HEADER TRANSFERASE 06-OCT-97 1AWX TITLE SH3 DOMAIN FROM BRUTON'S TYROSINE KINASE, NMR, MINIMIZED TITLE 2 AVERAGE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRUTON'S TYROSINE KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 SYNONYM: ATK, AGMX1, BPK; COMPND 6 EC: 2.7.1.112; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: BLOOD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-3 KEYWDS TYROSINE KINASE, X-LINKED AGAMMAGLOBULINEMIA, XLA, BTK, SH3 KEYWDS 2 DOMAIN, TRANSFERASE EXPDTA SOLUTION NMR AUTHOR H.HANSSON,P.T.MATTSSON,P.ALLARD,P.HAAPANIEMI,M.VIHINEN, AUTHOR 2 C.I.E.SMITH,T.HARD REVDAT 3 24-FEB-09 1AWX 1 VERSN REVDAT 2 01-APR-03 1AWX 1 JRNL REVDAT 1 08-APR-98 1AWX 0 JRNL AUTH H.HANSSON,P.T.MATTSSON,P.ALLARD,P.HAAPANIEMI, JRNL AUTH 2 M.VIHINEN,C.I.SMITH,T.HARD JRNL TITL SOLUTION STRUCTURE OF THE SH3 DOMAIN FROM BRUTON'S JRNL TITL 2 TYROSINE KINASE. JRNL REF BIOCHEMISTRY V. 37 2912 1998 JRNL REFN ISSN 0006-2960 JRNL PMID 9485443 JRNL DOI 10.1021/BI972409F REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS DETERMINED USING REMARK 3 756 DISTANCE RESTRAINTS, 52 DIHEDRAL ANGLE RESTRAINTS AND 22 REMARK 3 HYDROGEN BOND RESTRAINTS. THE HYDROGEN BOND RESTRAINTS WERE REMARK 3 USED ONLY IN THE LAST STEP OF REFINEMENT. 50 STRUCTURES WERE REMARK 3 CALCULATED AND REFINED USING AB INITIO SIMULATED ANNEALING REMARK 3 PROTOCOL FOR X-PLOR (1). ALL FORCE CONSTANTS AND POTENTIALS REMARK 3 WERE SET TO THE DEFAULT (PROTOCOL) VALUES EXCEPT FOR THE VAN REMARK 3 DER WAALS' RADII SCALE FACTOR ("REPEL"), WHICH WAS DECREASED REMARK 3 TO 0.80 INSTEAD OF 0.75 DURING THE FINAL COOLING STAGES IN THE REMARK 3 REFINEMENT. THIS RESULTS IN MORE REASONABLE BACKBONE REMARK 3 CONFORMATION AND SOMEWHAT HIGHER X-PLOR TOTAL ENERGIES. CENTER REMARK 3 AVERAGING PSEUDOATOM CORRECTION WAS USED FOR ALL DISTANCE REMARK 3 RESTRAINT S(2). ON THE BASIS OF X-PLOR TOTAL ENERGY 42 LOWEST REMARK 3 ENERGY STRUCTURES WERE SELECTED. THE AVERAGE AND MINIMIZED REMARK 3 STRUCTURE WAS CALCULATED BY AVERAGING SUPERIMPOSED STRUCTURES REMARK 3 IN THE ENSEMBLE AND THEN ENERGY MINIMIZING THE AVERAGE REMARK 3 STRUCTURE. THE POTENTIALS AND CONSTANTS USED IN THE ENERGY REMARK 3 MINIMIZATION WERE THE SAME FOR THE AVERAGE STRUCTURE AND THE REMARK 3 ENSEMBLE STRUCTURES. REMARK 4 REMARK 4 1AWX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, TOCSY, DQF-COSY, 15N- REMARK 210 TOCSY-HSQC, 15N-NOESY-HSQC, REMARK 210 HNHA, HNHB REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITY 500 REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 4.3 AND 5.2, ANSIG V.3.2 REMARK 210 V.3.2, X-PLOR V.3.851 V.3.851 REMARK 210 METHOD USED : AB INITIO - SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : MINIMIZED AVERAGE STRUCTURE REMARK 210 BASED ON 42 LOWEST ENERGY REMARK 210 STRUCTURES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 3 91.10 52.82 REMARK 500 SER A 6 -72.51 -59.56 REMARK 500 LEU A 8 115.68 -161.33 REMARK 500 LEU A 14 -70.95 -91.67 REMARK 500 TYR A 17 93.15 -167.56 REMARK 500 ASN A 21 -55.19 -125.35 REMARK 500 ALA A 22 -40.23 -170.66 REMARK 500 LEU A 27 -168.97 -79.77 REMARK 500 ARG A 28 -158.33 -169.99 REMARK 500 GLU A 37 -162.28 -123.81 REMARK 500 GLU A 38 43.49 177.99 REMARK 500 SER A 39 -171.18 -54.13 REMARK 500 TRP A 44 -161.66 -110.22 REMARK 500 ASP A 48 -152.70 -98.80 REMARK 500 LYS A 49 36.48 -95.93 REMARK 500 THR A 62 -133.42 -145.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 28 0.30 SIDE_CHAIN REMARK 500 ARG A 45 0.28 SIDE_CHAIN REMARK 500 ARG A 47 0.22 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AWW RELATED DB: PDB DBREF 1AWX A 4 67 UNP Q06187 BTK_HUMAN 212 275 SEQRES 1 A 67 GLY SER MET SER THR SER GLU LEU LYS LYS VAL VAL ALA SEQRES 2 A 67 LEU TYR ASP TYR MET PRO MET ASN ALA ASN ASP LEU GLN SEQRES 3 A 67 LEU ARG LYS GLY ASP GLU TYR PHE ILE LEU GLU GLU SER SEQRES 4 A 67 ASN LEU PRO TRP TRP ARG ALA ARG ASP LYS ASN GLY GLN SEQRES 5 A 67 GLU GLY TYR ILE PRO SER ASN TYR VAL THR GLU ALA GLU SEQRES 6 A 67 ASP SER SHEET 1 A 2 LYS A 10 VAL A 12 0 SHEET 2 A 2 GLU A 32 PHE A 34 -1 N TYR A 33 O VAL A 11 SHEET 1 B 2 TRP A 43 ARG A 47 0 SHEET 2 B 2 GLU A 53 PRO A 57 -1 N ILE A 56 O TRP A 44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000