data_PRDCC_900130 # _chem_comp.id PRD_900130 _chem_comp.name "Lewis A antigen, alpha anomer" _chem_comp.type saccharide _chem_comp.formula "C20 H35 N O15" _chem_comp.pdbx_release_status REF_ONLY _chem_comp.formula_weight 529.490 _chem_comp.pdbx_type ? _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date ? _chem_comp.pdbx_modified_date ? _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag ? _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag ? _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_ref_id _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag PRD_900130 C1 C1 C 0 1 N N S -7.958 -14.324 50.130 -1.343 3.605 0.233 NDG 1 C1 polymer 1 1 1 ? ? ? PRD_900130 C2 C2 C 0 1 N N R -8.397 -14.456 48.674 -1.596 2.275 -0.482 NDG 1 C2 polymer 1 1 2 ? ? ? PRD_900130 C3 C3 C 0 1 N N R -9.798 -14.080 48.466 -0.567 1.245 -0.006 NDG 1 C3 polymer 1 1 3 ? ? ? PRD_900130 C4 C4 C 0 1 N N S -10.678 -14.703 49.389 0.841 1.788 -0.268 NDG 1 C4 polymer 1 1 4 ? ? ? PRD_900130 C5 C5 C 0 1 N N R -10.204 -14.622 50.838 1.000 3.136 0.438 NDG 1 C5 polymer 1 1 5 ? ? ? PRD_900130 C6 C6 C 0 1 N N N -11.025 -15.437 51.752 2.383 3.713 0.132 NDG 1 C6 polymer 1 1 6 ? ? ? PRD_900130 C7 C7 C 0 1 N N N -6.554 -14.288 46.893 -3.998 2.238 -0.889 NDG 1 C7 polymer 1 1 7 ? ? ? PRD_900130 C8 C8 C 0 1 N N N -5.665 -13.478 46.051 -5.387 1.749 -0.567 NDG 1 C8 polymer 1 1 8 ? ? ? PRD_900130 O1 O1 O 0 1 N N N -8.799 -15.016 50.989 -0.006 4.038 -0.027 NDG 1 O5 polymer 1 1 9 ? ? ? PRD_900130 O2 O2 O 0 1 N N N -10.188 -14.388 47.039 -0.749 0.022 -0.722 NDG 1 O3 polymer 1 1 10 ? ? ? PRD_900130 O3 O3 O 0 1 N N N -12.000 -14.070 49.285 1.810 0.867 0.238 NDG 1 O4 polymer 1 1 11 ? ? ? PRD_900130 O4 O4 O 0 1 N N N -11.183 -16.774 51.409 2.584 4.902 0.900 NDG 1 O6 polymer 1 1 12 ? ? ? PRD_900130 O5 O5 O 0 1 N N N -6.532 -15.509 46.854 -3.827 3.025 -1.795 NDG 1 O7 polymer 1 1 13 ? ? ? PRD_900130 N1 N1 N 0 1 N N N -7.504 -13.621 47.820 -2.946 1.800 -0.169 NDG 1 N2 polymer 1 1 14 ? ? ? PRD_900130 O6 O6 O 0 1 N Y N -7.980 -12.957 50.494 -1.523 3.432 1.640 NDG 1 O1 polymer 1 1 15 ? ? ? PRD_900130 C9 C9 C 0 1 N N R -10.324 -13.240 46.241 -1.658 -0.887 -0.098 GAL 2 C1 polymer 1 1 16 ? ? ? PRD_900130 C10 C10 C 0 1 N N R -10.464 -13.642 44.773 -1.872 -2.100 -1.007 GAL 2 C2 polymer 1 1 17 ? ? ? PRD_900130 C11 C11 C 0 1 N N S -10.917 -12.537 43.904 -2.799 -3.097 -0.305 GAL 2 C3 polymer 1 1 18 ? ? ? PRD_900130 C12 C12 C 0 1 N N R -12.024 -11.768 44.448 -2.189 -3.483 1.046 GAL 2 C4 polymer 1 1 19 ? ? ? PRD_900130 C13 C13 C 0 1 N N R -11.716 -11.330 45.847 -1.963 -2.216 1.875 GAL 2 C5 polymer 1 1 20 ? ? ? PRD_900130 C14 C14 C 0 1 N N N -12.808 -10.544 46.442 -1.298 -2.587 3.202 GAL 2 C6 polymer 1 1 21 ? ? ? PRD_900130 O7 O7 O 0 1 N N N -9.249 -14.153 44.334 -2.466 -1.678 -2.236 GAL 2 O2 polymer 1 1 22 ? ? ? PRD_900130 O8 O8 O 0 1 N N N -11.233 -13.019 42.578 -2.945 -4.265 -1.115 GAL 2 O3 polymer 1 1 23 ? ? ? PRD_900130 O9 O9 O 0 1 N N N -13.225 -12.516 44.433 -0.940 -4.143 0.834 GAL 2 O4 polymer 1 1 24 ? ? ? PRD_900130 O10 O10 O 0 1 N N N -11.434 -12.511 46.698 -1.118 -1.319 1.152 GAL 2 O5 polymer 1 1 25 ? ? ? PRD_900130 O11 O11 O 0 1 N N N -12.594 -9.970 47.726 -1.194 -1.422 4.024 GAL 2 O6 polymer 1 1 26 ? ? ? PRD_900130 C15 C15 C 0 1 N N R -13.035 -15.004 49.399 2.964 0.722 -0.592 FUC 3 C1 polymer 1 1 27 ? ? ? PRD_900130 C16 C16 C 0 1 N N S -14.327 -14.269 49.754 4.025 -0.096 0.148 FUC 3 C2 polymer 1 1 28 ? ? ? PRD_900130 C17 C17 C 0 1 N N R -14.722 -13.378 48.671 3.476 -1.498 0.428 FUC 3 C3 polymer 1 1 29 ? ? ? PRD_900130 C18 C18 C 0 1 N N S -14.913 -14.093 47.465 3.062 -2.146 -0.896 FUC 3 C4 polymer 1 1 30 ? ? ? PRD_900130 C19 C19 C 0 1 N N S -13.720 -14.971 47.076 2.037 -1.249 -1.596 FUC 3 C5 polymer 1 1 31 ? ? ? PRD_900130 C20 C20 C 0 1 N N N -14.126 -15.916 46.046 1.663 -1.860 -2.948 FUC 3 C6 polymer 1 1 32 ? ? ? PRD_900130 O12 O12 O 0 1 N N N -14.180 -13.549 50.942 4.348 0.547 1.383 FUC 3 O2 polymer 1 1 33 ? ? ? PRD_900130 O13 O13 O 0 1 N N N -15.962 -12.743 49.036 4.486 -2.291 1.054 FUC 3 O3 polymer 1 1 34 ? ? ? PRD_900130 O14 O14 O 0 1 N N N -16.045 -14.947 47.684 4.210 -2.301 -1.732 FUC 3 O4 polymer 1 1 35 ? ? ? PRD_900130 O15 O15 O 0 1 N N N -13.156 -15.728 48.208 2.601 0.048 -1.799 FUC 3 O5 polymer 1 1 36 ? ? ? PRD_900130 H1 H1 H 0 1 N N N -6.932 -14.712 50.214 -2.045 4.354 -0.134 NDG 1 H1 polymer 1 1 37 ? ? ? PRD_900130 H2 H2 H 0 1 N N N -8.270 -15.508 48.379 -1.499 2.416 -1.559 NDG 1 H2 polymer 1 1 38 ? ? ? PRD_900130 H3 H3 H 0 1 N N N -9.875 -12.990 48.596 -0.697 1.067 1.061 NDG 1 H3 polymer 1 1 39 ? ? ? PRD_900130 H4 H4 H 0 1 N N N -10.780 -15.767 49.128 0.988 1.919 -1.340 NDG 1 H4 polymer 1 1 40 ? ? ? PRD_900130 H5 H5 H 0 1 N N N -10.295 -13.571 51.151 0.894 2.998 1.514 NDG 1 H5 polymer 1 1 41 ? ? ? PRD_900130 H6 H6 H 0 0 N N N -10.557 -15.399 52.747 3.148 2.981 0.391 NDG 1 H61 polymer 1 1 42 ? ? ? PRD_900130 H7 H7 H 0 0 N N N -12.026 -14.982 51.800 2.451 3.951 -0.929 NDG 1 H62 polymer 1 1 43 ? ? ? PRD_900130 H8 H8 H 0 0 N N N -5.036 -14.140 45.438 -5.598 0.849 -1.145 NDG 1 H81 polymer 1 1 44 ? ? ? PRD_900130 H9 H9 H 0 0 N N N -6.268 -12.834 45.395 -5.454 1.521 0.497 NDG 1 H82 polymer 1 1 45 ? ? ? PRD_900130 H10 H10 H 0 0 N N N -5.024 -12.853 46.690 -6.112 2.522 -0.819 NDG 1 H83 polymer 1 1 46 ? ? ? PRD_900130 H11 H11 H 0 1 N Y N -11.725 -17.206 52.059 3.443 5.323 0.756 NDG 1 HO6 polymer 1 1 47 ? ? ? PRD_900130 H12 H12 H 0 1 N N N -7.544 -12.623 47.871 -3.082 1.170 0.556 NDG 1 HN2 polymer 1 1 48 ? ? ? PRD_900130 H13 H13 H 0 1 N Y N -7.708 -12.866 51.400 -1.378 4.236 2.157 NDG 1 HO1 polymer 1 1 49 ? ? ? PRD_900130 H14 H14 H 0 1 N N N -9.419 -12.622 46.334 -2.612 -0.388 0.072 GAL 2 H1 polymer 1 1 50 ? ? ? PRD_900130 H15 H15 H 0 1 N N N -11.222 -14.437 44.726 -0.912 -2.576 -1.210 