data_199D # _entry.id 199D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 199D pdb_0000199d 10.2210/pdb199d/pdb WWPDB D_1000170219 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1995-02-07 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 5 'Structure model' 1 4 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Source and taxonomy' 8 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' entity 10 5 'Structure model' pdbx_entity_src_syn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 8 5 'Structure model' '_entity.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 199D _pdbx_database_status.recvd_initial_deposition_date 1994-12-01 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sastry, M.' 1 'Fiala, R.' 2 'Lipman, R.' 3 'Tomasz, M.' 4 'Patel, D.J.' 5 # _citation.id primary _citation.title 'Solution structure of the monoalkylated mitomycin C-DNA complex.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 247 _citation.page_first 338 _citation.page_last 359 _citation.year 1995 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7707379 _citation.pdbx_database_id_DOI 10.1006/jmbi.1994.0143 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sastry, M.' 1 ? primary 'Fiala, R.' 2 ? primary 'Lipman, R.' 3 ? primary 'Tomasz, M.' 4 ? primary 'Patel, D.J.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*(DI)P*CP*AP*CP*GP*TP*CP*(DI)P*T)-3') ; 2701.770 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*CP*GP*AP*CP*GP*TP*GP*C)-3') ; 2740.812 1 ? ? ? ? 3 non-polymer syn 'CARBAMIC ACID 2,6-DIAMINO-5-METHYL-4,7-DIOXO-2,3,4,7-TETRAHYDRO-1H-3A-AZA-CYCLOPENTA[A]INDEN-8-YLMETHYL ESTER' 304.301 1 ? ? ? 'CHEMICALLY SYNTHESIZED' # loop_ _entity_keywords.entity_id _entity_keywords.text 1 'DEOXYRIBONUCLEIC ACID' 2 'DEOXYRIBONUCLEIC ACID' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DI)(DC)(DA)(DC)(DG)(DT)(DC)(DI)(DT)' ICACGTCIT A ? 2 polydeoxyribonucleotide no no '(DA)(DC)(DG)(DA)(DC)(DG)(DT)(DG)(DC)' ACGACGTGC B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'CARBAMIC ACID 2,6-DIAMINO-5-METHYL-4,7-DIOXO-2,3,4,7-TETRAHYDRO-1H-3A-AZA-CYCLOPENTA[A]INDEN-8-YLMETHYL ESTER' _pdbx_entity_nonpoly.comp_id MOC # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DI n 1 2 DC n 1 3 DA n 1 4 DC n 1 5 DG n 1 6 DT n 1 7 DC n 1 8 DI n 1 9 DT n 2 1 DA n 2 2 DC n 2 3 DG n 2 4 DA n 2 5 DC n 2 6 DG n 2 7 DT n 2 8 DG n 2 9 DC n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'CHEMICALLY SYNTHESIZED' 2 1 sample ? ? ? ? ? 'CHEMICALLY SYNTHESIZED' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DI 'DNA linking' y "2'-DEOXYINOSINE-5'-MONOPHOSPHATE" ? 'C10 H13 N4 O7 P' 332.207 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 MOC non-polymer . 'CARBAMIC ACID 2,6-DIAMINO-5-METHYL-4,7-DIOXO-2,3,4,7-TETRAHYDRO-1H-3A-AZA-CYCLOPENTA[A]INDEN-8-YLMETHYL ESTER' ? 