data_157D # _entry.id 157D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 157D pdb_0000157d 10.2210/pdb157d/pdb RCSB ARL048 ? ? WWPDB D_1000170131 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-05-31 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 157D _pdbx_database_status.recvd_initial_deposition_date 1994-02-01 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Leonard, G.A.' 1 'McAuley-Hecht, K.E.' 2 'Ebel, S.' 3 'Lough, D.M.' 4 'Brown, T.' 5 'Hunter, W.N.' 6 # _citation.id primary _citation.title 'Crystal and molecular structure of r(CGCGAAUUAGCG): an RNA duplex containing two G(anti).A(anti) base pairs.' _citation.journal_abbrev Structure _citation.journal_volume 2 _citation.page_first 483 _citation.page_last 494 _citation.year 1994 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7922026 _citation.pdbx_database_id_DOI '10.1016/S0969-2126(00)00049-6' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Leonard, G.A.' 1 ? primary 'McAuley-Hecht, K.E.' 2 ? primary 'Ebel, S.' 3 ? primary 'Lough, D.M.' 4 ? primary 'Brown, T.' 5 ? primary 'Hunter, W.N.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*AP*GP*CP*G)-3') ; 3851.360 2 ? ? ? ? 2 water nat water 18.015 97 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CGCGAAUUAGCG _entity_poly.pdbx_seq_one_letter_code_can CGCGAAUUAGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 C n 1 4 G n 1 5 A n 1 6 A n 1 7 U n 1 8 U n 1 9 A n 1 10 G n 1 11 C n 1 12 G n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 A 6 6 6 A A A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n A 1 12 G 12 12 12 G G A . n B 1 1 C 1 13 13 C C B . n B 1 2 G 2 14 14 G G B . n B 1 3 C 3 15 15 C C B . n B 1 4 G 4 16 16 G G B . n B 1 5 A 5 17 17 A A B . n B 1 6 A 6 18 18 A A B . n B 1 7 U 7 19 19 U U B . n B 1 8 U 8 20 20 U U B . n B 1 9 A 9 21 21 A A B . n B 1 10 G 10 22 22 G G B . n B 1 11 C 11 23 23 C C B . n B 1 12 G 12 24 24 G G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 25 25 HOH HOH A . C 2 HOH 2 26 26 HOH HOH A . C 2 HOH 3 31 31 HOH HOH A . C 2 HOH 4 33 33 HOH HOH A . C 2 HOH 5 42 42 HOH HOH A . C 2 HOH 6 43 43 HOH HOH A . C 2 HOH 7 44 44 HOH HOH A . C 2 HOH 8 45 45 HOH HOH A . C 2 HOH 9 46 46 HOH HOH A . C 2 HOH 10 47 47 HOH HOH A . C 2 HOH 11 48 48 HOH HOH A . C 2 HOH 12 49 49 HOH HOH A . C 2 HOH 13 50 50 HOH HOH A . C 2 HOH 14 51 51 HOH HOH A . C 2 HOH 15 52 52 HOH HOH A . C 2 HOH 16 53 53 HOH HOH A . C 2 HOH 17 56 56 HOH HOH A . C 2 HOH 18 61 61 HOH HOH A . C 2 HOH 19 62 62 HOH HOH A . C 2 HOH 20 70 70 HOH HOH A . C 2 HOH 21 75 75 HOH HOH A . C 2 HOH 22 76 76 HOH HOH A . C 2 HOH 23 77 77 HOH HOH A . C 2 HOH 24 78 78 HOH HOH A . C 2 HOH 25 80 80 HOH HOH A . C 2 HOH 26 81 81 HOH HOH A . C 2 HOH 27 82 82 HOH HOH A . C 2 HOH 28 83 83 HOH HOH A . C 2 HOH 29 84 84 HOH HOH A . C 2 HOH 30 85 85 HOH HOH A . C 2 HOH 31 86 86 HOH HOH A . C 2 HOH 32 87 87 HOH HOH A . C 2 HOH 33 88 88 HOH HOH A . C 2 HOH 34 89 89 HOH