data_1AMK # _entry.id 1AMK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AMK pdb_00001amk 10.2210/pdb1amk/pdb WWPDB D_1000171002 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AMK _pdbx_database_status.recvd_initial_deposition_date 1997-06-17 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Williams, J.C.' 1 'Wierenga, R.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Structural and mutagenesis studies of leishmania triosephosphate isomerase: a point mutation can convert a mesophilic enzyme into a superstable enzyme without losing catalytic power. ; 'Protein Eng.' 12 243 250 1999 PRENE9 UK 0269-2139 0859 ? 10235625 10.1093/protein/12.3.243 1 ;Triose-Phosphate Isomerase of Leishmania Mexicana Mexicana. Cloning and Characterization of the Gene, Overexpression in Escherichia Coli and Analysis of the Protein ; Eur.J.Biochem. 220 331 ? 1994 EJBCAI IX 0014-2956 0262 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Williams, J.C.' 1 ? primary 'Zeelen, J.P.' 2 ? primary 'Neubauer, G.' 3 ? primary 'Vriend, G.' 4 ? primary 'Backmann, J.' 5 ? primary 'Michels, P.A.' 6 ? primary 'Lambeir, A.M.' 7 ? primary 'Wierenga, R.K.' 8 ? 1 'Kohl, L.' 9 ? 1 'Callens, M.' 10 ? 1 'Wierenga, R.K.' 11 ? 1 'Opperdoes, F.R.' 12 ? 1 'Michels, P.A.' 13 ? # _cell.entry_id 1AMK _cell.length_a 99.090 _cell.length_b 52.940 _cell.length_c 58.850 _cell.angle_alpha 90.00 _cell.angle_beta 118.13 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AMK _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TRIOSE PHOSPHATE ISOMERASE' 27209.223 1 5.3.1.1 ? ? ? 2 non-polymer man '2-PHOSPHOGLYCOLIC ACID' 156.031 1 ? ? ? ? 3 water nat water 18.015 112 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSAKPQPIAAANWKCNGTTASIEKLVQVFNEHTISHDVQCVVAPTFVHIPLVQAKLRNPKYVISAENAIAKSGAFTGEVS MPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAW NQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLK PEFRDIIDATR ; _entity_poly.pdbx_seq_one_letter_code_can ;MSAKPQPIAAANWKCNGTTASIEKLVQVFNEHTISHDVQCVVAPTFVHIPLVQAKLRNPKYVISAENAIAKSGAFTGEVS MPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAW NQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLK PEFRDIIDATR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 ALA n 1 4 LYS n 1 5 PRO n 1 6 GLN n 1 7 PRO n 1 8 ILE n 1 9 ALA n 1 10 ALA n 1 11 ALA n 1 12 ASN n 1 13 TRP n 1 14 LYS n 1 15 CYS n 1 16 ASN n 1 17 GLY n 1 18 THR n 1 19 THR n 1 20 ALA n 1 21 SER n 1 22 ILE n 1 23 GLU n 1 24 LYS n 1 25 LEU n 1 26 VAL n 1 27 GLN n 1 28 VAL n 1 29 PHE n 1 30 ASN n 1 31 GLU n 1 32 HIS n 1 33 THR n 1 34 ILE n 1 35 SER n 1 36 HIS n 1 37 ASP n 1 38 VAL n 1 39 GLN n 1 40 CYS n 1 41 VAL n 1 42 VAL n 1 43 ALA n 1 44 PRO n 1 45 THR n 1 46 PHE n 1 47 VAL n 1 48 HIS n 1 49 ILE n 1 50 PRO n 1 51 LEU n 1 52 VAL n 1 53 GLN n 1 54 ALA n 1 55 LYS n 1 56 LEU n 1 57 ARG n 1 58 ASN n 1 59 PRO n 1 60 LYS n 1 61 TYR n 1 62 VAL n 1 63 ILE n 1 64 SER n 1 65 ALA n 1 66 GLU n 1 67 ASN n 1 68 ALA n 1 69 ILE n 1 70 ALA n 1 71 LYS n 1 72 SER n 1 73 GLY n 1 74 ALA n 1 75 PHE n 1 76 THR n 1 77 GLY n 1 78 GLU n 1 79 VAL n 1 80 SER n 1 81 MET n 1 82 PRO n 1 83 ILE n 1 84 LEU n 1 85 LYS n 1 86 ASP n 1 87 ILE n 1 88 GLY n 1 89 VAL n 1 90 HIS n 1 91 TRP n 1 92 VAL n 1 93 ILE n 1 94 LEU n 1 95 GLY n 1 96 HIS n 1 97 SER n 1 98 GLU n 1 99 ARG n 1 100 ARG n 1 101 THR n 1 102 TYR n 1 103 TYR n 1 104 GLY n 1 105 GLU n 1 106 THR n 1 107 ASP n 1 108 GLU n 1 109 ILE n 1 110 VAL n 1 111 ALA n 1 112 GLN n 1 113 LYS n 1 114 VAL n 1 115 SER n 1 116 GLU n 1 117 ALA n 1 118 CYS n 1 119 LYS n 