data_PRD_000222 # _pdbx_reference_molecule.prd_id PRD_000222 _pdbx_reference_molecule.name "RAMOPLANIN A2" _pdbx_reference_molecule.represent_as polymer _pdbx_reference_molecule.type Lipoglycopeptide _pdbx_reference_molecule.type_evidence_code ? _pdbx_reference_molecule.class Antibiotic _pdbx_reference_molecule.class_evidence_code ? _pdbx_reference_molecule.formula "C119 H154 Cl N21 O40" _pdbx_reference_molecule.formula_weight 2554.066 _pdbx_reference_molecule.chem_comp_id ? _pdbx_reference_molecule.release_status REL _pdbx_reference_molecule.replaces ? _pdbx_reference_molecule.replaced_by ? _pdbx_reference_molecule.compound_details ;RAMOPLANIN IS A CYCLIC LIPOGLYCOPEPTIDE. HERE, RAMOPLANIN IS REPRESENTED BY GROUPING TOGETHER THE SEQUENCE (SEQRES) A FATTY ACID (FA7) AND TWO LIGANDS (HET) MAN. ; _pdbx_reference_molecule.description ;RAMOPLANIN A2 IS A CYCLIC HEPTADECAMER LIPOGLYCODEPSIPEPTIDE. THE SCAFFOLD IS A HEPTA CYCLIC PEPTIDE GLYCOSYLATED BY ONE DISACCHARIDE AND A FATTY ACID AT THE N-TERM. ; _pdbx_reference_molecule.representative_PDB_id_code 1dsr # loop_ _pdbx_reference_entity_list.prd_id _pdbx_reference_entity_list.ref_entity_id _pdbx_reference_entity_list.component_id _pdbx_reference_entity_list.type _pdbx_reference_entity_list.details PRD_000222 1 1 polymer "PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 17" PRD_000222 2 2 non-polymer "SUGAR RESIDUES MAN" PRD_000222 2 3 non-polymer "SUGAR RESIDUES MAN" PRD_000222 3 4 non-polymer "FATTY ACID RESIDUE FA7" # loop_ _pdbx_reference_entity_nonpoly.prd_id _pdbx_reference_entity_nonpoly.ref_entity_id _pdbx_reference_entity_nonpoly.name _pdbx_reference_entity_nonpoly.chem_comp_id _pdbx_reference_entity_nonpoly.details PRD_000222 2 ALPHA-D-MANNOSE MAN ? PRD_000222 3 "(2Z,4E)-7-methylocta-2,4-dienoic acid" FA7 ? # loop_ _pdbx_reference_entity_link.prd_id _pdbx_reference_entity_link.link_id _pdbx_reference_entity_link.link_class _pdbx_reference_entity_link.ref_entity_id_1 _pdbx_reference_entity_link.entity_seq_num_1 _pdbx_reference_entity_link.comp_id_1 _pdbx_reference_entity_link.atom_id_1 _pdbx_reference_entity_link.ref_entity_id_2 _pdbx_reference_entity_link.entity_seq_num_2 _pdbx_reference_entity_link.comp_id_2 _pdbx_reference_entity_link.atom_id_2 _pdbx_reference_entity_link.value_order _pdbx_reference_entity_link.component_1 _pdbx_reference_entity_link.component_2 _pdbx_reference_entity_link.details _pdbx_reference_entity_link.nonpoly_res_num_1 _pdbx_reference_entity_link.nonpoly_res_num_2 PRD_000222 1 PN 1 1 ASN N 3 ? FA7 C1 sing 1 4 ? ? ? PRD_000222 2 PN 1 11 D4P O4 2 ? MAN C1 sing 1 2 ? ? ? PRD_000222 3 NN 2 ? MAN O2 2 ? MAN C1 sing 2 3 ? ? ? # loop_ _pdbx_reference_entity_poly_link.prd_id _pdbx_reference_entity_poly_link.ref_entity_id _pdbx_reference_entity_poly_link.link_id _pdbx_reference_entity_poly_link.atom_id_1 _pdbx_reference_entity_poly_link.comp_id_1 _pdbx_reference_entity_poly_link.entity_seq_num_1 _pdbx_reference_entity_poly_link.atom_id_2 _pdbx_reference_entity_poly_link.comp_id_2 _pdbx_reference_entity_poly_link.entity_seq_num_2 _pdbx_reference_entity_poly_link.value_order _pdbx_reference_entity_poly_link.component_id _pdbx_reference_entity_poly_link.details _pdbx_reference_entity_poly_link.insert_code_1 _pdbx_reference_entity_poly_link.insert_code_2 PRD_000222 1 1 C ASN 1 N AHB 2 sing 1 ? ? ? PRD_000222 1 2 OB AHB 2 C CHP 17 sing 1 ? ? ? PRD_000222 1 3 C AHB 2 N GHP 3 sing 1 ? ? ? PRD_000222 1 4 C GHP 3 N ORD 4 sing 1 ? ? ? PRD_000222 1 5 C ORD 4 N 2TL 5 sing 1 ? ? ? PRD_000222 1 6 C 2TL 5 N D4P 6 sing 1 ? ? ? PRD_000222 1 7 C D4P 6 N GHP 7 sing 1 ? ? ? PRD_000222 1 8 C GHP 7 N ALO 8 sing 1 ? ? ? PRD_000222 1 9 C ALO 8 N PHE 9 sing 1 ? ? ? PRD_000222 1 10 C PHE 9 N ORD 10 sing 1 ? ? ? PRD_000222 1 11 C ORD 10 N D4P 11 sing 1 ? ? ? PRD_000222 1 12 C D4P 11 N 2TL 12 sing 1 ? ? ? PRD_000222 1 13 C 2TL 12 N D4P 13 sing 1 ? ? ? PRD_000222 1 14 C D4P 13 N GLY 14 sing 1 ? ? ? PRD_000222 1 15 C GLY 14 N LEU 15 sing 1 ? ? ? PRD_000222 1 16 C LEU 15 N DAL 16 sing 1 ? ? ? PRD_000222 1 17 C DAL 16 N CHP 17 sing 1 ? ? ? # _pdbx_reference_entity_poly.prd_id PRD_000222 _pdbx_reference_entity_poly.ref_entity_id 1 _pdbx_reference_entity_poly.db_code NOR00844 _pdbx_reference_entity_poly.db_name NOR _pdbx_reference_entity_poly.type peptide-like # _pdbx_reference_entity_sequence.prd_id PRD_000222 _pdbx_reference_entity_sequence.ref_entity_id 1 _pdbx_reference_entity_sequence.type peptide-like _pdbx_reference_entity_sequence.NRP_flag Y # loop_ _pdbx_reference_entity_poly_seq.prd_id _pdbx_reference_entity_poly_seq.ref_entity_id _pdbx_reference_entity_poly_seq.num _pdbx_reference_entity_poly_seq.mon_id _pdbx_reference_entity_poly_seq.parent_mon_id _pdbx_reference_entity_poly_seq.hetero _pdbx_reference_entity_poly_seq.observed PRD_000222 1 1 ASN ASN N Y PRD_000222 1 2 AHB ASN N Y PRD_000222 1 3 GHP GLY N Y PRD_000222 1 4 ORD ARG N Y PRD_000222 1 5 2TL THR N Y PRD_000222 1 6 D4P GLY N Y PRD_000222 1 7 GHP GLY N Y PRD_000222 1 8 ALO THR N Y PRD_000222 1 9 PHE PHE N Y PRD_000222 1 10 ORD ARG N Y PRD_000222 1 11 D4P GLY N Y PRD_000222 1 12 2TL THR N Y PRD_000222 1 13 D4P GLY N Y PRD_000222 1 14 GLY GLY N Y PRD_000222 1 15 LEU LEU N Y PRD_000222 1 16 DAL ALA N Y PRD_000222 1 17 CHP GLY N Y # _pdbx_reference_entity_src_nat.prd_id PRD_000222 _pdbx_reference_entity_src_nat.ref_entity_id 1 _pdbx_reference_entity_src_nat.ordinal 1 _pdbx_reference_entity_src_nat.taxid 1971 _pdbx_reference_entity_src_nat.organism_scientific "Actinoplanes strain ATCC 33076" _pdbx_reference_entity_src_nat.source ? _pdbx_reference_entity_src_nat.db_code NOR00844 _pdbx_reference_entity_src_nat.db_name Norine _pdbx_reference_entity_src_nat.strain ? # loop_ _pdbx_prd_audit.prd_id _pdbx_prd_audit.date _pdbx_prd_audit.processing_site _pdbx_prd_audit.action_type PRD_000222 2012-02-03 RCSB "Create molecule" PRD_000222 2012-07-09 PDBE "Other modification" PRD_000222 2012-07-31 RCSB "Other modification" PRD_000222 2012-12-12 RCSB "Initial release" PRD_000222 2013-06-03 RCSB "Other modification" PRD_000222 2017-05-04 RCSB "Other modification" PRD_000222 2023-09-20 PDBE "Modify audit" #