data_185D # _entry.id 185D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 185D WWPDB D_1000170189 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 193D unspecified 'SOLUTION STRUCTURE OF D(ACACGTGT) COMPLEXED WITH QUINOMYCIN UK-6305' PDB 1PFE unspecified 'CRYSTAL STRUCTURE OF D(GCGTACG) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P6322' PDB 1VS2 unspecified 'CRYSTAL STRUCTURE OF D(GCGTACGC) COMPLEXED WITH TRIOSIN A' PDB 1XVK unspecified 'CRYSTAL STRUCTURE OF D(GCGTACGC) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P632' PDB 1XVN unspecified 'CRYSTAL STRUCTURE OF D(ACGTACGT) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P632' PDB 1XVR unspecified 'CRYSTAL STRUCTURE OF D(CGTACG) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP C21' PDB 2ADW unspecified 'CRYSTAL STRUCTURE OF D(ACGTACGT) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P42212' PDB 2DA8 unspecified 'SOLUTION STRUCTURE OF D(GATATC) COMPLEXED WITH A MODIFIED TRIOSTIN A AT POSITIONS 4 AND 8' PDB 3GO3 unspecified 'CRYSTAL STRUCTURE OF D(ACGTACGT) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P41212' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 185D _pdbx_database_status.recvd_initial_deposition_date 1994-08-10 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Addess, K.J.' 1 'Feigon, J.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of a 1:1 Complex between Triostin a and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-Mecys3,N-Mecys7]Tandem-[D(Gatatc)]2 Complex. ; Biochemistry 33 12386 ? 1994 BICHAW US 0006-2960 0033 ? 7918461 10.1021/BI00207A005 1 'Solution Structure of a Complex between [N-Mecys3,N-Mecys7]Tandem and [D(Gatatc)]2' Biochemistry 32 2498 ? 1993 BICHAW US 0006-2960 0033 ? 8448108 10.1021/BI00061A006 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Addess, K.J.' 1 primary 'Feigon, J.' 2 1 'Addess, K.J.' 3 1 'Sinsheimer, J.S.' 4 1 'Feigon, J.' 5 # _cell.entry_id 185D _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 185D _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'TRIOSTIN A' 794.982 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*AP*CP*GP*TP*C)-3') ; 1809.217 2 ? ? ? ? 3 non-polymer syn 2-CARBOXYQUINOXALINE 174.156 2 ? ? ? ? # _entity_keywords.entity_id 1 _entity_keywords.text 'DEOXYRIBONUCLEIC ACID' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes '(DSN)A(NCY)(MVA)(DSN)A(NCY)(MVA)' SAXVSAXV A ? 2 polydeoxyribonucleotide no no '(DG)(DA)(DC)(DG)(DT)(DC)' GACGTC C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DSN n 1 2 ALA n 1 3 NCY n 1 4 MVA n 1 5 DSN n 1 6 ALA n 1 7 NCY n 1 8 MVA n 2 1 DG n 2 2 DA n 2 3 DC n 2 4 DG n 2 5 DT n 2 6 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific STREPTOMYCINEAE _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1931 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 NOR NOR01129 1 ? ? NOR01129 ? 