1 120 GLN n 1 121 GLY n 1 122 PHE n 1 123 MET n 1 124 VAL n 1 125 ILE n 1 126 ALA n 1 127 CYS n 1 128 ILE n 1 129 GLY n 1 130 GLU n 1 131 THR n 1 132 LEU n 1 133 GLN n 1 134 GLN n 1 135 ARG n 1 136 GLU n 1 137 ALA n 1 138 ASN n 1 139 GLN n 1 140 THR n 1 141 ALA n 1 142 LYS n 1 143 VAL n 1 144 VAL n 1 145 LEU n 1 146 SER n 1 147 GLN n 1 148 THR n 1 149 SER n 1 150 ALA n 1 151 ILE n 1 152 ALA n 1 153 ALA n 1 154 LYS n 1 155 LEU n 1 156 THR n 1 157 LYS n 1 158 ASP n 1 159 ALA n 1 160 TRP n 1 161 ASN n 1 162 GLN n 1 163 VAL n 1 164 VAL n 1 165 LEU n 1 166 ALA n 1 167 TYR n 1 168 GLU n 1 169 PRO n 1 170 VAL n 1 171 TRP n 1 172 ALA n 1 173 ILE n 1 174 GLY n 1 175 THR n 1 176 GLY n 1 177 LYS n 1 178 VAL n 1 179 ALA n 1 180 THR n 1 181 PRO n 1 182 GLU n 1 183 GLN n 1 184 ALA n 1 185 GLN n 1 186 GLU n 1 187 VAL n 1 188 HIS n 1 189 LEU n 1 190 LEU n 1 191 LEU n 1 192 ARG n 1 193 LYS n 1 194 TRP n 1 195 VAL n 1 196 SER n 1 197 GLU n 1 198 ASN n 1 199 ILE n 1 200 GLY n 1 201 THR n 1 202 ASP n 1 203 VAL n 1 204 ALA n 1 205 ALA n 1 206 LYS n 1 207 LEU n 1 208 ARG n 1 209 ILE n 1 210 LEU n 1 211 TYR n 1 212 GLY n 1 213 GLY n 1 214 SER n 1 215 VAL n 1 216 ASN n 1 217 ALA n 1 218 ALA n 1 219 ASN n 1 220 ALA n 1 221 ALA n 1 222 THR n 1 223 LEU n 1 224 TYR n 1 225 ALA n 1 226 LYS n 1 227 PRO n 1 228 ASP n 1 229 ILE n 1 230 ASN n 1 231 GLY n 1 232 PHE n 1 233 LEU n 1 234 VAL n 1 235 GLY n 1 236 GLY n 1 237 ALA n 1 238 SER n 1 239 LEU n 1 240 LYS n 1 241 PRO n 1 242 GLU n 1 243 PHE n 1 244 ARG n 1 245 ASP n 1 246 ILE n 1 247 ILE n 1 248 ASP n 1 249 ALA n 1 250 THR n 1 251 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Leishmania _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Leishmania mexicana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 5665 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TPIS_LEIME _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P48499 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MSAKPQPIAAANWKCNGTTASIEKLVQVFNEHTISHDVQCVVAPTFVHIPLVQAKLRNPKYVISAENAIAKSGAFTGEVS MPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAW NQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLK PEFRDIIDATR ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1AMK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 251 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P48499 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 251 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 250 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PGA non-polymer . '2-PHOSPHOGLYCOLIC ACID' ? 'C2 H5 O6 P' 156.031 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1AMK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.5 _exptl_crystal.density_percent_sol 51. _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.85 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;100 MM ACETIC ACID/NAOH 4.5 20% PEG 6000 1 MM DTT, EDTA, 1 MM AZIDE, 5% ETHYLENE GLYCOL, 10 MM 2-PHOSPHOGLYCOLIC ACID. CRYSTAL WAS MOVED INTO 100 MM CITRATE PH 5.85 20 % PEG 6000, 1 MM DTT, 1 MM EDTA, 1 MM AZIDE BEFORE DATA COLLECTION. ; # _diffrn.id 1 _diffrn.ambient_temp 295 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'ENRAF-NONIUS FAST' _diffrn_detector.pdbx_collection_date 1996-02-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1AMK _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 22. _reflns.d_resolution_high 1.8 _reflns.number_obs 22669 _reflns.number_all ? _reflns.percent_possible_obs 89.2 _reflns.pdbx_Rmerge_I_obs 0.0480000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.5 _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.83 _reflns_shell.percent_possible_all 84.3 _reflns_shell.Rmerge_I_obs 0.1160000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6. _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1AMK _refine.ls_number_reflns_obs 21346 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0. _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22. _refine.ls_d_res_high 1.83 _refine.ls_percent_reflns_obs 88. _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1070000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details BABINET _refine.solvent_model_param_ksol 0.802 _refine.solvent_model_param_bsol 262.9 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 5TIM' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model 'TNT BCORREL V1.0' _refine.pdbx_stereochemistry_target_values 'TNT PROTGEO' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1906 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 112 _refine_hist.number_atoms_total 2027 _refine_hist.d_res_high 1.83 _refine_hist.d_res_low 22. # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.016 ? 6.000 1950 'X-RAY DIFFRACTION' ? t_angle_deg 2.808 ? 3.000 2644 'X-RAY DIFFRACTION' ? t_dihedral_angle_d 17.552 ? 3.000 1159 'X-RAY DIFFRACTION' ? t_incorr_chiral_ct 0 ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes 0.017 ? 8.000 48 'X-RAY DIFFRACTION' ? t_gen_planes 0.016 ? 25.000 280 'X-RAY DIFFRACTION' ? t_it 6.075 ? 0.210 1950 'X-RAY DIFFRACTION' ? t_nbd 0.015 ? 240. 66 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1AMK _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.1070000 _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 1AMK _struct.title 'LEISHMANIA MEXICANA TRIOSE PHOSPHATE ISOMERASE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AMK _struct_keywords.pdbx_keywords GLUCONEOGENESIS _struct_keywords.text 'TIM, 2-PG, PGA, GLUCONEOGENESIS, FATTY ACID BIOSYNTHESIS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 19 ? ASN A 30 ? THR A 18 ASN A 29 1 ? 12 HELX_P HELX_P2 2 ILE A 49 ? LYS A 55 ? ILE A 48 LYS A 54 1 ? 7 HELX_P HELX_P3 3 MET A 81 ? ASP A 86 ? MET A 80 ASP A 85 1 ? 6 HELX_P HELX_P4 4 SER A 97 ? TYR A 102 ? SER A 96 TYR A 101 1 ? 6 HELX_P HELX_P5 5 ASP A 107 ? LYS A 119 ? ASP A 106 LYS A 118 1 ? 13 HELX_P HELX_P6 6 LEU A 132 ? GLU A 136 ? LEU A 131 GLU A 135 1 ? 5 HELX_P HELX_P7 7 THR A 140 ? LYS A 154 ? THR A 139 LYS A 153 1 ? 15 HELX_P HELX_P8 8 LYS A 157 ? GLN A 162 ? LYS A 156 GLN A 161 5 ? 6 HELX_P HELX_P9 9 VAL A 170 ? ALA A 172 ? VAL A 169 ALA A 171 5 ? 3 HELX_P HELX_P10 10 PRO A 181 ? ASN A 198 ? PRO A 180 ASN A 197 1 ? 18 HELX_P HELX_P11 11 THR A 201 ? LYS A 206 ? THR A 200 LYS A 205 1 ? 6 HELX_P HELX_P12 12 ALA A 220 ? TYR A 224 ? ALA A 219 TYR A 223 1 ? 5 HELX_P HELX_P13 13 GLY A 236 ? LEU A 239 ? GLY A 235 LEU A 238 5 ? 4 HELX_P HELX_P14 14 PRO A 241 ? ALA A 249 ? PRO A 240 ALA A 248 5 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 231 ? VAL A 234 ? GLY A 230 VAL A 233 A 2 PRO A 7 ? ASN A 12 ? PRO A 6 ASN A 11 A 3 VAL A 38 ? ALA A 43 ? VAL A 37 ALA A 42 A 4 TYR A 61 ? SER A 64 ? TYR A 60 SER A 63 B 1 TRP A 91 ? LEU A 94 ? TRP A 90 LEU A 93 B 2 MET A 123 ? ILE A 128 ? MET A 122 ILE A 127 B 3 VAL A 163 ? TYR A 167 ? VAL A 162 TYR A 166 B 4 ILE A 209 ? TYR A 211 ? ILE A 208 TYR A 210 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 232 ? O PHE A 231 N ILE A 8 ? N ILE A 7 A 2 3 O PRO A 7 ? O PRO A 6 N GLN A 39 ? N GLN A 38 A 3 4 O CYS A 40 ? O CYS A 39 N VAL A 62 ? N VAL A 61 B 1 2 O VAL A 92 ? O VAL A 91 N MET A 123 ? N MET A 122 B 2 3 O VAL A 124 ? O VAL A 123 N VAL A 164 ? N VAL A 163 B 3 4 O LEU A 165 ? O LEU A 164 N LEU A 210 ? N LEU A 209 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id PGA _struct_site.pdbx_auth_seq_id 600 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 14 _struct_site.details 'BINDING SITE FOR RESIDUE PGA A 600' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 LYS A 14 ? LYS A 13 . ? 