data_101D # _entry.id 101D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 101D pdb_0000101d 10.2210/pdb101d/pdb RCSB GDLB31 ? ? WWPDB D_1000170002 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 101D _pdbx_database_status.recvd_initial_deposition_date 1994-12-14 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Goodsell, D.S.' 1 'Kopka, M.L.' 2 'Dickerson, R.E.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Refinement of netropsin bound to DNA: bias and feedback in electron density map interpretation.' Biochemistry 34 4983 4993 1995 BICHAW US 0006-2960 0033 ? 7711020 10.1021/bi00015a009 1 'Binding of an Antitumor Drug to DNA. Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G' J.Mol.Biol. 183 553 563 1985 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Goodsell, D.S.' 1 ? primary 'Kopka, M.L.' 2 ? primary 'Dickerson, R.E.' 3 ? 1 'Kopka, M.L.' 4 ? 1 'Yoon, C.' 5 ? 1 'Goodsell, D.S.' 6 ? 1 'Pjura, P.' 7 ? 1 'Dickerson, R.E.' 8 ? # _cell.entry_id 101D _cell.length_a 24.270 _cell.length_b 39.620 _cell.length_c 63.570 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 101D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3') ; 3742.288 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn NETROPSIN 430.464 1 ? ? ? ? 4 water nat water 18.015 36 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(CBR)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 CBR n 1 10 DG n 1 11 DC n 1 12 DG n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 101D _struct_ref.pdbx_db_accession 101D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 101D A 1 ? 12 ? 101D 1 ? 12 ? 1 12 2 1 101D B 1 ? 12 ? 101D 13 ? 24 ? 13 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CBR 'DNA linking' n "5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 Br N3 O7 P' 386.093 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NT non-polymer . NETROPSIN ? 'C18 H26 N10 O3' 430.464 # _exptl.entry_id 101D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.00 _exptl_crystal.density_percent_sol 38.45 _exptl_crystal.description ? # _refine.entry_id 101D _refine.ls_number_reflns_obs 2430 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.250 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.163 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.252 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 37 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 556 _refine_hist.d_res_high 2.250 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it 4.282 6.000 ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it 4.990 6.000 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it 5.693 6.000 ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it 5.227 6.000 ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d 0.024 0.030 ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d 0.040 0.040 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d 0.026 0.040 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d 0.057 0.050 ? ? 'X-RAY DIFFRACTION' ? n_plane_restr 0.014 0.020 ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr 0.161 0.150 ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd 0.093 0.100 ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd 0.097 0.100 ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 101D _struct.title 'REFINEMENT OF NETROPSIN BOUND TO DNA: BIAS AND FEEDBACK IN ELECTRON DENSITY MAP INTERPRETATION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 101D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 8 "O3'" ? ? ? 1_555 A CBR 9 P ? ? A DT 8 A CBR 9 1_555 ? ? ? ? ? ? ? 1.624 ? ? covale2 covale both ? A CBR 9 "O3'" ? ? ? 1_555 A DG 10 P ? ? A CBR 9 A DG 10 1_555 ? ? ? ? ? ? ? 1.551 ? ? covale3 covale both ? B DT 8 "O3'" ? ? ? 1_555 B CBR 9 P ? ? B DT 20 B CBR 21 1_555 ? ? ? ? ? ? ? 