'C14 H16 N4 O4' 304.301 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DI 1 1 1 DI DI A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DI 8 8 8 DI DI A . n A 1 9 DT 9 9 9 DT T A . n B 2 1 DA 1 10 10 DA A B . n B 2 2 DC 2 11 11 DC C B . n B 2 3 DG 3 12 12 DG G B . n B 2 4 DA 4 13 13 DA A B . n B 2 5 DC 5 14 14 DC C B . n B 2 6 DG 6 15 15 DG G B . n B 2 7 DT 7 16 16 DT T B . n B 2 8 DG 8 17 17 DG G B . n B 2 9 DC 9 18 18 DC C B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id MOC _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 19 _pdbx_nonpoly_scheme.auth_seq_num 19 _pdbx_nonpoly_scheme.pdb_mon_id MOC _pdbx_nonpoly_scheme.auth_mon_id MOC _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 X-PLOR phasing . ? 3 # _cell.entry_id 199D _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 199D _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 199D _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 199D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 199D _struct.title 'Solution structure of the monoalkylated mitomycin c-DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 199D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, MITOMYCIN, DOUBLE HELIX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 199D 199D ? ? ? 2 2 PDB 199D 199D ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 199D A 1 ? 9 ? 199D 1 ? 9 ? 1 9 2 2 199D B 1 ? 9 ? 199D 10 ? 18 ? 10 18 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A DG 5 N2 ? ? ? 1_555 C MOC . C1 ? ? A DG 5 A MOC 19 1_555 ? ? ? ? ? ? ? 1.431 ? ? hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 2 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 2 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 2 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 3 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 3 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 4 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 4 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 4 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 5 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 5 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 5 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 6 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 6 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 7 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 7 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 7 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 9 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 9 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MOC _struct_site.pdbx_auth_seq_id 19 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE MOC A 19' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DG A 5 ? DG A 5 . ? 1_555 ? 2 AC1 6 DT A 6 ? DT A 6 . ? 1_555 ? 3 AC1 6 DC A 7 ? DC A 7 . ? 1_555 ? 4 AC1 6 DC B 5 ? DC B 14 . ? 1_555 ? 5 AC1 6 DG B 6 ? DG B 15 . ? 1_555 ? 6 AC1 6 DT B 7 ? DT B 16 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 A DT 6 ? ? C7 A DT 6 ? ? 1.536 1.496 0.040 0.006 N 2 1 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.534 1.496 0.038 0.006 N 3 2 C5 A DT 6 ? ? C7 A DT 6 ? ? 