data_PRD_000227 # _pdbx_reference_molecule.prd_id PRD_000227 _pdbx_reference_molecule.name "VIRGINIAMYCIN S1" _pdbx_reference_molecule.represent_as polymer _pdbx_reference_molecule.type "Cyclic peptide" _pdbx_reference_molecule.type_evidence_code ? _pdbx_reference_molecule.class "Antibiotic, Antimicrobial" _pdbx_reference_molecule.class_evidence_code ? _pdbx_reference_molecule.formula "C43 H49 N7 O10" _pdbx_reference_molecule.formula_weight 823.890 _pdbx_reference_molecule.chem_comp_id ? _pdbx_reference_molecule.release_status REL _pdbx_reference_molecule.replaces ? _pdbx_reference_molecule.replaced_by ? _pdbx_reference_molecule.compound_details ? _pdbx_reference_molecule.description ;VIRGINIAMYCIN S1 IS A CYLIC HEPTAPEPTIDE. THE RING IS GENERATED BY LINKING RESIDUE 2 SIDE-CHAIN AND RESIDUE 7 MAIN-CHAIN. ; _pdbx_reference_molecule.representative_PDB_id_code 1yit # _pdbx_reference_entity_list.prd_id PRD_000227 _pdbx_reference_entity_list.ref_entity_id 1 _pdbx_reference_entity_list.component_id 1 _pdbx_reference_entity_list.type polymer _pdbx_reference_entity_list.details "PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 7" # loop_ _pdbx_reference_entity_poly_link.prd_id _pdbx_reference_entity_poly_link.ref_entity_id _pdbx_reference_entity_poly_link.link_id _pdbx_reference_entity_poly_link.atom_id_1 _pdbx_reference_entity_poly_link.comp_id_1 _pdbx_reference_entity_poly_link.entity_seq_num_1 _pdbx_reference_entity_poly_link.atom_id_2 _pdbx_reference_entity_poly_link.comp_id_2 _pdbx_reference_entity_poly_link.entity_seq_num_2 _pdbx_reference_entity_poly_link.value_order _pdbx_reference_entity_poly_link.component_id _pdbx_reference_entity_poly_link.details _pdbx_reference_entity_poly_link.insert_code_1 _pdbx_reference_entity_poly_link.insert_code_2 PRD_000227 1 1 C MHW 1 N THR 2 sing 1 ? ? ? PRD_000227 1 2 C THR 2 N DBB 3 sing 1 ? ? ? PRD_000227 1 3 OG1 THR 2 C 004 7 sing 1 ? ? ? PRD_000227 1 4 C DBB 3 N PRO 4 sing 1 ? ? ? PRD_000227 1 5 C PRO 4 N MEA 5 sing 1 ? ? ? PRD_000227 1 6 C MEA 5 N MHV 6 sing 1 ? ? ? PRD_000227 1 7 C MHV 6 N 004 7 sing 1 ? ? ? # _pdbx_reference_entity_poly.prd_id PRD_000227 _pdbx_reference_entity_poly.ref_entity_id 1 _pdbx_reference_entity_poly.db_code NOR00679 _pdbx_reference_entity_poly.db_name NOR _pdbx_reference_entity_poly.type peptide-like # _pdbx_reference_entity_sequence.prd_id PRD_000227 _pdbx_reference_entity_sequence.ref_entity_id 1 _pdbx_reference_entity_sequence.type peptide-like _pdbx_reference_entity_sequence.NRP_flag Y # loop_ _pdbx_reference_entity_poly_seq.prd_id _pdbx_reference_entity_poly_seq.ref_entity_id _pdbx_reference_entity_poly_seq.num _pdbx_reference_entity_poly_seq.mon_id _pdbx_reference_entity_poly_seq.parent_mon_id _pdbx_reference_entity_poly_seq.hetero _pdbx_reference_entity_poly_seq.observed PRD_000227 1 1 MHW ? N Y PRD_000227 1 2 THR THR N Y PRD_000227 1 3 DBB ALA N Y PRD_000227 1 4 PRO PRO N Y PRD_000227 1 5 MEA PHE N Y PRD_000227 1 6 MHV ? N Y PRD_000227 1 7 004 GLY N Y # loop_ _pdbx_reference_entity_src_nat.prd_id _pdbx_reference_entity_src_nat.ref_entity_id _pdbx_reference_entity_src_nat.ordinal _pdbx_reference_entity_src_nat.taxid _pdbx_reference_entity_src_nat.organism_scientific _pdbx_reference_entity_src_nat.source _pdbx_reference_entity_src_nat.db_code _pdbx_reference_entity_src_nat.db_name _pdbx_reference_entity_src_nat.strain PRD_000227 1 1 1961 "Streptomyces virginiae" ? NOR00679 Norine ? PRD_000227 1 2 68212 "Streptomyces graminofaciens" Merck ? ? ? PRD_000227 1 3 1961 "Streptomyces virginiae" Merck ? ? ? PRD_000227 1 4 68248 "Streptomyces ostreogriseus" Merck ? ? ? # loop_ _pdbx_prd_audit.prd_id _pdbx_prd_audit.date _pdbx_prd_audit.processing_site _pdbx_prd_audit.action_type PRD_000227 2012-02-08 RCSB "Create molecule" PRD_000227 2012-07-09 PDBE "Other modification" PRD_000227 2012-07-31 RCSB "Other modification" PRD_000227 2012-11-28 RCSB "Modify class" PRD_000227 2012-12-12 RCSB "Initial release" PRD_000227 2013-06-03 RCSB "Other modification" PRD_000227 2017-05-04 RCSB "Other modification" PRD_000227 2020-07-29 RCSB "Other modification" PRD_000227 2023-09-20 PDBE "Modify audit" #