2 PDB 185D 2 ? ? 185D ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 185D A 1 ? 8 ? NOR01129 1 ? 8 ? 1 8 2 2 185D C 1 ? 6 ? 185D 1 ? 6 ? 11 16 3 2 185D D 1 ? 6 ? 185D 1 ? 6 ? 17 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DSN 'D-peptide linking' . D-SERINE ? 'C3 H7 N O3' 105.093 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173 NCY 'L-peptide linking' . N-METHYLCYSTEINE ? 'C4 H9 N O2 S' 135.185 QUI non-polymer . 2-CARBOXYQUINOXALINE ? 'C9 H6 N2 O2' 174.156 # _pdbx_nmr_refine.entry_id 185D _pdbx_nmr_refine.method 'DISTANCE GEOMETRY, MOLECULAR DYNAMICS' _pdbx_nmr_refine.details ;NUMBER OF ATOMS PRESENT IN ENTRY. NUMBER OF PROTEIN ATOMS 328 NUMBER OF NUCLEIC ACID ATOMS 48 NUMBER OF SOLVENT ATOMS 240 NUMBER OF HETEROGEN ATOMS 40 AVERAGE PAIRWISE RMSD BOND DISTANCES FOR HEAVY ATOM POSITIONS FOR 5 STRUCTURES: 1.37 ANGSTROMS. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 185D _pdbx_nmr_details.text ;TRIOSTIN A CONTAINS TWO PLANAR AROMATIC QUINOXALINE RINGS THAT ARE COVALENTLY ATTACHED TO A CYCLIC OCTADEPSIPEPTIDE RING REPRESENTED BY CHAINS A AND B IN THIS ENTRY. THERE IS A DISULFIDE BRIDGE LINKING CYS A 4 TO CYS B 9. BOTH CYS AND VAL RESIDUES CONTAIN METHYLATED AMIDE NITROGENS; THE TWO D-SER RESIDUES ARE AMIDE BONDED TO THE TWO QUINOXALINE RINGS. ; # _pdbx_nmr_ensemble.entry_id 185D _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 5 _pdbx_nmr_ensemble.conformer_selection_criteria ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name X-PLOR _pdbx_nmr_software.version ? _pdbx_nmr_software.authors BRUNGER _pdbx_nmr_software.ordinal 1 # _exptl.entry_id 185D _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 185D _struct.title ;SEQUENCE SPECIFICITY OF QUINOXALINE ANTIBIOTICS. 1. SOLUTION STRUCTURE OF A 1:1 COMPLEX BETWEEN TRIOSTIN A AND [D(GACGTC)]2 AND COMPARISON WITH THE SOLUTION STRUCTURE OF THE [N-MECYS3, N-MECYS7]TANDEM-[D(GATATC)]2 COMPLEX ; _struct.pdbx_descriptor 'TRIOSTIN A' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 185D _struct_keywords.pdbx_keywords DNA/ANTIBIOTIC _struct_keywords.text 'BISINTERCALATOR, DEPSIPEPTIDE, QUINOXALINE, ANTIBIOTIC, ANTITUMOR, DNA-ANTIBIOTIC COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A NCY 3 SG ? ? ? 1_555 A NCY 7 SG ? ? A NCY 3 A NCY 7 1_555 ? ? ? ? ? ? ? 2.021 ? covale1 covale ? ? D QUI . C ? ? ? 1_555 A DSN 1 N ? ? A QUI 0 A DSN 1 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A DSN 1 C ? ? ? 1_555 A ALA 2 N ? ? A DSN 1 A ALA 2 1_555 ? ? ? ? ? ? ? 1.305 ? covale3 covale ? ? A DSN 1 OG ? ? ? 1_555 A MVA 8 C ? ? A DSN 1 A MVA 8 1_555 ? ? ? ? ? ? ? 1.331 ? covale4 covale ? ? A ALA 2 C ? ? ? 