1_555 ? 2 AC1 14 HIS A 96 ? HIS A 95 . ? 1_555 ? 3 AC1 14 GLU A 168 ? GLU A 167 . ? 1_555 ? 4 AC1 14 ALA A 172 ? ALA A 171 . ? 1_555 ? 5 AC1 14 ILE A 173 ? ILE A 172 . ? 1_555 ? 6 AC1 14 GLY A 174 ? GLY A 173 . ? 1_555 ? 7 AC1 14 GLY A 213 ? GLY A 212 . ? 1_555 ? 8 AC1 14 SER A 214 ? SER A 213 . ? 1_555 ? 9 AC1 14 GLY A 235 ? GLY A 234 . ? 1_555 ? 10 AC1 14 GLY A 236 ? GLY A 235 . ? 1_555 ? 11 AC1 14 HOH C . ? HOH A 261 . ? 1_555 ? 12 AC1 14 HOH C . ? HOH A 271 . ? 1_555 ? 13 AC1 14 HOH C . ? HOH A 317 . ? 1_555 ? 14 AC1 14 HOH C . ? HOH A 324 . ? 1_555 ? # _database_PDB_matrix.entry_id 1AMK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1AMK _atom_sites.fract_transf_matrix[1][1] 0.010092 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005395 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018889 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019268 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 SER 2 1 1 SER SER A . n A 1 3 ALA 3 2 2 ALA ALA A . n A 1 4 LYS 4 3 3 LYS LYS A . n A 1 5 PRO 5 4 4 PRO PRO A . n A 1 6 GLN 6 5 5 GLN GLN A . n A 1 7 PRO 7 6 6 PRO PRO A . n A 1 8 ILE 8 7 7 ILE ILE A . n A 1 9 ALA 9 8 8 ALA ALA A . n A 1 10 ALA 10 9 9 ALA ALA A . n A 1 11 ALA 11 10 10 ALA ALA A . n A 1 12 ASN 12 11 11 ASN ASN A . n A 1 13 TRP 13 12 12 TRP TRP A . n A 1 14 LYS 14 13 13 LYS LYS A . n A 1 15 CYS 15 14 14 CYS CYS A . n A 1 16 ASN 16 15 15 ASN ASN A . n A 1 17 GLY 17 16 16 GLY GLY A . n A 1 18 THR 18 17 17 THR THR A . n A 1 19 THR 19 18 18 THR THR A . n A 1 20 ALA 20 19 19 ALA ALA A . n A 1 21 SER 21 20 20 SER SER A . n A 1 22 ILE 22 21 21 ILE ILE A . n A 1 23 GLU 23 22 22 GLU GLU A . n A 1 24 LYS 24 23 23 LYS LYS A . n A 1 25 LEU 25 24 24 LEU LEU A . n A 1 26 VAL 26 25 25 VAL VAL A . n A 1 27 GLN 27 26 26 GLN GLN A . n A 1 28 VAL 28 27 27 VAL VAL A . n A 1 29 PHE 29 28 28 PHE PHE A . n A 1 30 ASN 30 29 29 ASN ASN A . n A 1 31 GLU 31 30 30 GLU GLU A . n A 1 32 HIS 32 31 31 HIS HIS A . n A 1 33 THR 33 32 32 THR THR A . n A 1 34 ILE 34 33 33 ILE ILE A . n A 1 35 SER 35 34 34 SER SER A . n A 1 36 HIS 36 35 35 HIS HIS A . n A 1 37 ASP 37 36 36 ASP ASP A . n A 1 38 VAL 38 37 37 VAL VAL A . n A 1 39 GLN 39 38 38 GLN GLN A . n A 1 40 CYS 40 39 39 CYS CYS A . n A 1 41 VAL 41 40 40 VAL VAL A . n A 1 42 VAL 42 41 41 VAL VAL A . n A 1 43 ALA 43 42 42 ALA ALA A . n A 1 44 PRO 44 43 43 PRO PRO A . n A 1 45 THR 45 44 44 THR THR A . n A 1 46 PHE 46 45 45 PHE PHE A . n A 1 47 VAL 47 46 46 VAL VAL A . n A 1 48 HIS 48 47 47 HIS HIS A . n A 1 49 ILE 49 48 48 ILE ILE A . n A 1 50 PRO 50 49 49 PRO PRO A . n A 1 51 LEU 51 50 50 LEU LEU A . n A 1 52 VAL 52 51 51 VAL VAL A . n A 1 53 GLN 53 52 52 GLN GLN A . n A 1 54 ALA 54 53 53 ALA ALA A . n A 1 55 LYS 55 54 54 LYS LYS A . n A 1 56 LEU 56 55 55 LEU LEU A . n A 1 57 ARG 57 56 56 ARG ARG A . n A 1 58 ASN 58 57 57 ASN ASN A . n A 1 59 PRO 59 58 58 PRO PRO A . n A 1 60 LYS 60 59 59 LYS LYS A . n A 1 61 TYR 61 60 60 TYR TYR A . n A 1 62 VAL 62 61 61 VAL VAL A . n A 1 63 ILE 63 62 62 ILE ILE A . n A 1 64 SER 64 63 63 SER SER A . n A 1 65 