HOH A . C 2 HOH 35 91 91 HOH HOH A . C 2 HOH 36 94 94 HOH HOH A . C 2 HOH 37 96 96 HOH HOH A . C 2 HOH 38 98 98 HOH HOH A . C 2 HOH 39 99 99 HOH HOH A . C 2 HOH 40 100 100 HOH HOH A . C 2 HOH 41 103 103 HOH HOH A . C 2 HOH 42 104 104 HOH HOH A . C 2 HOH 43 105 105 HOH HOH A . C 2 HOH 44 106 106 HOH HOH A . C 2 HOH 45 107 107 HOH HOH A . C 2 HOH 46 111 111 HOH HOH A . C 2 HOH 47 112 112 HOH HOH A . C 2 HOH 48 113 113 HOH HOH A . C 2 HOH 49 114 114 HOH HOH A . C 2 HOH 50 116 116 HOH HOH A . C 2 HOH 51 117 117 HOH HOH A . C 2 HOH 52 120 120 HOH HOH A . C 2 HOH 53 121 121 HOH HOH A . D 2 HOH 1 27 27 HOH HOH B . D 2 HOH 2 28 28 HOH HOH B . D 2 HOH 3 29 29 HOH HOH B . D 2 HOH 4 30 30 HOH HOH B . D 2 HOH 5 32 32 HOH HOH B . D 2 HOH 6 34 34 HOH HOH B . D 2 HOH 7 35 35 HOH HOH B . D 2 HOH 8 36 36 HOH HOH B . D 2 HOH 9 37 37 HOH HOH B . D 2 HOH 10 38 38 HOH HOH B . D 2 HOH 11 39 39 HOH HOH B . D 2 HOH 12 40 40 HOH HOH B . D 2 HOH 13 41 41 HOH HOH B . D 2 HOH 14 54 54 HOH HOH B . D 2 HOH 15 55 55 HOH HOH B . D 2 HOH 16 57 57 HOH HOH B . D 2 HOH 17 58 58 HOH HOH B . D 2 HOH 18 59 59 HOH HOH B . D 2 HOH 19 60 60 HOH HOH B . D 2 HOH 20 63 63 HOH HOH B . D 2 HOH 21 64 64 HOH HOH B . D 2 HOH 22 65 65 HOH HOH B . D 2 HOH 23 66 66 HOH HOH B . D 2 HOH 24 67 67 HOH HOH B . D 2 HOH 25 68 68 HOH HOH B . D 2 HOH 26 69 69 HOH HOH B . D 2 HOH 27 71 71 HOH HOH B . D 2 HOH 28 72 72 HOH HOH B . D 2 HOH 29 73 73 HOH HOH B . D 2 HOH 30 74 74 HOH HOH B . D 2 HOH 31 79 79 HOH HOH B . D 2 HOH 32 90 90 HOH HOH B . D 2 HOH 33 92 92 HOH HOH B . D 2 HOH 34 93 93 HOH HOH B . D 2 HOH 35 95 95 HOH HOH B . D 2 HOH 36 97 97 HOH HOH B . D 2 HOH 37 101 101 HOH HOH B . D 2 HOH 38 102 102 HOH HOH B . D 2 HOH 39 108 108 HOH HOH B . D 2 HOH 40 109 109 HOH HOH B . D 2 HOH 41 110 110 HOH HOH B . D 2 HOH 42 115 115 HOH HOH B . D 2 HOH 43 118 118 HOH HOH B . D 2 HOH 44 119 119 HOH HOH B . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 157D _cell.length_a 41.690 _cell.length_b 34.620 _cell.length_c 32.130 _cell.angle_alpha 90.00 _cell.angle_beta 127.60 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 157D _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # _exptl.entry_id 157D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.38 _exptl_crystal.density_percent_sol 48.43 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_details 'pH 6.50, VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 MGCL2 ? ? ? 1 5 1 SPERMINE_HCL ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 297.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 157D _reflns.observed_criterion_sigma_I 1.