data_1BAU # _entry.id 1BAU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1BAU pdb_00001bau 10.2210/pdb1bau/pdb WWPDB D_1000171538 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1BAU _pdbx_database_status.recvd_initial_deposition_date 1998-04-18 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mujeeb, A.' 1 'Clever, J.L.' 2 'Billeci, T.M.' 3 'James, T.L.' 4 'Parslow, T.G.' 5 # _citation.id primary _citation.title 'Structure of the dimer initiation complex of HIV-1 genomic RNA.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 5 _citation.page_first 432 _citation.page_last 436 _citation.year 1998 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9628479 _citation.pdbx_database_id_DOI 10.1038/nsb0698-432 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mujeeb, A.' 1 ? primary 'Clever, J.L.' 2 ? primary 'Billeci, T.M.' 3 ? primary 'James, T.L.' 4 ? primary 'Parslow, T.G.' 5 ? # _cell.entry_id 1BAU _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BAU _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'SL1 RNA DIMER' _entity.formula_weight 7417.488 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'HIV-1 PACKAGING SIGNAL, RESIDUE 248-270' _entity.details 'ENGINEERED SEQUENCE IN THE LOWER STEM REGION' # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCAAUGAAGCGCGCACGUUGCC _entity_poly.pdbx_seq_one_letter_code_can GGCAAUGAAGCGCGCACGUUGCC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 A n 1 5 A n 1 6 U n 1 7 G n 1 8 A n 1 9 A n 1 10 G n 1 11 C n 1 12 G n 1 13 C n 1 14 G n 1 15 C n 1 16 A n 1 17 C n 1 18 G n 1 19 U n 1 20 U n 1 21 G n 1 22 C n 1 23 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'RNA SYNTHESIZED USING T7 RNA TRANSCRIPTION' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1BAU _struct_ref.pdbx_db_accession 1BAU _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1BAU A 1 ? 23 ? 1BAU 1 ? 23 ? 1 23 2 1 1BAU B 1 ? 23 ? 1BAU 1 ? 23 ? 1 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOE IN D2O' 1 2 1 '2D NOE IN WATER' 1 3 1 DQF-COSY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 6.4 _pdbx_nmr_exptl_sample_conditions.ionic_strength '100 mM NACL' _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents 'D2O AND H2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model UNITYPLUS _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 600 # _pdbx_nmr_refine.entry_id 1BAU _pdbx_nmr_refine.method ? _pdbx_nmr_refine.details ;RANDOMLY GENERATED STRUCTURES WERE FOLDED IN DYANA USING NMR DRIVEN STRUCTURAL RESTRAINTS. 34 STRUCTURES SHOWING LOWEST TARGET FUNCTION VALUES AND NO CONSISTENT VIOLATIONS OF NMR RESTRAINTS WERE INDIVIDUALLY SUBJECTED TO RESTRAINED ENERGY MINIMIZATION IN AMBER 4.1. FOR DETAILS OF REFINEMENT PROTOCOL, PLEASE REFER TO THE REFERENCE ABOVE. