 O10 O 0 1 N N N -58.763 30.640 -49.305 -5.564 1.353 -0.936 TWD 1 O3 polymer 1 1 14 ? ? ? PRD_900071 O22 O11 O 0 1 N N N -57.492 32.184 -47.504 -6.151 2.501 1.038 TWD 1 O22 polymer 1 1 15 ? ? ? PRD_900071 O23 O12 O 0 1 N N N -60.180 32.058 -47.449 -5.062 3.735 -0.650 TWD 1 O23 polymer 1 1 16 ? ? ? PRD_900071 O24 O13 O 0 1 N N N -58.960 33.361 -49.494 -7.242 2.995 -1.156 TWD 1 O24 polymer 1 1 17 ? ? ? PRD_900071 O26 O14 O 0 1 N N N -60.025 30.031 -51.946 -3.012 2.596 -0.590 TWD 1 O4 polymer 1 1 18 ? ? ? PRD_900071 S15 S1 S 0 1 N N N -54.420 30.856 -49.008 -6.517 -2.381 -0.283 TWD 1 S15 polymer 1 1 19 ? ? ? PRD_900071 S21 S2 S 0 1 N N N -58.853 32.073 -48.452 -6.104 2.661 -0.373 TWD 1 S21 polymer 1 1 20 ? ? ? PRD_900071 C03 C1 C 0 1 N N N -58.737 21.600 -54.513 3.255 -0.526 -3.322 TWA 2 C6 polymer 1 1 21 ? ? ? PRD_900071 C04 C2 C 0 1 N N R -57.837 22.634 -53.933 3.157 0.175 -1.966 TWA 2 C5 polymer 1 1 22 ? ? ? PRD_900071 C06 C3 C 0 1 N N R -57.950 24.866 -52.907 1.659 0.570 -0.134 TWA 2 C1 polymer 1 1 23 ? ? ? PRD_900071 C31 C10 C 0 1 N N S -57.825 24.267 -51.500 2.678 0.037 0.877 TWA 2 C2 polymer 1 1 24 ? ? ? PRD_900071 C37 C11 C 0 1 N N R -56.869 23.092 -51.590 4.093 0.289 0.345 TWA 2 C3 polymer 1 1 25 ? ? ? PRD_900071 C43 C12 C 0 1 N N R -57.273 22.089 -52.615 4.236 -0.374 -1.028 TWA 2 C4 polymer 1 1 26 ? ? ? PRD_900071 O02 O1 O 0 1 N N N -59.373 22.141 -55.652 2.328 0.068 -4.234 TWA 2 O6 polymer 1 1 27 ? ? ? PRD_900071 O05 O2 O 0 1 N N N -58.622 23.926 -53.801 1.867 -0.065 -1.398 TWA 2 O5 polymer 1 1 28 ? ? ? PRD_900071 O32 O15 O 0 1 N N N -59.129 23.805 -51.067 2.480 -1.366 1.060 TWA 2 O2 polymer 1 1 29 ? ? ? PRD_900071 O34 O16 O 0 1 N N N -58.094 23.893 -48.508 0.163 -1.401 1.856 TWA 2 O34 polymer 1 1 30 ? ? ? PRD_900071 O35 O17 O 0 1 N N N -59.542 21.757 -49.321 1.673 -3.126 2.404 TWA 2 O35 polymer 1 1 31 ? ? ? PRD_900071 O36 O18 O 0 1 N N N -60.785 24.131 -48.924 1.940 -0.803 3.285 TWA 2 O36 polymer 1 1 32 ? ? ? PRD_900071 O38 O19 O 0 1 N N N -55.497 23.585 -51.781 4.315 1.696 0.225 TWA 2 O3 polymer 1 1 33 ? ? ? PRD_900071 O40 O20 O 0 1 N N N -53.097 24.431 -50.803 4.963 3.726 1.232 TWA 2 O40 polymer 1 1 34 ? ? ? PRD_900071 O41 O21 O 0 1 N N N -53.835 21.840 -50.561 4.464 1.679 2.577 TWA 2 O41 polymer 1 1 35 ? ? ? PRD_900071 O42 O22 