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 1.800 _reflns.number_obs 3863 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 157D _refine.ls_number_reflns_obs 3147 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 7.000 _refine.ls_d_res_high 1.800 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1900000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 510 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 97 _refine_hist.number_atoms_total 607 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 7.000 # _database_PDB_matrix.entry_id 157D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 157D _struct.title 'CRYSTAL AND MOLECULAR STRUCTURE OF R(CGCGAAUUAGCG): AN RNA DUPLEX CONTAINING TWO G(ANTI).A(ANTI) BASE-PAIRS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 157D _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'A-RNA, DOUBLE HELIX, MISMATCHED, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 157D _struct_ref.pdbx_db_accession 157D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 157D A 1 ? 12 ? 157D 1 ? 12 ? 1 12 2 1 157D B 1 ? 12 ? 157D 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 1 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 1 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 1 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 2 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 2 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 2 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 3 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 3 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 3 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 B A 9 N1 ? ? A G 4 B A 21 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 B A 9 N6 ? ? A G 4 B A 21 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 5 B U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 5 B U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 6 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 6 B U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 6 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 6 B U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 6 N1 ? ? A U 7 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 6 N6 ? ? A U 7 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 8 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 8 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 9 N1 ? ? ? 1_555 B G 4 N1 ? ? A A 9 B G 16 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog21 hydrog ? ? A A 9 N6 ? ? ? 1_555 B G 4 O6 ? ? A A 9 B G 16 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog22 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 11 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 11 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 11 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A U 8 ? ? "C4'" A U 8 ? ? 1.464 1.508 -0.044 0.007 N 2 1 "C5'" B A 18 ? ? "C4'" B A 18 ? ? 1.462 1.508 -0.046 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C2 A C 1 ? ? N3 A C 1 ? ? C4 A C 1 ? ? 123.63 119.90 3.73 0.50 N 2 1 N3 A C 1 ? ? C4 A C 1 ? ? C5 A C 1 ? ? 118.75 121.90 -3.15 0.40 N 3 1 N1 A C 1 ? ? C2 A C 1 ? ? O2 A C 1 ? ? 122.89 118.90 3.99 0.60 N 4 1 "O5'" A G 2 ? ? "C5'" A G 2 ? ? "C4'" A G 2 ? ? 