data_126D # _entry.id 126D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 126D pdb_0000126d 10.2210/pdb126d/pdb RCSB BDJ051 ? ? WWPDB D_1000170061 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1993-10-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 126D _pdbx_database_status.recvd_initial_deposition_date 1993-06-14 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Goodsell, D.S.' 1 'Kopka, M.L.' 2 'Cascio, D.' 3 'Dickerson, R.E.' 4 # _citation.id primary _citation.title 'Crystal structure of CATGGCCATG and its implications for A-tract bending models.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 90 _citation.page_first 2930 _citation.page_last 2934 _citation.year 1993 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8464909 _citation.pdbx_database_id_DOI 10.1073/pnas.90.7.2930 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Goodsell, D.S.' 1 ? primary 'Kopka, M.L.' 2 ? primary 'Cascio, D.' 3 ? primary 'Dickerson, R.E.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3') ; 3045.004 2 ? ? ? ? 2 water nat water 18.015 49 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DA)(DT)(DG)(DG)(DC)(DC)(DA)(DT)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CATGGCCATG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DA n 1 3 DT n 1 4 DG n 1 5 DG n 1 6 DC n 1 7 DC n 1 8 DA n 1 9 DT n 1 10 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DA 2 2 2 DA A A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DA 8 8 8 DA A A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DG 10 10 10 DG G A . n B 1 1 DC 1 11 11 DC C B . n B 1 2 DA 2 12 12 DA A B . n B 1 3 DT 3 13 13 DT T B . n B 1 4 DG 4 14 14 DG G B . n B 1 5 DG 5 15 15 DG G B . n B 1 6 DC 6 16 16 DC C B . n B 1 7 DC 7 17 17 DC C B . n B 1 8 DA 8 18 18 DA A B . n B 1 9 DT 9 19 19 DT T B . n B 1 10 DG 10 20 20 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 21 21 HOH HOH A . C 2 HOH 2 22 22 HOH HOH A . C 2 HOH 3 23 23 HOH HOH A . C 2 HOH 4 24 24 HOH HOH A . C 2 HOH 5 31 31 HOH HOH A . C 2 HOH 6 37 37 HOH HOH A . C 2 HOH 7 38 38 HOH HOH A . C 2 HOH 8 39 39 HOH HOH A . C 2 HOH 9 40 40 HOH HOH A . C 2 HOH 10 41 41 HOH HOH A . C 2 HOH 11 43 43 HOH HOH A . C 2 HOH 12 45 45 HOH HOH A . C 2 HOH 13 48 48 HOH HOH A . C 2 HOH 14 49 49 HOH HOH A . C 2 HOH 15 52 52 HOH HOH A . C 2 HOH 16 53 53 HOH HOH A . C 2 HOH 17 56 56 HOH HOH A . C 2 HOH 18 59 59 HOH HOH A . C 2 HOH 19 61 61 HOH HOH A . C 2 HOH 20 62 62 HOH HOH A . C 2 HOH 21 65 65 HOH HOH A . C 2 HOH 22 67 67 HOH HOH A . C 2 HOH 23 68 68 HOH HOH A . C 2 HOH 24 69 69 HOH HOH A . D 2 HOH 1 25 25 HOH HOH B . D 2 HOH 2 26 26 HOH HOH B . D 2 HOH 3 27 27 HOH HOH B . D 2 HOH 4 28 28 HOH HOH B . D 2 HOH 5 29 29 HOH HOH B . D 2 HOH 6 30 30 HOH HOH B . D 2 HOH 7 32 32 HOH HOH B . D 2 HOH 8 33 33 HOH HOH B . D 2 HOH 9 34 34 HOH HOH B . D 2 HOH 10 35 35 HOH HOH B . D 2 HOH 11 36 36 HOH HOH B . D 2 HOH 12 42 42 HOH HOH B . D 2 HOH 13 44 44 HOH HOH B . D 2 HOH 14 46 46 HOH HOH B . D 2 HOH 15 47 47 HOH HOH B . D 2 HOH 16 50 50 HOH HOH B . D 2 HOH 17 51 51 HOH HOH B . D 2 HOH 18 54 54 HOH HOH B . D 2 HOH 19 55 55 HOH HOH B . D 2 HOH 20 57 57 HOH HOH B . D 2 HOH 21 58 58 HOH HOH B . D 2 HOH 22 60 60 HOH HOH B . D 2 HOH 23 63 63 HOH HOH B . D 2 HOH 24 64 64 HOH HOH B . D 2 HOH 25 66 66 HOH HOH B . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 126D _cell.length_a 36.600 _cell.length_b 42.490 _cell.length_c 34.690 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 126D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 126D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_percent_sol 44.46 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 278.