1_555 A NCY 3 N ? ? A ALA 2 A NCY 3 1_555 ? ? ? ? ? ? ? 1.323 ? covale5 covale ? ? A NCY 3 C ? ? ? 1_555 A MVA 4 N ? ? A NCY 3 A MVA 4 1_555 ? ? ? ? ? ? ? 1.329 ? covale6 covale ? ? A MVA 4 C ? ? ? 1_555 A DSN 5 OG ? ? A MVA 4 A DSN 5 1_555 ? ? ? ? ? ? ? 1.333 ? covale7 covale ? ? A DSN 5 C ? ? ? 1_555 A ALA 6 N ? ? A DSN 5 A ALA 6 1_555 ? ? ? ? ? ? ? 1.303 ? covale8 covale ? ? A DSN 5 N ? ? ? 1_555 E QUI . C ? ? A DSN 5 A QUI 9 1_555 ? ? ? ? ? ? ? 1.327 ? covale9 covale ? ? A ALA 6 C ? ? ? 1_555 A NCY 7 N ? ? A ALA 6 A NCY 7 1_555 ? ? ? ? ? ? ? 1.326 ? covale10 covale ? ? A NCY 7 C ? ? ? 1_555 A MVA 8 N ? ? A NCY 7 A MVA 8 1_555 ? ? ? ? ? ? ? 1.327 ? hydrog1 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DT 5 N3 ? ? C DG 11 D DT 21 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? hydrog2 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 6 N3 ? ? C DG 11 D DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 6 O2 ? ? C DG 11 D DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 6 N4 ? ? C DG 11 D DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B DA 2 N1 ? ? ? 1_555 C DT 5 N3 ? ? C DA 12 D DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B DA 2 N6 ? ? ? 1_555 C DT 5 O4 ? ? C DA 12 D DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 4 N1 ? ? C DC 13 D DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 4 O6 ? ? C DC 13 D DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 4 N2 ? ? C DC 13 D DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 3 N3 ? ? C DG 14 D DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 3 O2 ? ? C DG 14 D DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 3 N4 ? ? C DG 14 D DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DG 1 O6 ? ? C DT 15 D DG 17 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? hydrog14 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 2 N1 ? ? C DT 15 D DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 2 N6 ? ? C DT 15 D DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B DC 6 N3 ? ? ? 1_555 C DG 1 N1 ? ? C DC 16 D DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B DC 6 N4 ? ? ? 1_555 C DG 1 O6 ? ? C DC 16 D DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B DC 6 O2 ? ? ? 1_555 C DG 1 N2 ? ? C DC 16 D DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR CHAIN A OF TRIOSTIN A' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DA B 2 ? DA C 12 . ? 1_555 ? 2 AC1 8 DC B 3 ? DC C 13 . ? 1_555 ? 3 AC1 8 DG B 4 ? DG C 14 . ? 1_555 ? 4 AC1 8 DT B 5 ? DT C 15 . ? 1_555 ? 5 AC1 8 DA C 2 ? DA D 18 . ? 1_555 ? 6 AC1 8 DC C 3 ? DC D 19 . ? 1_555 ? 7 AC1 8 DG C 4 ? DG D 20 . ? 1_555 ? 8 AC1 8 DT C 5 ? DT D 21 . ? 