data_PRD_000205
# 
_pdbx_reference_molecule.prd_id                       PRD_000205 
_pdbx_reference_molecule.name                         "DESVANCOSAMINYL VANCOMYCIN" 
_pdbx_reference_molecule.represent_as                 polymer 
_pdbx_reference_molecule.type                         Glycopeptide 
_pdbx_reference_molecule.type_evidence_code           ? 
_pdbx_reference_molecule.class                        Antibiotic 
_pdbx_reference_molecule.class_evidence_code          ? 
_pdbx_reference_molecule.formula                      "C59 H62 Cl2 N8 O22" 
_pdbx_reference_molecule.formula_weight               1306.070 
_pdbx_reference_molecule.chem_comp_id                 ? 
_pdbx_reference_molecule.release_status               REL 
_pdbx_reference_molecule.replaces                     ? 
_pdbx_reference_molecule.replaced_by                  ? 
_pdbx_reference_molecule.compound_details             
;VANCOMYCIN DESVANCOSAMINYL IS A TRICYCLIC GLYCOPEPTIDE, A MEMBER OF THE VANCOMYCIN FAMILY. THE SCAFFOLD IS A
HEPTAPEPTIDE WITH THE CONFIGURATION D-D-L-D-D-L-L. IT IS FURTHER GLYCOSYLATED BY A D-GLUCOSE HERE, DESVANCOSAMINYL
ANCOMYCIN IS REPRESENTED BY GROUPING TOGETHER THE SEQUENCE (SEQRES) AND THE LIGAND (HET) BGC.
;
_pdbx_reference_molecule.description                  
;DESVANCOSAMINYL VANCOMYCIN IS AN INTERMIDIATE IN VANCOMYCIN BIOSYNTHESIS. IT IS TRICYCLIC GLYCOPEPTIDE, GLYCOSYLATED
BY D-GLUCOSE (RESIDUE 8) ON RESIDUE 4.
;
_pdbx_reference_molecule.representative_PDB_id_code   1rrv 
# 
loop_
_pdbx_reference_entity_list.prd_id 
_pdbx_reference_entity_list.ref_entity_id 
_pdbx_reference_entity_list.component_id 
_pdbx_reference_entity_list.type 
_pdbx_reference_entity_list.details 
PRD_000205 1 1 polymer     "PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 7" 
PRD_000205 2 2 non-polymer BGC                                     
# 
_pdbx_reference_entity_nonpoly.prd_id          PRD_000205 
_pdbx_reference_entity_nonpoly.ref_entity_id   2 
_pdbx_reference_entity_nonpoly.name            BETA-D-GLUCOSE 
_pdbx_reference_entity_nonpoly.chem_comp_id    BGC 
_pdbx_reference_entity_nonpoly.details         ? 
# 
_pdbx_reference_entity_link.prd_id              PRD_000205 
_pdbx_reference_entity_link.link_id             1 
_pdbx_reference_entity_link.link_class          PN 
_pdbx_reference_entity_link.ref_entity_id_1     1 
_pdbx_reference_entity_link.entity_seq_num_1    4 
_pdbx_reference_entity_link.comp_id_1           GHP 
_pdbx_reference_entity_link.atom_id_1           O4 
_pdbx_reference_entity_link.ref_entity_id_2     2 
_pdbx_reference_entity_link.entity_seq_num_2    ? 
_pdbx_reference_entity_link.comp_id_2           BGC 
_pdbx_reference_entity_link.atom_id_2           C1 
_pdbx_reference_entity_link.value_order         sing 
_pdbx_reference_entity_link.component_1         1 
_pdbx_reference_entity_link.component_2         2 
_pdbx_reference_entity_link.details             ? 
_pdbx_reference_entity_link.nonpoly_res_num_1   ? 
_pdbx_reference_entity_link.nonpoly_res_num_2   ? 