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION, SITTING DROP, temperature 278.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 CACL2 ? ? ? 1 4 1 SPERMINE_HCL ? ? ? 1 5 2 WATER ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 278.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS II' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 126D _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.000 _reflns.number_obs 3217 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 126D _refine.ls_number_reflns_obs 3217 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1960000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 49 _refine_hist.number_atoms_total 453 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 8.000 # _database_PDB_matrix.entry_id 126D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 126D _struct.title 'CRYSTAL STRUCTURE OF CATGGCCATG AND ITS IMPLICATIONS FOR A-TRACT BENDING MODELS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 126D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 126D _struct_ref.pdbx_db_accession 126D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 126D A 1 ? 10 ? 126D 1 ? 10 ? 1 10 2 1 126D B 1 ? 10 ? 126D 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 2 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 2 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 3 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 3 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 5 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 5 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 5 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 6 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 6 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 6 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 7 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 7 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 7 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 8 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 8 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 9 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 9 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OP1 B DG 20 ? ? 1_555 O B HOH 28 ? ? 4_555 2.12 2 1 OP2 B DG 15 ? ? 1_555 O A HOH 52 ? ? 4_456 2.14 3 1 "O5'" A DC 1 ? ? 1_555 "O3'" A DG 10 ? ? 1_554 2.16 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? 1.496 1.420 0.076 0.011 N 2 1 N3 A DC 1 ? ? C4 A DC 1 ? ? 1.389 1.335 0.054 0.007 N 3 1 "C4'" A DA 2 ? ? "C3'" A DA 2 ? ? 1.617 1.529 0.088 0.010 N 4 1 "C3'" A DA 2 ? ? "C2'" A DA 2 ? ? 1.435 1.516 -0.081 0.008 N 5 1 "O4'" A DA 2 ? ? "C4'" A DA 2 ? ? 1.385 1.446 -0.061 0.010 N 6 1 N1 A DA 2 ? ? C2 A DA 2 ? ? 1.419 1.339 0.080 0.009 N 7 1 C5 A DA 2 ? ? N7 A DA 2 ? ? 1.437 1.388 0.049 0.006 N 8 1 C8 A DA 2 ? ? N9 A DA 2 ? ? 1.267 1.373 -0.106 0.008 N 9 1 N9 A DA 2 ? ? C4 A DA 2 ? ? 1.442 1.374 0.068 0.006 N 10 1 P A DT 3 ? ? "O5'" A DT 3 ? ? 1.757 1.593 0.164 0.010 N 11 1 "O4'" A DT 3 ? ? "C4'" A DT 3 ? ? 1.375 1.446 -0.071 0.010 N 12 1 C5 A DT 3 ? ? C6 A DT 3 ? ? 1.283 1.339 -0.056 0.007 N 13 1 C6 A DT 3 ? ? N1 A DT 3 ? ? 1.326 1.378 -0.052 0.007 N 14 1 C4 A DT 3 ? ? O4 A DT 3 ? ? 1.340 1.228 0.112 0.009 N 15 1 P A DG 4 ? ? "O5'" A DG 4 ? ? 1.675 1.593 0.082 0.010 N 16 1 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 1.437 1.509 -0.072 0.011 N 17 1 C2 A DG 4 ? ? N3 A DG 4 ? ? 1.262 1.323 -0.061 0.008 N 18 1 N3 A DG 4 ? ? C4 A DG 4 ? ? 1.413 1.350 0.063 0.007 N 19 1 C4 A DG 4 ? ? C5 A DG 4 ? ? 1.320 1.379 -0.059 0.007 N 20 1 N7 A DG 4 ? ? C8 A DG 4 ? ? 1.246 1.305 -0.059 0.006 N 21 1 P A DG 5 ? ? OP1 A DG 5 ? ? 1.598 1.485 0.113 0.017 N 22 1 "C5'" A DG 5 ? ? "C4'" A DG 5 ? ? 