1_555 ? # _database_PDB_matrix.entry_id 185D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 185D _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_sites_footnote.id _atom_sites_footnote.text 1 'SER A 2 AND SER B 7 OF EACH MODEL ARE D-SERINE.' 2 'CYS A 4 AND VAL A 5 OF EACH MODEL ARE METHYLATED. CYS B 9 AND VAL B 10 OF EACH MODEL ARE METHYLATED.' # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DSN 1 1 1 DSN DSN A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 NCY 3 3 3 NCY NCY A . n A 1 4 MVA 4 4 4 MVA MVA A . n A 1 5 DSN 5 5 5 DSN DSN A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 NCY 7 7 7 NCY NCY A . n A 1 8 MVA 8 8 8 MVA MVA A . n B 2 1 DG 1 11 11 DG DG C . n B 2 2 DA 2 12 12 DA DA C . n B 2 3 DC 3 13 13 DC DC C . n B 2 4 DG 4 14 14 DG DG C . n B 2 5 DT 5 15 15 DT DT C . n B 2 6 DC 6 16 16 DC DC C . n C 2 1 DG 1 17 17 DG DG D . n C 2 2 DA 2 18 18 DA DA D . n C 2 3 DC 3 19 19 DC DC D . n C 2 4 DG 4 20 20 DG DG D . n C 2 5 DT 5 21 21 DT DT D . n C 2 6 DC 6 22 22 DC DC D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 QUI 1 0 0 QUI QUI A . E 3 QUI 1 9 9 QUI QUI A . # _pdbx_molecule_features.prd_id PRD_000488 _pdbx_molecule_features.name 'TRIOSTIN A' _pdbx_molecule_features.type 'Cyclic depsipeptide' _pdbx_molecule_features.class Anticancer _pdbx_molecule_features.details ;TRIOSTIN IS A BICYCLIC OCTADEPSIPEPTIDE. BICYCLIZATION IS ACHIEVED BY LINKING THE N- AND THE C- TERMINI, AND A DISULPHIDE BOND BETWEEN RESIDUES 3 AND 7. THE TWO QUINOXALINE CHROMOPHORES ARE LINKED TO THE D-SERINE RESIDUES, RESIDUES 1 AND 5. ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000488 A 1 PRD_000488 D 1 PRD_000488 E # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2080 ? 1 MORE -3 ? 1 'SSA (A^2)' 2840 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1995-02-07 2 'Structure model' 1 1 2011-06-14 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2013-02-27 6 'Structure model' 1 5 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' Other 9 6 'Structure model' Advisory 10 6 'Structure model' 'Derived calculations' 11 6 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' pdbx_database_status 2 6 'Structure model' pdbx_struct_assembly 3 6 'Structure model' pdbx_validate_polymer_linkage # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_pdbx_database_status.process_site' 2 6 'Structure model' '_pdbx_struct_assembly.method_details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 X-PLOR phasing . ? 3 # _pdbx_entry_details.entry_id 185D _pdbx_entry_details.compound_details ;TRIOSTIN IS A BICYCLIC OCTADEPSIPEPTIDE, A MEMBER OF THE QUINOXALINE CLASS OF ANTIBIOTICS. HERE, TRIOSTIN IS REPRESENTED BY GROUPING TOGETHER THE SEQUENCE (SEQRES) AND THE TWO LIGANDS (HET) QUI ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 C DT 15 ? ? C7 C DT 15 ? ? 