HEADER TRANSCRIPTION/DNA 04-MAR-98 1A6Y TITLE REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*(5IT) COMPND 3 P*AP*GP*GP*TP*CP*AP*G)-3'); COMPND 4 CHAIN: C; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*TP*G)-3'); COMPND 9 CHAIN: D; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: ORPHAN NUCLEAR RECEPTOR NR1D1; COMPND 13 CHAIN: A, B; COMPND 14 FRAGMENT: DNA BINDING DOMAIN CONSISTS OF RESIDUES A 101 TO A 164, B COMPND 15 101 TO B 164; COMPND 16 SYNONYM: THYROID HORMONE RECEPTOR-RELATED PROTEIN REV-ERBA-ALPHA, COMPND 17 REVERB, REVERBA ORPHAN NUCLEAR RECEPTOR, V-ERBA RELATED PROTEIN EAR- COMPND 18 1; COMPND 19 ENGINEERED: YES; COMPND 20 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS ORPHAN RECEPTOR, NUCLEAR RECEPTOR, DNA-BINDING, REVERB, REV-ERB, KEYWDS 2 TRANSCRIPTION REGULATION, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Q.ZHAO,S.KHORASANIZADEH,F.RASTINEJAD REVDAT 3 02-AUG-23 1A6Y 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1A6Y 1 VERSN REVDAT 1 21-OCT-98 1A6Y 0 JRNL AUTH Q.ZHAO,S.KHORASANIZADEH,Y.MIYOSHI,M.A.LAZAR,F.RASTINEJAD JRNL TITL STRUCTURAL ELEMENTS OF AN ORPHAN NUCLEAR RECEPTOR-DNA JRNL TITL 2 COMPLEX. JRNL REF MOL.CELL V. 1 849 1998 JRNL REFN ISSN 1097-2765 JRNL PMID 9660968 JRNL DOI 10.1016/S1097-2765(00)80084-2 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.84 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 10614 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 674 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 966 REMARK 3 BIN R VALUE (WORKING SET) : 0.2864 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 47 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1282 REMARK 3 NUCLEIC ACID ATOMS : 814 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 234 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.805 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.08 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.995 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAMXX4.CPX REMARK 3 PARAMETER FILE 2 : PARAM11X.DNA REMARK 3 PARAMETER FILE 3 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH11I.DNA REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THERE IS AN INSERT GLN 133A IN BOTH REMARK 3 CHAIN A AND B REMARK 4 REMARK 4 1A6Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000170469. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NONE REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13482 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 19.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49200 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2NLL (TR PORTION) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AND DNA COMPLEX WAS REMARK 280 CRYSTALLIZED FROM 25-30% PEG 8000, 5 MM MGCL2, 400 MM NACL2, 100 REMARK 280 MM TRIS, PH 7.5., VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 92 REMARK 465 LYS A 93 REMARK 465 LEU A 94 REMARK 465 ASN A 95 REMARK 465 GLY A 96 REMARK 465 MET A 97 REMARK 465 VAL A 98 REMARK 465 