1.578 ? ? covale4 covale both ? B CBR 9 "O3'" ? ? ? 1_555 B DG 10 P ? ? B CBR 21 B DG 22 1_555 ? ? ? ? ? ? ? 1.595 ? ? metalc1 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 61 1_555 ? ? ? ? ? ? ? 2.164 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 26 B HOH 60 1_555 ? ? ? ? ? ? ? 2.101 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 26 B HOH 62 1_555 ? ? ? ? ? ? ? 2.110 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B CBR 9 N3 ? ? A DG 4 B CBR 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B CBR 9 O2 ? ? A DG 4 B CBR 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B CBR 9 N4 ? ? A DG 4 B CBR 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A CBR 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A CBR 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A CBR 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A CBR 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A CBR 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A CBR 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B NT 25 ? 9 'BINDING SITE FOR RESIDUE NT B 25' AC2 Software A MG 26 ? 3 'BINDING SITE FOR RESIDUE MG A 26' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DA A 6 ? DA A 6 . ? 1_555 ? 2 AC1 9 DT A 7 ? DT A 7 . ? 1_555 ? 3 AC1 9 DT A 8 ? DT A 8 . ? 1_555 ? 4 AC1 9 DA B 5 ? DA B 17 . ? 1_555 ? 5 AC1 9 DA B 6 ? DA B 18 . ? 1_555 ? 6 AC1 9 DT B 7 ? DT B 19 . ? 1_555 ? 7 AC1 9 DT B 8 ? DT B 20 . ? 1_555 ? 8 AC1 9 CBR B 9 ? CBR B 21 . ? 1_555 ? 9 AC1 9 DG B 10 ? DG B 22 . ? 1_555 ? 10 AC2 3 HOH E . ? HOH A 61 . ? 1_555 ? 11 AC2 3 HOH F . ? HOH B 60 . ? 1_555 ? 12 AC2 3 HOH F . ? HOH B 62 . ? 1_555 ? # _database_PDB_matrix.entry_id 101D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 101D _atom_sites.fract_transf_matrix[1][1] 0.041203 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025240 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015731 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 CBR 9 9 9 CBR C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 CBR 9 21 21 CBR C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 26 26 MG MO3 A . D 3 NT 1 25 25 NT NT B . E 4 HOH 1 27 27 HOH HOH A . E 4 HOH 2 28 28 HOH HOH A . E 4 HOH 3 33 33 HOH HOH A . E 4 HOH 4 34 34 HOH HOH A . E 4 HOH 5 35 35 HOH HOH A . E 4 HOH 6 39 39 HOH HOH A . E 4 HOH 7 44 44 HOH HOH A . E 4 HOH 8 46 46 HOH HOH A . E 4 HOH 9 48 48 HOH HOH A . E 4 HOH 10 52 52 HOH HOH A . E 4 HOH 11 53 53 HOH HOH A . E 4 HOH 12 54 54 HOH HOH A . E 4 HOH 13 59 59 HOH HOH A . E 4 HOH 14 61 26 HOH MO3 A . F 4 HOH 1 29 29 HOH HOH B . F 4 HOH 2 30 30 HOH HOH B . F 4 HOH 3 31 31 HOH HOH B . F 4 HOH 4 32 32 HOH HOH B . F 4 HOH 5 36 36 HOH HOH B . F 4 HOH 6 37 37 HOH HOH B . F 4 HOH 7 38 38 HOH HOH B . F 4 HOH 8 40 40 HOH HOH B . F 4 HOH 9 41 41 HOH HOH B . F 4 HOH 10 42 42 HOH HOH B . F 4 HOH 11 43 43 HOH HOH B . F 4 HOH 12 45 45 HOH HOH B . F 4 HOH 13 47 47 HOH HOH B . F 4 HOH 14 49 49 HOH HOH B . F 4 HOH 15 50 50 HOH HOH B . F 4 HOH 16 51 51 HOH HOH B . F 4 HOH 17 55 55 HOH HOH B . F 4 HOH 18 56 56 HOH HOH B . F 4 HOH 19 57 57 HOH HOH B . F 4 HOH 20 58 58 HOH HOH B . F 4 HOH 21 60 26 HOH MO3 B . F 4 HOH 22 62 26 HOH MO3 B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CBR 9 A CBR 9 ? DC ? 2 B CBR 9 B CBR 21 ? DC ? # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MINOR GROOVE BINDER' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 61 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 60 ? 1_555 88.3 ? 2 O ? E HOH . ? A HOH 61 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 62 ? 1_555 76.9 ? 3 O ? F HOH . ? B HOH 60 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 62 ? 1_555 80.