1.535 1.496 0.039 0.006 N 2 1 C5 D DT 21 ? ? C7 D DT 21 ? ? 1.539 1.496 0.043 0.006 N 3 2 C5 C DT 15 ? ? C7 C DT 15 ? ? 1.538 1.496 0.042 0.006 N 4 3 C5 C DT 15 ? ? C7 C DT 15 ? ? 1.534 1.496 0.038 0.006 N 5 4 C5 C DT 15 ? ? C7 C DT 15 ? ? 1.532 1.496 0.036 0.006 N 6 4 C5 D DT 21 ? ? C7 D DT 21 ? ? 1.532 1.496 0.036 0.006 N 7 5 C5 C DT 15 ? ? C7 C DT 15 ? ? 1.536 1.496 0.040 0.006 N 8 5 C5 D DT 21 ? ? C7 D DT 21 ? ? 1.533 1.496 0.037 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DG 11 ? ? "C1'" C DG 11 ? ? N9 C DG 11 ? ? 110.24 108.30 1.94 0.30 N 2 1 N7 C DG 11 ? ? C8 C DG 11 ? ? N9 C DG 11 ? ? 116.38 113.10 3.28 0.50 N 3 1 "C1'" C DC 13 ? ? "O4'" C DC 13 ? ? "C4'" C DC 13 ? ? 103.89 110.10 -6.21 1.00 N 4 1 N1 C DC 13 ? ? C2 C DC 13 ? ? O2 C DC 13 ? ? 122.67 118.90 3.77 0.60 N 5 1 "O4'" C DG 14 ? ? "C1'" C DG 14 ? ? "C2'" C DG 14 ? ? 100.40 105.90 -5.50 0.80 N 6 1 N7 C DG 14 ? ? C8 C DG 14 ? ? N9 C DG 14 ? ? 116.33 113.10 3.23 0.50 N 7 1 "C1'" D DG 17 ? ? "O4'" D DG 17 ? ? "C4'" D DG 17 ? ? 103.60 110.10 -6.50 1.00 N 8 1 N7 D DG 17 ? ? C8 D DG 17 ? ? N9 D DG 17 ? ? 116.36 113.10 3.26 0.50 N 9 1 "C1'" D DC 19 ? ? "O4'" D DC 19 ? ? "C4'" D DC 19 ? ? 103.28 110.10 -6.82 1.00 N 10 1 "O4'" D DC 19 ? ? "C1'" D DC 19 ? ? N1 D DC 19 ? ? 111.02 108.30 2.72 0.30 N 11 1 N1 D DC 19 ? ? C2 D DC 19 ? ? O2 D DC 19 ? ? 122.63 118.90 3.73 0.60 N 12 1 N7 D DG 20 ? ? C8 D DG 20 ? ? N9 D DG 20 ? ? 116.24 113.10 3.14 0.50 N 13 1 "O4'" D DT 21 ? ? "C1'" D DT 21 ? ? "C2'" D DT 21 ? ? 101.02 105.90 -4.88 0.80 N 14 1 "O4'" D DC 22 ? ? "C1'" D DC 22 ? ? N1 D DC 22 ? ? 111.07 108.30 2.77 0.30 N 15 2 "O4'" C DG 11 ? ? "C1'" C DG 11 ? ? "C2'" C DG 11 ? ? 100.59 105.90 -5.31 0.80 N 16 2 "O4'" C DG 11 ? ? "C1'" C DG 11 ? ? N9 C DG 11 ? ? 112.83 108.30 4.53 0.30 N 17 2 N7 C DG 11 ? ? C8 C DG 11 ? ? N9 C DG 11 ? ? 116.17 113.10 3.07 0.50 N 18 2 "O4'" C DC 13 ? ? "C1'" C DC 13 ? ? N1 C DC 13 ? ? 110.13 108.30 1.83 0.30 N 19 2 "O4'" C DG 14 ? ? "C1'" C DG 14 ? ? "C2'" C DG 14 ? ? 100.04 105.90 -5.86 0.80 N 20 2 "O4'" C DG 14 ? ? "C1'" C DG 14 ? ? N9 C DG 14 ? ? 112.21 108.30 3.91 0.30 N 21 2 N7 C DG 14 ? ? C8 C DG 14 ? ? N9 C DG 14 ? ? 116.37 113.10 3.27 0.50 N 22 2 "O4'" C DC 16 ? ? "C1'" C DC 16 ? ? N1 C DC 16 ? ? 111.66 108.30 3.36 0.30 N 23 2 N7 D DG 17 ? ? C8 D DG 17 ? ? N9 D DG 17 ? ? 116.57 113.10 3.47 0.50 N 24 2 "C1'" D DG 20 ? ? "O4'" D DG 20 ? ? "C4'" D DG 20 ? ? 103.92 110.10 -6.18 1.00 N 25 2 "O4'" D DG 20 ? ? "C1'" D DG 20 ? ? "C2'" D DG 20 ? ? 99.11 105.90 -6.79 0.80 N 26 2 "O4'" D DG 20 ? ? "C1'" D DG 20 ? ? N9 D DG 20 ? ? 112.68 108.30 4.38 0.30 N 27 2 N7 D DG 20 ? ? C8 D DG 20 ? ? N9 D DG 20 ? ? 116.37 113.10 3.27 0.50 N 28 3 "O4'" C DG 11 ? ? "C1'" C DG 11 ? ? N9 C DG 11 ? ? 