1.538 1.496 0.042 0.006 N 4 2 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.535 1.496 0.039 0.006 N 5 3 C5 A DT 6 ? ? C7 A DT 6 ? ? 1.540 1.496 0.044 0.006 N 6 3 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.538 1.496 0.042 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 109.62 106.00 3.62 0.60 N 2 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? "C2'" A DC 2 ? ? 100.95 105.90 -4.95 0.80 N 3 1 "C3'" A DC 2 ? ? "O3'" A DC 2 ? ? P A DA 3 ? ? 130.09 119.70 10.39 1.20 Y 4 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 102.76 108.00 -5.24 0.70 N 5 1 "C3'" A DA 3 ? ? "O3'" A DA 3 ? ? P A DC 4 ? ? 128.82 119.70 9.12 1.20 Y 6 1 "C4'" A DC 4 ? ? "C3'" A DC 4 ? ? "C2'" A DC 4 ? ? 97.71 102.20 -4.49 0.70 N 7 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? "C2'" A DC 4 ? ? 100.28 105.90 -5.62 0.80 N 8 1 N1 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 122.69 118.90 3.79 0.60 N 9 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? "C2'" A DG 5 ? ? 100.55 105.90 -5.35 0.80 N 10 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.90 108.30 2.60 0.30 N 11 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 113.77 108.30 5.47 0.30 N 12 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.86 108.30 2.56 0.30 N 13 1 "C1'" B DA 10 ? ? "O4'" B DA 10 ? ? "C4'" B DA 10 ? ? 100.97 110.10 -9.13 1.00 N 14 1 "O4'" B DA 10 ? ? "C1'" B DA 10 ? ? "C2'" B DA 10 ? ? 99.85 105.90 -6.05 0.80 N 15 1 "O4'" B DA 10 ? ? "C1'" B DA 10 ? ? N9 B DA 10 ? ? 114.43 108.30 6.13 0.30 N 16 1 "C5'" B DG 12 ? ? "C4'" B DG 12 ? ? "O4'" B DG 12 ? ? 116.54 109.80 6.74 1.10 N 17 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? "C2'" B DG 12 ? ? 100.28 105.90 -5.62 0.80 N 18 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 114.76 108.30 6.46 0.30 N 19 1 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 103.72 108.00 -4.28 0.70 N 20 1 N1 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 122.56 118.90 3.66 0.60 N 21 1 "C5'" B DG 15 ? ? "C4'" B DG 15 ? ? "O4'" B DG 15 ? ? 116.91 109.80 7.11 1.10 N 22 1 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? "C2'" B DG 15 ? ? 99.03 105.90 -6.87 0.80 N 23 1 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? N9 B DG 15 ? ? 110.80 108.30 2.50 0.30 N 24 1 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? "C2'" B DT 16 ? ? 101.10 105.90 -4.80 0.80 N 25 1 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 116.98 108.30 8.68 0.30 N 26 1 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 113.95 108.30 5.65 0.30 N 27 1 "C4'" B DC 18 ? ? "C3'" B DC 18 ? ? "C2'" B DC 18 ? ? 97.09 102.20 -5.11 0.70 N 28 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 113.76 108.30 5.46 0.30 N 29 2 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 109.70 106.00 3.70 0.60 N 30 2 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? "C2'" A DC 2 ? ? 100.60 105.90 -5.30 0.80 N 31 2 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? "C2'" A DC 4 ? ? 