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1995-02-27 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_conn_type 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.value' 10 4 'Structure model' '_struct_conn.conn_type_id' 11 4 'Structure model' '_struct_conn.id' 12 4 'Structure model' '_struct_conn.pdbx_dist_value' 13 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 14 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 15 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 16 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 21 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 28 4 'Structure model' '_struct_conn_type.id' 29 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 1.449 1.518 -0.069 0.010 N 2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? 1.488 1.420 0.068 0.011 N 3 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? 1.375 1.446 -0.071 0.010 N 4 1 N7 A DG 2 ? ? C8 A DG 2 ? ? 1.267 1.305 -0.038 0.006 N 5 1 "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 1.451 1.518 -0.067 0.010 N 6 1 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 1.590 1.529 0.061 0.010 N 7 1 "C2'" A DA 6 ? ? "C1'" A DA 6 ? ? 1.428 1.518 -0.090 0.010 N 8 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? 1.487 1.420 0.067 0.011 N 9 1 "O4'" A DT 7 ? ? "C4'" A DT 7 ? ? 1.382 1.446 -0.064 0.010 N 10 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? 1.492 1.420 0.072 0.011 N 11 1 "O3'" A DT 8 ? ? "C3'" A DT 8 ? ? 1.381 1.419 -0.038 0.006 N 12 1 "C2'" A DC 11 ? ? "C1'" A DC 11 ? ? 1.449 1.518 -0.069 0.010 N 13 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? 1.503 1.420 0.083 0.011 N 14 1 "C5'" B DG 14 ? ? "C4'" B DG 14 ? ? 1.562 1.512 0.050 0.007 N 15 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? 1.488 1.420 0.068 0.011 N 16 1 "O3'" B DC 15 ? ? "C3'" B DC 15 ? ? 1.380 1.419 -0.039 0.006 N 17 1 N7 B DA 17 ? ? C8 B DA 17 ? ? 1.255 1.311 -0.056 0.007 N 18 1 "O3'" B DT 19 ? ? "C3'" B DT 19 ? ? 1.356 1.419 -0.063 0.006 N 19 1 "C2'" B DT 20 ? ? "C1'" B DT 20 ? ? 1.449 1.518 -0.069 0.010 N 20 1 "O4'" B DG 24 ? ? "C4'" B DG 24 ? ? 1.375 1.446 -0.071 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? "O4'" A DC 1 ? ? 119.48 109.80 9.68 1.10 N 2 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 124.02 119.90 4.12 0.50 N 3 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 116.72 121.90 -5.18 0.40 N 4 1 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 127.60 120.20 7.40 0.70 N 5 1 OP1 A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 108.98 119.60 -10.62 1.50 N 6 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 103.90 109.40 -5.50 0.80 N 7 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DC 3 ? ? 138.86 119.70 19.16 1.20 Y 8 1 N3 A DC 3 ? ? C4 A DC 3 ? ? C5 A DC 3 ? ? 119.35 121.90 -2.55 0.40 N 9 1 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? "O4'" A DG 4 ? ? 122.05 109.80 12.25 1.10 N 10 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 115.09 108.30 6.79 0.30 N 11 1 C6 A DG 4 ? ? N1 A DG 4 ? ? C2 A DG 4 ? ? 120.37 125.10 -4.73 0.60 N 12 1 N1 A DG 4 ? ? C2 A DG 4 ? ? N3 A DG 4 ? ? 128.56 123.90 4.66 0.60 N 13 1 C5 A DG 4 ? ? C6 A DG 4 ? ? N1 A DG 4 ? ? 115.37 111.50 3.87 0.50 N 14 1 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 114.62 119.90 -5.28 0.70 N 15 1 C5 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 124.91 128.60 -3.69 0.60 N 16 1 C6 A DA 5 ? ? N1 A DA 5 ? ? C2 A DA 5 ? ? 122.60 118.60 4.00 0.60 N 17 1 N1 A DA 5 ? ? C2 A DA 5 ? ? N3 A DA 5 ? ? 126.15 129.30 -3.15 0.50 N 18 1 "C3'" A DA 5 ? ? "O3'" A DA 5 ? ? P A DA 6 ? ? 128.38 119.70 8.68 1.20 Y 19 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 102.48 108.00 -5.52 0.70 N 20 1 C6 A DA 6 ? ? N1 A DA 6 ? ? C2 A DA 6 ? ? 122.56 118.60 3.96 0.60 N 21 1 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 114.65 117.70 -3.05 0.50 N 22 1 "C3'" A DA 6 ? ? "O3'" A DA 6 ? ? P A DT 7 ? ? 129.79 119.70 10.09 1.20 Y 23 1 OP1 A DT 7 ? ? P A DT 7 ? ? OP2 A DT 7 ? ? 