ALA 65 64 64 ALA ALA A . n A 1 66 GLU 66 65 65 GLU GLU A . n A 1 67 ASN 67 66 66 ASN ASN A . n A 1 68 ALA 68 67 67 ALA ALA A . n A 1 69 ILE 69 68 68 ILE ILE A . n A 1 70 ALA 70 69 69 ALA ALA A . n A 1 71 LYS 71 70 70 LYS LYS A . n A 1 72 SER 72 71 71 SER SER A . n A 1 73 GLY 73 72 72 GLY GLY A . n A 1 74 ALA 74 73 73 ALA ALA A . n A 1 75 PHE 75 74 74 PHE PHE A . n A 1 76 THR 76 75 75 THR THR A . n A 1 77 GLY 77 76 76 GLY GLY A . n A 1 78 GLU 78 77 77 GLU GLU A . n A 1 79 VAL 79 78 78 VAL VAL A . n A 1 80 SER 80 79 79 SER SER A . n A 1 81 MET 81 80 80 MET MET A . n A 1 82 PRO 82 81 81 PRO PRO A . n A 1 83 ILE 83 82 82 ILE ILE A . n A 1 84 LEU 84 83 83 LEU LEU A . n A 1 85 LYS 85 84 84 LYS LYS A . n A 1 86 ASP 86 85 85 ASP ASP A . n A 1 87 ILE 87 86 86 ILE ILE A . n A 1 88 GLY 88 87 87 GLY GLY A . n A 1 89 VAL 89 88 88 VAL VAL A . n A 1 90 HIS 90 89 89 HIS HIS A . n A 1 91 TRP 91 90 90 TRP TRP A . n A 1 92 VAL 92 91 91 VAL VAL A . n A 1 93 ILE 93 92 92 ILE ILE A . n A 1 94 LEU 94 93 93 LEU LEU A . n A 1 95 GLY 95 94 94 GLY GLY A . n A 1 96 HIS 96 95 95 HIS HIS A . n A 1 97 SER 97 96 96 SER SER A . n A 1 98 GLU 98 97 97 GLU GLU A . n A 1 99 ARG 99 98 98 ARG ARG A . n A 1 100 ARG 100 99 99 ARG ARG A . n A 1 101 THR 101 100 100 THR THR A . n A 1 102 TYR 102 101 101 TYR TYR A . n A 1 103 TYR 103 102 102 TYR TYR A . n A 1 104 GLY 104 103 103 GLY GLY A . n A 1 105 GLU 105 104 104 GLU GLU A . n A 1 106 THR 106 105 105 THR THR A . n A 1 107 ASP 107 106 106 ASP ASP A . n A 1 108 GLU 108 107 107 GLU GLU A . n A 1 109 ILE 109 108 108 ILE ILE A . n A 1 110 VAL 110 109 109 VAL VAL A . n A 1 111 ALA 111 110 110 ALA ALA A . n A 1 112 GLN 112 111 111 GLN GLN A . n A 1 113 LYS 113 112 112 LYS LYS A . n A 1 114 VAL 114 113 113 VAL VAL A . n A 1 115 SER 115 114 114 SER SER A . n A 1 116 GLU 116 115 115 GLU GLU A . n A 1 117 ALA 117 116 116 ALA ALA A . n A 1 118 CYS 118 117 117 CYS CYS A . n A 1 119 LYS 119 118 118 LYS LYS A . n A 1 120 GLN 120 119 119 GLN GLN A . n A 1 121 GLY 121 120 120 GLY GLY A . n A 1 122 PHE 122 121 121 PHE PHE A . n A 1 123 MET 123 122 122 MET MET A . n A 1 124 VAL 124 123 123 VAL VAL A . n A 1 125 ILE 125 124 124 ILE ILE A . n A 1 126 ALA 126 125 125 ALA ALA A . n A 1 127 CYS 127 126 126 CYS CYS A . n A 1 128 ILE 128 127 127 ILE ILE A . n A 1 129 GLY 129 128 128 GLY GLY A . n A 1 130 GLU 130 129 129 GLU GLU A . n A 1 131 THR 131 130 130 THR THR A . n A 1 132 LEU 132 131 131 LEU LEU A . n A 1 133 GLN 133 132 132 GLN GLN A . n A 1 134 GLN 134 133 133 GLN GLN A . n A 1 135 ARG 135 134 134 ARG ARG A . n A 1 136 GLU 136 135 135 GLU GLU A . n A 1 137 ALA 137 136 136 ALA ALA A . n A 1 138 ASN 138 137 137 ASN ASN A . n A 1 139 GLN 139 138 138 GLN GLN A . n A 1 140 THR 140 139 139 THR THR A . n A 1 141 ALA 141 140 140 ALA ALA A . n A 1 142 LYS 142 141 141 LYS LYS A . n A 1 143 VAL 143 142 142 VAL VAL A . n A 1 144 VAL 144 143 143 VAL VAL A . n A 1 145 LEU 145 144 144 LEU LEU A . n A 1 146 SER 146 145 145 SER SER A . n A 1 147 GLN 147 146 146 GLN GLN A . n A 1 148 THR 148 147 147 THR THR A . n A 1 149 SER 149 148 148 SER SER A . n A 1 150 ALA 150 149 149 ALA ALA A . n A 1 151 ILE 151 150 150 ILE ILE A . n A 1 152 ALA 152 151 151 ALA ALA A . n A 1 153 ALA 153 152 152 ALA ALA A . n A 1 154 LYS 154 153 153 LYS LYS A . n A 1 155 LEU 155 154 154 LEU LEU A . n A 1 156 THR 156 155 155 THR THR A . n A 1 157 LYS 157 156 156 LYS LYS A . n A 1 158 ASP 158 157 157 ASP ASP A . n A 1 159 ALA 159 158 158 ALA ALA A . n A 1 160 TRP 160 159 159 TRP TRP A . n A 1 161 ASN 161 160 160 