data_PRD_000882 # _pdbx_reference_molecule.prd_id PRD_000882 _pdbx_reference_molecule.name "MonodeChloro- Teicoplanin A2-2" _pdbx_reference_molecule.represent_as polymer _pdbx_reference_molecule.type Glycopeptide _pdbx_reference_molecule.type_evidence_code ? _pdbx_reference_molecule.class Antibiotic _pdbx_reference_molecule.class_evidence_code ? _pdbx_reference_molecule.formula "C88 H98 Cl N9 O33" _pdbx_reference_molecule.formula_weight 1845.213 _pdbx_reference_molecule.chem_comp_id ? _pdbx_reference_molecule.release_status REL _pdbx_reference_molecule.replaces ? _pdbx_reference_molecule.replaced_by ? _pdbx_reference_molecule.compound_details "TEICOPLANIN IS A FAMILY OF TETRACYCLIC GLYCOPEPTIDE ANTIBIOTICS. THE SCAFFOLD IS A HEPTAPEPTIDE FURTHER GLYCOSYLATED BY THREE MONO SACCHARIDES: MANNOSE, N-ACETYLGLUCOSAMINE AND BETA-D-GLUCOSAMINE AND ONLY DIFFER BY THE SIDE CHAIN ATTACHED TO THE LATTER. TEICOPLANIN A2-2 HAS 8-METHYLNONANOIC ACID ATTACHED TO GLUCOSAMINE. HERE, TEICOPLANIN A2-2 WAS UNDER RADIATION DAMAGE, WHICH CAUSES THE LOSS OF ONE CHLORINE ATOM." _pdbx_reference_molecule.description ? _pdbx_reference_molecule.representative_PDB_id_code 3VFJ # loop_ _pdbx_reference_entity_list.prd_id _pdbx_reference_entity_list.ref_entity_id _pdbx_reference_entity_list.component_id _pdbx_reference_entity_list.type _pdbx_reference_entity_list.details PRD_000882 1 1 polymer "PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 7" PRD_000882 2 2 non-polymer GCS PRD_000882 3 3 non-polymer T55 PRD_000882 4 4 non-polymer NAG PRD_000882 5 5 non-polymer MAN # loop_ _pdbx_reference_entity_nonpoly.prd_id _pdbx_reference_entity_nonpoly.ref_entity_id _pdbx_reference_entity_nonpoly.name _pdbx_reference_entity_nonpoly.chem_comp_id _pdbx_reference_entity_nonpoly.details PRD_000882 2 D-GLUCOSAMINE GCS ? PRD_000882 3 "8-METHYLNONANOIC ACID" T55 ? PRD_000882 4 N-ACETYL-D-GLUCOSAMINE NAG ? PRD_000882 5 ALPHA-D-MANNOSE MAN ? # loop_ _pdbx_reference_entity_link.prd_id _pdbx_reference_entity_link.link_id _pdbx_reference_entity_link.link_class _pdbx_reference_entity_link.ref_entity_id_1 _pdbx_reference_entity_link.entity_seq_num_1 _pdbx_reference_entity_link.comp_id_1 _pdbx_reference_entity_link.atom_id_1 _pdbx_reference_entity_link.ref_entity_id_2 _pdbx_reference_entity_link.entity_seq_num_2 _pdbx_reference_entity_link.comp_id_2 _pdbx_reference_entity_link.atom_id_2 _pdbx_reference_entity_link.value_order _pdbx_reference_entity_link.component_1 _pdbx_reference_entity_link.component_2 _pdbx_reference_entity_link.details _pdbx_reference_entity_link.nonpoly_res_num_1 _pdbx_reference_entity_link.nonpoly_res_num_2 PRD_000882 1 PN 1 4 GHP O4 2 ? GCS C1 sing 1 2 ? ? ? PRD_000882 2 PN 1 6 OMX OC 4 ? NAG C1 sing 1 4 ? ? ? PRD_000882 3 PN 1 7 3FG OD1 5 ? MAN C1 sing 1 5 ? ? ? PRD_000882 4 NN 2 ? GCS N2 3 ? T55 C sing 2 3 ? ? ? # loop_ _pdbx_reference_entity_poly_link.prd_id _pdbx_reference_entity_poly_link.ref_entity_id _pdbx_reference_entity_poly_link.link_id _pdbx_reference_entity_poly_link.atom_id_1 _pdbx_reference_entity_poly_link.comp_id_1 _pdbx_reference_entity_poly_link.entity_seq_num_1 _pdbx_reference_entity_poly_link.atom_id_2 _pdbx_reference_entity_poly_link.comp_id_2 _pdbx_reference_entity_poly_link.entity_seq_num_2 _pdbx_reference_entity_poly_link.value_order _pdbx_reference_entity_poly_link.component_id _pdbx_reference_entity_poly_link.details _pdbx_reference_entity_poly_link.insert_code_1 _pdbx_reference_entity_poly_link.insert_code_2 PRD_000882 1 1 C GHP 1 N 3MY 2 sing 1 ? ? ? PRD_000882 1 2 C5 GHP 1 OD1 3FG 3 sing 1 ? ? ? PRD_000882 1 3 OBD 3MY 2 C3 GHP 4 sing 1 ? ? ? PRD_000882 1 4 C 3MY 2 N 3FG 3 sing 1 ? ? ? PRD_000882 1 5 C 3FG 3 N GHP 4 sing 1 ? ? ? PRD_000882 1 6 C GHP 4 N GHP 5 sing 1 ? ? ? PRD_000882 1 7 C5 GHP 4 OH OMX 6 sing 1 ? ? ? PRD_000882 1 8 C GHP 5 N OMX 6 sing 1 ? ? ? PRD_000882 1 9 C3 GHP 5 CG1 3FG 7 sing 1 ? ? ? PRD_000882 1 10 C OMX 6 N 3FG 7 sing 1 ? ? ? # _pdbx_reference_entity_poly.prd_id PRD_000882 _pdbx_reference_entity_poly.ref_entity_id 1 _pdbx_reference_entity_poly.db_code ? _pdbx_reference_entity_poly.db_name ? _pdbx_reference_entity_poly.type peptide-like # _pdbx_reference_entity_sequence.prd_id PRD_000882 _pdbx_reference_entity_sequence.ref_entity_id 1 _pdbx_reference_entity_sequence.type peptide-like _pdbx_reference_entity_sequence.NRP_flag N # loop_ _pdbx_reference_entity_poly_seq.prd_id _pdbx_reference_entity_poly_seq.ref_entity_id _pdbx_reference_entity_poly_seq.num _pdbx_reference_entity_poly_seq.mon_id _pdbx_reference_entity_poly_seq.parent_mon_id _pdbx_reference_entity_poly_seq.hetero _pdbx_reference_entity_poly_seq.observed PRD_000882 1 1 GHP ? N Y PRD_000882 1 2 3MY TYR N Y PRD_000882 1 3 3FG ? N Y PRD_000882 1 4 GHP ? N Y PRD_000882 1 5 GHP ? N Y PRD_000882 1 6 OMX TYR N Y PRD_000882 1 7 3FG ? N Y # _pdbx_reference_entity_src_nat.prd_id PRD_000882 _pdbx_reference_entity_src_nat.ref_entity_id 1 _pdbx_reference_entity_src_nat.ordinal 1 _pdbx_reference_entity_src_nat.taxid 1867 _pdbx_reference_entity_src_nat.organism_scientific "Actinoplanes teichomyceticus" _pdbx_reference_entity_src_nat.source ? _pdbx_reference_entity_src_nat.db_code ? _pdbx_reference_entity_src_nat.db_name ? _pdbx_reference_entity_src_nat.strain ? # loop_ _pdbx_prd_audit.prd_id _pdbx_prd_audit.date _pdbx_prd_audit.processing_site _pdbx_prd_audit.action_type PRD_000882 2012-08-27 RCSB "Create molecule" PRD_000882 2013-02-27 RCSB "Other modification" PRD_000882 2013-03-06 RCSB "Initial release" PRD_000882 2013-06-03 RCSB "Other modification" #