1.435 1.509 -0.074 0.011 N 23 1 "C4'" A DG 5 ? ? "C3'" A DG 5 ? ? 1.646 1.529 0.117 0.010 N 24 1 "C3'" A DG 5 ? ? "C2'" A DG 5 ? ? 1.424 1.516 -0.092 0.008 N 25 1 N1 A DG 5 ? ? C2 A DG 5 ? ? 1.314 1.373 -0.059 0.008 N 26 1 C5 A DG 5 ? ? N7 A DG 5 ? ? 1.428 1.388 0.040 0.006 N 27 1 C4 A DC 6 ? ? N4 A DC 6 ? ? 1.242 1.335 -0.093 0.009 N 28 1 N1 A DC 6 ? ? C6 A DC 6 ? ? 1.285 1.367 -0.082 0.006 N 29 1 N3 A DC 6 ? ? C4 A DC 6 ? ? 1.398 1.335 0.063 0.007 N 30 1 "C5'" A DC 7 ? ? "C4'" A DC 7 ? ? 1.599 1.512 0.087 0.007 N 31 1 "O3'" A DC 7 ? ? "C3'" A DC 7 ? ? 1.363 1.419 -0.056 0.006 N 32 1 C4 A DC 7 ? ? C5 A DC 7 ? ? 1.504 1.425 0.079 0.008 N 33 1 "C2'" A DA 8 ? ? "C1'" A DA 8 ? ? 1.450 1.518 -0.068 0.010 N 34 1 "O4'" A DA 8 ? ? "C4'" A DA 8 ? ? 1.384 1.446 -0.062 0.010 N 35 1 N9 A DA 8 ? ? C4 A DA 8 ? ? 1.319 1.374 -0.055 0.006 N 36 1 P A DT 9 ? ? "O5'" A DT 9 ? ? 1.661 1.593 0.068 0.010 N 37 1 C4 A DT 9 ? ? O4 A DT 9 ? ? 1.300 1.228 0.072 0.009 N 38 1 P A DG 10 ? ? "O5'" A DG 10 ? ? 1.520 1.593 -0.073 0.010 N 39 1 N3 A DG 10 ? ? C4 A DG 10 ? ? 1.393 1.350 0.043 0.007 N 40 1 C5 A DG 10 ? ? C6 A DG 10 ? ? 1.352 1.419 -0.067 0.010 N 41 1 C6 A DG 10 ? ? N1 A DG 10 ? ? 1.298 1.391 -0.093 0.007 N 42 1 N9 A DG 10 ? ? C4 A DG 10 ? ? 1.314 1.375 -0.061 0.008 N 43 1 N3 B DC 11 ? ? C4 B DC 11 ? ? 1.402 1.335 0.067 0.007 N 44 1 P B DA 12 ? ? "O5'" B DA 12 ? ? 1.657 1.593 0.064 0.010 N 45 1 "C4'" B DA 12 ? ? "C3'" B DA 12 ? ? 1.625 1.529 0.096 0.010 N 46 1 "O4'" B DA 12 ? ? "C1'" B DA 12 ? ? 1.487 1.420 0.067 0.011 N 47 1 "O4'" B DA 12 ? ? "C4'" B DA 12 ? ? 1.350 1.446 -0.096 0.010 N 48 1 N1 B DA 12 ? ? C2 B DA 12 ? ? 1.413 1.339 0.074 0.009 N 49 1 C4 B DA 12 ? ? C5 B DA 12 ? ? 1.427 1.383 0.044 0.007 N 50 1 "C4'" B DT 13 ? ? "C3'" B DT 13 ? ? 1.615 1.529 0.086 0.010 N 51 1 "C3'" B DT 13 ? ? "C2'" B DT 13 ? ? 1.468 1.516 -0.048 0.008 N 52 1 "O4'" B DT 13 ? ? "C4'" B DT 13 ? ? 1.317 1.446 -0.129 0.010 N 53 1 N1 B DT 13 ? ? C2 B DT 13 ? ? 1.313 1.376 -0.063 0.008 N 54 1 C4 B DT 13 ? ? O4 B DT 13 ? ? 1.351 1.228 0.123 0.009 N 55 1 C2 B DG 14 ? ? N3 B DG 14 ? ? 1.424 1.323 0.101 0.008 N 56 1 C5 B DG 14 ? ? N7 B DG 14 ? ? 1.329 1.388 -0.059 0.006 N 57 1 N7 B DG 14 ? ? C8 B DG 14 ? ? 1.230 1.305 -0.075 0.006 N 58 1 N9 B DG 14 ? ? C4 B DG 14 ? ? 1.298 1.375 -0.077 0.008 N 59 1 C2 B DG 14 ? ? N2 B DG 14 ? ? 1.277 1.341 -0.064 0.010 N 60 1 P B DG 15 ? ? "O5'" B DG 15 ? ? 1.677 1.593 0.084 0.010 N 61 1 "C5'" B DG 15 ? ? "C4'" B DG 15 ? ? 1.564 1.512 0.052 0.007 N 62 1 "C3'" B DG 15 ? ? "C2'" B DG 15 ? ? 1.460 1.516 -0.056 0.008 N 63 1 "O4'" B DG 15 ? ? "C4'" B DG 15 ? ? 1.364 1.446 -0.082 0.010 N 64 1 C6 B DG 15 ? ? N1 B DG 15 ? ? 1.296 1.391 -0.095 0.007 N 65 1 C8 B DG 15 ? ? N9 B DG 15 ? ? 1.298 1.374 -0.076 0.007 N 66 1 "O5'" B DC 16 ? ? "C5'" B DC 16 ? ? 1.578 1.440 0.138 0.016 N 67 1 "C3'" B DC 16 ? ? "C2'" B DC 16 ? ? 1.457 1.516 -0.059 0.008 N 68 1 N1 B DC 16 ? ? C2 B DC 16 ? ? 1.462 1.397 0.065 0.010 N 69 1 N1 B DC 16 ? ? C6 B DC 16 ? ? 1.328 1.367 -0.039 0.006 N 70 1 N3 B DC 16 ? ? C4 B DC 16 ? ? 1.391 1.335 0.056 0.007 N 71 1 "O3'" B DC 17 ? ? "C3'" B DC 17 ? ? 1.558 1.435 0.123 0.013 N 72 1 C4 B DC 17 ? ? C5 B DC 17 ? ? 1.366 1.425 -0.059 0.008 N 73 1 P B DA 18 ? ? "O5'" B DA 18 ? ? 1.674 1.593 0.081 0.010 N 74 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? 1.524 1.420 0.104 0.011 N 75 1 "O4'" B DA 18 ? ? "C4'" B DA 18 ? ? 1.312 1.446 -0.134 0.010 N 76 1 N1 B DA 18 ? ? C2 B DA 18 ? ? 1.407 1.339 0.068 0.009 N 77 1 C2 B DA 18 ? ? N3 B DA 18 ? ? 1.420 1.331 0.089 0.009 N 78 1 "C2'" B DT 19 ? ? "C1'" B DT 19 ? ? 1.433 1.518 -0.085 0.010 N 79 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? 1.584 1.420 0.164 0.011 N 80 1 N3 B DT 19 ? ? C4 B DT 19 ? ? 