data_PRDCC_900102 # _chem_comp.id PRD_900102 _chem_comp.name "methyl 3-S-alpha-D-mannopyranosyl-3-thio-alpha-D-mannopyranoside" _chem_comp.type saccharide _chem_comp.formula "C13 H24 O10 S" _chem_comp.pdbx_release_status REF_ONLY _chem_comp.formula_weight 372.389 _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_900102 O41 O41 O 0 1 N N N 28.588 63.746 11.249 2.440 2.444 -0.904 O4 Z4R 1 1 1 polymer 1 ? ? ? PRD_900102 C41 C41 C 0 1 N N R 28.201 65.038 11.779 2.402 1.376 0.045 C4 Z4R 2 1 1 polymer 1 ? ? ? PRD_900102 C51 C51 C 0 1 N N R 26.709 64.921 12.171 3.593 0.442 -0.189 C5 Z4R 3 1 1 polymer 1 ? ? ? PRD_900102 C61 C61 C 0 1 N N N 26.410 63.916 13.308 4.896 1.211 0.040 C6 Z4R 4 1 1 polymer 1 ? ? ? PRD_900102 O61 O61 O 0 1 N N N 25.287 63.085 12.957 6.006 0.374 -0.291 O6 Z4R 5 1 1 polymer 1 ? ? ? PRD_900102 O01 O01 O 0 1 N N N 26.226 66.238 12.570 3.521 -0.656 0.722 O5 Z4R 6 1 1 polymer 1 ? ? ? PRD_900102 C11 C11 C 0 1 N N S 26.251 67.239 11.508 2.348 -1.460 0.576 C1 Z4R 7 1 1 polymer 1 ? ? ? PRD_900102 O11 O11 O 0 1 N N N 25.599 66.786 10.318 2.292 -1.983 -0.752 O1 Z4R 8 1 1 polymer 1 ? ? ? PRD_900102 C71 C71 C 0 1 N N N 24.369 67.512 10.063 3.283 -2.975 -1.029 C1M Z4R 9 1 1 polymer 1 ? ? ? PRD_900102 C21 C21 C 0 1 N N R 27.690 67.492 11.036 1.108 -0.603 0.840 C2 Z4R 10 1 1 polymer 1 ? ? ? PRD_900102 O21 O21 O 0 1 N N N 28.414 68.254 12.009 1.137 -0.122 2.186 O2 Z4R 11 1 1 polymer 1 ? ? ? PRD_900102 C31 C31 C 0 1 N N S 28.438 66.174 10.729 1.102 0.585 -0.127 C3 Z4R 12 1 1 polymer 1 ? ? ? PRD_900102 S12 S12 S 0 1 N N N 30.213 66.584 10.489 -0.314 1.658 0.238 S3 Z4R 13 1 1 polymer 1 ? ? ? PRD_900102 C12 C12 C 0 1 N N R 30.744 65.286 9.344 -1.737 0.607 -0.163 C1 MAN 14 2 1 polymer 1 ? ? ? PRD_900102 C22 C22 C 0 1 N N S 32.240 65.389 8.980 -3.016 1.450 -0.143 C2 MAN 15 2 1 polymer 1 ? ? ? PRD_900102 C32 C32 C 0 1 N N S 32.519 66.439 7.884 -4.219 0.544 -0.424 C3 MAN 16 2 1 polymer 1 ? ? ? PRD_900102 C42 C42 C 0 1 N N S 31.503 66.444 6.733 -4.249 -0.582 0.614 C4 MAN 17 2 1 polymer 1 ? ? ? PRD_900102 C52 C52 C 0 1 N N R 30.093 66.490 7.326 -2.923 -1.346 0.566 C5 MAN 18 2 1 polymer 1 ? ? ? PRD_900102 C62 C62 C 0 1 N N N 29.001 66.447 6.266 -2.755 -1.989 -0.812 C6 MAN 19 2 1 polymer 1 ? ? ? PRD_900102 O22 O22 O 0 1 N N N 32.719 64.086 8.573 -2.936 2.462 -1.148 O2 MAN 20 2 1 polymer 1 ? ? ? PRD_900102 O32 O32 O 0 1 N N N 33.795 66.069 7.305 -4.101 -0.016 -1.733 O3 MAN 21 2 1 polymer 1 ? ? ? PRD_900102 O42 O42 O 0 1 N N N 31.700 67.609 5.923 -4.432 -0.026 1.918 O4 MAN 22 2 1 polymer 1 ? ? ? PRD_900102 O02 O02 O 0 1 N N N 29.947 65.299 8.134 -1.844 -0.440 0.804 O5 MAN 23 2 1 polymer 1 ? ? ? PRD_900102 O62 O62 O 0 1 N N N 27.724 