ASN ASN A . n A 1 162 GLN 162 161 161 GLN GLN A . n A 1 163 VAL 163 162 162 VAL VAL A . n A 1 164 VAL 164 163 163 VAL VAL A . n A 1 165 LEU 165 164 164 LEU LEU A . n A 1 166 ALA 166 165 165 ALA ALA A . n A 1 167 TYR 167 166 166 TYR TYR A . n A 1 168 GLU 168 167 167 GLU GLU A . n A 1 169 PRO 169 168 168 PRO PRO A . n A 1 170 VAL 170 169 169 VAL VAL A . n A 1 171 TRP 171 170 170 TRP TRP A . n A 1 172 ALA 172 171 171 ALA ALA A . n A 1 173 ILE 173 172 172 ILE ILE A . n A 1 174 GLY 174 173 173 GLY GLY A . n A 1 175 THR 175 174 174 THR THR A . n A 1 176 GLY 176 175 175 GLY GLY A . n A 1 177 LYS 177 176 176 LYS LYS A . n A 1 178 VAL 178 177 177 VAL VAL A . n A 1 179 ALA 179 178 178 ALA ALA A . n A 1 180 THR 180 179 179 THR THR A . n A 1 181 PRO 181 180 180 PRO PRO A . n A 1 182 GLU 182 181 181 GLU GLU A . n A 1 183 GLN 183 182 182 GLN GLN A . n A 1 184 ALA 184 183 183 ALA ALA A . n A 1 185 GLN 185 184 184 GLN GLN A . n A 1 186 GLU 186 185 185 GLU GLU A . n A 1 187 VAL 187 186 186 VAL VAL A . n A 1 188 HIS 188 187 187 HIS HIS A . n A 1 189 LEU 189 188 188 LEU LEU A . n A 1 190 LEU 190 189 189 LEU LEU A . n A 1 191 LEU 191 190 190 LEU LEU A . n A 1 192 ARG 192 191 191 ARG ARG A . n A 1 193 LYS 193 192 192 LYS LYS A . n A 1 194 TRP 194 193 193 TRP TRP A . n A 1 195 VAL 195 194 194 VAL VAL A . n A 1 196 SER 196 195 195 SER SER A . n A 1 197 GLU 197 196 196 GLU GLU A . n A 1 198 ASN 198 197 197 ASN ASN A . n A 1 199 ILE 199 198 198 ILE ILE A . n A 1 200 GLY 200 199 199 GLY GLY A . n A 1 201 THR 201 200 200 THR THR A . n A 1 202 ASP 202 201 201 ASP ASP A . n A 1 203 VAL 203 202 202 VAL VAL A . n A 1 204 ALA 204 203 203 ALA ALA A . n A 1 205 ALA 205 204 204 ALA ALA A . n A 1 206 LYS 206 205 205 LYS LYS A . n A 1 207 LEU 207 206 206 LEU LEU A . n A 1 208 ARG 208 207 207 ARG ARG A . n A 1 209 ILE 209 208 208 ILE ILE A . n A 1 210 LEU 210 209 209 LEU LEU A . n A 1 211 TYR 211 210 210 TYR TYR A . n A 1 212 GLY 212 211 211 GLY GLY A . n A 1 213 GLY 213 212 212 GLY GLY A . n A 1 214 SER 214 213 213 SER SER A . n A 1 215 VAL 215 214 214 VAL VAL A . n A 1 216 ASN 216 215 215 ASN ASN A . n A 1 217 ALA 217 216 216 ALA ALA A . n A 1 218 ALA 218 217 217 ALA ALA A . n A 1 219 ASN 219 218 218 ASN ASN A . n A 1 220 ALA 220 219 219 ALA ALA A . n A 1 221 ALA 221 220 220 ALA ALA A . n A 1 222 THR 222 221 221 THR THR A . n A 1 223 LEU 223 222 222 LEU LEU A . n A 1 224 TYR 224 223 223 TYR TYR A . n A 1 225 ALA 225 224 224 ALA ALA A . n A 1 226 LYS 226 225 225 LYS LYS A . n A 1 227 PRO 227 226 226 PRO PRO A . n A 1 228 ASP 228 227 227 ASP ASP A . n A 1 229 ILE 229 228 228 ILE ILE A . n A 1 230 ASN 230 229 229 ASN ASN A . n A 1 231 GLY 231 230 230 GLY GLY A . n A 1 232 PHE 232 231 231 PHE PHE A . n A 1 233 LEU 233 232 232 LEU LEU A . n A 1 234 VAL 234 233 233 VAL VAL A . n A 1 235 GLY 235 234 234 GLY GLY A . n A 1 236 GLY 236 235 235 GLY GLY A . n A 1 237 ALA 237 236 236 ALA ALA A . n A 1 238 SER 238 237 237 SER SER A . n A 1 239 LEU 239 238 238 LEU LEU A . n A 1 240 LYS 240 239 239 LYS LYS A . n A 1 241 PRO 241 240 240 PRO PRO A . n A 1 242 GLU 242 241 241 GLU GLU A . n A 1 243 PHE 243 242 242 PHE PHE A . n A 1 244 ARG 244 243 243 ARG ARG A . n A 1 245 ASP 245 244 244 ASP ASP A . n A 1 246 ILE 246 245 245 ILE ILE A . n A 1 247 ILE 247 246 246 ILE ILE A . n A 1 248 ASP 248 247 247 ASP ASP A . n A 1 249 ALA 249 248 248 ALA ALA A . n A 1 250 THR 250 249 249 THR THR A . n A 1 251 ARG 251 250 250 ARG ARG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PGA 1 600 600 PGA PGA A . C 3 HOH 1 252 252 