data_PRD_000492 # _pdbx_reference_molecule.prd_id PRD_000492 _pdbx_reference_molecule.name uk63052 _pdbx_reference_molecule.represent_as polymer _pdbx_reference_molecule.type "Cyclic depsipeptide" _pdbx_reference_molecule.type_evidence_code ? _pdbx_reference_molecule.class Antibiotic _pdbx_reference_molecule.class_evidence_code ? _pdbx_reference_molecule.formula "C56 H68 N10 O14 S2" _pdbx_reference_molecule.formula_weight 1169.328 _pdbx_reference_molecule.chem_comp_id ? _pdbx_reference_molecule.release_status REL _pdbx_reference_molecule.replaces ? _pdbx_reference_molecule.replaced_by ? _pdbx_reference_molecule.compound_details ;QUINOMYCIN UK63052 IS A BICYCLIC OCTADEPSIPEPTIDE, A MEMBER OF THE QUINOXALINE CLASS OF ANTIBIOTICS. HERE, QUINOMYCIN IS REPRESENTED BY GROUPING TOGETHER THE SEQUENCE (SEQRES) AND THE TWO LIGANDS (HET) HQU ; _pdbx_reference_molecule.description ;QUINOMYCIN UK63052 IS A BICYCLIC OCTADEPSIPEPTIDE. BICYCLIZATION IS ACHIEVED BY LINKING THE N- AND THE C- TERMINI, AND A THIOACETAL BOND BETWEEN RESIDUES 3 AND 7. THE TWO HYDROXYQUINOXALINE CHROMOPHORES ARE LINKED TO THE D-SERINE RESIDUES, RESIDUES 1 AND 5. ; _pdbx_reference_molecule.representative_PDB_id_code 193d # loop_ _pdbx_reference_entity_list.prd_id _pdbx_reference_entity_list.ref_entity_id _pdbx_reference_entity_list.component_id _pdbx_reference_entity_list.type _pdbx_reference_entity_list.details PRD_000492 1 1 polymer "PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 8" PRD_000492 2 2 non-polymer "3-HYDROXYQUINALDIC ACID CHROMOPHORE" PRD_000492 2 3 non-polymer "3-HYDROXYQUINALDIC ACID CHROMOPHORE" # _pdbx_reference_entity_nonpoly.prd_id PRD_000492 _pdbx_reference_entity_nonpoly.ref_entity_id 2 _pdbx_reference_entity_nonpoly.name "3-HYDROXYQUINALDIC ACID CHROMOPHORE" _pdbx_reference_entity_nonpoly.chem_comp_id HQU _pdbx_reference_entity_nonpoly.details ? # loop_ _pdbx_reference_entity_link.prd_id _pdbx_reference_entity_link.link_id _pdbx_reference_entity_link.link_class _pdbx_reference_entity_link.ref_entity_id_1 _pdbx_reference_entity_link.entity_seq_num_1 _pdbx_reference_entity_link.comp_id_1 _pdbx_reference_entity_link.atom_id_1 _pdbx_reference_entity_link.ref_entity_id_2 _pdbx_reference_entity_link.entity_seq_num_2 _pdbx_reference_entity_link.comp_id_2 _pdbx_reference_entity_link.atom_id_2 _pdbx_reference_entity_link.value_order _pdbx_reference_entity_link.component_1 _pdbx_reference_entity_link.component_2 _pdbx_reference_entity_link.details _pdbx_reference_entity_link.nonpoly_res_num_1 _pdbx_reference_entity_link.nonpoly_res_num_2 PRD_000492 1 PN 1 1 DSN N 2 ? HQU C sing 1 2 ? ? ? PRD_000492 2 PN 1 5 DSN N 2 ? HQU C sing 1 3 ? ? ? # loop_ _pdbx_reference_entity_poly_link.prd_id _pdbx_reference_entity_poly_link.ref_entity_id _pdbx_reference_entity_poly_link.link_id _pdbx_reference_entity_poly_link.atom_id_1 _pdbx_reference_entity_poly_link.comp_id_1 _pdbx_reference_entity_poly_link.entity_seq_num_1 _pdbx_reference_entity_poly_link.atom_id_2 _pdbx_reference_entity_poly_link.comp_id_2 _pdbx_reference_entity_poly_link.entity_seq_num_2 _pdbx_reference_entity_poly_link.value_order _pdbx_reference_entity_poly_link.component_id _pdbx_reference_entity_poly_link.details _pdbx_reference_entity_poly_link.insert_code_1 _pdbx_reference_entity_poly_link.insert_code_2 PRD_000492 1 1 C DSN 1 N ALA 2 sing 1 ? ? ? PRD_000492 1 2 OG DSN 1 C CPC 8 sing 1 ? ? ? PRD_000492 1 3 C ALA 2 N NYB 3 sing 1 ? ? ? PRD_000492 1 4 CB NYB 3 SG NCY 7 sing 1 ? ? ? PRD_000492 1 5 C NYB 3 N CPC 4 sing 1 ? ? ? PRD_000492 1 6 C CPC 4 OG DSN 5 sing 1 ? ? ? PRD_000492 1 7 C DSN 5 N ALA 6 sing 1 ? ? ? PRD_000492 1 8 C ALA 6 N NCY 7 sing 1 ? ? ? PRD_000492 1 9 C NCY 7 N CPC 8 sing 1 ? ? ? # _pdbx_reference_entity_poly.prd_id PRD_000492 _pdbx_reference_entity_poly.ref_entity_id 1 _pdbx_reference_entity_poly.db_code ? _pdbx_reference_entity_poly.db_name ? _pdbx_reference_entity_poly.type peptide-like # _pdbx_reference_entity_sequence.prd_id PRD_000492 _pdbx_reference_entity_sequence.ref_entity_id 1 _pdbx_reference_entity_sequence.type peptide-like _pdbx_reference_entity_sequence.NRP_flag Y # loop_ _pdbx_reference_entity_poly_seq.prd_id _pdbx_reference_entity_poly_seq.ref_entity_id _pdbx_reference_entity_poly_seq.num _pdbx_reference_entity_poly_seq.mon_id _pdbx_reference_entity_poly_seq.parent_mon_id _pdbx_reference_entity_poly_seq.hetero _pdbx_reference_entity_poly_seq.observed PRD_000492 1 1 DSN SER N Y PRD_000492 1 2 ALA ALA N Y PRD_000492 1 3 NYB CYS N Y PRD_000492 1 4 CPC ? N Y PRD_000492 1 5 DSN SER N Y PRD_000492 1 6 ALA ALA N Y PRD_000492 1 7 NCY ? N Y PRD_000492 1 8 CPC ? N Y # _pdbx_reference_entity_src_nat.prd_id PRD_000492 _pdbx_reference_entity_src_nat.ref_entity_id 1 _pdbx_reference_entity_src_nat.ordinal 1 _pdbx_reference_entity_src_nat.taxid ? _pdbx_reference_entity_src_nat.organism_scientific "Streptomyces braegensis, N617-29" _pdbx_reference_entity_src_nat.source PubMed _pdbx_reference_entity_src_nat.db_code ? _pdbx_reference_entity_src_nat.db_name ? _pdbx_reference_entity_src_nat.strain ? # loop_ _pdbx_prd_audit.prd_id _pdbx_prd_audit.date _pdbx_prd_audit.processing_site _pdbx_prd_audit.action_type PRD_000492 2012-02-08 RCSB "Create molecule" PRD_000492 2012-07-09 PDBE "Other modification" PRD_000492 2012-07-31 RCSB "Other modification" PRD_000492 2012-12-12 RCSB "Initial release" PRD_000492 2017-05-04 RCSB "Other modification" PRD_000492 2023-09-20 PDBE "Modify audit" #