O 0 1 N N N -55.038 23.757 -49.055 6.472 1.919 1.366 TWA 2 O42 polymer 1 1 36 ? ? ? PRD_900071 O44 O23 O 0 1 N N N -56.297 20.997 -52.847 5.527 -0.084 -1.566 TWA 2 O4 polymer 1 1 37 ? ? ? PRD_900071 O46 O24 O 0 1 N N N -57.072 20.107 -50.361 6.201 -2.334 -2.264 TWA 2 O46 polymer 1 1 38 ? ? ? PRD_900071 O47 O25 O 0 1 N N N -54.651 19.368 -51.337 7.800 -0.670 -1.788 TWA 2 O47 polymer 1 1 39 ? ? ? PRD_900071 O48 O26 O 0 1 N N N -56.910 18.316 -52.363 6.345 -1.656 -0.011 TWA 2 O48 polymer 1 1 40 ? ? ? PRD_900071 S33 S3 S 0 1 N N N -59.388 23.393 -49.463 1.599 -1.716 2.251 TWA 2 S33 polymer 1 1 41 ? ? ? PRD_900071 S39 S4 S 0 1 N N N -54.380 23.409 -50.543 5.004 2.319 1.429 TWA 2 S39 polymer 1 1 42 ? ? ? PRD_900071 S45 S5 S 0 1 N N N -56.234 19.691 -51.734 6.555 -1.183 -1.335 TWA 2 S45 polymer 1 1 43 ? ? ? PRD_900071 H5 H5 H 0 1 N N N -58.894 27.016 -51.101 -0.616 0.442 -1.498 TWD 1 H61 polymer 1 1 44 ? ? ? PRD_900071 H6 H6 H 0 1 N N N -57.146 26.839 -51.473 -0.590 1.929 -0.520 TWD 1 H62 polymer 1 1 45 ? ? ? PRD_900071 H7 H7 H 0 1 N N N -58.631 28.646 -53.299 -2.107 0.806 1.138 TWD 1 H5 polymer 1 1 46 ? ? ? PRD_900071 H8 H8 H 0 1 N N N -55.018 29.548 -51.514 -3.544 -2.470 0.509 TWD 1 H1 polymer 1 1 47 ? ? ? PRD_900071 H9 H9 H 0 1 N N N -56.586 29.299 -49.820 -4.607 -1.094 -1.239 TWD 1 HO6 polymer 1 1 48 ? ? ? PRD_900071 H10 H10 H 0 1 N N N -58.180 31.534 -51.127 -4.621 1.101 0.885 TWD 1 H3 polymer 1 1 49 ? ? ? PRD_900071 H11 H11 H 0 1 N N N -59.183 28.795 -50.574 -3.092 0.887 -1.751 TWD 1 H4 polymer 1 1 50 ? ? ? PRD_900071 H16 H16 H 0 1 N N N -55.335 31.768 -51.793 -2.869 -1.350 2.508 TWD 1 HO1 polymer 1 1 51 ? ? ? PRD_900071 H17 H17 H 0 1 N N N -60.475 30.577 -51.312 -2.165 2.929 -0.920 TWD 1 HO4 polymer 1 1 52 ? ? ? PRD_900071 H18 H18 H 0 1 N N N -54.205 30.943 -46.825 -6.045 -4.435 -0.202 TWD 1 H18 polymer 1 1 53 ? ? ? PRD_900071 H19 H19 H 0 1 N N N -59.895 32.115 -46.545 -5.308 4.613 -0.330 TWD 1 H19 polymer 1 1 54 ? ? ? PRD_900071 H1 H1 H 0 1 N N N -59.494 21.309 -53.770 4.267 -0.421 -3.713 TWA 2 H6C1 polymer 1 1 55 ? ? ? PRD_900071 H2 H2 H 0 1 N N N -58.148 20.717 -54.802 3.019 -1.584 -3.203 TWA 2 H6C2 polymer 1 1 56 ? ? ? PRD_900071 H3 H3 H 0 1 N N N -56.998 22.804 -54.624 3.301 1.247 -2.099 TWA 2 H5 polymer 1 1 57 ? ? ? PRD_900071 H4 H4 