ILE A 176 REMARK 465 PRO A 177 REMARK 465 LYS A 178 REMARK 465 ARG A 179 REMARK 465 GLU A 180 REMARK 465 LYS A 181 REMARK 465 GLN A 182 REMARK 465 ARG A 183 REMARK 465 MET A 184 REMARK 465 THR B 92 REMARK 465 LYS B 93 REMARK 465 LEU B 94 REMARK 465 ASN B 95 REMARK 465 ARG B 179 REMARK 465 GLU B 180 REMARK 465 LYS B 181 REMARK 465 GLN B 182 REMARK 465 ARG B 183 REMARK 465 MET B 184 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET B 97 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DG D 640 O HOH D 720 1.96 REMARK 500 N4 DC C 609 O HOH C 778 2.10 REMARK 500 NE2 HIS A 112 O HOH A 788 2.17 REMARK 500 OP2 DT D 627 O HOH D 712 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 139 CD - CE - NZ ANGL. DEV. = -16.2 DEGREES REMARK 500 ARG B 147 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 102 21.40 -74.89 REMARK 500 CYS A 104 29.48 -148.03 REMARK 500 TYR A 113 28.17 43.04 REMARK 500 GLN A 130 34.19 -80.27 REMARK 500 ASN A 132 41.85 -99.13 REMARK 500 GLN A 133A 61.06 -113.57 REMARK 500 TYR A 134 123.80 -29.49 REMARK 500 ARG A 136 167.56 -44.11 REMARK 500 GLU A 141 19.49 40.06 REMARK 500 LEU A 162 39.14 -76.59 REMARK 500 SER A 163 -24.91 -146.51 REMARK 500 TYR B 113 19.70 47.53 REMARK 500 ILE B 133 98.57 -60.53 REMARK 500 ARG B 136 -173.68 -69.48 REMARK 500 LEU B 138 -10.02 -44.66 REMARK 500 GLN B 154 -71.96 -58.42 REMARK 500 GLN B 155 -48.69 -23.79 REMARK 500 MET B 166 108.73 -51.35 REMARK 500 ARG B 175 142.65 -18.10 REMARK 500 PRO B 177 -136.17 -68.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC C 603 0.06 SIDE CHAIN REMARK 500 DC C 611 0.07 SIDE CHAIN REMARK 500 DG D 631 0.07 SIDE CHAIN REMARK 500 DA D 632 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 550 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 101 SG REMARK 620 2 CYS A 104 SG 105.9 REMARK 620 3 CYS A 118 SG 105.1 99.1 REMARK 620 4 CYS A 121 SG 108.6 114.2 122.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 551 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 137 SG REMARK 620 2 CYS A 143 SG 129.0 REMARK 620 3 CYS A 153 SG 107.7 109.4 REMARK 620 4 CYS A 156 SG 117.1 93.2 94.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 450 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 101 SG REMARK 620 2 CYS B 104 SG 103.7 REMARK 620 3 CYS B 118 SG 126.5 110.5 REMARK 620 4 CYS B 121 SG 104.5 114.9 96.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 451 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 137 SG REMARK 620 2 CYS B 143 SG 106.1 REMARK 620 3 CYS B 153 SG 100.6 126.1 REMARK 620 4 CYS B 156 SG 100.5 98.9 121.