GAL 2 H2 polymer 1 1 51 ? ? ? PRD_900130 H16 H16 H 0 1 N N N -10.067 -11.847 43.802 -3.775 -2.637 -0.147 GAL 2 H3 polymer 1 1 52 ? ? ? PRD_900130 H17 H17 H 0 1 N N N -12.157 -10.866 43.833 -2.869 -4.149 1.576 GAL 2 H4 polymer 1 1 53 ? ? ? PRD_900130 H18 H18 H 0 1 N N N -10.813 -10.703 45.817 -2.921 -1.734 2.071 GAL 2 H5 polymer 1 1 54 ? ? ? PRD_900130 H19 H19 H 0 1 N N N -13.034 -9.720 45.749 -1.900 -3.339 3.712 GAL 2 H61 polymer 1 1 55 ? ? ? PRD_900130 H20 H20 H 0 1 N N N -13.683 -11.207 46.521 -0.303 -2.987 3.010 GAL 2 H62 polymer 1 1 56 ? ? ? PRD_900130 H21 H21 H 0 1 N Y N -9.323 -14.407 43.422 -1.934 -1.041 -2.731 GAL 2 HO2 polymer 1 1 57 ? ? ? PRD_900130 H22 H22 H 0 1 N Y N -11.522 -12.293 42.037 -3.321 -4.094 -1.989 GAL 2 HO3 polymer 1 1 58 ? ? ? PRD_900130 H23 H23 H 0 1 N Y N -13.930 -11.991 44.793 -1.007 -4.953 0.310 GAL 2 HO4 polymer 1 1 59 ? ? ? PRD_900130 H24 H24 H 0 1 N Y N -13.370 -9.492 47.993 -0.780 -1.583 4.883 GAL 2 HO6 polymer 1 1 60 ? ? ? PRD_900130 H25 H25 H 0 1 N N N -12.810 -15.697 50.223 3.365 1.707 -0.832 FUC 3 H1 polymer 1 1 61 ? ? ? PRD_900130 H26 H26 H 0 1 N N N -15.114 -15.027 49.885 4.921 -0.172 -0.468 FUC 3 H2 polymer 1 1 62 ? ? ? PRD_900130 H27 H27 H 0 1 N N N -13.945 -12.612 48.531 2.609 -1.425 1.085 FUC 3 H3 polymer 1 1 63 ? ? ? PRD_900130 H28 H28 H 0 1 N N N -15.122 -13.397 46.639 2.618 -3.122 -0.701 FUC 3 H4 polymer 1 1 64 ? ? ? PRD_900130 H29 H29 H 0 1 N N N -12.937 -14.315 46.668 1.144 -1.165 -0.976 FUC 3 H5 polymer 1 1 65 ? ? ? PRD_900130 H30 H30 H 0 1 N N N -13.269 -16.546 45.767 1.234 -2.850 -2.793 FUC 3 H61 polymer 1 1 66 ? ? ? PRD_900130 H31 H31 H 0 1 N N N -14.938 -16.551 46.431 0.933 -1.222 -3.446 FUC 3 H62 polymer 1 1 67 ? ? ? PRD_900130 H32 H32 H 0 1 N N N -14.479 -15.365 45.162 2.556 -1.944 -3.568 FUC 3 H63 polymer 1 1 68 ? ? ? PRD_900130 H33 H33 H 0 1 N Y N -14.993 -13.101 51.144 4.698 1.442 1.281 FUC 3 HO2 polymer 1 1 69 ? ? ? PRD_900130 H34 H34 H 0 1 N Y N -16.235 -12.157 48.340 4.801 -1.935 1.896 FUC 3 HO3 polymer 1 1 70 ? ? ? PRD_900130 H35 H35 H 0 1 N Y N -16.217 -15.453 46.899 4.021 -2.706 -2.589 FUC 3 HO4 polymer 1 1 71 ? ? ? # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PRD_900130 C1 C2 SING N N 1 PRD_900130 C1 O1 SING N N 2 PRD_900130 C1 O6 SING N N 3 PRD_900130 C1 H1 SING N N 4 PRD_900130 C2 C3 SING N N 5 PRD_900130 C2 N1 SING N N 6 PRD_900130 C2 H2 SING N N 7 PRD_900130 C3 C4 SING N N 8 PRD_900130 C3 O2 SING N N 9 PRD_900130 C3 H3 SING N N 10 PRD_900130 C4 C5 SING N N 11 PRD_900130 C4 O3 SING N N 12 PRD_900130 C4 H4 SING N N 13 PRD_900130 C5 C6 SING N N 14 PRD_900130 C5 O1 SING N N 15 PRD_900130 C5 H5 SING N N 16 PRD_900130 C6 O4 SING N N 17 PRD_900130 C6 H6 SING N N 18 PRD_900130 C6 H7 SING N N 19 PRD_900130 C7 C8 SING N N 20 PRD_900130 C7 O5 DOUB N N 21 PRD_900130 C7 N1 SING N N 22 PRD_900130 C8 H8 SING N N 23 PRD_900130 C8 H9 SING N N 24 PRD_900130 C8 H10 