110.31 108.30 2.01 0.30 N 29 3 N7 C DG 11 ? ? C8 C DG 11 ? ? N9 C DG 11 ? ? 116.45 113.10 3.35 0.50 N 30 3 "O4'" C DA 12 ? ? "C1'" C DA 12 ? ? N9 C DA 12 ? ? 110.85 108.30 2.55 0.30 N 31 3 "O4'" C DC 13 ? ? "C1'" C DC 13 ? ? N1 C DC 13 ? ? 111.80 108.30 3.50 0.30 N 32 3 "O4'" C DG 14 ? ? "C1'" C DG 14 ? ? N9 C DG 14 ? ? 110.46 108.30 2.16 0.30 N 33 3 N7 C DG 14 ? ? C8 C DG 14 ? ? N9 C DG 14 ? ? 116.29 113.10 3.19 0.50 N 34 3 "O4'" C DT 15 ? ? "C1'" C DT 15 ? ? "C2'" C DT 15 ? ? 99.15 105.90 -6.75 0.80 N 35 3 "O4'" C DC 16 ? ? "C1'" C DC 16 ? ? N1 C DC 16 ? ? 111.41 108.30 3.11 0.30 N 36 3 N7 D DG 17 ? ? C8 D DG 17 ? ? N9 D DG 17 ? ? 116.45 113.10 3.35 0.50 N 37 3 "C3'" D DG 17 ? ? "O3'" D DG 17 ? ? P D DA 18 ? ? 128.92 119.70 9.22 1.20 Y 38 3 "O4'" D DA 18 ? ? "C1'" D DA 18 ? ? "C2'" D DA 18 ? ? 100.99 105.90 -4.91 0.80 N 39 3 "C4'" D DC 19 ? ? "C3'" D DC 19 ? ? "C2'" D DC 19 ? ? 97.63 102.20 -4.57 0.70 N 40 3 "O4'" D DC 19 ? ? "C1'" D DC 19 ? ? N1 D DC 19 ? ? 112.34 108.30 4.04 0.30 N 41 3 "O4'" D DG 20 ? ? "C1'" D DG 20 ? ? "C2'" D DG 20 ? ? 100.36 105.90 -5.54 0.80 N 42 3 "O4'" D DG 20 ? ? "C1'" D DG 20 ? ? N9 D DG 20 ? ? 111.93 108.30 3.63 0.30 N 43 3 N7 D DG 20 ? ? C8 D DG 20 ? ? N9 D DG 20 ? ? 116.33 113.10 3.23 0.50 N 44 3 "O4'" D DC 22 ? ? "C1'" D DC 22 ? ? N1 D DC 22 ? ? 112.41 108.30 4.11 0.30 N 45 4 "O4'" C DG 11 ? ? "C1'" C DG 11 ? ? "C2'" C DG 11 ? ? 100.52 105.90 -5.38 0.80 N 46 4 "O4'" C DG 11 ? ? "C1'" C DG 11 ? ? N9 C DG 11 ? ? 112.71 108.30 4.41 0.30 N 47 4 N7 C DG 11 ? ? C8 C DG 11 ? ? N9 C DG 11 ? ? 116.40 113.10 3.30 0.50 N 48 4 "C4'" C DC 13 ? ? "C3'" C DC 13 ? ? "C2'" C DC 13 ? ? 97.03 102.20 -5.17 0.70 N 49 4 "O4'" C DC 13 ? ? "C1'" C DC 13 ? ? N1 C DC 13 ? ? 113.45 108.30 5.15 0.30 N 50 4 "O4'" C DG 14 ? ? "C1'" C DG 14 ? ? "C2'" C DG 14 ? ? 100.52 105.90 -5.38 0.80 N 51 4 N7 C DG 14 ? ? C8 C DG 14 ? ? N9 C DG 14 ? ? 116.39 113.10 3.29 0.50 N 52 4 "C4'" C DC 16 ? ? "C3'" C DC 16 ? ? "C2'" C DC 16 ? ? 97.49 102.20 -4.71 0.70 N 53 4 "O4'" C DC 16 ? ? "C1'" C DC 16 ? ? N1 C DC 16 ? ? 114.00 108.30 5.70 0.30 N 54 4 "O4'" D DG 17 ? ? "C1'" D DG 17 ? ? N9 D DG 17 ? ? 111.15 108.30 2.85 0.30 N 55 4 N7 D DG 17 ? ? C8 D DG 17 ? ? N9 D DG 17 ? ? 116.64 113.10 3.54 0.50 N 56 4 "O4'" D DA 18 ? ? "C1'" D DA 18 ? ? N9 D DA 18 ? ? 112.54 108.30 4.24 0.30 N 57 4 "O4'" D DC 19 ? ? "C1'" D DC 19 ? ? N1 D DC 19 ? ? 110.33 108.30 2.03 0.30 N 58 4 "O4'" D DG 20 ? ? "C1'" D DG 20 ? ? "C2'" D DG 20 ? ? 100.16 105.90 -5.74 0.80 N 59 4 "O4'" D DG 20 ? ? "C1'" D DG 20 ? ? N9 D DG 20 ? ? 111.97 108.30 3.67 0.30 N 60 4 N7 D DG 20 ? ? C8 D DG 20 ? ? N9 D DG 20 ? ? 116.48 113.10 3.38 0.50 N 61 5 N7 C DG 11 ? ? C8 C DG 11 ? ? N9 C DG 11 ? ? 116.39 113.10 3.29 0.50 N 62 5 "O4'" C DC 13 ? ? "C1'" C DC 13 ? ? N1 C DC 13 ? ? 