102.88 109.40 -6.52 0.80 N 5 1 C5 A G 2 ? ? C6 A G 2 ? ? N1 A G 2 ? ? 114.57 111.50 3.07 0.50 N 6 1 OP1 A C 3 ? ? P A C 3 ? ? OP2 A C 3 ? ? 110.59 119.60 -9.01 1.50 N 7 1 C2 A C 3 ? ? N3 A C 3 ? ? C4 A C 3 ? ? 123.19 119.90 3.29 0.50 N 8 1 N3 A C 3 ? ? C4 A C 3 ? ? C5 A C 3 ? ? 119.04 121.90 -2.86 0.40 N 9 1 C6 A G 4 ? ? N1 A G 4 ? ? C2 A G 4 ? ? 121.49 125.10 -3.61 0.60 N 10 1 C5 A G 4 ? ? C6 A G 4 ? ? N1 A G 4 ? ? 114.83 111.50 3.33 0.50 N 11 1 "O5'" A A 5 ? ? "C5'" A A 5 ? ? "C4'" A A 5 ? ? 103.38 109.40 -6.02 0.80 N 12 1 C6 A A 5 ? ? N1 A A 5 ? ? C2 A A 5 ? ? 122.57 118.60 3.97 0.60 N 13 1 C5 A A 5 ? ? C6 A A 5 ? ? N1 A A 5 ? ? 114.19 117.70 -3.51 0.50 N 14 1 C5 A A 6 ? ? C6 A A 6 ? ? N1 A A 6 ? ? 114.43 117.70 -3.27 0.50 N 15 1 "O5'" A U 7 ? ? P A U 7 ? ? OP1 A U 7 ? ? 118.74 110.70 8.04 1.20 N 16 1 "O5'" A U 7 ? ? "C5'" A U 7 ? ? "C4'" A U 7 ? ? 101.95 109.40 -7.45 0.80 N 17 1 C2 A U 7 ? ? N3 A U 7 ? ? C4 A U 7 ? ? 122.26 127.00 -4.74 0.60 N 18 1 N3 A U 7 ? ? C4 A U 7 ? ? C5 A U 7 ? ? 119.59 114.60 4.99 0.60 N 19 1 "C5'" A U 8 ? ? "C4'" A U 8 ? ? "O4'" A U 8 ? ? 117.48 109.80 7.68 0.90 N 20 1 N3 A U 8 ? ? C4 A U 8 ? ? C5 A U 8 ? ? 119.44 114.60 4.84 0.60 N 21 1 N9 A A 9 ? ? "C1'" A A 9 ? ? "C2'" A A 9 ? ? 105.36 112.00 -6.64 1.10 N 22 1 "O4'" A A 9 ? ? "C1'" A A 9 ? ? N9 A A 9 ? ? 114.88 108.50 6.38 0.70 N 23 1 C6 A A 9 ? ? N1 A A 9 ? ? C2 A A 9 ? ? 123.24 118.60 4.64 0.60 N 24 1 N1 A A 9 ? ? C2 A A 9 ? ? N3 A A 9 ? ? 124.38 129.30 -4.92 0.50 N 25 1 "O5'" A G 10 ? ? "C5'" A G 10 ? ? "C4'" A G 10 ? ? 103.52 109.40 -5.88 0.80 N 26 1 C6 A G 10 ? ? N1 A G 10 ? ? C2 A G 10 ? ? 119.76 125.10 -5.34 0.60 N 27 1 C5 A G 10 ? ? C6 A G 10 ? ? N1 A G 10 ? ? 115.61 111.50 4.11 0.50 N 28 1 N3 A G 10 ? ? C2 A G 10 ? ? N2 A G 10 ? ? 115.24 119.90 -4.66 0.70 N 29 1 C5 A G 10 ? ? C6 A G 10 ? ? O6 A G 10 ? ? 124.94 128.60 -3.66 0.60 N 30 1 N3 A C 11 ? ? C4 A C 11 ? ? C5 A C 11 ? ? 119.48 121.90 -2.42 0.40 N 31 1 "O5'" A G 12 ? ? "C5'" A G 12 ? ? "C4'" A G 12 ? ? 104.40 109.40 -5.00 0.80 N 32 1 C5 A G 12 ? ? C6 A G 12 ? ? N1 A G 12 ? ? 115.13 111.50 3.63 0.50 N 33 1 N1 A G 12 ? ? C6 A G 12 ? ? O6 A G 12 ? ? 116.06 119.90 -3.84 0.60 N 34 1 "O5'" B C 13 ? ? "C5'" B C 13 ? ? "C4'" B C 13 ? ? 103.01 109.40 -6.39 0.80 N 35 1 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 115.39 108.50 6.89 0.70 N 36 1 C2 B C 13 ? ? N3 B C 13 ? ? C4 B C 13 ? ? 123.58 119.90 3.68 0.50 N 37 1 N3 B C 13 ? ? C4 B C 13 ? ? C5 B C 13 ? ? 118.74 121.90 -3.16 0.40 N 38 1 C5 B G 14 ? ? C6 B G 14 ? ? N1 B G 14 ? ? 114.52 111.50 3.02 0.50 N 39 1 C2 B C 15 ? ? N3 B C 15 ? ? C4 B C 15 ? ? 123.94 119.90 4.04 0.50 N 40 1 N3 B C 15 ? ? C4 B C 15 ? ? C5 B C 15 ? ? 118.39 121.90 -3.51 0.40 N 41 1 N3 B C 15 ? ? C4 B C 15 ? ? N4 B C 15 ? ? 122.29 118.00 4.29 0.70 N 42 1 "O5'" B G 16 ? ? "C5'" B G 16 ? ? "C4'" B G 16 ? ? 102.18 109.40 -7.22 0.80 N 43 1 "C4'" B G 16 ? ? "C3'" B G 16 ? ? "C2'" B G 16 ? ? 