data_PRDCC_900129 # _chem_comp.id PRD_900129 _chem_comp.name "Lewis A antigen, beta anomer" _chem_comp.type saccharide _chem_comp.formula "C20 H35 N O15" _chem_comp.pdbx_release_status REF_ONLY _chem_comp.formula_weight 529.490 _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_900129 C1 C1 C 0 1 N N R 46.498 8.745 22.719 2.201 3.084 -0.469 NAG 1 C1 polymer 1 1 1 ? ? ? PRD_900129 C2 C2 C 0 1 N N R 45.454 9.652 23.455 2.115 1.762 0.299 NAG 1 C2 polymer 1 1 2 ? ? ? PRD_900129 C3 C3 C 0 1 N N R 44.876 10.631 22.400 0.840 1.021 -0.114 NAG 1 C3 polymer 1 1 3 ? ? ? PRD_900129 C4 C4 C 0 1 N N S 45.997 11.287 21.581 -0.369 1.924 0.147 NAG 1 C4 polymer 1 1 4 ? ? ? PRD_900129 C5 C5 C 0 1 N N R 47.031 10.295 21.048 -0.188 3.239 -0.616 NAG 1 C5 polymer 1 1 5 ? ? ? PRD_900129 C6 C6 C 0 1 N N N 48.230 10.987 20.455 -1.364 4.171 -0.313 NAG 1 C6 polymer 1 1 6 ? ? ? PRD_900129 C7 C7 C 0 1 N N N 43.458 8.034 23.423 4.434 1.110 0.668 NAG 1 C7 polymer 1 1 7 ? ? ? PRD_900129 C8 C8 C 0 1 N N N 42.519 7.236 24.337 5.637 0.262 0.345 NAG 1 C8 polymer 1 1 8 ? ? ? PRD_900129 N1 N1 N 0 1 N N N 44.399 8.811 24.050 3.285 0.938 -0.014 NAG 1 N2 polymer 1 1 9 ? ? ? PRD_900129 O1 O1 O 0 1 N Y N 47.117 7.670 23.443 3.359 3.807 -0.047 NAG 1 O1 polymer 1 1 10 ? ? ? PRD_900129 O2 O2 O 0 1 N N N 44.087 11.704 22.910 0.715 -0.178 0.652 NAG 1 O3 polymer 1 1 11 ? ? ? PRD_900129 O3 O3 O 0 1 N N N 45.470 12.048 20.514 -1.558 1.271 -0.303 NAG 1 O4 polymer 1 1 12 ? ? ? PRD_900129 O4 O4 O 0 1 N N N 47.522 9.558 22.142 1.031 3.862 -0.207 NAG 1 O5 polymer 1 1 13 ? ? ? PRD_900129 O5 O5 O 0 1 N N N 48.663 10.009 19.555 -1.267 5.340 -1.129 NAG 1 O6 polymer 1 1 14 ? ? ? PRD_900129 O6 O6 O 0 1 N N N 43.296 7.970 22.181 4.501 1.949 1.541 NAG 1 O7 polymer 1 1 15 ? ? ? PRD_900129 C9 C9 C 0 1 N N R 42.506 11.504 22.793 1.337 -1.317 0.054 GAL 2 C1 polymer 1 1 16 ? ? ? PRD_900129 C10 C10 C 0 1 N N R 41.871 12.394 23.868 1.250 -2.509 1.012 GAL 2 C2 polymer 1 1 17 ? ? ? PRD_900129 C11 C11 C 0 1 N N S 40.376 12.350 23.653 1.865 -3.740 0.340 GAL 2 C3 polymer 1 1 18 ? ? ? PRD_900129 C12 C12 C 0 1 N N R 40.066 12.745 22.194 1.138 -4.003 -0.983 GAL 2 C4 polymer 1 1 19 ? ? ? PRD_900129 C13 C13 C 0 1 N N R 40.874 11.900 21.199 1.230 -2.754 -1.863 GAL 2 C5 polymer 1 1 20 ? ? ? PRD_900129 C14 C14 C 0 1 N N N 40.658 12.275 19.731 0.455 -2.988 -3.162 GAL 2 C6 polymer 1 1 21 ? ? ? PRD_900129 O7 O7 O 0 1 N N N 42.234 11.702 25.053 1.968 -2.211 2.211 GAL 2 O2 polymer 1 1 22 ? ? ? PRD_900129 O8 O8 O 0 1 N N N 39.741 13.249 24.530 1.722 -4.874 1.198 GAL 2 O3 polymer 1 1 23 ? ? ? PRD_900129 O9 O9 O 0 1 N N N 40.360 14.091 22.068 -0.234 -4.304 -0.722 GAL 2 O4 polymer 1 1 24 ? ? ? PRD_900129 O10 O10 O 0 1 N N N 42.252 11.913 21.482 0.669 -1.640 -1.167 GAL 2 O5 polymer 1 1 25 ? ? ? PRD_900129 