H 0 1 N N N -56.914 24.921 -53.274 1.785 1.647 -0.244 TWA 2 H1 polymer 1 1 58 ? ? ? PRD_900071 H12 H12 H 0 1 N N N -57.426 25.024 -50.808 2.549 0.551 1.829 TWA 2 H2 polymer 1 1 59 ? ? ? PRD_900071 H13 H13 H 0 1 N N N -56.900 22.585 -50.614 4.822 -0.138 1.033 TWA 2 H3 polymer 1 1 60 ? ? ? PRD_900071 H14 H14 H 0 1 N N N -58.135 21.580 -52.159 4.116 -1.452 -0.927 TWA 2 H4 polymer 1 1 61 ? ? ? PRD_900071 H15 H15 H 0 1 N N N -59.951 21.490 -56.032 2.336 -0.328 -5.116 TWA 2 H6 polymer 1 1 62 ? ? ? PRD_900071 H20 H20 H 0 1 N N N -57.708 23.139 -48.077 -0.486 -1.589 2.548 TWA 2 H20 polymer 1 1 63 ? ? ? PRD_900071 H21 H21 H 0 1 N N N -54.552 24.467 -48.652 7.006 2.266 2.093 TWA 2 H21 polymer 1 1 64 ? ? ? PRD_900071 H22 H22 H 0 1 N N N -57.768 19.478 -50.211 6.797 -3.092 -2.197 TWA 2 H22 polymer 1 1 65 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_900071 O02 C03 SING N N 1 PRD_900071 C03 C04 SING N N 2 PRD_900071 C04 O05 SING N N 3 PRD_900071 C04 C43 SING N N 4 PRD_900071 O05 C06 SING N N 5 PRD_900071 O07 C06 SING N N 6 PRD_900071 O07 C08 SING N N 7 PRD_900071 C06 C31 SING N N 8 PRD_900071 O44 C43 SING N N 9 PRD_900071 O44 S45 SING N N 10 PRD_900071 O10 C09 SING N N 11 PRD_900071 O10 C11 SING N N 12 PRD_900071 C43 C37 SING N N 13 PRD_900071 O12 C11 SING N N 14 PRD_900071 O48 S45 DOUB N N 15 PRD_900071 C09 C08 SING N N 16 PRD_900071 C09 C25 SING N N 17 PRD_900071 O26 C25 SING N N 18 PRD_900071 O38 C37 SING N N 19 PRD_900071 O38 S39 SING N N 20 PRD_900071 C11 C13 SING N N 21 PRD_900071 S45 O47 DOUB N N 22 PRD_900071 S45 O46 SING N N 23 PRD_900071 C37 C31 SING N N 24 PRD_900071 C31 O32 SING N N 25 PRD_900071 C25 C19 SING N N 26 PRD_900071 O32 S33 SING N N 27 PRD_900071 O40 S39 DOUB N N 28 PRD_900071 C19 C13 SING N N 29 PRD_900071 C19 O20 SING N N 30 PRD_900071 O41 S39 DOUB N N 31 PRD_900071 S39 O42 SING N N 32 PRD_900071 C13 O14 SING N N 33 PRD_900071 O18 S15 DOUB N N 34 PRD_900071 O14 S15 SING N N 35 PRD_900071 O24 S21 DOUB N N 36 PRD_900071 S33 O35 DOUB N N 37 PRD_900071 S33 O36 DOUB N N 38 PRD_900071 S33 O34 SING N N 39 PRD_900071 O20 S21 SING N N 40 PRD_900071 S15 O17 DOUB N N 41 PRD_900071 S15 O16 SING N N 42 PRD_900071 S21 O22 DOUB N N 43 PRD_900071 S21 O23 SING N N 44 PRD_900071 C03 H1 SING N N 45 PRD_900071 C03 H2 SING N N 46 PRD_900071 