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1BAU _pdbx_nmr_details.text ;INTERPROTON-DISTANCE INFORMATION (IN THE FORM OF NOE CROSS-PEAKS) WAS COLLECTED FROM 2D NOE EXPERIMENTS IN D2O AS WELL AS IN 90% H2O FOR NON-EXCHANGEABLE AND EXCHANGEABLE PROTONS, RESPECTIVELY. 2D NOE EXPERIMENTS WERE CARRIED OUT AT 50, 80, 200 AND 400 M SEC MIXING TIMES. COUPLING CONSTANTS AND SUGAR CONFORMATIONS WERE DEDUCED FROM DQF-COSY EXPERIMENTS. ; # _pdbx_nmr_ensemble.entry_id 1BAU _pdbx_nmr_ensemble.conformers_calculated_total_number 34 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'LOWEST NMR CONSTRAINT VIOLATIONS AND LOWEST AMBER ENERGY.' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement DYANA 1.4 GUNTERT,WUTHRICH 1 'structure solution' DYANA ? ? 2 'structure solution' Amber 4.1 ? 3 # _exptl.entry_id 1BAU _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1BAU _struct.title 'NMR STRUCTURE OF THE DIMER INITIATION COMPLEX OF HIV-1 GENOMIC RNA, MINIMIZED AVERAGE STRUCTURE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1BAU _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RIBONUCLEIC ACID, HIV-1, DIMERIZATION, ENCAPSIDATION, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 23 N3 ? ? A G 1 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 23 O2 ? ? A G 1 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 23 N4 ? ? A G 1 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 2 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 2 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 2 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 21 N1 ? ? A C 3 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 21 O6 ? ? A C 3 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 21 N2 ? ? A C 3 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 20 N3 ? ? A A 4 A U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 20 O4 ? ? A A 4 A U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 19 N3 ? ? A A 5 A U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 19 O4 ? ? A A 5 A U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A G 18 O6 ? ? A U 6 A G 18 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? A U 6 O2 ? ? ? 1_555 A G 18 N1 ? ? A U 6 A G 18 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog16 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 17 N3 ? ? A G 7 A C 17 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog17 hydrog ? ? A A 9 N6 ? ? ? 1_555 B A 16 N3 ? ? A A 9 B A 16 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog18 hydrog ? ? A G 10 N1 ? ? ? 1_555 B G 14 O6 ? ? A G 10 B G 14 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog19 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 13 O2 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog23 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 13 N3 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog24 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog25 hydrog ? ? A G 14 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 14 B C 11 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog26 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A A 16 N3 ? ? ? 