O11 O11 O 0 1 N N N 41.052 11.160 18.910 0.637 -1.869 -4.032 GAL 2 O6 polymer 1 1 26 ? ? ? PRD_900129 C15 C15 C 0 1 N N R 45.156 13.617 20.569 -2.687 1.467 0.552 FUC 3 C1 polymer 1 1 27 ? ? ? PRD_900129 C16 C16 C 0 1 N N S 46.341 14.487 20.273 -3.946 0.929 -0.134 FUC 3 C2 polymer 1 1 28 ? ? ? PRD_900129 C17 C17 C 0 1 N N R 46.874 14.149 18.838 -3.790 -0.578 -0.361 FUC 3 C3 polymer 1 1 29 ? ? ? PRD_900129 C18 C18 C 0 1 N N S 45.792 14.518 17.838 -3.524 -1.261 0.984 FUC 3 C4 polymer 1 1 30 ? ? ? PRD_900129 C19 C19 C 0 1 N N S 44.531 13.681 18.176 -2.282 -0.639 1.626 FUC 3 C5 polymer 1 1 31 ? ? ? PRD_900129 C20 C20 C 0 1 N N N 43.309 14.016 17.360 -2.044 -1.274 2.998 FUC 3 C6 polymer 1 1 32 ? ? ? PRD_900129 O12 O12 O 0 1 N N N 47.331 14.299 21.277 -4.122 1.586 -1.391 FUC 3 O2 polymer 1 1 33 ? ? ? PRD_900129 O13 O13 O 0 1 N N N 48.069 14.891 18.614 -4.990 -1.101 -0.935 FUC 3 O3 polymer 1 1 34 ? ? ? PRD_900129 O14 O14 O 0 1 N N N 45.553 15.964 17.859 -4.650 -1.076 1.844 FUC 3 O4 polymer 1 1 35 ? ? ? PRD_900129 O15 O15 O 0 1 N N N 44.129 13.758 19.579 -2.481 0.768 1.781 FUC 3 O5 polymer 1 1 36 ? ? ? PRD_900129 H1 H1 H 0 1 N N N 45.947 8.288 21.884 2.269 2.879 -1.538 NAG 1 H1 polymer 1 1 37 ? ? ? PRD_900129 H2 H2 H 0 1 N N N 45.969 10.227 24.238 2.088 1.965 1.370 NAG 1 H2 polymer 1 1 38 ? ? ? PRD_900129 H3 H3 H 0 1 N N N 44.263 10.038 21.705 0.890 0.775 -1.175 NAG 1 H3 polymer 1 1 39 ? ? ? PRD_900129 H4 H4 H 0 1 N N N 46.530 11.968 22.261 -0.447 2.130 1.214 NAG 1 H4 polymer 1 1 40 ? ? ? PRD_900129 H5 H5 H 0 1 N N N 46.565 9.640 20.297 -0.152 3.037 -1.686 NAG 1 H5 polymer 1 1 41 ? ? ? PRD_900129 H6 H6 H 0 1 N N N 47.949 11.918 19.941 -2.300 3.655 -0.526 NAG 1 H61 polymer 1 1 42 ? ? ? PRD_900129 H7 H7 H 0 1 N N N 48.993 11.205 21.217 -1.338 4.458 0.738 NAG 1 H62 polymer 1 1 43 ? ? ? PRD_900129 H8 H8 H 0 1 N N N 41.790 6.686 23.724 5.923 0.417 -0.695 NAG 1 H81 polymer 1 1 44 ? ? ? PRD_900129 H9 H9 H 0 1 N N N 43.107 6.524 24.934 6.465 0.544 0.995 NAG 1 H82 polymer 1 1 45 ? ? ? PRD_900129 H10 H10 H 0 1 N N N 41.987 7.926 25.008 5.393 -0.789 0.502 NAG 1 H83 polymer 1 1 46 ? ? ? PRD_900129 H11 H11 H 0 1 N N N 44.365 8.806 25.049 3.232 0.267 -0.713 NAG 1 HN2 polymer 1 1 47 ? ? ? PRD_900129 H12 H12 H 0 1 N Y N 47.722 7.211 22.873 3.476 4.656 -0.494 NAG 1 HO1 polymer 1 1 48 ? ? ? PRD_900129 H13 H13 H 0 1 N Y N 49.435 10.319 19.097 -1.982 5.977 -0.989 NAG 1 HO6 polymer 1 1 49 ? ? ? PRD_900129 H14 H14 H 0 1 N N N 42.252 10.448 22.965 2.384 -1.093 -0.153 GAL 2 H1 polymer 1 1 50 ? ? ? PRD_900129 H15 H15 H 0 1 N N N 42.262 13.421 23.825 0.206 -2.708 1.251 GAL 2 H2 polymer 1 1 51 ? ? ? PRD_900129 H16 H16 H 0 1 N N N 40.018 11.324 23.824 2.922 -3.559 0.145 GAL 2 H3 polymer 1 1 52 ? ? ? PRD_900129 H17 H17 H 0 1 N N N 38.996 