1.333 1.382 -0.049 0.008 N 81 1 C2 B DT 19 ? ? O2 B DT 19 ? ? 1.272 1.220 0.052 0.008 N 82 1 P B DG 20 ? ? "O5'" B DG 20 ? ? 1.513 1.593 -0.080 0.010 N 83 1 "C5'" B DG 20 ? ? "C4'" B DG 20 ? ? 1.589 1.512 0.077 0.007 N 84 1 "C3'" B DG 20 ? ? "C2'" B DG 20 ? ? 1.466 1.516 -0.050 0.008 N 85 1 C4 B DG 20 ? ? C5 B DG 20 ? ? 1.322 1.379 -0.057 0.007 N 86 1 C6 B DG 20 ? ? N1 B DG 20 ? ? 1.303 1.391 -0.088 0.007 N 87 1 N7 B DG 20 ? ? C8 B DG 20 ? ? 1.268 1.305 -0.037 0.006 N 88 1 C6 B DG 20 ? ? O6 B DG 20 ? ? 1.317 1.237 0.080 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 101.46 104.50 -3.04 0.40 N 2 1 "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? "O4'" A DC 1 ? ? 116.80 109.80 7.00 1.10 N 3 1 "C1'" A DC 1 ? ? "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? 115.88 110.30 5.58 0.70 N 4 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? "C2'" A DC 1 ? ? 100.46 105.90 -5.44 0.80 N 5 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 97.73 108.00 -10.27 0.70 N 6 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 118.59 121.90 -3.31 0.40 N 7 1 C5 A DC 1 ? ? C6 A DC 1 ? ? N1 A DC 1 ? ? 124.15 121.00 3.15 0.50 N 8 1 "O4'" A DA 2 ? ? "C4'" A DA 2 ? ? "C3'" A DA 2 ? ? 101.30 104.50 -3.20 0.40 N 9 1 "C5'" A DA 2 ? ? "C4'" A DA 2 ? ? "O4'" A DA 2 ? ? 97.89 109.30 -11.41 1.90 N 10 1 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? "C2'" A DA 2 ? ? 112.12 106.80 5.32 0.50 N 11 1 N7 A DA 2 ? ? C8 A DA 2 ? ? N9 A DA 2 ? ? 117.86 113.80 4.06 0.50 N 12 1 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 114.60 118.60 -4.00 0.60 N 13 1 OP1 A DT 3 ? ? P A DT 3 ? ? OP2 A DT 3 ? ? 137.32 119.60 17.72 1.50 N 14 1 "O5'" A DT 3 ? ? P A DT 3 ? ? OP2 A DT 3 ? ? 99.23 105.70 -6.47 0.90 N 15 1 P A DT 3 ? ? "O5'" A DT 3 ? ? "C5'" A DT 3 ? ? 133.77 120.90 12.87 1.60 N 16 1 "C3'" A DT 3 ? ? "C2'" A DT 3 ? ? "C1'" A DT 3 ? ? 89.71 102.40 -12.69 0.80 N 17 1 N1 A DT 3 ? ? C2 A DT 3 ? ? N3 A DT 3 ? ? 119.64 114.60 5.04 0.60 N 18 1 C2 A DT 3 ? ? N3 A DT 3 ? ? C4 A DT 3 ? ? 114.81 127.20 -12.39 0.60 N 19 1 N3 A DT 3 ? ? C4 A DT 3 ? ? C5 A DT 3 ? ? 122.68 115.20 7.48 0.60 N 20 1 N3 A DT 3 ? ? C2 A DT 3 ? ? O2 A DT 3 ? ? 112.09 122.30 -10.21 0.60 N 21 1 N3 A DT 3 ? ? C4 A DT 3 ? ? O4 A DT 3 ? ? 109.11 119.90 -10.79 0.60 N 22 1 OP1 A DG 4 ? ? P A DG 4 ? ? OP2 A DG 4 ? ? 129.90 119.60 10.30 1.50 N 23 1 P A DG 4 ? ? "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? 109.80 120.90 -11.10 1.60 N 24 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 101.92 104.50 -2.58 0.40 N 25 1 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? "O4'" A DG 4 ? ? 123.03 109.80 13.23 1.10 N 26 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 101.40 108.00 -6.60 0.70 N 27 1 C4 A DG 4 ? ? C5 A DG 4 ? ? N7 A DG 4 ? ? 107.20 110.80 -3.60 0.40 N 28 1 C5 A DG 4 ? ? N7 A DG 4 ? ? C8 A DG 4 ? ? 108.91 104.30 4.61 0.50 N 29 1 C8 A DG 4 ? ? N9 A DG 4 ? ? C4 A DG 4 ? ? 102.92 106.40 -3.48 0.40 N 30 1 N9 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 108.99 105.40 3.59 0.40 N 31 1 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 113.96 119.90 -5.94 0.60 N 32 1 C5 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 135.21 128.60 6.61 0.60 N 33 1 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DG 5 ? ? 136.46 119.70 16.76 1.20 Y 34 1 "O5'" A DG 5 ? ? P A DG 5 ? ? OP2 A DG 5 ? ? 117.98 110.70 7.28 1.20 N 35 1 P A DG 5 ? ? "O5'" A DG 5 ? ? "C5'" A DG 5 ? ? 107.30 120.90 -13.60 1.60 N 36 1 "C1'" A DG 5 ? ? "O4'" A DG 5 ? ? "C4'" A DG 5 ? ? 103.37 110.10 -6.73 1.00 N 37 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? "C2'" A DG 5 ? ? 