98.00 105.90 -7.90 0.80 N 32 2 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 112.83 108.30 4.53 0.30 N 33 2 N1 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 122.57 118.90 3.67 0.60 N 34 2 "C4'" A DG 5 ? ? "C3'" A DG 5 ? ? "C2'" A DG 5 ? ? 97.94 102.20 -4.26 0.70 N 35 2 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? "C2'" A DG 5 ? ? 100.73 105.90 -5.17 0.80 N 36 2 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 113.34 108.30 5.04 0.30 N 37 2 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 111.98 108.30 3.68 0.30 N 38 2 "C1'" B DA 10 ? ? "O4'" B DA 10 ? ? "C4'" B DA 10 ? ? 100.77 110.10 -9.33 1.00 N 39 2 "O4'" B DA 10 ? ? "C1'" B DA 10 ? ? "C2'" B DA 10 ? ? 100.96 105.90 -4.94 0.80 N 40 2 "O4'" B DA 10 ? ? "C1'" B DA 10 ? ? N9 B DA 10 ? ? 114.69 108.30 6.39 0.30 N 41 2 "C3'" B DA 10 ? ? "O3'" B DA 10 ? ? P B DC 11 ? ? 128.47 119.70 8.77 1.20 Y 42 2 "C5'" B DG 12 ? ? "C4'" B DG 12 ? ? "O4'" B DG 12 ? ? 118.07 109.80 8.27 1.10 N 43 2 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? "C2'" B DG 12 ? ? 100.46 105.90 -5.44 0.80 N 44 2 "C3'" B DG 12 ? ? "O3'" B DG 12 ? ? P B DA 13 ? ? 130.24 119.70 10.54 1.20 Y 45 2 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? "C2'" B DG 15 ? ? 99.71 105.90 -6.19 0.80 N 46 2 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? N9 B DG 15 ? ? 110.40 108.30 2.10 0.30 N 47 2 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 120.42 108.30 12.12 0.30 N 48 2 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 112.89 108.30 4.59 0.30 N 49 2 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 110.43 108.30 2.13 0.30 N 50 3 "C3'" A DI 1 ? ? "O3'" A DI 1 ? ? P A DC 2 ? ? 126.91 119.70 7.21 1.20 Y 51 3 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? "C2'" A DC 2 ? ? 99.81 105.90 -6.09 0.80 N 52 3 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 122.94 118.90 4.04 0.60 N 53 3 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 103.41 108.00 -4.59 0.70 N 54 3 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? "C2'" A DC 4 ? ? 97.81 105.90 -8.09 0.80 N 55 3 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 113.22 108.30 4.92 0.30 N 56 3 N1 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 122.63 118.90 3.73 0.60 N 57 3 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.80 108.30 2.50 0.30 N 58 3 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? "C2'" A DT 6 ? ? 99.58 105.90 -6.32 0.80 N 59 3 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.75 108.30 3.45 0.30 N 60 3 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.47 108.30 2.17 0.30 N 61 3 "C1'" A DT 9 ? ? "O4'" A DT 9 ? ? "C4'" A DT 9 ? ? 103.75 110.10 -6.35 1.00 N 62 3 "C1'" B DA 10 ? ? "O4'" B DA 10 ? ? "C4'" B DA 10 ? ? 100.91 110.10 -9.19 1.00 N 63 3 "O4'" B DA 10 ? ? "C1'" B DA 10 ? ? "C2'" B DA 10 ? ? 100.01 105.90 -5.89 0.80 N 64 3 "O4'" B DA 10 ? ? "C1'" B DA 10 ? ? N9 B DA 10 ? ? 113.81 108.30 5.51 0.30 N 65 3 "C3'" B DA 10 ? ? "O3'" B DA 10 ? ? P B DC 11 ? ? 127.11 119.70 7.41 1.20 Y 66 3 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? "C2'" B DG 12 ? ? 