1_555 B A 9 N6 ? ? A A 16 B A 9 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog30 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 23 N3 ? ? B G 1 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 23 O2 ? ? B G 1 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 23 N4 ? ? B G 1 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 22 N3 ? ? B G 2 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 22 O2 ? ? B G 2 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 22 N4 ? ? B G 2 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B C 3 N3 ? ? ? 1_555 B G 21 N1 ? ? B C 3 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B C 3 N4 ? ? ? 1_555 B G 21 O6 ? ? B C 3 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B C 3 O2 ? ? ? 1_555 B G 21 N2 ? ? B C 3 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 20 N3 ? ? B A 4 B U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 20 O4 ? ? B A 4 B U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B A 5 N1 ? ? ? 1_555 B U 19 N3 ? ? B A 5 B U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B A 5 N6 ? ? ? 1_555 B U 19 O4 ? ? B A 5 B U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B U 6 N3 ? ? ? 1_555 B G 18 O6 ? ? B U 6 B G 18 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog44 hydrog ? ? B U 6 O2 ? ? ? 1_555 B G 18 N1 ? ? B U 6 B G 18 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog45 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 17 N3 ? ? B G 7 B C 17 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1BAU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1BAU _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 A 4 4 4 A A A . n A 1 5 A 5 5 5 A A A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 14 G G A . n A 1 15 C 15 15 15 C C A . n A 1 16 A 16 16 16 A A A . n A 1 17 C 17 17 17 C C A . n A 1 18 G 18 18 18 G G A . n A 1 19 U 19 19 19 U U A . n A 1 20 U 20 20 20 U U A . n A 1 21 G 21 21 21 G G A . n A 1 22 C 22 22 22 C C A . n A 1 23 C 23 23 23 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 G 2 2 2 G G B . n B 1 3 C 3 3 3 C C B . n B 1 4 A 4 4 4 A A B . n B 1 5 A 5 5 5 A A B . n B 1 6 U 6 6 6 U U B . n B 1 7 G 7 7 7 G G B . n B 1 8 A 8 8 8 A A B . n B 1 9 A 9 9 9 A A B . n B 1 10 G 10 10 10 G G B . n B 1 11 C 11 11 11 C C B . n B 1 12 G 12 12 12 G G B . n B 1 13 C 13 13 13 C C B . n B 1 14 G 14 14 14 G G B . n B 1 15 C 15 15 15 C C B . n B 1 16 A 16 16 16 A A B . n B 1 17 C 17 17 17 C C B . n B 1 18 G 18 18 18 G G B . n B 1 19 U 19 19 19 U U B . n B 1 20 U 20 20 20 U U B . n B 1 21 G 21 21 21 G G B . n B 1 22 C 22 22 22 C C B . n B 1 23 C 23 23 23 C C B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-04-27 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_pdbx_nmr_software.