113.59 106.80 6.79 0.50 N 38 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 116.80 108.30 8.50 0.30 N 39 1 C6 A DG 5 ? ? N1 A DG 5 ? ? C2 A DG 5 ? ? 128.93 125.10 3.83 0.60 N 40 1 N1 A DG 5 ? ? C2 A DG 5 ? ? N3 A DG 5 ? ? 116.28 123.90 -7.62 0.60 N 41 1 C2 A DG 5 ? ? N3 A DG 5 ? ? C4 A DG 5 ? ? 118.31 111.90 6.41 0.50 N 42 1 C4 A DG 5 ? ? C5 A DG 5 ? ? C6 A DG 5 ? ? 114.72 118.80 -4.08 0.60 N 43 1 C5 A DG 5 ? ? C6 A DG 5 ? ? N1 A DG 5 ? ? 115.45 111.50 3.95 0.50 N 44 1 C5 A DG 5 ? ? N7 A DG 5 ? ? C8 A DG 5 ? ? 101.16 104.30 -3.14 0.50 N 45 1 N7 A DG 5 ? ? C8 A DG 5 ? ? N9 A DG 5 ? ? 116.41 113.10 3.31 0.50 N 46 1 C6 A DG 5 ? ? C5 A DG 5 ? ? N7 A DG 5 ? ? 134.03 130.40 3.63 0.60 N 47 1 N1 A DG 5 ? ? C2 A DG 5 ? ? N2 A DG 5 ? ? 121.81 116.20 5.61 0.90 N 48 1 C5 A DG 5 ? ? C6 A DG 5 ? ? O6 A DG 5 ? ? 124.41 128.60 -4.19 0.60 N 49 1 C8 A DG 5 ? ? N9 A DG 5 ? ? "C1'" A DG 5 ? ? 137.32 127.00 10.32 1.30 N 50 1 C4 A DG 5 ? ? N9 A DG 5 ? ? "C1'" A DG 5 ? ? 116.86 126.50 -9.64 1.30 N 51 1 "C3'" A DG 5 ? ? "O3'" A DG 5 ? ? P A DC 6 ? ? 143.01 119.70 23.31 1.20 Y 52 1 "O5'" A DC 6 ? ? P A DC 6 ? ? OP1 A DC 6 ? ? 122.01 110.70 11.31 1.20 N 53 1 "O5'" A DC 6 ? ? "C5'" A DC 6 ? ? "C4'" A DC 6 ? ? 95.74 109.40 -13.66 0.80 N 54 1 "C1'" A DC 6 ? ? "O4'" A DC 6 ? ? "C4'" A DC 6 ? ? 101.06 110.10 -9.04 1.00 N 55 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 97.95 108.00 -10.05 0.70 N 56 1 C6 A DC 6 ? ? N1 A DC 6 ? ? C2 A DC 6 ? ? 128.50 120.30 8.20 0.40 N 57 1 N1 A DC 6 ? ? C2 A DC 6 ? ? N3 A DC 6 ? ? 113.55 119.20 -5.65 0.70 N 58 1 C4 A DC 6 ? ? C5 A DC 6 ? ? C6 A DC 6 ? ? 113.15 117.40 -4.25 0.50 N 59 1 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 128.43 118.90 9.53 0.60 N 60 1 C2 A DC 6 ? ? N1 A DC 6 ? ? "C1'" A DC 6 ? ? 110.70 118.80 -8.10 1.10 N 61 1 "O3'" A DC 6 ? ? P A DC 7 ? ? OP1 A DC 7 ? ? 86.95 105.20 -18.25 2.20 Y 62 1 OP1 A DC 7 ? ? P A DC 7 ? ? OP2 A DC 7 ? ? 130.50 119.60 10.90 1.50 N 63 1 "O5'" A DC 7 ? ? P A DC 7 ? ? OP1 A DC 7 ? ? 121.92 110.70 11.22 1.20 N 64 1 P A DC 7 ? ? "O5'" A DC 7 ? ? "C5'" A DC 7 ? ? 133.82 120.90 12.92 1.60 N 65 1 "C3'" A DC 7 ? ? "C2'" A DC 7 ? ? "C1'" A DC 7 ? ? 96.94 102.40 -5.46 0.80 N 66 1 N1 A DC 7 ? ? "C1'" A DC 7 ? ? "C2'" A DC 7 ? ? 123.46 114.30 9.16 1.40 N 67 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 99.19 108.00 -8.81 0.70 N 68 1 N3 A DC 7 ? ? C4 A DC 7 ? ? C5 A DC 7 ? ? 119.31 121.90 -2.59 0.40 N 69 1 N3 A DC 7 ? ? C4 A DC 7 ? ? N4 A DC 7 ? ? 127.98 118.00 9.98 0.70 N 70 1 C5 A DC 7 ? ? C4 A DC 7 ? ? N4 A DC 7 ? ? 112.36 120.20 -7.84 0.70 N 71 1 "C3'" A DC 7 ? ? "O3'" A DC 7 ? ? P A DA 8 ? ? 141.45 119.70 21.75 1.20 Y 72 1 "O3'" A DC 7 ? ? P A DA 8 ? ? "O5'" A DA 8 ? ? 117.86 104.00 13.86 1.90 Y 73 1 "C5'" A DA 8 ? ? "C4'" A DA 8 ? ? "O4'" A DA 8 ? ? 116.85 109.80 7.05 1.10 N 74 1 C2 A DA 8 ? ? N3 A DA 8 ? ? C4 A DA 8 ? ? 113.72 110.60 3.12 0.50 N 75 1 C5 A DA 8 ? ? N7 A DA 8 ? ? C8 A DA 8 ? ? 107.74 103.90 3.84 0.50 N 76 1 N7 A DA 8 ? ? C8 A DA 8 ? ? N9 A DA 8 ? ? 108.19 113.80 -5.61 0.50 N 77 1 N9 A DA 8 ? ? C4 A DA 8 ? ? C5 A DA 8 ? ? 109.04 105.80 3.24 0.40 N 78 1 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 110.56 118.60 -8.04 0.60 N 79 1 C5 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 131.80 123.70 8.10 0.80 N 80 1 P A DT 9 ? ? "O5'" A DT 9 ? ? "C5'" A DT 9 ? ? 132.12 120.90 11.22 1.60 N 81 1 "O4'" A DT 9 ? ? "C4'" A DT 9 ? ? "C3'" A DT 9 ? ? 96.82 104.50 -7.68 0.40 N 82 1 "C5'" A DT 9 ? ? "C4'" A DT 9 ? ? "O4'" A DT 9 ? ? 116.50 109.80 6.70 1.10 N 83 1 N3 A DT 9 ? ? C4 A DT 9 ? ? O4 A DT 9 ? ? 114.56 119.90 -5.34 0.60 N 84 1 C5 A DT 9 ? ? C4 A DT 9 ? ? O4 A DT 9 ? ? 