HEADER MEMBRANE PROTEIN 28-DEC-98 1B4R TITLE PKD DOMAIN 1 FROM HUMAN POLYCYSTEIN-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (PKD1_HUMAN); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PKD DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSETA KEYWDS PKD DOMAIN 1 FROM HUMAN POLYCYSTEIN-1, POLYCYSTIN (PRECURSOR), KEYWDS 2 MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.BYCROFT REVDAT 4 16-FEB-22 1B4R 1 REMARK SEQADV REVDAT 3 24-FEB-09 1B4R 1 VERSN REVDAT 2 29-DEC-99 1B4R 4 HEADER COMPND REMARK JRNL REVDAT 2 2 4 ATOM SOURCE SEQRES REVDAT 1 06-JAN-99 1B4R 0 JRNL AUTH M.BYCROFT,A.BATEMAN,J.CLARKE,S.J.HAMILL,R.SANDFORD, JRNL AUTH 2 R.L.THOMAS,C.CHOTHIA JRNL TITL THE STRUCTURE OF A PKD DOMAIN FROM POLYCYSTIN-1: JRNL TITL 2 IMPLICATIONS FOR POLYCYSTIC KIDNEY DISEASE. JRNL REF EMBO J. V. 18 297 1999 JRNL REFN ISSN 0261-4189 JRNL PMID 9889186 JRNL DOI 10.1093/EMBOJ/18.2.297 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1B4R COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE DEPOSITION ID IS D_1000008305. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX 500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XPLOR REMARK 210 METHOD USED : SA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 14 164.17 174.51 REMARK 500 1 ALA A 29 -62.26 176.56 REMARK 500 1 LEU A 31 -64.58 -13.13 REMARK 500 1 ASP A 42 35.70 -98.49 REMARK 500 1 ALA A 45 -90.70 -71.20 REMARK 500 1 PRO A 52 40.09 -88.43 REMARK 500 1 ALA A 54 -168.86 -165.88 REMARK 500 1 GLU A 86 -159.41 -110.59 REMARK 500 2 HIS A 14 -36.82 161.94 REMARK 500 2 HIS A 26 147.61 -172.47 REMARK 500 2 ALA A 29 -70.06 172.80 REMARK 500 2 ASP A 42 33.07 -97.04 REMARK 500 2 ALA A 45 -86.96 -75.30 REMARK 500 2 PRO A 52 38.91 -88.50 REMARK 500 2 ALA A 54 -169.64 -165.18 REMARK 500 2 GLU A 86 -160.98 -102.45 REMARK 500 3 HIS A 14 -38.87 168.90 REMARK 500 3 ALA A 29 -61.86 175.25 REMARK 500 3 LEU A 31 -64.03 -15.42 REMARK 500 3 ALA A 35 149.43 -178.60 REMARK 500 3 ALA A 45 -98.28 -71.38 REMARK 500 3 PRO A 52 42.63 -88.43 REMARK 500 4 HIS A 14 -35.63 159.11 REMARK 500 4 ALA A 29 -71.85 172.56 REMARK 500 4 ASP A 42 -104.71 -109.06 REMARK 500 4 ALA A 45 -85.01 -81.20 REMARK 500 4 PRO A 52 41.75 -88.45 REMARK 500 4 GLU A 86 -154.87 -126.58 REMARK 500 5 HIS A 14 175.28 152.25 REMARK 500 5 HIS A 26 149.52 -174.93 REMARK 500 5 ALA A 29 -72.36 170.88 REMARK 500 5 ASP A 42 -103.32 -105.42 REMARK 500 5 ALA A 45 -85.37 -81.49 REMARK 500 5 PRO A 52 40.79 -88.83 REMARK 500 5 ALA A 54 -167.67 -171.59 REMARK 500 6 HIS A 14 -37.50 163.16 REMARK 500 6 ALA A 29 -69.60 169.18 REMARK 500 6 ASP A 42 -104.48 -104.25 REMARK 500 6 ALA A 45 -85.40 -80.74 REMARK 500 6 PRO A 52 38.99 -88.96 REMARK 500 6 ALA A 54 -166.79 -163.61 REMARK 500 6 ALA A 74 -0.38 71.53 REMARK 500 6 GLU A 86 -157.32 -107.66 REMARK 500 7 HIS A 14 -33.98 158.87 REMARK 500 7 HIS A 26 148.51 -173.95 REMARK 500 7 ALA A 29 -71.54 172.31 REMARK 500 7 ASP A 42 35.60 -98.34 REMARK 500 7 ALA A 45 -89.99 -75.58 REMARK 500 7 PRO A 52 40.99 -88.97 REMARK 500 7 