96.54 102.60 -6.06 1.00 N 44 1 N1 B G 16 ? ? C6 B G 16 ? ? O6 B G 16 ? ? 116.12 119.90 -3.78 0.60 N 45 1 "O5'" B A 17 ? ? "C5'" B A 17 ? ? "C4'" B A 17 ? ? 104.50 109.40 -4.90 0.80 N 46 1 C6 B A 17 ? ? N1 B A 17 ? ? C2 B A 17 ? ? 124.06 118.60 5.46 0.60 N 47 1 N1 B A 17 ? ? C2 B A 17 ? ? N3 B A 17 ? ? 125.99 129.30 -3.31 0.50 N 48 1 C5 B A 17 ? ? C6 B A 17 ? ? N1 B A 17 ? ? 113.78 117.70 -3.92 0.50 N 49 1 "O5'" B U 19 ? ? P B U 19 ? ? OP1 B U 19 ? ? 118.44 110.70 7.74 1.20 N 50 1 C2 B U 19 ? ? N3 B U 19 ? ? C4 B U 19 ? ? 122.33 127.00 -4.67 0.60 N 51 1 N3 B U 19 ? ? C4 B U 19 ? ? C5 B U 19 ? ? 119.31 114.60 4.71 0.60 N 52 1 "O5'" B U 20 ? ? "C5'" B U 20 ? ? "C4'" B U 20 ? ? 131.31 111.70 19.61 1.90 N 53 1 "C5'" B U 20 ? ? "C4'" B U 20 ? ? "O4'" B U 20 ? ? 97.86 109.10 -11.24 1.20 N 54 1 C2 B U 20 ? ? N3 B U 20 ? ? C4 B U 20 ? ? 122.93 127.00 -4.07 0.60 N 55 1 N3 B U 20 ? ? C4 B U 20 ? ? C5 B U 20 ? ? 119.50 114.60 4.90 0.60 N 56 1 N1 B A 21 ? ? C2 B A 21 ? ? N3 B A 21 ? ? 126.26 129.30 -3.04 0.50 N 57 1 "C3'" B A 21 ? ? "O3'" B A 21 ? ? P B G 22 ? ? 130.17 119.70 10.47 1.20 Y 58 1 C6 B G 22 ? ? N1 B G 22 ? ? C2 B G 22 ? ? 120.86 125.10 -4.24 0.60 N 59 1 C5 B G 22 ? ? C6 B G 22 ? ? N1 B G 22 ? ? 114.95 111.50 3.45 0.50 N 60 1 C2 B C 23 ? ? N3 B C 23 ? ? C4 B C 23 ? ? 123.18 119.90 3.28 0.50 N 61 1 N3 B C 23 ? ? C4 B C 23 ? ? C5 B C 23 ? ? 119.34 121.90 -2.56 0.40 N 62 1 "O5'" B G 24 ? ? "C5'" B G 24 ? ? "C4'" B G 24 ? ? 103.30 109.40 -6.10 0.80 N # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 U OP3 O N N 114 U P P N N 115 U OP1 O N N 116 U OP2 O N N 117 U "O5'" O N N 118 U "C5'" C N N 119 U "C4'" C N R 120 U "O4'" O N N 121 U "C3'" C N S 122 U "O3'" O N N 123 U "C2'" C N R 124 U "O2'" O N N 125 U "C1'" C N R 126 U N1 N N N 127 U C2 C N N 128 U O2 O N N 129 U N3 N N N 130 U C4 C N N 131 U O4 O N N 132 U C5 C N N 133 U C6 C N N 134 U HOP3 H N N 135 U HOP2 H N N 136 U "H5'" H N N 137 U "H5''" H N N 138 U "H4'" H N N 139 U "H3'" H N N 140 U "HO3'" H N N 141 U "H2'" H N N 142 U "HO2'" H N N 143 U "H1'" H N N 144 U H3 H N N 145 U H5 H N N 146 U H6 H N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 157D 'double helix' 157D 'a-form double helix' 157D 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 12 1_555 0.345 -0.278 0.174 3.171 -12.376 3.126 1 A_C1:G24_B A 1 ? B 24 ? 19 1 1 A G 2 1_555 B C 11 1_555 -0.108 -0.195 0.032 -4.914 -20.237 2.464 2 A_G2:C23_B A 2 ? B 23 ? 19 1 1 A C 3 1_555 B G 10 1_555 0.138 -0.273 0.406 -8.073 -8.739 -1.981 3 A_C3:G22_B A 3 ? B 22 ? 19 1 1 A G 4 1_555 B A 9 1_555 -0.354 1.319 -0.238 3.918 -9.239 -7.508 4 A_G4:A21_B A 4 ? B 21 ? 8 ? 1 A A 5 1_555 B U 8 1_555 0.390 -0.305 0.386 7.975 -12.657 -8.341 5 A_A5:U20_B A 5 ? B 20 ? 20 1 1 A A 6 1_555 B U 7 1_555 0.281 -0.535 -0.043 2.349 -27.133 0.881 6 A_A6:U19_B A 6 ? B 19 ? 20 1 1 A U 7 1_555 B A 6 1_555 -0.366 -0.481 -0.011 -4.573 -23.609 -1.764 7 A_U7:A18_B A 7 ? B 18 ? 20 1 1 A U 8 1_555 B A 5 1_555 -0.048 -0.216 0.232 -5.378 -17.906 -11.809 8 A_U8:A17_B A 8 ? B 17 ? 