129.20 124.90 4.30 0.70 N 85 1 C4 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 122.82 119.00 3.82 0.60 N 86 1 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 117.34 122.90 -5.56 0.60 N 87 1 "O3'" A DT 9 ? ? P A DG 10 ? ? OP1 A DG 10 ? ? 88.56 105.20 -16.64 2.20 Y 88 1 OP1 A DG 10 ? ? P A DG 10 ? ? OP2 A DG 10 ? ? 93.53 119.60 -26.07 1.50 N 89 1 "O5'" A DG 10 ? ? P A DG 10 ? ? OP1 A DG 10 ? ? 135.27 110.70 24.57 1.20 N 90 1 "O5'" A DG 10 ? ? P A DG 10 ? ? OP2 A DG 10 ? ? 122.45 110.70 11.75 1.20 N 91 1 C5 A DG 10 ? ? C6 A DG 10 ? ? N1 A DG 10 ? ? 115.74 111.50 4.24 0.50 N 92 1 N9 A DG 10 ? ? C4 A DG 10 ? ? C5 A DG 10 ? ? 108.54 105.40 3.14 0.40 N 93 1 N1 A DG 10 ? ? C2 A DG 10 ? ? N2 A DG 10 ? ? 124.74 116.20 8.54 0.90 N 94 1 N3 A DG 10 ? ? C2 A DG 10 ? ? N2 A DG 10 ? ? 113.25 119.90 -6.65 0.70 N 95 1 C5 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 123.18 128.60 -5.42 0.60 N 96 1 "O4'" B DC 11 ? ? "C4'" B DC 11 ? ? "C3'" B DC 11 ? ? 101.27 104.50 -3.23 0.40 N 97 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? "C2'" B DC 11 ? ? 110.01 106.80 3.21 0.50 N 98 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 111.96 108.30 3.66 0.30 N 99 1 C6 B DC 11 ? ? N1 B DC 11 ? ? C2 B DC 11 ? ? 123.25 120.30 2.95 0.40 N 100 1 N3 B DC 11 ? ? C4 B DC 11 ? ? C5 B DC 11 ? ? 125.02 121.90 3.12 0.40 N 101 1 C4 B DC 11 ? ? C5 B DC 11 ? ? C6 B DC 11 ? ? 112.89 117.40 -4.51 0.50 N 102 1 N3 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 128.68 121.90 6.78 0.70 N 103 1 N3 B DC 11 ? ? C4 B DC 11 ? ? N4 B DC 11 ? ? 112.57 118.00 -5.43 0.70 N 104 1 C2 B DC 11 ? ? N1 B DC 11 ? ? "C1'" B DC 11 ? ? 111.72 118.80 -7.08 1.10 N 105 1 "O5'" B DA 12 ? ? P B DA 12 ? ? OP1 B DA 12 ? ? 99.06 105.70 -6.64 0.90 N 106 1 "O4'" B DA 12 ? ? "C4'" B DA 12 ? ? "C3'" B DA 12 ? ? 100.61 104.50 -3.89 0.40 N 107 1 "O4'" B DA 12 ? ? "C1'" B DA 12 ? ? N9 B DA 12 ? ? 101.91 108.00 -6.09 0.70 N 108 1 N1 B DA 12 ? ? C6 B DA 12 ? ? N6 B DA 12 ? ? 122.20 118.60 3.60 0.60 N 109 1 "C3'" B DA 12 ? ? "O3'" B DA 12 ? ? P B DT 13 ? ? 131.26 119.70 11.56 1.20 Y 110 1 OP1 B DT 13 ? ? P B DT 13 ? ? OP2 B DT 13 ? ? 110.06 119.60 -9.54 1.50 N 111 1 "O5'" B DT 13 ? ? "C5'" B DT 13 ? ? "C4'" B DT 13 ? ? 101.03 109.40 -8.37 0.80 N 112 1 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? "C2'" B DT 13 ? ? 99.25 105.90 -6.65 0.80 N 113 1 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? N1 B DT 13 ? ? 111.73 108.30 3.43 0.30 N 114 1 C6 B DT 13 ? ? N1 B DT 13 ? ? C2 B DT 13 ? ? 118.07 121.30 -3.23 0.50 N 115 1 N1 B DT 13 ? ? C2 B DT 13 ? ? N3 B DT 13 ? ? 119.99 114.60 5.39 0.60 N 116 1 C2 B DT 13 ? ? N3 B DT 13 ? ? C4 B DT 13 ? ? 123.09 127.20 -4.11 0.60 N 117 1 N1 B DT 13 ? ? C2 B DT 13 ? ? O2 B DT 13 ? ? 117.43 123.10 -5.67 0.80 N 118 1 C4 B DT 13 ? ? C5 B DT 13 ? ? C7 B DT 13 ? ? 122.67 119.00 3.67 0.60 N 119 1 "C3'" B DT 13 ? ? "O3'" B DT 13 ? ? P B DG 14 ? ? 129.82 119.70 10.12 1.20 Y 120 1 OP1 B DG 14 ? ? P B DG 14 ? ? OP2 B DG 14 ? ? 102.07 119.60 -17.53 1.50 N 121 1 "O5'" B DG 14 ? ? P B DG 14 ? ? OP1 B DG 14 ? ? 119.58 110.70 8.88 1.20 N 122 1 "O5'" B DG 14 ? ? P B DG 14 ? ? OP2 B DG 14 ? ? 127.54 110.70 16.84 1.20 N 123 1 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? 99.60 104.50 -4.90 0.40 N 124 1 "C5'" B DG 14 ? ? "C4'" B DG 14 ? ? "O4'" B DG 14 ? ? 120.17 109.80 10.37 1.10 N 125 1 "C1'" B DG 14 ? ? "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? 115.08 110.30 4.78 0.70 N 126 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 110.75 108.30 2.45 0.30 N 127 1 N1 B DG 14 ? ? C2 B DG 14 ? ? N3 B DG 14 ? ? 129.25 123.90 5.35 0.60 N 128 1 C2 B DG 14 ? ? N3 B DG 14 ? ? C4 B DG 14 ? ? 103.96 111.90 -7.94 0.50 N 129 1 C5 B DG 14 ? ? N7 B DG 14 ? ? C8 B DG 14 ? ? 97.53 104.30 -6.77 0.50 N 130 1 N7 B DG 14 ? ? C8 B DG 14 ? ? N9 B DG 14 ? ? 