HOH HOH A . C 3 HOH 2 253 253 HOH HOH A . C 3 HOH 3 254 254 HOH HOH A . C 3 HOH 4 255 255 HOH HOH A . C 3 HOH 5 256 256 HOH HOH A . C 3 HOH 6 257 257 HOH HOH A . C 3 HOH 7 258 258 HOH HOH A . C 3 HOH 8 259 259 HOH HOH A . C 3 HOH 9 260 260 HOH HOH A . C 3 HOH 10 261 261 HOH HOH A . C 3 HOH 11 262 262 HOH HOH A . C 3 HOH 12 263 263 HOH HOH A . C 3 HOH 13 264 264 HOH HOH A . C 3 HOH 14 265 265 HOH HOH A . C 3 HOH 15 267 267 HOH HOH A . C 3 HOH 16 268 268 HOH HOH A . C 3 HOH 17 269 269 HOH HOH A . C 3 HOH 18 270 270 HOH HOH A . C 3 HOH 19 271 271 HOH HOH A . C 3 HOH 20 272 272 HOH HOH A . C 3 HOH 21 274 274 HOH HOH A . C 3 HOH 22 275 275 HOH HOH A . C 3 HOH 23 276 276 HOH HOH A . C 3 HOH 24 277 277 HOH HOH A . C 3 HOH 25 278 278 HOH HOH A . C 3 HOH 26 279 279 HOH HOH A . C 3 HOH 27 280 280 HOH HOH A . C 3 HOH 28 281 281 HOH HOH A . C 3 HOH 29 282 282 HOH HOH A . C 3 HOH 30 283 283 HOH HOH A . C 3 HOH 31 284 284 HOH HOH A . C 3 HOH 32 285 285 HOH HOH A . C 3 HOH 33 286 286 HOH HOH A . C 3 HOH 34 287 287 HOH HOH A . C 3 HOH 35 288 288 HOH HOH A . C 3 HOH 36 289 289 HOH HOH A . C 3 HOH 37 290 290 HOH HOH A . C 3 HOH 38 291 291 HOH HOH A . C 3 HOH 39 292 292 HOH HOH A . C 3 HOH 40 293 293 HOH HOH A . C 3 HOH 41 294 294 HOH HOH A . C 3 HOH 42 295 295 HOH HOH A . C 3 HOH 43 296 296 HOH HOH A . C 3 HOH 44 297 297 HOH HOH A . C 3 HOH 45 298 298 HOH HOH A . C 3 HOH 46 299 299 HOH HOH A . C 3 HOH 47 300 300 HOH HOH A . C 3 HOH 48 301 301 HOH HOH A . C 3 HOH 49 302 302 HOH HOH A . C 3 HOH 50 303 303 HOH HOH A . C 3 HOH 51 304 304 HOH HOH A . C 3 HOH 52 305 305 HOH HOH A . C 3 HOH 53 306 306 HOH HOH A . C 3 HOH 54 307 307 HOH HOH A . C 3 HOH 55 308 308 HOH HOH A . C 3 HOH 56 309 309 HOH HOH A . C 3 HOH 57 310 310 HOH HOH A . C 3 HOH 58 312 312 HOH HOH A . C 3 HOH 59 313 313 HOH HOH A . C 3 HOH 60 314 314 HOH HOH A . C 3 HOH 61 315 315 HOH HOH A . C 3 HOH 62 316 316 HOH HOH A . C 3 HOH 63 317 317 HOH HOH A . C 3 HOH 64 319 319 HOH HOH A . C 3 HOH 65 320 320 HOH HOH A . C 3 HOH 66 321 321 HOH HOH A . C 3 HOH 67 322 322 HOH HOH A . C 3 HOH 68 323 323 HOH HOH A . C 3 HOH 69 324 324 HOH HOH A . C 3 HOH 70 325 325 HOH HOH A . C 3 HOH 71 328 328 HOH HOH A . C 3 HOH 72 329 329 HOH HOH A . C 3 HOH 73 330 330 HOH HOH A . C 3 HOH 74 331 331 HOH HOH A . C 3 HOH 75 332 332 HOH HOH A . C 3 HOH 76 333 333 HOH HOH A . C 3 HOH 77 334 334 HOH HOH A . C 3 HOH 78 335 335 HOH HOH A . C 3 HOH 79 337 337 HOH HOH A . C 3 HOH 80 338 338 HOH HOH A . C 3 HOH 81 339 339 HOH HOH A . C 3 HOH 82 340 340 HOH HOH A . C 3 HOH 83 341 341 HOH HOH A . C 3 HOH 84 342 342 HOH HOH A . C 3 HOH 85 343 343 HOH HOH A . C 3 HOH 86 344 344 HOH HOH A . C 3 HOH 87 345 345 HOH HOH A . C 3 HOH 88 346 346 HOH HOH A . C 3 HOH 89 347 347 HOH HOH A . C 3 HOH 90 348 348 HOH HOH A . C 3 HOH 91 349 349 HOH HOH A . C 3 HOH 92 350 350 HOH HOH A . C 3 HOH 93 352 352 HOH HOH A . C 3 HOH 94 353 353 HOH HOH A . C 3 HOH 95 355 355 HOH HOH A . C 3 HOH 96 357 357 HOH HOH A . C 3 HOH 97 358 358 HOH HOH A . C 3 HOH 98 359 359 HOH HOH A . C 3 HOH 99 360 360 HOH HOH A . C 3 HOH 100 361 361 HOH HOH A . C 3 HOH 101 362 362 HOH HOH A . C 3 HOH 102 363 363 HOH HOH A . C 3 HOH 103 364 364 HOH HOH A . C 3 HOH 104 365 365 HOH HOH A . C 3 HOH 105 366 366 HOH HOH A . C 3 HOH 106 367 367 HOH HOH A . C 3 HOH 107 368 368 HOH HOH A . C 3 HOH 108 369 369 HOH HOH A . C 3 HOH 109 401 401 HOH HOH A . C 3 HOH 110 402 402 HOH HOH A . C 3 HOH 111 403 403 HOH HOH A . C 3 HOH 112 404 404 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3720 ? 1 MORE -32 ? 