# 
loop_
_pdbx_reference_entity_poly_link.prd_id 
_pdbx_reference_entity_poly_link.ref_entity_id 
_pdbx_reference_entity_poly_link.link_id 
_pdbx_reference_entity_poly_link.atom_id_1 
_pdbx_reference_entity_poly_link.comp_id_1 
_pdbx_reference_entity_poly_link.entity_seq_num_1 
_pdbx_reference_entity_poly_link.atom_id_2 
_pdbx_reference_entity_poly_link.comp_id_2 
_pdbx_reference_entity_poly_link.entity_seq_num_2 
_pdbx_reference_entity_poly_link.value_order 
_pdbx_reference_entity_poly_link.component_id 
_pdbx_reference_entity_poly_link.details 
_pdbx_reference_entity_poly_link.insert_code_1 
_pdbx_reference_entity_poly_link.insert_code_2 
PRD_000205 1 1 C  MLU 1 N   OMZ 2 sing 1 ? ? ? 
PRD_000205 1 2 C  OMZ 2 N   ASN 3 sing 1 ? ? ? 
PRD_000205 1 3 OH OMZ 2 C5  GHP 4 sing 1 ? ? ? 
PRD_000205 1 4 C  ASN 3 N   GHP 4 sing 1 ? ? ? 
PRD_000205 1 5 C  GHP 4 N   GHP 5 sing 1 ? ? ? 
PRD_000205 1 6 C3 GHP 4 OCZ OMY 6 sing 1 ? ? ? 
PRD_000205 1 7 C3 GHP 5 CG1 3FG 7 sing 1 ? ? ? 
PRD_000205 1 8 C  GHP 5 N   OMY 6 sing 1 ? ? ? 
PRD_000205 1 9 C  OMY 6 N   3FG 7 sing 1 ? ? ? 
# 
_pdbx_reference_entity_poly.prd_id          PRD_000205 
_pdbx_reference_entity_poly.ref_entity_id   1 
_pdbx_reference_entity_poly.db_code         NOR00681 
_pdbx_reference_entity_poly.db_name         NOR 
_pdbx_reference_entity_poly.type            peptide-like 
# 
_pdbx_reference_entity_sequence.prd_id          PRD_000205 
_pdbx_reference_entity_sequence.ref_entity_id   1 
_pdbx_reference_entity_sequence.type            peptide-like 
_pdbx_reference_entity_sequence.NRP_flag        Y 
# 
loop_
_pdbx_reference_entity_poly_seq.prd_id 
_pdbx_reference_entity_poly_seq.ref_entity_id 
_pdbx_reference_entity_poly_seq.num 
_pdbx_reference_entity_poly_seq.mon_id 
_pdbx_reference_entity_poly_seq.parent_mon_id 
_pdbx_reference_entity_poly_seq.hetero 
_pdbx_reference_entity_poly_seq.observed 
PRD_000205 1 1 MLU LEU N Y 
PRD_000205 1 2 OMZ TYR N Y 
PRD_000205 1 3 ASN ASN N Y 
PRD_000205 1 4 GHP PHE N Y 
PRD_000205 1 5 GHP PHE N Y 
PRD_000205 1 6 OMY TYR N Y 
PRD_000205 1 7 3FG PHE N Y 
# 
_pdbx_reference_entity_src_nat.prd_id                PRD_000205 
_pdbx_reference_entity_src_nat.ref_entity_id         1 
_pdbx_reference_entity_src_nat.ordinal               1 
_pdbx_reference_entity_src_nat.taxid                 31958 
_pdbx_reference_entity_src_nat.organism_scientific   "AMYCOLATOPSIS ORIENTALIS" 
_pdbx_reference_entity_src_nat.source                ? 
_pdbx_reference_entity_src_nat.db_code               NOR00681 
_pdbx_reference_entity_src_nat.db_name               Norine 
_pdbx_reference_entity_src_nat.strain                ? 
# 
loop_
_pdbx_prd_audit.prd_id 
_pdbx_prd_audit.date 
_pdbx_prd_audit.processing_site 
_pdbx_prd_audit.action_type 
PRD_000205 2012-02-03 RCSB "Create molecule"    
PRD_000205 2012-07-09 PDBE "Other modification" 
PRD_000205 2012-12-12 RCSB "Initial release"    
PRD_000205 2013-06-03 RCSB "Other modification" 
PRD_000205 2017-05-04 RCSB "Other modification" 
PRD_000205 2020-07-29 RCSB "Other modification" 
PRD_000205 2023-09-20 PDBE "Modify audit"       
#