124.20 113.10 11.10 0.50 N 131 1 C8 B DG 14 ? ? N9 B DG 14 ? ? C4 B DG 14 ? ? 98.32 106.40 -8.08 0.40 N 132 1 N9 B DG 14 ? ? C4 B DG 14 ? ? C5 B DG 14 ? ? 108.23 105.40 2.83 0.40 N 133 1 N3 B DG 14 ? ? C4 B DG 14 ? ? N9 B DG 14 ? ? 120.73 126.00 -5.27 0.60 N 134 1 OP1 B DG 15 ? ? P B DG 15 ? ? OP2 B DG 15 ? ? 140.08 119.60 20.48 1.50 N 135 1 "O5'" B DG 15 ? ? P B DG 15 ? ? OP2 B DG 15 ? ? 91.65 105.70 -14.05 0.90 N 136 1 "C5'" B DG 15 ? ? "C4'" B DG 15 ? ? "O4'" B DG 15 ? ? 121.17 109.80 11.37 1.10 N 137 1 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? N9 B DG 15 ? ? 103.37 108.00 -4.63 0.70 N 138 1 C4 B DG 15 ? ? C5 B DG 15 ? ? N7 B DG 15 ? ? 107.37 110.80 -3.43 0.40 N 139 1 C6 B DG 15 ? ? C5 B DG 15 ? ? N7 B DG 15 ? ? 135.20 130.40 4.80 0.60 N 140 1 N3 B DG 15 ? ? C2 B DG 15 ? ? N2 B DG 15 ? ? 112.24 119.90 -7.66 0.70 N 141 1 OP1 B DC 16 ? ? P B DC 16 ? ? OP2 B DC 16 ? ? 130.60 119.60 11.00 1.50 N 142 1 "O4'" B DC 16 ? ? "C1'" B DC 16 ? ? "C2'" B DC 16 ? ? 99.92 105.90 -5.98 0.80 N 143 1 C2 B DC 16 ? ? N3 B DC 16 ? ? C4 B DC 16 ? ? 123.25 119.90 3.35 0.50 N 144 1 C5 B DC 16 ? ? C6 B DC 16 ? ? N1 B DC 16 ? ? 124.48 121.00 3.48 0.50 N 145 1 N1 B DC 16 ? ? C2 B DC 16 ? ? O2 B DC 16 ? ? 123.41 118.90 4.51 0.60 N 146 1 C6 B DC 16 ? ? N1 B DC 16 ? ? "C1'" B DC 16 ? ? 129.29 120.80 8.49 1.20 N 147 1 C2 B DC 16 ? ? N1 B DC 16 ? ? "C1'" B DC 16 ? ? 109.75 118.80 -9.05 1.10 N 148 1 "C3'" B DC 16 ? ? "O3'" B DC 16 ? ? P B DC 17 ? ? 129.05 119.70 9.35 1.20 Y 149 1 "O5'" B DC 17 ? ? "C5'" B DC 17 ? ? "C4'" B DC 17 ? ? 104.47 109.40 -4.93 0.80 N 150 1 P B DC 17 ? ? "O5'" B DC 17 ? ? "C5'" B DC 17 ? ? 130.70 120.90 9.80 1.60 N 151 1 "C5'" B DC 17 ? ? "C4'" B DC 17 ? ? "O4'" B DC 17 ? ? 117.99 109.80 8.19 1.10 N 152 1 N1 B DC 17 ? ? C2 B DC 17 ? ? O2 B DC 17 ? ? 115.00 118.90 -3.90 0.60 N 153 1 N3 B DC 17 ? ? C2 B DC 17 ? ? O2 B DC 17 ? ? 128.00 121.90 6.10 0.70 N 154 1 C2 B DC 17 ? ? N1 B DC 17 ? ? "C1'" B DC 17 ? ? 111.65 118.80 -7.15 1.10 N 155 1 "C3'" B DC 17 ? ? "O3'" B DC 17 ? ? P B DA 18 ? ? 110.77 119.70 -8.93 1.20 Y 156 1 "O3'" B DC 17 ? ? P B DA 18 ? ? "O5'" B DA 18 ? ? 87.24 104.00 -16.76 1.90 Y 157 1 "O5'" B DA 18 ? ? P B DA 18 ? ? OP1 B DA 18 ? ? 118.45 110.70 7.75 1.20 N 158 1 "O5'" B DA 18 ? ? "C5'" B DA 18 ? ? "C4'" B DA 18 ? ? 104.52 109.40 -4.88 0.80 N 159 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 110.20 108.30 1.90 0.30 N 160 1 N1 B DA 18 ? ? C2 B DA 18 ? ? N3 B DA 18 ? ? 123.35 129.30 -5.95 0.50 N 161 1 C4 B DA 18 ? ? C5 B DA 18 ? ? C6 B DA 18 ? ? 120.36 117.00 3.36 0.50 N 162 1 C6 B DA 18 ? ? C5 B DA 18 ? ? N7 B DA 18 ? ? 127.97 132.30 -4.33 0.70 N 163 1 "C3'" B DA 18 ? ? "O3'" B DA 18 ? ? P B DT 19 ? ? 127.54 119.70 7.84 1.20 Y 164 1 "O5'" B DT 19 ? ? P B DT 19 ? ? OP2 B DT 19 ? ? 126.93 110.70 16.23 1.20 N 165 1 "O4'" B DT 19 ? ? "C4'" B DT 19 ? ? "C3'" B DT 19 ? ? 101.40 104.50 -3.10 0.40 N 166 1 "C1'" B DT 19 ? ? "O4'" B DT 19 ? ? "C4'" B DT 19 ? ? 102.17 110.10 -7.93 1.00 N 167 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 100.12 108.00 -7.88 0.70 N 168 1 C6 B DT 19 ? ? N1 B DT 19 ? ? C2 B DT 19 ? ? 118.30 121.30 -3.00 0.50 N 169 1 C2 B DT 19 ? ? N3 B DT 19 ? ? C4 B DT 19 ? ? 121.82 127.20 -5.38 0.60 N 170 1 N3 B DT 19 ? ? C4 B DT 19 ? ? C5 B DT 19 ? ? 120.97 115.20 5.77 0.60 N 171 1 N3 B DT 19 ? ? C4 B DT 19 ? ? O4 B DT 19 ? ? 106.72 119.90 -13.18 0.60 N 172 1 C5 B DT 19 ? ? C4 B DT 19 ? ? O4 B DT 19 ? ? 132.31 124.90 7.41 0.70 N 173 1 "O3'" B DT 19 ? ? P B DG 20 ? ? "O5'" B DG 20 ? ? 117.12 104.00 13.12 1.90 Y 174 1 "O3'" B DT 19 ? ? P B DG 20 ? ? OP1 B DG 20 ? ? 91.35 105.20 -13.85 2.20 Y 175 1 OP1 B DG 20 ? ? P B DG 20 ? ? OP2 B DG 20 ? ? 130.62 119.60 11.02 1.50 N 176 1 "O5'" B DG 20 ? ? P B DG 20 ? ? OP1 B DG 20 ? ? 