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DYANA 'model building' . ? 1 AMBER refinement . ? 2 DYANA refinement . ? 3 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H21 A G 12 ? ? O2 B C 13 ? ? 0.32 2 1 O2 A C 13 ? ? H21 B G 12 ? ? 0.74 3 1 H1 A G 12 ? ? N3 B C 13 ? ? 0.80 4 1 C2 A C 13 ? ? H21 B G 12 ? ? 1.08 5 1 O6 A G 12 ? ? H41 B C 13 ? ? 1.13 6 1 N3 A C 13 ? ? H1 B G 12 ? ? 1.14 7 1 N3 A C 11 ? ? H1 B G 14 ? ? 1.19 8 1 O2 A C 11 ? ? H21 B G 14 ? ? 1.23 9 1 C4 A C 11 ? ? H1 B G 14 ? ? 1.26 10 1 H1 A G 14 ? ? H41 B C 11 ? ? 1.27 11 1 N2 A G 12 ? ? O2 B C 13 ? ? 1.27 12 1 H41 A C 11 ? ? C6 B G 14 ? ? 1.30 13 1 C2 A C 11 ? ? H21 B G 14 ? ? 1.31 14 1 H41 A C 13 ? ? O6 B G 12 ? ? 1.33 15 1 H21 A G 12 ? ? C2 B C 13 ? ? 1.34 16 1 N3 A C 11 ? ? H21 B G 14 ? ? 1.38 17 1 N4 A C 11 ? ? H1 B G 14 ? ? 1.39 18 1 O6 A G 14 ? ? H41 B C 11 ? ? 1.40 19 1 H41 A C 11 ? ? N1 B G 14 ? ? 1.41 20 1 H41 A C 11 ? ? O6 B G 14 ? ? 1.44 21 1 O2 A C 13 ? ? N2 B G 12 ? ? 1.47 22 1 H1 A G 14 ? ? N3 B C 11 ? ? 1.50 23 1 H21 A G 10 ? ? O2 B C 15 ? ? 1.54 24 1 C5 A C 17 ? ? H61 B A 9 ? ? 1.58 25 1 OP1 A A 9 ? ? OP1 B A 9 ? ? 1.78 26 1 N1 A G 12 ? ? N3 B C 13 ? ? 1.78 27 1 C5 A C 17 ? ? N6 B A 9 ? ? 1.86 28 1 N4 A C 11 ? ? O6 B G 14 ? ? 1.89 29 1 N3 A C 11 ? ? N1 B G 14 ? ? 1.91 30 1 N6 A A 9 ? ? C5 B C 17 ? ? 1.92 31 1 N3 A C 13 ? ? N1 B G 12 ? ? 1.97 32 1 N4 A C 11 ? ? N1 B G 14 ? ? 1.99 33 1 O2 A C 11 ? ? N2 B G 14 ? ? 2.00 34 1 C6 A C 17 ? ? N6 B A 9 ? ? 2.02 35 1 N3 A C 11 ? ? N2 B G 14 ? ? 2.02 36 1 C2 A C 13 ? ? N2 B G 12 ? ? 2.10 37 1 O6 A G 14 ? ? N4 B C 11 ? ? 2.12 38 1 O6 A G 12 ? ? N4 B C 13 ? ? 2.15 39 1 N4 A C 11 ? ? C6 B G 14 ? ? 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C6 A A 9 ? ? N1 A A 9 ? ? 1.299 1.351 -0.052 0.007 N 2 1 C6 B A 9 ? ? N1 B A 9 ? ? 1.300 1.351 -0.051 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C5 A A 4 ? ? C6 A A 4 ? ? N1 A A 4 ? ? 120.82 117.70 3.12 0.50 N 2 1 "O4'" A U 6 ? ? "C1'" A U 6 ? ? N1 A U 6 ? ? 112.84 108.50 4.34 0.70 N 3 1 C8 A G 7 ? ? N9 A G 7 ? ? C4 A G 7 ? ? 103.49 106.40 -2.91 0.40 N 4 1 "C4'" A A 8 ? ? "C3'" A A 8 ? ? "C2'" A A 8 ? ? 93.33 102.60 -9.27 1.00 N 5 1 "C3'" A A 8 ? ? "C2'" A A 8 ? ? "C1'" A A 8 ? ? 107.38 101.50 5.88 0.80 N 6 1 N9 A A 8 ? ? "C1'" A A 8 ? ? "C2'" A A 8 ? ? 122.22 114.00 8.22 1.30 N 7 1 C2 A A 8 ? ? N3 A A 8 ? ? C4 A A 8 ? ? 113.74 110.60 3.14 0.50 N 8 1 C5 A A 8 ? ? C6 A A 8 ? ? N1 A A 8 ? ? 120.94 117.70 3.24 0.50 N 9 1 N1 A A 8 ? ? C6 A A 8 ? ? N6 A A 8 ? ? 111.79 118.60 -6.81 0.60 N 10 1 "C5'" A A 9 ? ? "C4'" A A 9 ? ? "O4'" A A 9 ? ? 117.16 109.80 7.36 0.90 N 11 1 C5 A A 9 ? ? N7 A A 9 ? ? C8 A A 9 ? ? 