12.567 22.010 1.606 -4.845 -1.494 GAL 2 H4 polymer 1 1 53 ? ? ? PRD_900129 H18 H18 H 0 1 N N N 40.517 10.866 21.310 2.275 -2.549 -2.095 GAL 2 H5 polymer 1 1 54 ? ? ? PRD_900129 H19 H19 H 0 1 N N N 39.596 12.505 19.559 0.825 -3.891 -3.648 GAL 2 H61 polymer 1 1 55 ? ? ? PRD_900129 H20 H20 H 0 1 N N N 41.269 13.155 19.479 -0.605 -3.105 -2.936 GAL 2 H62 polymer 1 1 56 ? ? ? PRD_900129 H21 H21 H 0 1 N Y N 41.891 12.165 25.808 1.634 -1.437 2.687 GAL 2 HO2 polymer 1 1 57 ? ? ? PRD_900129 H22 H22 H 0 1 N Y N 38.802 13.218 24.391 2.153 -4.774 2.058 GAL 2 HO3 polymer 1 1 58 ? ? ? PRD_900129 H23 H23 H 0 1 N Y N 40.181 14.373 21.179 -0.367 -5.083 -0.164 GAL 2 HO4 polymer 1 1 59 ? ? ? PRD_900129 H24 H24 H 0 1 N Y N 40.923 11.379 17.995 0.172 -1.949 -4.877 GAL 2 HO6 polymer 1 1 60 ? ? ? PRD_900129 H25 H25 H 0 1 N N N 44.764 13.856 21.569 -2.810 2.531 0.754 FUC 3 H1 polymer 1 1 61 ? ? ? PRD_900129 H26 H26 H 0 1 N N N 46.013 15.537 20.270 -4.813 1.114 0.499 FUC 3 H2 polymer 1 1 62 ? ? ? PRD_900129 H27 H27 H 0 1 N N N 47.071 13.068 18.780 -2.953 -0.760 -1.035 FUC 3 H3 polymer 1 1 63 ? ? ? PRD_900129 H28 H28 H 0 1 N N N 46.134 14.226 16.834 -3.357 -2.326 0.824 FUC 3 H4 polymer 1 1 64 ? ? ? PRD_900129 H29 H29 H 0 1 N N N 44.784 12.633 17.960 -1.415 -0.815 0.989 FUC 3 H5 polymer 1 1 65 ? ? ? PRD_900129 H30 H30 H 0 1 N N N 42.472 13.373 17.671 -1.893 -2.347 2.879 FUC 3 H61 polymer 1 1 66 ? ? ? PRD_900129 H31 H31 H 0 1 N N N 43.040 15.071 17.519 -1.159 -0.831 3.455 FUC 3 H62 polymer 1 1 67 ? ? ? PRD_900129 H32 H32 H 0 1 N N N 43.523 13.849 16.294 -2.910 -1.097 3.635 FUC 3 H63 polymer 1 1 68 ? ? ? PRD_900129 H33 H33 H 0 1 N Y N 48.082 14.850 21.089 -4.222 2.545 -1.323 FUC 3 HO2 polymer 1 1 69 ? ? ? PRD_900129 H34 H34 H 0 1 N Y N 48.405 14.697 17.747 -5.223 -0.708 -1.786 FUC 3 HO3 polymer 1 1 70 ? ? ? PRD_900129 H35 H35 H 0 1 N Y N 44.875 16.183 17.230 -4.550 -1.484 2.715 FUC 3 HO4 polymer 1 1 71 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_900129 C1 C2 SING N N 1 PRD_900129 C1 O1 SING N N 2 PRD_900129 C1 O4 SING N N 3 PRD_900129 C1 H1 SING N N 4 PRD_900129 C2 C3 SING N N 5 PRD_900129 C2 N1 SING N N 6 PRD_900129 C2 H2 SING N N 7 PRD_900129 C3 C4 SING N N 8 PRD_900129 C3 O2 SING N N 9 PRD_900129 C3 H3 SING N N 10 PRD_900129 C4 C5 SING N N 11 PRD_900129 C4 O3 SING N N 12 PRD_900129 C4 H4 SING N N 13 PRD_900129 C5 C6 SING N N 14 PRD_900129 C5 O4 SING N N 15 PRD_900129 C5 H5 SING N N 16 PRD_900129 C6 O5 SING N N 17 PRD_900129 C6 H6 SING N N 18 PRD_900129 C6 H7 SING N N 19 PRD_900129 C7 C8 SING N N 20 PRD_900129 C7 N1 SING N N 21 PRD_900129 C7 O6 DOUB N N 22 PRD_900129 C8 H8 SING N N 23 PRD_900129 C8 H9 SING N N 24 PRD_900129 C8 H10 SING N N 25 PRD_900129 N1 H11 SING N N 26 PRD_900129 O1 H12 SING N N 27 PRD_900129 O5 H13 SING N N 