106.18 119.60 -13.42 1.50 N 24 1 "O5'" A DT 7 ? ? P A DT 7 ? ? OP2 A DT 7 ? ? 119.22 110.70 8.52 1.20 N 25 1 "O5'" A DT 7 ? ? "C5'" A DT 7 ? ? "C4'" A DT 7 ? ? 101.75 109.40 -7.65 0.80 N 26 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? "C2'" A DT 7 ? ? 99.97 105.90 -5.93 0.80 N 27 1 C2 A DT 7 ? ? N3 A DT 7 ? ? C4 A DT 7 ? ? 120.60 127.20 -6.60 0.60 N 28 1 N3 A DT 7 ? ? C4 A DT 7 ? ? C5 A DT 7 ? ? 120.83 115.20 5.63 0.60 N 29 1 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 134.41 119.70 14.71 1.20 Y 30 1 N1 A DT 8 ? ? C2 A DT 8 ? ? N3 A DT 8 ? ? 118.54 114.60 3.94 0.60 N 31 1 C2 A DT 8 ? ? N3 A DT 8 ? ? C4 A DT 8 ? ? 122.60 127.20 -4.60 0.60 N 32 1 N3 A DT 8 ? ? C4 A DT 8 ? ? C5 A DT 8 ? ? 118.82 115.20 3.62 0.60 N 33 1 N3 A DT 8 ? ? C4 A DT 8 ? ? O4 A DT 8 ? ? 116.08 119.90 -3.82 0.60 N 34 1 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A CBR 9 ? ? 143.72 119.70 24.02 1.20 Y 35 1 "C3'" A CBR 9 ? ? "O3'" A CBR 9 ? ? P A DG 10 ? ? 135.33 119.70 15.63 1.20 Y 36 1 OP1 A DG 10 ? ? P A DG 10 ? ? OP2 A DG 10 ? ? 108.87 119.60 -10.73 1.50 N 37 1 P A DG 10 ? ? "O5'" A DG 10 ? ? "C5'" A DG 10 ? ? 139.23 120.90 18.33 1.60 N 38 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.05 108.30 2.75 0.30 N 39 1 C6 A DG 10 ? ? N1 A DG 10 ? ? C2 A DG 10 ? ? 120.34 125.10 -4.76 0.60 N 40 1 N1 A DG 10 ? ? C2 A DG 10 ? ? N3 A DG 10 ? ? 127.91 123.90 4.01 0.60 N 41 1 C5 A DG 10 ? ? C6 A DG 10 ? ? N1 A DG 10 ? ? 115.39 111.50 3.89 0.50 N 42 1 "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? P A DC 11 ? ? 131.76 119.70 12.06 1.20 Y 43 1 OP1 A DC 11 ? ? P A DC 11 ? ? OP2 A DC 11 ? ? 109.61 119.60 -9.99 1.50 N 44 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 103.15 108.00 -4.85 0.70 N 45 1 OP1 A DG 12 ? ? P A DG 12 ? ? OP2 A DG 12 ? ? 106.58 119.60 -13.02 1.50 N 46 1 "O5'" A DG 12 ? ? "C5'" A DG 12 ? ? "C4'" A DG 12 ? ? 101.22 109.40 -8.18 0.80 N 47 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? "C2'" A DG 12 ? ? 110.51 106.80 3.71 0.50 N 48 1 C2 A DG 12 ? ? N3 A DG 12 ? ? C4 A DG 12 ? ? 115.23 111.90 3.33 0.50 N 49 1 "O5'" B DC 13 ? ? "C5'" B DC 13 ? ? "C4'" B DC 13 ? ? 104.48 109.40 -4.92 0.80 N 50 1 N3 B DC 13 ? ? C4 B DC 13 ? ? C5 B DC 13 ? ? 119.44 121.90 -2.46 0.40 N 51 1 N1 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 122.71 118.90 3.81 0.60 N 52 1 "O5'" B DG 14 ? ? "C5'" B DG 14 ? ? "C4'" B DG 14 ? ? 103.14 109.40 -6.26 0.80 N 53 1 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? 110.28 106.00 4.28 0.60 N 54 1 "C1'" B DG 14 ? ? "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? 104.02 110.10 -6.08 1.00 N 55 1 "C3'" B DG 14 ? ? "O3'" B DG 14 ? ? P B DC 15 ? ? 133.59 119.70 13.89 1.20 Y 56 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 110.22 108.30 1.92 0.30 N 57 1 "C3'" B DC 15 ? ? "O3'" B DC 15 ? ? P B DG 16 ? ? 141.58 119.70 21.88 1.20 Y 58 1 "C3'" B DG 16 ? ? "C2'" B DG 16 ? ? "C1'" B DG 16 ? ? 96.85 102.40 -5.55 0.80 N 59 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.00 108.30 2.70 0.30 N 60 1 C6 B DG 16 ? ? N1 B DG 16 ? ? C2 B DG 16 ? ? 120.16 125.10 -4.94 0.60 N 61 1 C5 B DG 16 ? ? C6 B DG 16 ? ? N1 B DG 16 ? ? 115.49 111.50 3.99 0.50 N 62 1 OP1 B DA 17 ? ? P B DA 17 ? ? OP2 B DA 17 ? ? 108.24 119.60 -11.36 1.50 N 63 1 "O5'" B DA 17 ? ? P B DA 17 ? ? OP2 B DA 17 ? ? 122.68 110.70 11.98 1.20 N 64 1 C6 B DA 17 ? ? N1 B DA 17 ? ? C2 B DA 17 ? ? 125.45 118.60 6.85 0.60 N 65 1 N1 B DA 17 ? ? C2 B DA 17 ? ? N3 B DA 17 ? ? 123.75 129.30 -5.55 0.50 N 66 1 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 113.62 117.70 -4.08 0.50 N 67 1 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 122.53 118.60 3.93 0.60 N 68 1 "O5'" B DA 18 ? ? P B DA 18 ? ? OP1 B DA 18 ? ? 120.76 110.70 10.06 1.20 N 69 1 "C5'" B DA 18 ? ? "C4'" B DA 18 ? ? "C3'" B DA 18 ? ? 