100.52 103.90 -3.38 0.50 N 12 1 N7 A A 9 ? ? C8 A A 9 ? ? N9 A A 9 ? ? 117.52 113.80 3.72 0.50 N 13 1 C8 A A 9 ? ? N9 A A 9 ? ? C4 A A 9 ? ? 103.05 105.80 -2.75 0.40 N 14 1 N1 A A 9 ? ? C6 A A 9 ? ? N6 A A 9 ? ? 113.97 118.60 -4.63 0.60 N 15 1 "O4'" A G 10 ? ? "C1'" A G 10 ? ? N9 A G 10 ? ? 117.91 108.50 9.41 0.70 N 16 1 "C5'" A C 11 ? ? "C4'" A C 11 ? ? "O4'" A C 11 ? ? 119.80 109.80 10.00 0.90 N 17 1 "O4'" A C 11 ? ? "C1'" A C 11 ? ? N1 A C 11 ? ? 115.74 108.50 7.24 0.70 N 18 1 N1 A C 11 ? ? C2 A C 11 ? ? O2 A C 11 ? ? 123.66 118.90 4.76 0.60 N 19 1 N3 A C 11 ? ? C2 A C 11 ? ? O2 A C 11 ? ? 116.70 121.90 -5.20 0.70 N 20 1 "C5'" A C 13 ? ? "C4'" A C 13 ? ? "O4'" A C 13 ? ? 118.91 109.80 9.11 0.90 N 21 1 "O4'" A C 13 ? ? "C1'" A C 13 ? ? N1 A C 13 ? ? 115.27 108.50 6.77 0.70 N 22 1 N3 A C 13 ? ? C2 A C 13 ? ? O2 A C 13 ? ? 117.60 121.90 -4.30 0.70 N 23 1 "O4'" A C 15 ? ? "C1'" A C 15 ? ? N1 A C 15 ? ? 115.93 108.50 7.43 0.70 N 24 1 "C3'" A A 16 ? ? "C2'" A A 16 ? ? "C1'" A A 16 ? ? 108.55 101.50 7.05 0.80 N 25 1 C2 A A 16 ? ? N3 A A 16 ? ? C4 A A 16 ? ? 113.70 110.60 3.10 0.50 N 26 1 C5 A A 16 ? ? C6 A A 16 ? ? N1 A A 16 ? ? 120.91 117.70 3.21 0.50 N 27 1 C5 A A 16 ? ? N7 A A 16 ? ? C8 A A 16 ? ? 100.54 103.90 -3.36 0.50 N 28 1 N7 A A 16 ? ? C8 A A 16 ? ? N9 A A 16 ? ? 119.96 113.80 6.16 0.50 N 29 1 C8 A A 16 ? ? N9 A A 16 ? ? C4 A A 16 ? ? 100.59 105.80 -5.21 0.40 N 30 1 N1 A A 16 ? ? C6 A A 16 ? ? N6 A A 16 ? ? 114.31 118.60 -4.29 0.60 N 31 1 C6 A C 17 ? ? N1 A C 17 ? ? C2 A C 17 ? ? 116.84 120.30 -3.46 0.40 N 32 1 "O4'" A U 19 ? ? "C1'" A U 19 ? ? N1 A U 19 ? ? 115.91 108.50 7.41 0.70 N 33 1 "O4'" A U 20 ? ? "C1'" A U 20 ? ? N1 A U 20 ? ? 114.72 108.50 6.22 0.70 N 34 1 "O4'" A G 21 ? ? "C1'" A G 21 ? ? N9 A G 21 ? ? 113.23 108.50 4.73 0.70 N 35 1 C5 B A 4 ? ? C6 B A 4 ? ? N1 B A 4 ? ? 120.77 117.70 3.07 0.50 N 36 1 "O4'" B U 6 ? ? "C1'" B U 6 ? ? N1 B U 6 ? ? 112.89 108.50 4.39 0.70 N 37 1 C8 B G 7 ? ? N9 B G 7 ? ? C4 B G 7 ? ? 103.54 106.40 -2.86 0.40 N 38 1 "C4'" B A 8 ? ? "C3'" B A 8 ? ? "C2'" B A 8 ? ? 93.30 102.60 -9.30 1.00 N 39 1 "C3'" B A 8 ? ? "C2'" B A 8 ? ? "C1'" B A 8 ? ? 107.41 101.50 5.91 0.80 N 40 1 N9 B A 8 ? ? "C1'" B A 8 ? ? "C2'" B A 8 ? ? 122.22 114.00 8.22 1.30 N 41 1 C2 B A 8 ? ? N3 B A 8 ? ? C4 B A 8 ? ? 113.77 110.60 3.17 0.50 N 42 1 C5 B A 8 ? ? C6 B A 8 ? ? N1 B A 8 ? ? 120.94 117.70 3.24 0.50 N 43 1 N1 B A 8 ? ? C6 B A 8 ? ? N6 B A 8 ? ? 111.78 118.60 -6.82 0.60 N 44 1 "C5'" B A 9 ? ? "C4'" B A 9 ? ? "O4'" B A 9 ? ? 117.15 109.80 7.35 0.90 N 45 1 C5 B A 9 ? ? N7 B A 9 ? ? C8 B A 9 ? ? 100.56 103.90 -3.34 0.50 N 46 1 N7 B A 9 ? ? C8 B A 9 ? ? N9 B A 9 ? ? 117.51 113.80 3.71 0.50 N 47 1 C8 B A 9 ? ? N9 B A 9 ? ? C4 B A 9 ? ? 103.02 105.80 -2.78 0.40 N 48 1 N1 B A 9 ? ? C6 B A 9 ? ? N6 B A 9 ? ? 113.92 118.60 -4.68 0.60 N 49 1 "O4'" B G 10 ? ? "C1'" B G 10 ? ? N9 B G 10 ? ? 