98.64 105.70 -7.06 0.90 N 177 1 P B DG 20 ? ? "O5'" B DG 20 ? ? "C5'" B DG 20 ? ? 135.93 120.90 15.03 1.60 N 178 1 N7 B DG 20 ? ? C8 B DG 20 ? ? N9 B DG 20 ? ? 116.94 113.10 3.84 0.50 N 179 1 C8 B DG 20 ? ? N9 B DG 20 ? ? C4 B DG 20 ? ? 99.77 106.40 -6.63 0.40 N 180 1 N9 B DG 20 ? ? C4 B DG 20 ? ? C5 B DG 20 ? ? 109.90 105.40 4.50 0.40 N 181 1 N3 B DG 20 ? ? C4 B DG 20 ? ? N9 B DG 20 ? ? 121.09 126.00 -4.91 0.60 N 182 1 N3 B DG 20 ? ? C2 B DG 20 ? ? N2 B DG 20 ? ? 112.89 119.90 -7.01 0.70 N # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 126D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.200 -0.146 -0.135 -8.846 -6.994 -2.402 1 A_DC1:DG20_B A 1 ? B 20 ? 19 1 1 A DA 2 1_555 B DT 9 1_555 0.177 -0.135 0.089 -5.863 -10.973 3.018 2 A_DA2:DT19_B A 2 ? B 19 ? 20 1 1 A DT 3 1_555 B DA 8 1_555 -0.647 -0.129 0.174 2.203 -5.785 -6.622 3 A_DT3:DA18_B A 3 ? B 18 ? 20 1 1 A DG 4 1_555 B DC 7 1_555 -0.402 -0.108 -0.088 0.249 -12.099 0.216 4 A_DG4:DC17_B A 4 ? B 17 ? 19 1 1 A DG 5 1_555 B DC 6 1_555 0.062 -0.280 0.493 5.064 -22.551 0.836 5 A_DG5:DC16_B A 5 ? B 16 ? 19 1 1 A DC 6 1_555 B DG 5 1_555 0.161 0.044 -0.037 -4.163 -16.275 3.469 6 A_DC6:DG15_B A 6 ? B 15 ? 19 1 1 A DC 7 1_555 B DG 4 1_555 -0.121 -0.300 0.115 -2.326 -8.637 -4.494 7 A_DC7:DG14_B A 7 ? B 14 ? 19 1 1 A DA 8 1_555 B DT 3 1_555 0.280 -0.039 0.026 4.320 -14.871 -0.811 8 A_DA8:DT13_B A 8 ? B 13 ? 20 1 1 A DT 9 1_555 B DA 2 1_555 0.053 -0.132 -0.216 1.024 -11.255 2.952 9 A_DT9:DA12_B A 9 ? B 12 ? 20 1 1 A DG 10 1_555 B DC 1 1_555 0.097 -0.384 -0.255 3.462 -11.867 -0.237 10 A_DG10:DC11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DA 2 1_555 B DT 9 1_555 -0.153 1.072 3.290 -2.932 8.111 32.771 0.471 -0.233 3.450 14.075 5.088 33.857 1 AA_DC1DA2:DT19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DA 2 1_555 B DT 9 1_555 A DT 3 1_555 B DA 8 1_555 -0.426 0.027 3.211 -0.937 0.600 26.328 -0.099 0.687 3.224 1.316 2.057 26.351 2 AA_DA2DT3:DA18DT19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DT 3 1_555 B DA 8 1_555 A DG 4 1_555 B DC 7 1_555 0.081 2.497 3.519 3.078 -5.329 50.612 3.288 0.128 3.257 -6.207 -3.586 50.960 3 AA_DT3DG4:DC17DA18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DG 4 1_555 B DC 7 1_555 A DG 5 1_555 B DC 6 1_555 0.518 0.586 3.245 -6.308 6.694 33.473 -0.041 -1.834 3.154 11.358 10.703 34.679 4 AA_DG4DG5:DC16DC17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DG 5 1_555 B DC 6 1_555 A DC 6 1_555 B DG 5 1_555 -0.173 -0.177 3.509 3.800 5.329 32.376 -1.275 0.992 3.395 9.438 -6.729 33.014 5 AA_DG5DC6:DG15DC16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DC 6 1_555 B DG 5 1_555 A DC 7 1_555 B DG 4 1_555 -0.549 0.569 3.354 0.149 9.344 28.229 -0.960 1.105 3.363 18.528 -0.296 29.706 6 AA_DC6DC7:DG14DG15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DC 7 1_555 B DG 4 1_555 A DA 8 1_555 B DT 3 1_555 0.234 2.886 3.107 2.357 -8.252 51.220 3.790 -0.127 2.651 -9.469 -2.704 51.886 7 AA_DC7DA8:DT13DG14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DA 8 1_555 B DT 3 1_555 A DT 9 1_555 B DA 2 1_555 0.468 -0.190 3.398 1.814 6.023 26.897 -1.920 -0.523 3.302 12.728 -3.834 27.609 8 AA_DA8DT9:DA12DT13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DT 9 1_555 B DA 2 1_555 A DG 10 1_555 B DC 1 1_555 0.239 0.698 3.381 -0.739 9.043 36.394 -0.170 -0.475 3.445 14.209 1.162 37.471 9 AA_DT9DG10:DC11DA12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _atom_sites.entry_id 126D _atom_sites.fract_transf_matrix[1][1] 0.027322 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023535 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028827 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_