66.620 6.955 -1.596 -2.825 -0.810 O6 MAN 24 2 1 polymer 1 ? ? ? PRD_900102 HO41 HO41 H 0 0 N N N 28.673 63.803 10.305 3.240 2.985 -0.855 HO4 Z4R 25 1 1 polymer 1 ? ? ? PRD_900102 H41 H41 H 0 1 N N N 28.811 65.308 12.654 2.451 1.783 1.054 H4 Z4R 26 1 1 polymer 1 ? ? ? PRD_900102 H51 H51 H 0 1 N N N 26.191 64.534 11.281 3.566 0.068 -1.212 H5 Z4R 27 1 1 polymer 1 ? ? ? PRD_900102 H61 H61 H 0 1 N N N 27.293 63.281 13.471 4.910 2.099 -0.592 H61 Z4R 28 1 1 polymer 1 ? ? ? PRD_900102 H61A H61A H 0 0 N N N 26.171 64.473 14.226 4.964 1.508 1.086 H62 Z4R 29 1 1 polymer 1 ? ? ? PRD_900102 HO61 HO61 H 0 0 N N N 24.773 62.902 13.734 6.867 0.797 -0.169 HO6 Z4R 30 1 1 polymer 1 ? ? ? PRD_900102 H11 H11 H 0 1 N N N 25.761 68.123 11.942 2.380 -2.283 1.290 H1 Z4R 31 1 1 polymer 1 ? ? ? PRD_900102 H71 H71 H 0 1 N N N 23.847 67.696 11.014 3.173 -3.321 -2.057 H51 Z4R 32 1 1 polymer 1 ? ? ? PRD_900102 H71A H71A H 0 0 N N N 24.604 68.473 9.582 4.275 -2.544 -0.895 H52 Z4R 33 1 1 polymer 1 ? ? ? PRD_900102 H71B H71B H 0 0 N N N 23.723 66.918 9.400 3.156 -3.815 -0.347 H53 Z4R 34 1 1 polymer 1 ? ? ? PRD_900102 H21 H21 H 0 1 N N N 27.628 68.068 10.101 0.211 -1.203 0.687 H2 Z4R 35 1 1 polymer 1 ? ? ? PRD_900102 HO21 HO21 H 0 0 N N N 28.574 67.718 12.777 1.147 -0.822 2.853 HO2 Z4R 36 1 1 polymer 1 ? ? ? PRD_900102 H31 H31 H 0 1 N N N 28.025 65.738 9.807 1.029 0.220 -1.152 H3 Z4R 37 1 1 polymer 1 ? ? ? PRD_900102 H12 H12 H 0 1 N N N 30.592 64.333 9.871 -1.602 0.175 -1.154 H1 MAN 38 2 1 polymer 1 ? ? ? PRD_900102 H22 H22 H 0 1 N N N 32.782 65.729 9.875 -3.130 1.915 0.836 H2 MAN 39 2 1 polymer 1 ? ? ? PRD_900102 H32 H32 H 0 1 N N N 32.479 67.434 8.352 -5.138 1.126 -0.357 H3 MAN 40 2 1 polymer 1 ? ? ? PRD_900102 H42 H42 H 0 1 N N N 31.634 65.541 6.118 -5.070 -1.263 0.390 H4 MAN 41 2 1 polymer 1 ? ? ? PRD_900102 H52 H52 H 0 1 N N N 29.983 67.430 7.886 -2.922 -2.122 1.331 H5 MAN 42 2 1 polymer 1 ? ? ? PRD_900102 H62A H62A H 0 0 N N N 29.024 65.491 5.722 -2.639 -1.209 -1.565 H61 MAN 43 2 1 polymer 1 ? ? ? PRD_900102 H62 H62 H 0 1 N N N 29.150 67.253 5.533 -3.635 -2.589 -1.043 H62 MAN 44 2 1 polymer 1 ? ? ? PRD_900102 HO22 HO22 H 0 0 N N N 32.824 64.067 7.629 -2.192 3.070 -1.036 HO2 MAN 45 2 1 polymer 1 ? ? ? PRD_900102 HO32 HO32 H 0 0 N N N 33.704 65.988 6.363 -4.076 0.642 -2.441 HO3 MAN 46 2 1 polymer 1 ? ? ? PRD_900102 HO42 HO42 H 0 0 N N N 31.744 68.378 6.479 -5.254 0.473 2.020 HO4 MAN 47 2 1 polymer 1 ? ? ? PRD_900102 HO62 HO62 H 0 0 N N N 27.872 66.658 7.893 -1.427 -3.266 -1.654 HO6 MAN 48 2 1 polymer 1 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_900102 O41 C41 SING N N 1 PRD_900102 C41 C51 SING N N 2 PRD_900102 C41 C31 SING N N 3 PRD_900102 C51 C61 