117.80 108.50 9.30 0.70 N 50 1 "C5'" B C 11 ? ? "C4'" B C 11 ? ? "O4'" B C 11 ? ? 119.84 109.80 10.04 0.90 N 51 1 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 115.72 108.50 7.22 0.70 N 52 1 N1 B C 11 ? ? C2 B C 11 ? ? O2 B C 11 ? ? 123.65 118.90 4.75 0.60 N 53 1 N3 B C 11 ? ? C2 B C 11 ? ? O2 B C 11 ? ? 116.65 121.90 -5.25 0.70 N 54 1 "C5'" B C 13 ? ? "C4'" B C 13 ? ? "O4'" B C 13 ? ? 118.98 109.80 9.18 0.90 N 55 1 "O4'" B C 13 ? ? "C1'" B C 13 ? ? N1 B C 13 ? ? 115.30 108.50 6.80 0.70 N 56 1 N3 B C 13 ? ? C2 B C 13 ? ? O2 B C 13 ? ? 117.63 121.90 -4.27 0.70 N 57 1 "O4'" B C 15 ? ? "C1'" B C 15 ? ? N1 B C 15 ? ? 115.95 108.50 7.45 0.70 N 58 1 "C3'" B A 16 ? ? "C2'" B A 16 ? ? "C1'" B A 16 ? ? 108.53 101.50 7.03 0.80 N 59 1 C2 B A 16 ? ? N3 B A 16 ? ? C4 B A 16 ? ? 113.65 110.60 3.05 0.50 N 60 1 C5 B A 16 ? ? C6 B A 16 ? ? N1 B A 16 ? ? 120.85 117.70 3.15 0.50 N 61 1 C5 B A 16 ? ? N7 B A 16 ? ? C8 B A 16 ? ? 100.57 103.90 -3.33 0.50 N 62 1 N7 B A 16 ? ? C8 B A 16 ? ? N9 B A 16 ? ? 119.92 113.80 6.12 0.50 N 63 1 C8 B A 16 ? ? N9 B A 16 ? ? C4 B A 16 ? ? 100.62 105.80 -5.18 0.40 N 64 1 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 114.26 118.60 -4.34 0.60 N 65 1 C6 B C 17 ? ? N1 B C 17 ? ? C2 B C 17 ? ? 116.83 120.30 -3.47 0.40 N 66 1 "O4'" B U 19 ? ? "C1'" B U 19 ? ? N1 B U 19 ? ? 115.94 108.50 7.44 0.70 N 67 1 "O4'" B U 20 ? ? "C1'" B U 20 ? ? N1 B U 20 ? ? 114.73 108.50 6.23 0.70 N 68 1 "O4'" B G 21 ? ? "C1'" B G 21 ? ? N9 B G 21 ? ? 113.22 108.50 4.72 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A A 4 ? ? 0.069 'SIDE CHAIN' 2 1 U A 6 ? ? 0.074 'SIDE CHAIN' 3 1 G A 7 ? ? 0.145 'SIDE CHAIN' 4 1 A A 8 ? ? 0.091 'SIDE CHAIN' 5 1 A A 9 ? ? 0.135 'SIDE CHAIN' 6 1 C A 11 ? ? 0.099 'SIDE CHAIN' 7 1 G A 12 ? ? 0.087 'SIDE CHAIN' 8 1 C A 13 ? ? 0.072 'SIDE CHAIN' 9 1 G A 14 ? ? 0.086 'SIDE CHAIN' 10 1 C A 17 ? ? 0.140 'SIDE CHAIN' 11 1 G A 18 ? ? 0.087 'SIDE CHAIN' 12 1 U A 19 ? ? 0.109 'SIDE CHAIN' 13 1 U A 20 ? ? 0.112 'SIDE CHAIN' 14 1 C A 22 ? ? 0.085 'SIDE CHAIN' 15 1 C A 23 ? ? 0.090 'SIDE CHAIN' 16 1 A B 4 ? ? 0.069 'SIDE CHAIN' 17 1 U B 6 ? ? 0.075 'SIDE CHAIN' 18 1 G B 7 ? ? 0.145 'SIDE CHAIN' 19 1 A B 8 ? ? 0.091 'SIDE CHAIN' 20 1 A B 9 ? ? 0.135 'SIDE CHAIN' 21 1 C B 11 ? ? 0.099 'SIDE CHAIN' 22 1 G B 12 ? ? 0.087 'SIDE CHAIN' 23 1 C B 13 ? ? 0.072 'SIDE CHAIN' 24 1 G B 14 ? ? 0.086 'SIDE CHAIN' 25 1 C B 17 ? ? 0.140 'SIDE CHAIN' 26 1 G B 18 ? ? 0.087 'SIDE CHAIN' 27 1 U B 19 ? ? 0.109 'SIDE CHAIN' 28 1 U B 20 ? ? 0.112 'SIDE CHAIN' 29 1 C B 22 ? ? 0.085 'SIDE CHAIN' 30 1 C B 23 ? ? 0.090 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1BAU 'double helix' 1BAU 'a-form double helix' 1BAU 'bulge loop' 1BAU 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 23 1_555 -0.330 -0.182 -0.191 -15.175 -17.580 0.761 1 A_G1:C23_A A 1 ? A 23 ? 