127.76 115.70 12.06 1.20 N 70 1 C6 B DA 18 ? ? N1 B DA 18 ? ? C2 B DA 18 ? ? 123.80 118.60 5.20 0.60 N 71 1 N1 B DA 18 ? ? C2 B DA 18 ? ? N3 B DA 18 ? ? 123.47 129.30 -5.83 0.50 N 72 1 C5 B DA 18 ? ? C6 B DA 18 ? ? N1 B DA 18 ? ? 114.09 117.70 -3.61 0.50 N 73 1 N1 B DA 18 ? ? C6 B DA 18 ? ? N6 B DA 18 ? ? 126.04 118.60 7.44 0.60 N 74 1 "O5'" B DT 19 ? ? "C5'" B DT 19 ? ? "C4'" B DT 19 ? ? 103.70 109.40 -5.70 0.80 N 75 1 "C1'" B DT 19 ? ? "O4'" B DT 19 ? ? "C4'" B DT 19 ? ? 102.31 110.10 -7.79 1.00 N 76 1 C2 B DT 19 ? ? N3 B DT 19 ? ? C4 B DT 19 ? ? 122.67 127.20 -4.53 0.60 N 77 1 N3 B DT 19 ? ? C4 B DT 19 ? ? O4 B DT 19 ? ? 113.72 119.90 -6.18 0.60 N 78 1 "C3'" B DT 19 ? ? "O3'" B DT 19 ? ? P B DT 20 ? ? 141.98 119.70 22.28 1.20 Y 79 1 "O3'" B DT 19 ? ? P B DT 20 ? ? "O5'" B DT 20 ? ? 115.71 104.00 11.71 1.90 Y 80 1 "C1'" B DT 20 ? ? "O4'" B DT 20 ? ? "C4'" B DT 20 ? ? 103.78 110.10 -6.32 1.00 N 81 1 C2 B DT 20 ? ? N3 B DT 20 ? ? C4 B DT 20 ? ? 122.28 127.20 -4.92 0.60 N 82 1 N3 B DT 20 ? ? C4 B DT 20 ? ? C5 B DT 20 ? ? 120.37 115.20 5.17 0.60 N 83 1 N3 B DT 20 ? ? C4 B DT 20 ? ? O4 B DT 20 ? ? 113.34 119.90 -6.56 0.60 N 84 1 "C3'" B DT 20 ? ? "O3'" B DT 20 ? ? P B CBR 21 ? ? 130.17 119.70 10.47 1.20 Y 85 1 "C3'" B CBR 21 ? ? "O3'" B CBR 21 ? ? P B DG 22 ? ? 127.11 119.70 7.41 1.20 Y 86 1 "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? "C1'" B DG 22 ? ? 94.33 102.40 -8.07 0.80 N 87 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 112.83 108.30 4.53 0.30 N 88 1 N3 B DG 22 ? ? C2 B DG 22 ? ? N2 B DG 22 ? ? 115.01 119.90 -4.89 0.70 N 89 1 C5 B DG 22 ? ? C6 B DG 22 ? ? O6 B DG 22 ? ? 124.19 128.60 -4.41 0.60 N 90 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 101.80 108.00 -6.20 0.70 N 91 1 C2 B DC 23 ? ? N3 B DC 23 ? ? C4 B DC 23 ? ? 124.31 119.90 4.41 0.50 N 92 1 N3 B DC 23 ? ? C4 B DC 23 ? ? C5 B DC 23 ? ? 117.65 121.90 -4.25 0.40 N 93 1 P B DG 24 ? ? "O5'" B DG 24 ? ? "C5'" B DG 24 ? ? 137.28 120.90 16.38 1.60 N 94 1 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 103.32 108.00 -4.68 0.70 N 95 1 N1 B DG 24 ? ? C2 B DG 24 ? ? N2 B DG 24 ? ? 110.26 116.20 -5.94 0.90 N 96 1 N3 B DG 24 ? ? C2 B DG 24 ? ? N2 B DG 24 ? ? 124.16 119.90 4.26 0.70 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CBR BR BR N N 1 CBR P P N N 2 CBR OP1 O N N 3 CBR OP2 O N N 4 CBR "O5'" O N N 5 CBR N1 N N N 6 CBR C6 C N N 7 CBR C2 C N N 8 CBR O2 O N N 9 CBR N3 N N N 10 CBR C4 C N N 11 CBR N4 N N N 12 CBR C5 C N N 13 CBR "C2'" C N N 14 CBR "C5'" C N N 15 CBR "C4'" C N R 16 CBR "O4'" O N N 17 CBR "C1'" C N R 18 CBR "C3'" C N S 19 CBR "O3'" O N N 20 CBR OP3 O N N 21 CBR HOP2 H N N 22 CBR H6 H N N 23 CBR H41 H N N 24 CBR H42 H N N 25 CBR "H2'" H N N 26 CBR "H2''" H N N 27 CBR "H5'" H N N 28 CBR "H5''" H N N 29 CBR "H4'" H N N 30 CBR "H1'" H N N 31 CBR "H3'" H N N 32 CBR "HO3'" H N N 33 CBR HOP3 H N N 34 DA OP3 O N N 35 DA P P N N 36 DA OP1 O N N 37 DA OP2 O N N 38 DA "O5'" O N N 39 DA "C5'" C N N 40 DA "C4'" C N R 41 DA "O4'" O N N 42 DA "C3'" C N S 43 DA "O3'" O N N 44 DA "C2'" C N N 45 DA "C1'" C N R 46 DA N9 N Y N 47 DA C8 C Y N 48 DA N7 N Y N 49 DA C5 C Y N 50 DA C6 C Y N 51 DA N6 N N N 52 DA N1 N Y N 53 DA C2 C Y N 54 DA N3 N Y N 55 DA C4 C Y N 56 DA HOP3 H N N 57 DA HOP2 H N N 58 DA "H5'" H N N 59 DA "H5''" H N N 60 DA "H4'" H N N 61 DA "H3'" H N N 62 DA "HO3'" H N N 63 DA "H2'" H N N 64 DA "H2''" H N N 65 DA "H1'" H N N 66 DA H8 H N N 67 DA H61 H N N 68 DA H62 H N N 69 DA H2 H N N 70 DC OP3 O N N 71 DC P P N N 72 DC OP1 O N N 73 DC OP2 O N N 74 DC "O5'" O N N 75 DC "C5'" C N N 76 DC "C4'" C N R 77 DC "O4'" O N N 78 DC "C3'" C N S 79 DC "O3'" O N N 80 DC "C2'" C N N 81 DC "C1'" C N R 82 DC N1 N N N 83 DC C2 C N N 84 DC O2 O N N 85 DC N3 N N N 86 DC C4 C N N 87 DC N4 N N N 88 DC C5 C N N 89 DC C6 C N N 90 DC HOP3 H N N 91 DC HOP2 H N N 92 DC "H5'" H N N 93 DC "H5''" H N N 94 DC "H4'" H N N 95 DC "H3'" H N N 96 DC "HO3'" H N N 97 DC "H2'" H N N 98 DC "H2''" H N N 99 DC "H1'" H N N 100 DC H41 H N N 101 DC H42 H N N 102 DC H5 H N N 103 DC H6 H N N 104 DG OP3 O N N 105 DG P P N N 106 DG OP1 O N N 107 DG OP2 O N N 108 DG "O5'" O N N 109 DG "C5'" C N N 110 DG "C4'" C N R 111 DG "O4'" O N N 112 DG "C3'" C N S 113 DG "O3'" O N N 114 DG "C2'" C N N 115 DG "C1'" C N R 116 DG N9 N Y N 117 DG C8 C Y N 118 DG N7 N Y N 119 DG C5 C Y N 120 DG C6 C N N 121 DG O6 O N N 122 DG N1 N N N 123 DG C2 C N N 124 DG N2 N N N 125 DG N3 N N N 126 DG C4 C Y N 127 DG HOP3 H N N 128 DG HOP2 H N N 129 DG "H5'" H N N 130 DG "H5''" H N N 131 DG "H4'" H N N 132 DG "H3'" H N N 133 DG "HO3'" H N N 134 DG "H2'" H N N 135 DG "H2''" H N N 136 DG "H1'" H N N 137 DG H8 H N N 138 DG H1 H N N 139 DG H21 H N N 140 DG H22 H N N 141 DT OP3 O N N 142 DT P P N N 143 DT OP1 O N N 144 DT OP2 O N N 145 DT "O5'" O N N 146 DT "C5'" C N N 147 DT "C4'" C N R 148 DT "O4'" O N N 149 DT "C3'" C N S 150 DT "O3'" O N N 151 DT "C2'" C N N 152 DT "C1'" C N R 153 DT N1 N N N 154 DT C2 C N N 155 DT O2 O N N 156 DT N3 N N N 157 DT C4 C N N 158 DT O4 O N N 159 DT C5 C N N 160 DT C7 C N N 161 DT C6 C N N 162 DT HOP3 H N N 163 DT HOP2 H N N 164 DT "H5'" H N N 165 DT "H5''" H N N 166 DT "H4'" H N N 167 DT "H3'" H N N 168 DT "HO3'" H N N 169 DT "H2'" H N N 170 DT "H2''" H N N 171 DT "H1'" H N N 172 DT H3 H N N 173 DT H71 H N N 174 DT H72 H N N 175 DT H73 H N N 176 DT H6 H N N 177 HOH O O N N 178 HOH H1 H N N 179 HOH H2 H N N 180 MG MG MG N N 181 NT C1 C N N 182 NT N1 N N N 183 NT N2 N N N 184 NT N3 N N N 185 NT C2 C N N 186 NT C3 C N N 187 NT O1 O N N 188 NT N4 N N N 189 NT C4 C Y N 190 NT C5 C Y N 191 NT C6 C Y N 192 NT N5 N Y N 193 NT C8 C N N 194 NT C7 C Y N 195 NT C9 C N N 196 NT O2 O N N 197 NT N6 N N N 198 NT C10 C Y N 199 NT C11 C Y N 200 NT C12 C Y N 201 NT N7 N Y N 202 NT C14 C N N 203 NT C13 C Y N 204 NT C15 C N N 205 NT O3 O N N 206 NT N8 N N N 207 NT C16 C N N 208 NT C17 C N N 209 NT C18 C N N 210 NT N9 N N N 211 NT N10 N N N 212 NT HN1 H N N 213 NT HN21 H N N 214 NT HN22 H N N 215 NT HN3 H N N 216 NT H21 H N N 217 NT H22 H N N 218 NT HN4 H N N 219 NT H5 H N N 220 NT H81 H N N 221 NT H82 H N N 222 NT H83 H N N 223 NT H7 H N N 224 NT HN6 H N N 225 NT H11 H N N 226 NT H141 H N N 227 NT H142 H N N 228 NT H143 H N N 229 NT H13 H N N 230 NT HN8 H N N 231 NT H161 H N N 232 NT H162 H N N 233 NT H171 H N N 234 NT H172 H N N 235 NT HN9 H N N 236 NT HN01 H N N 237 NT HN02 H N N 238 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CBR BR C5 sing N N 1 CBR P OP1 doub N N 2 CBR P OP2 sing N N 3 CBR P "O5'" sing N N 4 CBR P OP3 sing N N 5 CBR OP2 HOP2 sing N N 6 CBR "O5'" "C5'" sing N N 7 CBR N1 C6 sing N N 8 CBR N1 C2 sing N N 9 CBR N1 "C1'" sing N N 10 CBR C6 C5 doub N N 11 CBR C6 H6 sing N N 12 CBR C2 O2 doub N N 13 CBR C2 N3 sing N N 14 CBR N3 C4 doub N N 15 CBR C4 N4 sing N N 16 CBR C4 C5 sing N N 17 CBR N4 H41 sing N N 18 CBR N4 H42 sing N N 19 CBR "C2'" "C1'" sing N N 20 CBR "C2'" "C3'" sing N N 21 CBR "C2'" "H2'" sing N N 22 CBR "C2'" "H2''" sing N N 23 CBR "C5'" "C4'" sing N N 24 CBR "C5'" "H5'" sing N N 25 CBR "C5'" "H5''" sing N N 26 CBR "C4'" "O4'" sing N N 27 CBR "C4'" "C3'" sing N N 28 CBR "C4'" "H4'" sing N N 29 CBR "O4'" "C1'" sing N N 30 CBR "C1'" "H1'" sing N N 31 CBR "C3'" "O3'" sing N N 32 CBR "C3'" "H3'" sing N N 33 CBR "O3'" "HO3'" sing N N 34 CBR OP3 HOP3 sing N N 35 DA OP3 P sing N N 36 DA OP3 HOP3 sing N N 37 DA P OP1 doub N N 38 DA P OP2 sing N N 39 DA P "O5'" sing N N 40 DA OP2 HOP2 sing N N 41 DA "O5'" "C5'" sing N N 42 DA "C5'" "C4'" sing N N 43 DA "C5'" "H5'" sing N N 44 DA "C5'" "H5''" sing N N 45 DA "C4'" "O4'" sing N N 46 DA "C4'" "C3'" sing N N 47 DA "C4'" "H4'" sing N N 48 DA "O4'" "C1'" sing N N 49 DA "C3'" "O3'" sing