C04 H3 SING N N 47 PRD_900071 C06 H4 SING N N 48 PRD_900071 C08 H5 SING N N 49 PRD_900071 C08 H6 SING N N 50 PRD_900071 C09 H7 SING N N 51 PRD_900071 C11 H8 SING N N 52 PRD_900071 C13 H9 SING N N 53 PRD_900071 C19 H10 SING N N 54 PRD_900071 C25 H11 SING N N 55 PRD_900071 C31 H12 SING N N 56 PRD_900071 C37 H13 SING N N 57 PRD_900071 C43 H14 SING N N 58 PRD_900071 O02 H15 SING N N 59 PRD_900071 O12 H16 SING N N 60 PRD_900071 O26 H17 SING N N 61 PRD_900071 O16 H18 SING N N 62 PRD_900071 O23 H19 SING N N 63 PRD_900071 O34 H20 SING N N 64 PRD_900071 O42 H21 SING N N 65 PRD_900071 O46 H22 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_900071 SMILES ACDLabs 12.01 "C(C1OC(C(OS(O)(=O)=O)C(C1OS(O)(=O)=O)OS(=O)(=O)O)OCC2C(C(C(C(O2)O)OS(O)(=O)=O)OS(=O)(O)=O)O)O" PRD_900071 InChI InChI 1.03 ;InChI=1S/C12H22O26S5/c13-1-3-6(34-39(16,17)18)8(36-41(22,23)24)10(38-43(28,29)30)12(33-3)31-2-4-5(14)7(35-40(19,20)21)9 (11(15)32-4)37-42(25,26)27/h3-15H,1-2H2,(H,16,17,18)(H,19,20,21)(H,22,23,24)(H,25,26,27)(H,28,29,30)/t3-,4+,5+,6-,7-,8-, 9+,10+,11-,12-/m1/s1 ; PRD_900071 InChIKey InChI 1.03 SNMGREPYXWHBJB-FDEZJODUSA-N PRD_900071 SMILES_CANONICAL CACTVS 3.385 ;OC[C@H]1O[C@@H](OC[C@@H]2O[C@@H](O)[C@@H](O[S](O)(=O)=O)[C@H](O[S](O)(=O)=O)[C@H]2O)[C@@H](O[S](O)(=O)=O)[C@H](O[S](O)( =O)=O)[C@@H]1O[S](O)(=O)=O ; PRD_900071 SMILES CACTVS 3.385 ;OC[CH]1O[CH](OC[CH]2O[CH](O)[CH](O[S](O)(=O)=O)[CH](O[S](O)(=O)=O)[CH]2O)[CH](O[S](O)(=O)=O)[CH](O[S](O)(=O)=O)[CH]1O[S ](O)(=O)=O ; PRD_900071 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 ;C([C@@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@H]2[C@@H]([C@H]([C@@H]([C@@H](O2)O)OS(=O)(=O)O)OS(=O)(=O)O)O)OS(=O)(=O)O)OS( =O)(=O)O)OS(=O)(=O)O)O ; PRD_900071 SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)OCC2C(C(C(C(O2)O)OS(=O)(=O)O)OS(=O)(=O)O)O)OS(=O)(=O)O)OS(=O)(=O)O)OS(=O)(=O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_900071 "SYSTEMATIC NAME" ACDLabs 12.01 "2,3-di-O-sulfo-6-O-(2,3,4-tri-O-sulfo-beta-D-altropyranosyl)-alpha-L-glucopyranose" PRD_900071 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 ;[(2~{R},3~{S},4~{R},5~{R},6~{R})-2-[[(2~{S},3~{S},4~{R},5~{S},6~{R})-3,6-bis(oxidanyl)-4,5-disulfooxy-oxan-2-yl]methoxy ]-6-(hydroxymethyl)-3,5-disulfooxy-oxan-4-yl] hydrogen sulfate ; #