SING N N 4 PRD_900102 C51 O01 SING N N 5 PRD_900102 C61 O61 SING N N 6 PRD_900102 O01 C11 SING N N 7 PRD_900102 C11 O11 SING N N 8 PRD_900102 C11 C21 SING N N 9 PRD_900102 O11 C71 SING N N 10 PRD_900102 C21 O21 SING N N 11 PRD_900102 C21 C31 SING N N 12 PRD_900102 C31 S12 SING N N 13 PRD_900102 S12 C12 SING N N 14 PRD_900102 C12 O02 SING N N 15 PRD_900102 C12 C22 SING N N 16 PRD_900102 O02 C52 SING N N 17 PRD_900102 C52 C62 SING N N 18 PRD_900102 C52 C42 SING N N 19 PRD_900102 C62 O62 SING N N 20 PRD_900102 C42 O42 SING N N 21 PRD_900102 C42 C32 SING N N 22 PRD_900102 C32 O32 SING N N 23 PRD_900102 C32 C22 SING N N 24 PRD_900102 C22 O22 SING N N 25 PRD_900102 O41 HO41 SING N N 26 PRD_900102 C41 H41 SING N N 27 PRD_900102 C51 H51 SING N N 28 PRD_900102 C61 H61 SING N N 29 PRD_900102 C61 H61A SING N N 30 PRD_900102 O61 HO61 SING N N 31 PRD_900102 C11 H11 SING N N 32 PRD_900102 C71 H71 SING N N 33 PRD_900102 C71 H71A SING N N 34 PRD_900102 C71 H71B SING N N 35 PRD_900102 C21 H21 SING N N 36 PRD_900102 O21 HO21 SING N N 37 PRD_900102 C31 H31 SING N N 38 PRD_900102 C12 H12 SING N N 39 PRD_900102 C52 H52 SING N N 40 PRD_900102 C62 H62 SING N N 41 PRD_900102 C62 H62A SING N N 42 PRD_900102 O62 HO62 SING N N 43 PRD_900102 C42 H42 SING N N 44 PRD_900102 O42 HO42 SING N N 45 PRD_900102 C32 H32 SING N N 46 PRD_900102 O32 HO32 SING N N 47 PRD_900102 C22 H22 SING N N 48 PRD_900102 O22 HO22 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_900102 SMILES ACDLabs 10.04 "S(C1C(O)C(OC)OC(CO)C1O)C2OC(C(O)C(O)C2O)CO" PRD_900102 SMILES_CANONICAL CACTVS 3.341 "CO[C@H]1O[C@H](CO)[C@@H](O)[C@H](S[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]2O)[C@@H]1O" PRD_900102 SMILES CACTVS 3.341 "CO[CH]1O[CH](CO)[CH](O)[CH](S[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH]1O" PRD_900102 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CO[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)S[C@@H]2[C@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O" PRD_900102 SMILES "OpenEye OEToolkits" 1.5.0 "COC1C(C(C(C(O1)CO)O)SC2C(C(C(C(O2)CO)O)O)O)O" PRD_900102 InChI InChI 1.03 ;InChI=1S/C13H24O10S/c1-21-12-10(20)11(7(17)5(3-15)22-12)24-13-9(19)8(18)6(16)4(2-14)23-13/h4-20H,2-3H2,1H3/t4-,5-,6-,7- ,8+,9+,10+,11+,12+,13-/m1/s1 ; PRD_900102 InChIKey InChI 1.03 SCFDSIKLIGFXRA-ZEEOCKJESA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PRD_900102 "SYSTEMATIC NAME" ACDLabs 10.04 "methyl 3-S-alpha-D-mannopyranosyl-3-thio-alpha-D-mannopyranoside" PRD_900102 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 ;(2R,3S,4S,5S,6R)-2-[(2R,3R,4S,5R,6S)-3,5-dihydroxy-2-(hydroxymethyl)-6-methoxy-oxan-4-yl]sulfanyl-6-(hydroxymethyl)oxan e-3,4,5-triol ; #