HEADER DNA 22-DEC-94 105D TITLE SOLUTION STRUCTURES OF THE I-MOTIF TETRAMERS OF D(TCC), D(5MCCT) AND TITLE 2 D(T5MCC). NOVEL NOE CONNECTIONS BETWEEN AMINO PROTONS AND SUGAR TITLE 3 PROTONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*TP*CP*C)-3'); COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS DNA EXPDTA SOLUTION NMR NUMMDL 8 AUTHOR J.-L.LEROY,M.GUERON REVDAT 5 16-FEB-22 105D 1 REMARK REVDAT 4 07-APR-09 105D 1 REMARK REVDAT 3 24-FEB-09 105D 1 VERSN REVDAT 2 01-APR-03 105D 1 JRNL REVDAT 1 07-FEB-95 105D 0 JRNL AUTH J.L.LEROY,M.GUERON JRNL TITL SOLUTION STRUCTURES OF THE I-MOTIF TETRAMERS OF D(TCC), JRNL TITL 2 D(5METHYLCCT) AND D(T5METHYLCC): NOVEL NOE CONNECTIONS JRNL TITL 3 BETWEEN AMINO PROTONS AND SUGAR PROTONS. JRNL REF STRUCTURE V. 3 101 1995 JRNL REFN ISSN 0969-2126 JRNL PMID 7743125 JRNL DOI 10.1016/S0969-2126(01)00138-1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE IS FORMED OF FOUR REMARK 3 EQUIVALENT TCC STRANDS DESIGNATED A, B, C, D. STRANDS A AND C, REMARK 3 CONNECTED BY TWO HEMI-PROTONATED BASE PAIRS (C2.C2+ AND C3.C3+), REMARK 3 FORM A PARALLEL-STRANDED DUPLEX. THE RELATION BETWEEN STRANDS B REMARK 3 AND D IS THE SAME AS THAT BETWEEN STRANDS A AND C. THE STRANDS REMARK 3 OF EACH DUPLEX ARE RELATED BY A LONGITUDINAL TWO-FOLD SYMMETRY REMARK 3 AXIS. THE DUPLEXES HAVE THE SAME LONGITUDINAL AXIS, AND THEY ARE REMARK 3 ANTI-PARALLEL. THEIR HEMI-PROTONATED C.C+ BASE PAIRS ARE REMARK 3 INTERCALATED FACE-TO-FACE. THE DUPLEXES CAN BE TRANSFORMED INTO REMARK 3 ONE ANOTHER BY A 180 DEGREE ROTATION AROUND A TWO-FOLD AXIS REMARK 3 PERPENDICULAR TO THE LONGITUDINAL AXIS, AND CONSEQUENTLY AROUND REMARK 3 A THIRD AXIS PERPENDICULAR TO THE FIRST TWO. THE H3 IMINO REMARK 3 PROTONS OF THE HEMI-PROTONATED C.C+ PAIRS WERE NOT INCORPORATED REMARK 3 IN THE COMPUTATIONS. REMARK 4 REMARK 4 105D COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170013. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 8 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DT A 1 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 DC A 2 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 DC A 3 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 DT B 4 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 DT B 4 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES REMARK 500 1 DC B 5 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 1 DC B 6 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 1 DT C 7 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 DC C 8 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 1 DC C 9 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 1 DT D 10 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 1 DC D 11 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 DC D 12 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 2 DT A 1 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 2 DC A 2 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 DC A 3 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 2 DT B 4 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 2 DC B 5 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 DC B 6 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 2 DT C 7 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 2 DC C 8 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 2 DC C 9 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 2 DT D 10 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 2 DC D 11 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 DC D 12 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 3 DT A 1 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 3 DC A 2 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 3 DC A 3 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 3 DT B 4 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 3 DC B 5 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 3 DC B 6 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 3 DT C 7 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 3 DC C 8 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 3 DC C 9 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 3 DT D 10 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 3 DC D 11 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 3 DC D 12 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 4 DT A 1 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 4 DC A 2 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 4 DC A 3 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 4 DT B 4 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 4 DT B 4 C6 - C5 - C7 ANGL. DEV. = -3.6 DEGREES REMARK 500 4 DC B 5 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 4 DT C 7 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 4 DT C 7 C6 - C5 - C7 ANGL. DEV. = -3.6 DEGREES REMARK 500 4 DC C 8 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 4 DC C 9 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 4 DT D 10 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 4 DT D 10 C6 - C5 - C7 ANGL. DEV. = -3.6 DEGREES REMARK 500 4 DC D 11 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 102 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 105D A 1 3 PDB 105D 105D 1 3 DBREF 105D B 4 6 PDB 105D 105D 4 6 DBREF 105D C 7 9 PDB 105D 105D 7 9 DBREF 105D D 10 12 PDB 105D 105D 10 12 SEQRES 1 A 3 DT DC DC SEQRES 1 B 3 DT DC DC SEQRES 1 C 3 DT DC DC SEQRES 1 D 3 DT DC DC CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1