N N 50 DA "C3'" "C2'" sing N N 51 DA "C3'" "H3'" sing N N 52 DA "O3'" "HO3'" sing N N 53 DA "C2'" "C1'" sing N N 54 DA "C2'" "H2'" sing N N 55 DA "C2'" "H2''" sing N N 56 DA "C1'" N9 sing N N 57 DA "C1'" "H1'" sing N N 58 DA N9 C8 sing Y N 59 DA N9 C4 sing Y N 60 DA C8 N7 doub Y N 61 DA C8 H8 sing N N 62 DA N7 C5 sing Y N 63 DA C5 C6 sing Y N 64 DA C5 C4 doub Y N 65 DA C6 N6 sing N N 66 DA C6 N1 doub Y N 67 DA N6 H61 sing N N 68 DA N6 H62 sing N N 69 DA N1 C2 sing Y N 70 DA C2 N3 doub Y N 71 DA C2 H2 sing N N 72 DA N3 C4 sing Y N 73 DC OP3 P sing N N 74 DC OP3 HOP3 sing N N 75 DC P OP1 doub N N 76 DC P OP2 sing N N 77 DC P "O5'" sing N N 78 DC OP2 HOP2 sing N N 79 DC "O5'" "C5'" sing N N 80 DC "C5'" "C4'" sing N N 81 DC "C5'" "H5'" sing N N 82 DC "C5'" "H5''" sing N N 83 DC "C4'" "O4'" sing N N 84 DC "C4'" "C3'" sing N N 85 DC "C4'" "H4'" sing N N 86 DC "O4'" "C1'" sing N N 87 DC "C3'" "O3'" sing N N 88 DC "C3'" "C2'" sing N N 89 DC "C3'" "H3'" sing N N 90 DC "O3'" "HO3'" sing N N 91 DC "C2'" "C1'" sing N N 92 DC "C2'" "H2'" sing N N 93 DC "C2'" "H2''" sing N N 94 DC "C1'" N1 sing N N 95 DC "C1'" "H1'" sing N N 96 DC N1 C2 sing N N 97 DC N1 C6 sing N N 98 DC C2 O2 doub N N 99 DC C2 N3 sing N N 100 DC N3 C4 doub N N 101 DC C4 N4 sing N N 102 DC C4 C5 sing N N 103 DC N4 H41 sing N N 104 DC N4 H42 sing N N 105 DC C5 C6 doub N N 106 DC C5 H5 sing N N 107 DC C6 H6 sing N N 108 DG OP3 P sing N N 109 DG OP3 HOP3 sing N N 110 DG P OP1 doub N N 111 DG P OP2 sing N N 112 DG P "O5'" sing N N 113 DG OP2 HOP2 sing N N 114 DG "O5'" "C5'" sing N N 115 DG "C5'" "C4'" sing N N 116 DG "C5'" "H5'" sing N N 117 DG "C5'" "H5''" sing N N 118 DG "C4'" "O4'" sing N N 119 DG "C4'" "C3'" sing N N 120 DG "C4'" "H4'" sing N N 121 DG "O4'" "C1'" sing N N 122 DG "C3'" "O3'" sing N N 123 DG "C3'" "C2'" sing N N 124 DG "C3'" "H3'" sing N N 125 DG "O3'" "HO3'" sing N N 126 DG "C2'" "C1'" sing N N 127 DG "C2'" "H2'" sing N N 128 DG "C2'" "H2''" sing N N 129 DG "C1'" N9 sing N N 130 DG "C1'" "H1'" sing N N 131 DG N9 C8 sing Y N 132 DG N9 C4 sing Y N 133 DG C8 N7 doub Y N 134 DG C8 H8 sing N N 135 DG N7 C5 sing Y N 136 DG C5 C6 sing N N 137 DG C5 C4 doub Y N 138 DG C6 O6 doub N N 139 DG C6 N1 sing N N 140 DG N1 C2 sing N N 141 DG N1 H1 sing N N 142 DG C2 N2 sing N N 143 DG C2 N3 doub N N 144 DG N2 H21 sing N N 145 DG N2 H22 sing N N 146 DG N3 C4 sing N N 147 DT OP3 P sing N N 148 DT OP3 HOP3 sing N N 149 DT P OP1 doub N N 150 DT P OP2 sing N N 151 DT P "O5'" sing N N 152 DT OP2 HOP2 sing N N 153 DT "O5'" "C5'" sing N N 154 DT "C5'" "C4'" sing N N 155 DT "C5'" "H5'" sing N N 156 DT "C5'" "H5''" sing N N 157 DT "C4'" "O4'" sing N N 158 DT "C4'" "C3'" sing N N 159 DT "C4'" "H4'" sing N N 160 DT "O4'" "C1'" sing N N 161 DT "C3'" "O3'" sing N N 162 DT "C3'" "C2'" sing N N 163 DT "C3'" "H3'" sing N N 164 DT "O3'" "HO3'" sing N N 165 DT "C2'" "C1'" sing N N 166 DT "C2'" "H2'" sing N N 167 DT "C2'" "H2''" sing N N 168 DT "C1'" N1 sing N N 169 DT "C1'" "H1'" sing N N 170 DT N1 C2 sing N N 171 DT N1 C6 sing N N 172 DT C2 O2 doub N N 173 DT C2 N3 sing N N 174 DT N3 C4 sing N N 175 DT N3 H3 sing N N 176 DT C4 O4 doub N N 177 DT C4 C5 sing N N 178 DT C5 C7 sing N N 179 DT C5 C6 doub N N 180 DT C7 H71 sing N N 181 DT C7 H72 sing N N 182 DT C7 H73 sing N N 183 DT C6 H6 sing N N 184 HOH O H1 sing N N 185 HOH O H2 sing N N 186 NT C1 N1 doub N N 187 NT C1 N2 sing N N 188 NT C1 N3 sing N N 189 NT N1 HN1 sing N N 190 NT N2 HN21 sing N N 191 NT N2 HN22 sing N N 192 NT N3 C2 sing N N 193 NT N3 HN3 sing N N 194 NT C2 C3 sing N N 195 NT C2 H21 sing N N 196 NT C2 H22 sing N N 197 NT C3 O1 doub N N 198 NT C3 N4 sing N N 199 NT N4 C4 sing N N 200 NT N4 HN4 sing N N 201 NT C4 C5 sing Y N 202 NT C4 C7 doub Y N 203 NT C5 C6 doub Y N 204 NT C5 H5 sing N N 205 NT C6 N5 sing Y N 206 NT C6 C9 sing N N 207 