100.89 105.90 -5.01 0.80 N 67 3 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 116.22 108.30 7.92 0.30 N 68 3 N1 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 122.55 118.90 3.65 0.60 N 69 3 "C3'" B DC 14 ? ? "O3'" B DC 14 ? ? P B DG 15 ? ? 127.24 119.70 7.54 1.20 Y 70 3 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? "C2'" B DG 15 ? ? 100.12 105.90 -5.78 0.80 N 71 3 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? N9 B DG 15 ? ? 110.31 108.30 2.01 0.30 N 72 3 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 119.96 108.30 11.66 0.30 N 73 3 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 113.24 108.30 4.94 0.30 N 74 3 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 112.52 108.30 4.22 0.30 N # _pdbx_nmr_ensemble.entry_id 199D _pdbx_nmr_ensemble.conformers_calculated_total_number 3 _pdbx_nmr_ensemble.conformers_submitted_total_number 3 _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_refine.entry_id 199D _pdbx_nmr_refine.method 'MOLECULAR DYNAMICS, MATRIX RELAXATION' _pdbx_nmr_refine.details ;THREE STARTING STRUCTURES WERE OBTAINED BY MANUALLY DOCKING MITOMYCIN C ON A FORM AND B FORM DNA. THESE WERE SUBSEQUENTLY REFINED BY DISTANCE-RESTRAINED MOLECULAR DYNAMICS USING A SET OF INTER-PROTON DISTANCES DERIVED FROM NMR DATA. THE THREE DISTANCE-REFINED STRUCTURES WERE REFINED FURTHER USING RELAXATION-MATRIX BASED NOE INTENSITY-RESTRAINED MOLECULAR DYNAMICS. THE FINAL THREE STRUCTURES WERE OBTAINED BY TAKING THE AVERAGE COORDINATES OF THE LAST 1.5 PS OF THE DYNAMICS DURING RELAXATION MATRIX REFINEMENT AND MINIMIZED. THE R(1/6) VALUE WAS USED TO REFINE THE STRUCTURE DURING RELAXATION MATRIX REFINEMENT. THE SUMMATIONS RUN THROUGH OBSERVED, QUANTIFIABLE NOE CROSSPEAKS IN NOESY SPECTRA RECORDED IN D2O AND MIXING TIMES OF 30, 60, 90, 120, 200 AND 300 MS. THE R(1/6) FACTOR AND THE RMS DEVIATIONS FROM IDEAL GEOMETRY FOR THE THREE FINAL STRUCTURES ARE: MDL1 MDL2 MDL3 R(1/6) FACTOR 0.027 0.026 0.026 BOND (ANG) 0.008 0.008 0.008 ANGLE (DEG) 2.913 2.931 2.949 IMPROPER (DEG) 0.361 0.393 0.372 ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_software.name X-PLOR _pdbx_nmr_software.version ? _pdbx_nmr_software.classification refinement _pdbx_nmr_software.authors BRUNGER _pdbx_nmr_software.ordinal 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DI OP3 O N N 108 DI P P N N 109 DI OP1 O N N 110 DI OP2 O N N 111 DI "O5'" O N N 112 DI "C5'" C N N 113 DI "C4'" C N R 114 DI "O4'" O N N 115 DI "C3'" C N S 116 DI "O3'" O N N 117 DI "C2'" C N N 118 DI "C1'" C N R 119 DI N9 N Y N 120 DI C8 C Y N 121 DI N7 N Y N 122 DI C5 C Y N 123 DI C6 C N N 124 DI O6 O N N 125 DI N1 N N N 126 DI C2 C N N 127 DI N3 N N N 128 DI C4 C Y N 129 DI HOP3 H N N 130 DI HOP2 H N N 131 DI "H5'" H N N 132 DI "H5''" H N N 133 DI "H4'" H N N 134 DI "H3'" H N N 135 DI "HO3'" H N N 136 DI "H2'" H N N 137 DI "H2''" H N N 138 DI "H1'" H N N 139 DI H8 H N N 140 DI H1 H N N 141 DI H2 H N N 142 DT OP3 O N N 143 DT P P N N 144 DT OP1 O N N 145 DT OP2 O N N 146 DT "O5'" O N N 147 DT "C5'" C N N 148 DT "C4'" C N R 149 DT "O4'" O N N 150 DT "C3'" C N S 151 DT "O3'" O