28 PRD_900129 C9 C10 SING N N 29 PRD_900129 C9 O10 SING N N 30 PRD_900129 C9 H14 SING N N 31 PRD_900129 C10 C11 SING N N 32 PRD_900129 C10 O7 SING N N 33 PRD_900129 C10 H15 SING N N 34 PRD_900129 C11 C12 SING N N 35 PRD_900129 C11 O8 SING N N 36 PRD_900129 C11 H16 SING N N 37 PRD_900129 C12 C13 SING N N 38 PRD_900129 C12 O9 SING N N 39 PRD_900129 C12 H17 SING N N 40 PRD_900129 C13 C14 SING N N 41 PRD_900129 C13 O10 SING N N 42 PRD_900129 C13 H18 SING N N 43 PRD_900129 C14 O11 SING N N 44 PRD_900129 C14 H19 SING N N 45 PRD_900129 C14 H20 SING N N 46 PRD_900129 O7 H21 SING N N 47 PRD_900129 O8 H22 SING N N 48 PRD_900129 O9 H23 SING N N 49 PRD_900129 O11 H24 SING N N 50 PRD_900129 C15 C16 SING N N 51 PRD_900129 C15 O15 SING N N 52 PRD_900129 C15 H25 SING N N 53 PRD_900129 C16 C17 SING N N 54 PRD_900129 C16 O12 SING N N 55 PRD_900129 C16 H26 SING N N 56 PRD_900129 C17 C18 SING N N 57 PRD_900129 C17 O13 SING N N 58 PRD_900129 C17 H27 SING N N 59 PRD_900129 C18 C19 SING N N 60 PRD_900129 C18 O14 SING N N 61 PRD_900129 C18 H28 SING N N 62 PRD_900129 C19 C20 SING N N 63 PRD_900129 C19 O15 SING N N 64 PRD_900129 C19 H29 SING N N 65 PRD_900129 C20 H30 SING N N 66 PRD_900129 C20 H31 SING N N 67 PRD_900129 C20 H32 SING N N 68 PRD_900129 O12 H33 SING N N 69 PRD_900129 O13 H34 SING N N 70 PRD_900129 O14 H35 SING N N 71 PRD_900129 O2 C9 SING N N 72 PRD_900129 O3 C15 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_900129 InChI InChI 1.06 "InChI=1S/C20H35NO15/c1-5-10(25)12(27)14(29)19(32-5)35-16-8(4-23)33-18(31)9(21-6(2)24)17(16)36-20-15(30)13(28)11(26)7(3-22)34-20/h5,7-20,22-23,25-31H,3-4H2,1-2H3,(H,21,24)/t5-,7+,8+,9+,10+,11-,12+,13-,14-,15+,16+,17+,18+,19-,20-/m0/s1" PRD_900129 InChIKey InChI 1.06 CFDVGUXRLQWLJX-LPHOMBEVSA-N PRD_900129 SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1O[C@@H](O[C@@H]2[C@@H](CO)O[C@@H](O)[C@H](NC(C)=O)[C@H]2O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@@H](O)[C@H](O)[C@@H]1O" PRD_900129 SMILES CACTVS 3.385 "C[CH]1O[CH](O[CH]2[CH](CO)O[CH](O)[CH](NC(C)=O)[CH]2O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)[CH](O)[CH](O)[CH]1O" PRD_900129 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O[C@@H]2[C@H](O[C@H]([C@@H]([C@H]2O[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O)NC(=O)C)O)CO)O)O)O" PRD_900129 SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)OC2C(OC(C(C2OC3C(C(C(C(O3)CO)O)O)O)NC(=O)C)O)CO)O)O)O" # _pdbx_chem_comp_identifier.comp_id PRD_900129 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier ;~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-4-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris (oxidanyl)oxan-2-yl]oxy-5-[(3~{S},4~{R},5~{S},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-oxidanyl-oxan-3-yl]eth anamide ; #