NT N5 C8 sing N N 208 NT N5 C7 sing Y N 209 NT C8 H81 sing N N 210 NT C8 H82 sing N N 211 NT C8 H83 sing N N 212 NT C7 H7 sing N N 213 NT C9 O2 doub N N 214 NT C9 N6 sing N N 215 NT N6 C10 sing N N 216 NT N6 HN6 sing N N 217 NT C10 C11 sing Y N 218 NT C10 C13 doub Y N 219 NT C11 C12 doub Y N 220 NT C11 H11 sing N N 221 NT C12 N7 sing Y N 222 NT C12 C15 sing N N 223 NT N7 C14 sing N N 224 NT N7 C13 sing Y N 225 NT C14 H141 sing N N 226 NT C14 H142 sing N N 227 NT C14 H143 sing N N 228 NT C13 H13 sing N N 229 NT C15 O3 doub N N 230 NT C15 N8 sing N N 231 NT N8 C16 sing N N 232 NT N8 HN8 sing N N 233 NT C16 C17 sing N N 234 NT C16 H161 sing N N 235 NT C16 H162 sing N N 236 NT C17 C18 sing N N 237 NT C17 H171 sing N N 238 NT C17 H172 sing N N 239 NT C18 N9 doub N N 240 NT C18 N10 sing N N 241 NT N9 HN9 sing N N 242 NT N10 HN01 sing N N 243 NT N10 HN02 sing N N 244 # _ndb_struct_conf_na.entry_id 101D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.147 -0.208 -0.114 2.891 -17.827 -0.588 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.027 -0.267 0.219 -3.485 -15.195 -3.444 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.096 -0.177 0.286 -4.972 -6.435 -0.364 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B CBR 9 1_555 -0.217 0.056 0.018 9.060 -7.744 1.060 4 A_DG4:CBR21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.430 -0.075 -0.317 6.129 -20.556 7.183 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 -0.042 -0.078 0.219 3.511 -18.034 1.086 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 0.297 -0.067 -0.043 0.306 -20.982 4.024 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.239 -0.312 0.405 -14.255 -21.443 7.034 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A CBR 9 1_555 B DG 4 1_555 0.246 -0.354 -0.171 -9.615 -11.260 2.726 9 A_CBR9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.226 -0.252 0.029 6.362 -2.898 -0.785 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.749 -0.370 -0.044 9.834 -21.915 -2.711 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 0.385 -0.273 -0.668 -6.288 10.370 -7.468 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.183 0.304 3.615 -3.280 8.830 33.016 -1.039 -0.268 3.577 15.156 5.631 34.297 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.953 0.420 3.312 2.698 -9.673 41.697 1.548 -1.034 3.195 -13.357 -3.726 42.837 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B CBR 9 1_555 -0.097 0.731 3.187 6.284 2.081 27.711 1.019 1.606 3.134 4.267 -12.889 28.476 3 AA_DC3DG4:CBR21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B CBR 9 1_555 A DA 5 1_555 B DT 8 1_555 0.072 0.168 3.290 1.938 5.455 42.418 -0.320 0.097 3.286 7.497 -2.663 42.793 4 AA_DG4DA5:DT20CBR21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 -0.375 -0.181 3.248 -7.525 5.814 32.821 -1.233 -0.556 3.177 10.030 12.981 34.135 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 -0.205 -0.604 3.304 0.855 -1.629 33.104 -0.782 0.504 3.323 -2.856 -1.500 33.154 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 0.275 0.044 3.581 0.973 1.878 36.741 -0.210 -0.290 3.584 2.976 -1.542 36.800 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A CBR 9 1_555 B DG 4 1_555 0.217 0.648 3.269 6.578 0.879 41.253 0.816 0.391 3.276 1.237 -9.264 41.760 8 AA_DT8CBR9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A CBR 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 -0.017 1.216 3.089 -5.850 5.641 26.024 1.192 -1.404 3.204 12.155 12.606 27.242 9 AA_CBR9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -0.565 1.027 3.282 -2.375 -10.675 46.191 2.121 0.515 3.011 -13.387 2.978 47.399 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 0.449 0.791 4.200 5.297 -8.775 37.464 2.551 0.145 3.948 -13.358 -8.064 38.792 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 NETROPSIN NT 4 water HOH #