N N 152 DT "C2'" C N N 153 DT "C1'" C N R 154 DT N1 N N N 155 DT C2 C N N 156 DT O2 O N N 157 DT N3 N N N 158 DT C4 C N N 159 DT O4 O N N 160 DT C5 C N N 161 DT C7 C N N 162 DT C6 C N N 163 DT HOP3 H N N 164 DT HOP2 H N N 165 DT "H5'" H N N 166 DT "H5''" H N N 167 DT "H4'" H N N 168 DT "H3'" H N N 169 DT "HO3'" H N N 170 DT "H2'" H N N 171 DT "H2''" H N N 172 DT "H1'" H N N 173 DT H3 H N N 174 DT H71 H N N 175 DT H72 H N N 176 DT H73 H N N 177 DT H6 H N N 178 MOC C1 C N N 179 MOC C2 C N R 180 MOC N2 N N N 181 MOC C3 C N N 182 MOC N4 N Y N 183 MOC C4A C Y N 184 MOC C5 C N N 185 MOC O5 O N N 186 MOC C6 C N N 187 MOC CM6 C N N 188 MOC C7 C N N 189 MOC N7 N N N 190 MOC C8 C N N 191 MOC O8 O N N 192 MOC C8A C Y N 193 MOC C9 C Y N 194 MOC C9A C Y N 195 MOC C10 C N N 196 MOC O10 O N N 197 MOC C11 C N N 198 MOC O11 O N N 199 MOC N12 N N N 200 MOC H11 H N N 201 MOC H12 H N N 202 MOC H2 H N N 203 MOC HN21 H N N 204 MOC HN22 H N N 205 MOC H31 H N N 206 MOC H32 H N N 207 MOC HM61 H N N 208 MOC HM62 H N N 209 MOC HM63 H N N 210 MOC HN71 H N N 211 MOC HN72 H N N 212 MOC H101 H N N 213 MOC H102 H N N 214 MOC H121 H N N 215 MOC H122 H N N 216 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DI OP3 P sing N N 113 DI OP3 HOP3 sing N N 114 DI P OP1 doub N N 115 DI P OP2 sing N N 116 DI P "O5'" sing N N 117 DI OP2 HOP2 sing N N 118 DI "O5'" "C5'" sing N N 119 DI "C5'" "C4'" sing N N 120 DI "C5'" "H5'" sing N N 121 DI "C5'" "H5''" sing N N 122 DI "C4'" "O4'" sing N N 123 DI "C4'" "C3'" sing N N 124 DI "C4'" "H4'" sing N N 125 DI "O4'" "C1'" sing N N 126 DI "C3'" "O3'" sing N N 127 DI "C3'" "C2'" sing N N 128 DI "C3'" "H3'" sing N N 129 DI "O3'" "HO3'" sing N N 130 DI "C2'" "C1'" sing N N 131 DI "C2'" "H2'" sing N N 132 DI "C2'" "H2''" sing N N 133 DI "C1'" N9 sing N N 134 DI "C1'" "H1'" sing N N 135 DI N9 C8 sing Y N 136 DI N9 C4 sing Y N 137 DI C8 N7 doub Y N 138 DI C8 H8 sing N N 139 DI N7 C5 sing Y N 140 DI C5 C6 sing N N 141 DI C5 C4 doub Y N 142 DI C6 O6 doub N N 143 DI C6 N1 sing N N 144 DI N1 C2 sing N N 145 DI N1 H1 sing N N 146 DI C2 N3 doub N N 147 DI C2 H2 sing N N 148 DI N3 C4 sing N N 149 DT OP3 P sing N N 150 DT OP3 HOP3 sing N N 151 DT P OP1 doub N N 152 DT P OP2 sing N N 153 DT P "O5'" sing N N 154 DT OP2 HOP2 sing N N 155 DT "O5'" "C5'" sing N N 156 DT "C5'" "C4'" sing N N 157 DT "C5'" "H5'" sing N N 158 DT "C5'" "H5''" sing N N 159 DT "C4'" "O4'" sing N N 160 DT "C4'" "C3'" sing N N 161 DT "C4'" "H4'" sing N N 162 DT "O4'" "C1'" sing N N 163 DT "C3'" "O3'" sing N N 164 DT "C3'" "C2'" sing N N 165 DT "C3'" "H3'" sing N N 166 DT "O3'" "HO3'" sing N N 167 DT "C2'" "C1'" sing N N 168 DT "C2'" "H2'" sing N N 169 DT "C2'" "H2''" sing N N 170 DT "C1'" N1 sing N N 171 DT "C1'" "H1'" sing N N 172 DT N1 C2 sing N N 173 DT N1 C6 sing N N 174 DT C2 O2 doub N N 175 DT C2 N3 sing N N 176 DT N3 C4 sing N N 177 DT N3 H3 sing N N 178 DT C4 O4 doub N N 179 DT C4 C5 sing N N 180 DT C5 C7 sing N N 181 DT C5 C6 doub N N 182 DT C7 H71 sing N N 183 DT C7 H72 sing N N 184 DT C7 H73 sing N N 185 DT C6 