1 'SSA (A^2)' 19010 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 404 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-12-17 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-11-16 5 'Structure model' 1 4 2018-04-18 6 'Structure model' 1 5 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Atomic model' 5 5 'Structure model' 'Data collection' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Derived calculations' 8 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' diffrn_detector 2 6 'Structure model' database_2 3 6 'Structure model' pdbx_initial_refinement_model 4 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_diffrn_detector.detector' 2 6 'Structure model' '_database_2.pdbx_DOI' 3 6 'Structure model' '_database_2.pdbx_database_accession' 4 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 TNT refinement 5D ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 274 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 274 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_555 _pdbx_validate_symm_contact.dist 1.40 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 ARG _pdbx_validate_rmsd_bond.auth_seq_id_1 250 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OXT _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 ARG _pdbx_validate_rmsd_bond.auth_seq_id_2 250 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 2.763 _pdbx_validate_rmsd_bond.bond_target_value 1.229 _pdbx_validate_rmsd_bond.bond_deviation 1.534 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.019 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A CYS 39 ? ? CB A CYS 39 ? ? SG A CYS 39 ? ? 102.73 114.00 -11.27 1.80 N 2 1 NE A ARG 98 ? ? CZ A ARG 98 ? ? NH2 A ARG 98 ? ? 116.99 120.30 -3.31 0.50 N 3 1 CB A TYR 101 ? ? CA A TYR 101 ? ? C A TYR 101 ? ? 95.97 110.40 -14.43 2.00 N 4 1 CB A ASP 106 ? ? CG A ASP 106 ? ? OD1 A ASP 106 ? ? 127.13 118.30 8.83 0.90 N 5 1 CG1 A ILE 108 ? ? CB A ILE 108 ? ? CG2 A ILE 108 ? ? 95.16 111.40 -16.24 2.20 N 6 1 CB A LEU 144 ? ? CG A LEU 144 ? ? CD2 A LEU 144 ? ? 121.81 111.00 10.81 1.70 N 7 1 CB A SER 145 ? ? CA A SER 145 ? ? C A SER 145 ? ? 94.10 110.10 -16.00 1.90 N 8 1 CB A THR 155 ? ? CA A THR 155 ? ? C A THR 155 ? ? 93.46 111.60 -18.14 2.70 N 9 1 CA A THR 179 ? ? CB A THR 179 ? ? CG2 A THR 179 ? ? 101.82 112.40 -10.58 1.40 N 10 1 CB A ASP 201 ? ? CG A ASP 201 ? ? OD1 A ASP 201 ? ? 126.41 118.30 8.11 0.90 N 11 1 CB A ASP 201 ? ? CG A ASP 201 ? ? OD2 A ASP 201 ? ? 112.89 118.30 -5.41 0.90 N 12 1 CB A LEU 222 ? ? CG A LEU 222 ? ? CD1 A LEU 222 ? ? 121.27 111.00 10.27 1.70 N 13 1 NE A ARG 243 ? ? CZ A ARG 243 ? ? NH2 A ARG 243 ? ? 116.02 120.30 -4.28 0.50 N 14 1 CB A ASP 244 ? ? CG A ASP 244 ? ? OD2 A ASP 244 ? ? 123.94 118.30 5.64 0.90 N 15 1 NE A ARG 250 ? ? CZ A ARG 250 ? ? NH1 A ARG 250 ? ? 115.62 120.30 -4.68 0.50 N 16 1 NE A ARG 250 ? ? CZ A ARG 250 ? ? NH2 A ARG 250 ? ? 123.79 120.30 3.49 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 2 ? ? 82.51 -14.96 2 1 LYS A 3 ? ? -17.22 174.22 3 1 LYS A 13 ? ? 49.82 -133.29 4 1 CYS A 14 ? ? -106.11 64.23 5 1 ASN A 66 ? ? 178.43 172.42 6 1 ALA A 67 ? ? 178.78 171.23 7 1 LYS A 176 ? ? -102.77 70.61 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id MET _pdbx_unobs_or_zero_occ_residues.auth_seq_id 0 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id MET _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2-PHOSPHOGLYCOLIC ACID' PGA 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5TIM _pdbx_initial_refinement_model.details 'PDB ENTRY 5TIM' #