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 550 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 551 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 451 DBREF 1A6Y A 92 184 UNP P20393 NR1D1_HUMAN 123 216 DBREF 1A6Y B 92 184 UNP P20393 NR1D1_HUMAN 123 216 DBREF 1A6Y C 600 619 PDB 1A6Y 1A6Y 600 619 DBREF 1A6Y D 621 640 PDB 1A6Y 1A6Y 621 640 SEQADV 1A6Y LEU A 116 UNP P20393 HIS 147 CLONING ARTIFACT SEQADV 1A6Y LEU B 116 UNP P20393 HIS 147 CLONING ARTIFACT SEQRES 1 C 20 DC DA DA DC DT DA DG DG DT DC DA DC 5IU SEQRES 2 C 20 DA DG DG DT DC DA DG SEQRES 1 D 20 DC DT DG DA DC DC DT DA DG DT DG DA DC SEQRES 2 D 20 DC DT DA DG DT DT DG SEQRES 1 A 94 THR LYS LEU ASN GLY MET VAL LEU LEU CYS LYS VAL CYS SEQRES 2 A 94 GLY ASP VAL ALA SER GLY PHE HIS TYR GLY VAL LEU ALA SEQRES 3 A 94 CYS GLU GLY CYS LYS GLY PHE PHE ARG ARG SER ILE GLN SEQRES 4 A 94 GLN ASN ILE GLN TYR LYS ARG CYS LEU LYS ASN GLU ASN SEQRES 5 A 94 CYS SER ILE VAL ARG ILE ASN ARG ASN ARG CYS GLN GLN SEQRES 6 A 94 CYS ARG PHE LYS LYS CYS LEU SER VAL GLY MET SER ARG SEQRES 7 A 94 ASP ALA VAL ARG PHE GLY ARG ILE PRO LYS ARG GLU LYS SEQRES 8 A 94 GLN ARG MET SEQRES 1 B 94 THR LYS LEU ASN GLY MET VAL LEU LEU CYS LYS VAL CYS SEQRES 2 B 94 GLY ASP VAL ALA SER GLY PHE HIS TYR GLY VAL LEU ALA SEQRES 3 B 94 CYS GLU GLY CYS LYS GLY PHE PHE ARG ARG SER ILE GLN SEQRES 4 B 94 GLN ASN ILE GLN TYR LYS ARG CYS LEU LYS ASN GLU ASN SEQRES 5 B 94 CYS SER ILE VAL ARG ILE ASN ARG ASN ARG CYS GLN GLN SEQRES 6 B 94 CYS ARG PHE LYS LYS CYS LEU SER VAL GLY MET SER ARG SEQRES 7 B 94 ASP ALA VAL ARG PHE GLY ARG ILE PRO LYS ARG GLU LYS SEQRES 8 B 94 GLN ARG MET MODRES 1A6Y 5IU C 612 DU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HET 5IU C 612 20 HET ZN A 550 1 HET ZN A 551 1 HET ZN B 450 1 HET ZN B 451 1 HETNAM 5IU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HETNAM ZN ZINC ION FORMUL 1 5IU C9 H12 I N2 O8 P FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *234(H2 O) HELIX 1 1 GLU A 119 ILE A 129 1 11 HELIX 2 2 GLN A 154 SER A 163 1 10 HELIX 3 3 GLU B 119 ILE B 129 1 11 HELIX 4 4 GLN B 154 VAL B 164 1 11 SHEET 1 A 2 GLY A 110 HIS A 112 0 SHEET 2 A 2 VAL A 115 ALA A 117 -1 N ALA A 117 O GLY A 110 LINK O3' DC C 611 P 5IU C 612 1555 1555 1.62 LINK O3' 5IU C 612 P DA C 613 1555 1555 1.62 LINK SG CYS A 101 ZN ZN A 550 1555 1555 2.34 LINK SG CYS A 104 ZN ZN A 550 1555 1555 2.41 LINK SG CYS A 118 ZN ZN A 550 1555 1555 2.32 LINK SG CYS A 121 ZN ZN A 550 1555 1555 2.18 LINK SG CYS A 137 ZN ZN A 551 1555 1555 2.25 LINK SG CYS A 143 ZN ZN A 551 1555 1555 2.17 LINK SG CYS A 153 ZN ZN A 551 1555 1555 2.34 LINK SG CYS A 156 ZN ZN A 551 1555 1555 2.40 LINK SG CYS B 101 ZN ZN B 450 1555 1555 2.21 LINK SG CYS B 104 ZN ZN B 450 1555 1555 2.35 LINK SG CYS B 118 ZN ZN B 450 1555 1555 2.28 LINK SG CYS B 121 ZN ZN B 450 1555 1555 2.34 LINK SG CYS B 137 ZN ZN B 451 1555 1555 2.34 LINK SG CYS B 143 ZN ZN B 451 1555 1555 2.29 LINK SG CYS B 153 ZN ZN B 451 1555 1555 2.18 LINK SG CYS B 156 ZN ZN B 451 1555 1555 2.32 SITE 1 AC1 4 CYS A 101 CYS A 104 CYS A 118 CYS A 121 SITE 1 AC2 4 CYS A 137 CYS A 143 CYS A 153 CYS A 156 SITE 1 AC3 4 CYS B 101 CYS B 104 CYS B 118 CYS B 121 SITE 1 AC4 4 CYS B 137 CYS B 143 CYS B 153 CYS B 156 CRYST1 38.670 45.690 47.950 75.16 80.64 85.58 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025860 -0.001999 -0.003889 0.00000 SCALE2 0.000000 0.021952 -0.005610 0.00000 SCALE3 0.000000 0.000000 0.021816 0.00000