ALA A 54 -167.05 -171.55 REMARK 500 REMARK 500 THIS ENTRY HAS 134 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 37 0.32 SIDE CHAIN REMARK 500 1 ARG A 57 0.22 SIDE CHAIN REMARK 500 1 ARG A 63 0.15 SIDE CHAIN REMARK 500 2 ARG A 37 0.21 SIDE CHAIN REMARK 500 2 ARG A 57 0.31 SIDE CHAIN REMARK 500 2 ARG A 63 0.30 SIDE CHAIN REMARK 500 3 ARG A 37 0.32 SIDE CHAIN REMARK 500 3 ARG A 57 0.32 SIDE CHAIN REMARK 500 3 ARG A 63 0.24 SIDE CHAIN REMARK 500 4 ARG A 37 0.26 SIDE CHAIN REMARK 500 4 ARG A 57 0.19 SIDE CHAIN REMARK 500 4 ARG A 63 0.32 SIDE CHAIN REMARK 500 5 ARG A 37 0.19 SIDE CHAIN REMARK 500 5 ARG A 57 0.14 SIDE CHAIN REMARK 500 5 ARG A 63 0.25 SIDE CHAIN REMARK 500 6 ARG A 37 0.32 SIDE CHAIN REMARK 500 6 ARG A 57 0.24 SIDE CHAIN REMARK 500 6 ARG A 63 0.28 SIDE CHAIN REMARK 500 7 ARG A 37 0.16 SIDE CHAIN REMARK 500 7 ARG A 57 0.17 SIDE CHAIN REMARK 500 7 ARG A 63 0.25 SIDE CHAIN REMARK 500 8 ARG A 37 0.21 SIDE CHAIN REMARK 500 8 ARG A 57 0.16 SIDE CHAIN REMARK 500 8 ARG A 63 0.23 SIDE CHAIN REMARK 500 9 ARG A 37 0.31 SIDE CHAIN REMARK 500 9 ARG A 57 0.26 SIDE CHAIN REMARK 500 9 ARG A 63 0.26 SIDE CHAIN REMARK 500 10 ARG A 37 0.24 SIDE CHAIN REMARK 500 10 ARG A 57 0.20 SIDE CHAIN REMARK 500 10 ARG A 63 0.31 SIDE CHAIN REMARK 500 11 ARG A 37 0.23 SIDE CHAIN REMARK 500 11 ARG A 57 0.17 SIDE CHAIN REMARK 500 11 ARG A 63 0.31 SIDE CHAIN REMARK 500 12 ARG A 37 0.32 SIDE CHAIN REMARK 500 12 ARG A 57 0.16 SIDE CHAIN REMARK 500 12 ARG A 63 0.30 SIDE CHAIN REMARK 500 13 ARG A 37 0.28 SIDE CHAIN REMARK 500 13 ARG A 57 0.18 SIDE CHAIN REMARK 500 13 ARG A 63 0.32 SIDE CHAIN REMARK 500 14 ARG A 37 0.31 SIDE CHAIN REMARK 500 14 ARG A 57 0.19 SIDE CHAIN REMARK 500 14 ARG A 63 0.24 SIDE CHAIN REMARK 500 15 ARG A 37 0.32 SIDE CHAIN REMARK 500 15 ARG A 57 0.32 SIDE CHAIN REMARK 500 15 ARG A 63 0.24 SIDE CHAIN REMARK 500 16 ARG A 37 0.24 SIDE CHAIN REMARK 500 16 ARG A 57 0.21 SIDE CHAIN REMARK 500 16 ARG A 63 0.29 SIDE CHAIN REMARK 500 17 ARG A 37 0.30 SIDE CHAIN REMARK 500 17 ARG A 57 0.17 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 59 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1B4R A 8 87 UNP P98161 PKD1_HUMAN 275 354 SEQADV 1B4R ALA A 28 UNP P98161 ASP 302 CONFLICT SEQRES 1 A 80 ALA THR LEU VAL GLY PRO HIS GLY PRO LEU ALA SER GLY SEQRES 2 A 80 GLN LEU ALA ALA PHE HIS ILE ALA ALA PRO LEU PRO VAL SEQRES 3 A 80 THR ALA THR ARG TRP ASP PHE GLY ASP GLY SER ALA GLU SEQRES 4 A 80 VAL ASP ALA ALA GLY PRO ALA ALA SER HIS ARG TYR VAL SEQRES 5 A 80 LEU PRO GLY ARG TYR HIS VAL THR ALA VAL LEU ALA LEU SEQRES 6 A 80 GLY ALA GLY SER ALA LEU LEU GLY THR ASP VAL GLN VAL SEQRES 7 A 80 GLU ALA SHEET 1 A 3 THR A 9 VAL A 11 0 SHEET 2 A 3 GLN A 21 ALA A 28 -1 N ALA A 28 O THR A 9 SHEET 3 A 3 ALA A 53 TYR A 58 -1 N TYR A 58 O GLN A 21 SHEET 1 B 4 GLU A 46 ALA A 50 0 SHEET 2 B 4 ALA A 35 ASP A 39 -1 N TRP A 38 O VAL A 47 SHEET 3 B 4 GLY A 62 ALA A 71 -1 N ALA A 71 O ALA A 35 SHEET 4 B 4 SER A 76 VAL A 85 -1 N VAL A 85 O GLY A 62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1