20 1 1 A A 9 1_555 B G 4 1_555 -0.562 1.443 -0.345 -2.651 -10.641 -22.919 9 A_A9:G16_B A 9 ? B 16 ? 8 1 1 A G 10 1_555 B C 3 1_555 -0.237 -0.144 0.243 5.380 -6.630 -1.583 10 A_G10:C15_B A 10 ? B 15 ? 19 1 1 A C 11 1_555 B G 2 1_555 0.350 -0.235 -0.022 5.699 -22.843 4.245 11 A_C11:G14_B A 11 ? B 14 ? 19 1 1 A G 12 1_555 B C 1 1_555 0.056 -0.255 0.189 -3.351 -13.428 -4.307 12 A_G12:C13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 12 1_555 A G 2 1_555 B C 11 1_555 -0.523 -1.885 3.290 -1.619 12.734 30.262 -5.303 0.675 2.351 23.128 2.940 32.813 1 AA_C1G2:C23G24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A G 2 1_555 B C 11 1_555 A C 3 1_555 B G 10 1_555 -0.432 -1.329 3.420 -4.345 5.039 33.446 -3.088 0.029 3.221 8.650 7.459 34.083 2 AA_G2C3:G22C23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A C 3 1_555 B G 10 1_555 A G 4 1_555 B A 9 1_555 -0.551 -1.292 2.960 3.025 10.678 23.137 -5.365 1.937 2.081 24.869 -7.046 25.628 3 AA_C3G4:A21G22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A G 4 1_555 B A 9 1_555 A A 5 1_555 B U 8 1_555 -0.023 -1.593 3.113 -6.495 10.308 32.714 -4.042 -0.832 2.473 17.560 11.065 34.851 4 AA_G4A5:U20A21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A A 5 1_555 B U 8 1_555 A A 6 1_555 B U 7 1_555 0.323 -0.816 3.533 5.323 8.975 36.121 -2.510 0.234 3.259 14.115 -8.372 37.550 5 AA_A5A6:U19U20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A A 6 1_555 B U 7 1_555 A U 7 1_555 B A 6 1_555 -0.103 -1.264 3.368 -1.175 10.592 27.009 -4.769 -0.043 2.693 21.639 2.400 28.999 6 AA_A6U7:A18U19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A U 7 1_555 B A 6 1_555 A U 8 1_555 B A 5 1_555 -0.427 -1.462 3.335 -2.702 10.299 40.583 -3.089 0.323 2.917 14.549 3.817 41.900 7 AA_U7U8:A17A18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A U 8 1_555 B A 5 1_555 A A 9 1_555 B G 4 1_555 -0.272 -1.711 3.245 5.669 10.671 24.051 -6.090 1.865 2.184 23.782 -12.636 26.875 8 AA_U8A9:G16A17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A A 9 1_555 B G 4 1_555 A G 10 1_555 B C 3 1_555 1.449 -1.318 3.173 -3.365 9.537 27.846 -4.360 -3.464 2.412 19.041 6.717 29.592 9 AA_A9G10:C15G16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A G 10 1_555 B C 3 1_555 A C 11 1_555 B G 2 1_555 0.697 -1.310 3.276 5.068 8.040 36.839 -3.011 -0.441 3.002 12.470 -7.860 38.004 10 AA_G10C11:G14C15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A C 11 1_555 B G 2 1_555 A G 12 1_555 B C 1 1_555 0.035 -1.572 3.319 0.223 14.143 36.363 -3.957 -0.027 2.556 21.681 -0.342 38.931 11 AA_C11G12:C13G14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 157D _atom_sites.fract_transf_matrix[1][1] 0.023987 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.018472 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028885 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.039283 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_