SING N N 25 PRD_900130 O4 H11 SING N N 26 PRD_900130 N1 H12 SING N N 27 PRD_900130 O6 H13 SING N N 28 PRD_900130 C9 C10 SING N N 29 PRD_900130 C9 O10 SING N N 30 PRD_900130 C9 H14 SING N N 31 PRD_900130 C10 C11 SING N N 32 PRD_900130 C10 O7 SING N N 33 PRD_900130 C10 H15 SING N N 34 PRD_900130 C11 C12 SING N N 35 PRD_900130 C11 O8 SING N N 36 PRD_900130 C11 H16 SING N N 37 PRD_900130 C12 C13 SING N N 38 PRD_900130 C12 O9 SING N N 39 PRD_900130 C12 H17 SING N N 40 PRD_900130 C13 C14 SING N N 41 PRD_900130 C13 O10 SING N N 42 PRD_900130 C13 H18 SING N N 43 PRD_900130 C14 O11 SING N N 44 PRD_900130 C14 H19 SING N N 45 PRD_900130 C14 H20 SING N N 46 PRD_900130 O7 H21 SING N N 47 PRD_900130 O8 H22 SING N N 48 PRD_900130 O9 H23 SING N N 49 PRD_900130 O11 H24 SING N N 50 PRD_900130 C15 C16 SING N N 51 PRD_900130 C15 O15 SING N N 52 PRD_900130 C15 H25 SING N N 53 PRD_900130 C16 C17 SING N N 54 PRD_900130 C16 O12 SING N N 55 PRD_900130 C16 H26 SING N N 56 PRD_900130 C17 C18 SING N N 57 PRD_900130 C17 O13 SING N N 58 PRD_900130 C17 H27 SING N N 59 PRD_900130 C18 C19 SING N N 60 PRD_900130 C18 O14 SING N N 61 PRD_900130 C18 H28 SING N N 62 PRD_900130 C19 C20 SING N N 63 PRD_900130 C19 O15 SING N N 64 PRD_900130 C19 H29 SING N N 65 PRD_900130 C20 H30 SING N N 66 PRD_900130 C20 H31 SING N N 67 PRD_900130 C20 H32 SING N N 68 PRD_900130 O12 H33 SING N N 69 PRD_900130 O13 H34 SING N N 70 PRD_900130 O14 H35 SING N N 71 PRD_900130 O2 C9 SING N N 72 PRD_900130 O3 C15 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PRD_900130 InChI InChI 1.06 "InChI=1S/C20H35NO15/c1-5-10(25)12(27)14(29)19(32-5)35-16-8(4-23)33-18(31)9(21-6(2)24)17(16)36-20-15(30)13(28)11(26)7(3-22)34-20/h5,7-20,22-23,25-31H,3-4H2,1-2H3,(H,21,24)/t5-,7+,8+,9+,10+,11-,12+,13-,14-,15+,16+,17+,18-,19-,20-/m0/s1" PRD_900130 InChIKey InChI 1.06 CFDVGUXRLQWLJX-QNTOMPQOSA-N PRD_900130 SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1O[C@@H](O[C@@H]2[C@@H](CO)O[C@H](O)[C@H](NC(C)=O)[C@H]2O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@@H](O)[C@H](O)[C@@H]1O" PRD_900130 SMILES CACTVS 3.385 "C[CH]1O[CH](O[CH]2[CH](CO)O[CH](O)[CH](NC(C)=O)[CH]2O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)[CH](O)[CH](O)[CH]1O" PRD_900130 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O[C@@H]2[C@H](O[C@@H]([C@@H]([C@H]2O[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O)NC(=O)C)O)CO)O)O)O" PRD_900130 SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)OC2C(OC(C(C2OC3C(C(C(C(O3)CO)O)O)O)NC(=O)C)O)CO)O)O)O" # _pdbx_chem_comp_identifier.comp_id PRD_900130 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier ;~{N}-[(2~{S},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-4-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris (oxidanyl)oxan-2-yl]oxy-5-[(2~{R},3~{S},4~{R},5~{S},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-oxidanyl-oxan-3- yl]ethanamide ; #