H6 sing N N 186 MOC C1 C2 sing N N 187 MOC C1 C9A sing N N 188 MOC C1 H11 sing N N 189 MOC C1 H12 sing N N 190 MOC C2 N2 sing N N 191 MOC C2 C3 sing N N 192 MOC C2 H2 sing N N 193 MOC N2 HN21 sing N N 194 MOC N2 HN22 sing N N 195 MOC C3 N4 sing N N 196 MOC C3 H31 sing N N 197 MOC C3 H32 sing N N 198 MOC N4 C4A sing Y N 199 MOC N4 C9A sing Y N 200 MOC C4A C5 sing N N 201 MOC C4A C8A doub Y N 202 MOC C5 O5 doub N N 203 MOC C5 C6 sing N N 204 MOC C6 CM6 sing N N 205 MOC C6 C7 doub N N 206 MOC CM6 HM61 sing N N 207 MOC CM6 HM62 sing N N 208 MOC CM6 HM63 sing N N 209 MOC C7 N7 sing N N 210 MOC C7 C8 sing N N 211 MOC N7 HN71 sing N N 212 MOC N7 HN72 sing N N 213 MOC C8 O8 doub N N 214 MOC C8 C8A sing N N 215 MOC C8A C9 sing Y N 216 MOC C9 C9A doub Y N 217 MOC C9 C10 sing N N 218 MOC C10 O10 sing N N 219 MOC C10 H101 sing N N 220 MOC C10 H102 sing N N 221 MOC O10 C11 sing N N 222 MOC C11 O11 doub N N 223 MOC C11 N12 sing N N 224 MOC N12 H121 sing N N 225 MOC N12 H122 sing N N 226 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 199D 'double helix' 199D 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 B DG 8 1_555 0.374 -0.335 0.423 -11.752 -10.574 -2.730 1 A_DC2:DG17_B A 2 ? B 17 ? 19 1 1 A DA 3 1_555 B DT 7 1_555 0.066 -0.247 -0.300 -6.800 -28.159 -4.971 2 A_DA3:DT16_B A 3 ? B 16 ? 20 1 1 A DC 4 1_555 B DG 6 1_555 0.777 -0.426 0.143 -4.036 -14.332 -5.442 3 A_DC4:DG15_B A 4 ? B 15 ? 19 1 1 A DG 5 1_555 B DC 5 1_555 -0.579 -0.261 -0.167 -9.539 -2.490 -1.377 4 A_DG5:DC14_B A 5 ? B 14 ? 19 1 1 A DT 6 1_555 B DA 4 1_555 0.092 -0.233 -0.125 15.817 -5.212 -1.575 5 A_DT6:DA13_B A 6 ? B 13 ? 20 1 1 A DC 7 1_555 B DG 3 1_555 0.338 -0.238 0.189 -2.978 -7.771 0.492 6 A_DC7:DG12_B A 7 ? B 12 ? 19 1 1 A DT 9 1_555 B DA 1 1_555 -0.292 -0.131 -0.043 9.396 -4.428 -6.103 7 A_DT9:DA10_B A 9 ? B 10 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 B DG 8 1_555 A DA 3 1_555 B DT 7 1_555 -0.288 -1.364 2.899 1.055 18.478 29.561 -4.466 0.606 1.758 32.512 -1.857 34.767 1 AA_DC2DA3:DT16DG17_BB A 2 ? B 17 ? A 3 ? B 16 ? 1 A DA 3 1_555 B DT 7 1_555 A DC 4 1_555 B DG 6 1_555 -0.255 -1.017 3.006 -5.212 -0.849 32.854 -1.645 -0.363 3.034 -1.488 9.141 33.264 2 AA_DA3DC4:DG15DT16_BB A 3 ? B 16 ? A 4 ? B 15 ? 1 A DC 4 1_555 B DG 6 1_555 A DG 5 1_555 B DC 5 1_555 -0.213 -1.548 2.977 1.393 11.184 24.929 -5.533 0.733 2.086 24.379 -3.036 27.321 3 AA_DC4DG5:DC14DG15_BB A 4 ? B 15 ? A 5 ? B 14 ? 1 A DG 5 1_555 B DC 5 1_555 A DT 6 1_555 B DA 4 1_555 -0.075 0.141 2.450 0.001 1.540 34.178 0.057 0.127 2.454 2.619 -0.001 34.212 4 AA_DG5DT6:DA13DC14_BB A 5 ? B 14 ? A 6 ? B 13 ? 1 A DT 6 1_555 B DA 4 1_555 A DC 7 1_555 B DG 3 1_555 -0.007 -1.006 3.484 -2.914 11.910 41.652 -2.553 -0.282 3.090 16.329 3.995 43.342 5 AA_DT6DC7:DG12DA13_BB A 6 ? B 13 ? A 7 ? B 12 ? 1 A DC 7 1_555 B DG 3 1_555 A DT 9 1_555 B DA 1 1_555 -0.397 -2.245 5.804 7.712 12.815 60.486 -3.182 0.991 5.201 12.516 -7.532 62.137 6 AA_DC7DT9:DA10DG12_BB A 7 ? B 12 ? A 9 ? B 10 ? # _atom_sites.entry_id 199D _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_