111.88 108.30 3.58 0.30 N 63 5 "O4'" C DG 14 ? ? "C1'" C DG 14 ? ? "C2'" C DG 14 ? ? 100.67 105.90 -5.23 0.80 N 64 5 "O4'" C DG 14 ? ? "C1'" C DG 14 ? ? N9 C DG 14 ? ? 111.17 108.30 2.87 0.30 N 65 5 N7 C DG 14 ? ? C8 C DG 14 ? ? N9 C DG 14 ? ? 116.13 113.10 3.03 0.50 N 66 5 "O4'" C DC 16 ? ? "C1'" C DC 16 ? ? N1 C DC 16 ? ? 111.01 108.30 2.71 0.30 N 67 5 "O4'" D DG 17 ? ? "C1'" D DG 17 ? ? "C2'" D DG 17 ? ? 100.96 105.90 -4.94 0.80 N 68 5 N7 D DG 17 ? ? C8 D DG 17 ? ? N9 D DG 17 ? ? 116.54 113.10 3.44 0.50 N 69 5 "C4'" D DC 19 ? ? "C3'" D DC 19 ? ? "C2'" D DC 19 ? ? 97.04 102.20 -5.16 0.70 N 70 5 "O4'" D DC 19 ? ? "C1'" D DC 19 ? ? N1 D DC 19 ? ? 110.54 108.30 2.24 0.30 N 71 5 "O4'" D DG 20 ? ? "C1'" D DG 20 ? ? "C2'" D DG 20 ? ? 100.29 105.90 -5.61 0.80 N 72 5 "O4'" D DG 20 ? ? "C1'" D DG 20 ? ? N9 D DG 20 ? ? 110.83 108.30 2.53 0.30 N 73 5 N7 D DG 20 ? ? C8 D DG 20 ? ? N9 D DG 20 ? ? 116.32 113.10 3.22 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 5 NCY A 3 ? ? -98.73 -61.43 2 5 NCY A 7 ? ? -90.57 -62.43 # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 4 C A MVA 4 ? ? N A DSN 5 ? ? 2.81 2 5 C A MVA 4 ? ? N A DSN 5 ? ? 2.88 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 185D 'double helix' 185D 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 6 1_555 -0.890 -0.526 0.397 -14.370 -3.264 -0.495 1 C_DG11:DC22_D C 11 ? D 22 ? 19 1 1 B DA 2 1_555 C DT 5 1_555 -0.015 -0.315 0.872 9.008 8.738 4.495 2 C_DA12:DT21_D C 12 ? D 21 ? 20 1 1 B DC 3 1_555 C DG 4 1_555 -0.057 -0.287 0.983 -24.430 -0.995 -5.477 3 C_DC13:DG20_D C 13 ? D 20 ? 19 1 1 B DG 4 1_555 C DC 3 1_555 0.112 -0.214 0.844 25.113 -1.344 -6.480 4 C_DG14:DC19_D C 14 ? D 19 ? 19 1 1 B DT 5 1_555 C DA 2 1_555 0.116 -0.481 1.196 -11.378 7.795 8.624 5 C_DT15:DA18_D C 15 ? D 18 ? 20 1 1 B DC 6 1_555 C DG 1 1_555 0.136 -0.607 1.241 -2.720 -17.550 -11.682 6 C_DC16:DG17_D C 16 ? D 17 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 6 1_555 B DA 2 1_555 C DT 5 1_555 0.508 -0.035 2.653 -4.114 -4.047 44.009 0.256 -0.980 2.591 -5.373 5.462 44.367 1 CC_DG11DA12:DT21DC22_DD C 11 ? D 22 ? C 12 ? D 21 ? 1 B DA 2 1_555 C DT 5 1_555 B DC 3 1_555 C DG 4 1_555 0.547 0.688 7.338 9.392 2.955 25.296 -0.240 4.263 7.114 6.445 -20.484 27.116 2 CC_DA12DC13:DG20DT21_DD C 12 ? D 21 ? C 13 ? D 20 ? 1 B DC 3 1_555 C DG 4 1_555 B DG 4 1_555 C DC 3 1_555 -0.376 0.733 2.301 -0.055 2.581 0.914 -40.350 6.690 1.466 70.488 1.498 2.739 3 CC_DC13DG14:DC19DG20_DD C 13 ? D 20 ? C 14 ? D 19 ? 1 B DT 5 1_555 C DA 2 1_555 B DC 6 1_555 C DG 1 1_555 -1.675 -0.102 2.987 -3.985 -4.314 42.439 0.263 1.921 3.120 -5.926 5.474 42.825 4 CC_DT15DC16:DG17DA18_DD C 15 ? D 18 ? C 16 ? D 17 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 2-CARBOXYQUINOXALINE _pdbx_entity_nonpoly.comp_id QUI #