19 1 1 A G 2 1_555 A C 22 1_555 -0.118 -0.038 -0.363 -30.216 -13.579 -3.038 2 A_G2:C22_A A 2 ? A 22 ? 19 1 1 A C 3 1_555 A G 21 1_555 0.636 -0.240 0.204 -6.698 4.404 0.632 3 A_C3:G21_A A 3 ? A 21 ? 19 1 1 A A 4 1_555 A U 20 1_555 0.053 -0.059 -0.427 -2.835 -12.053 -6.203 4 A_A4:U20_A A 4 ? A 20 ? 20 1 1 A A 5 1_555 A U 19 1_555 0.021 0.061 0.389 25.270 -6.241 -4.092 5 A_A5:U19_A A 5 ? A 19 ? 20 1 1 A U 6 1_555 A G 18 1_555 2.254 -0.450 -0.694 37.852 -24.801 -5.908 6 A_U6:G18_A A 6 ? A 18 ? 28 ? 1 A G 7 1_555 A C 17 1_555 3.543 -1.605 -1.557 50.336 -5.592 20.777 7 A_G7:C17_A A 7 ? A 17 ? ? 5 1 B A 9 1_555 A A 16 1_555 -5.587 1.053 -0.911 -43.605 46.952 88.914 8 B_A9:A16_A B 9 ? A 16 ? ? ? 1 B G 10 1_555 A C 15 1_555 -1.209 -0.394 0.946 6.539 2.046 1.828 9 B_G10:C15_A B 10 ? A 15 ? 19 1 1 B C 11 1_555 A G 14 1_555 -1.067 -0.723 -0.293 16.381 -8.893 -9.791 10 B_C11:G14_A B 11 ? A 14 ? ? 1 1 B G 12 1_555 A C 13 1_555 0.617 -0.990 0.695 4.461 0.153 11.309 11 B_G12:C13_A B 12 ? A 13 ? ? ? 1 B C 13 1_555 A G 12 1_555 -0.008 -1.151 0.714 -2.309 -0.220 11.538 12 B_C13:G12_A B 13 ? A 12 ? 22 1 1 B C 15 1_555 A G 10 1_555 0.997 -0.917 1.296 -6.685 0.532 3.417 13 B_C15:G10_A B 15 ? A 10 ? 19 1 1 B A 16 1_555 A A 9 1_555 5.113 0.672 -0.559 42.733 45.056 89.808 14 B_A16:A9_A B 16 ? A 9 ? ? ? 1 B C 17 1_555 B G 7 1_555 -3.543 -1.605 -1.557 -50.345 -5.584 20.761 15 B_C17:G7_B B 17 ? B 7 ? ? 5 1 B G 18 1_555 B U 6 1_555 -2.253 -0.450 -0.694 -37.862 -24.810 -5.923 16 B_G18:U6_B B 18 ? B 6 ? 28 ? 1 B U 19 1_555 B A 5 1_555 -0.021 0.061 0.389 -25.279 -6.219 -4.087 17 B_U19:A5_B B 19 ? B 5 ? 20 1 1 B U 20 1_555 B A 4 1_555 -0.053 -0.059 -0.427 2.804 -12.016 -6.205 18 B_U20:A4_B B 20 ? B 4 ? 20 1 1 B G 21 1_555 B C 3 1_555 -0.636 -0.240 0.203 6.685 4.392 0.630 19 B_G21:C3_B B 21 ? B 3 ? 19 1 1 B C 22 1_555 B G 2 1_555 0.118 -0.038 -0.365 30.230 -13.570 -3.049 20 B_C22:G2_B B 22 ? B 2 ? 19 1 1 B C 23 1_555 B G 1 1_555 0.330 -0.182 -0.191 15.165 -17.574 0.755 21 B_C23:G1_B B 23 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 23 1_555 A G 2 1_555 A C 22 1_555 -0.541 -1.210 3.608 1.596 9.367 30.991 -3.901 1.264 3.089 17.035 -2.903 32.381 1 AA_G1G2:C22C23_AA A 1 ? A 23 ? A 2 ? A 22 ? 1 A G 2 1_555 A C 22 1_555 A C 3 1_555 A G 21 1_555 0.690 -0.646 2.978 -4.435 1.193 32.932 -1.307 -1.868 2.839 2.092 7.777 33.242 2 AA_G2C3:G21C22_AA A 2 ? A 22 ? A 3 ? A 21 ? 1 A C 3 1_555 A G 21 1_555 A A 4 1_555 A U 20 1_555 -0.660 -1.248 3.658 2.779 19.381 25.503 -5.721 1.692 2.126 37.631 -5.395 32.053 3 AA_C3A4:U20G21_AA A 3 ? A 21 ? A 4 ? A 20 ? 1 A A 4 1_555 A U 20 1_555 A A 5 1_555 A U 19 1_555 -0.662 -1.332 2.704 -11.420 -2.381 23.468 -2.365 -1.309 2.833 -5.443 26.111 26.171 4 AA_A4A5:U19U20_AA A 4 ? A 20 ? A 5 ? A 19 ? 1 A A 5 1_555 A U 19 1_555 A U 6 1_555 A G 18 1_555 -0.644 -1.019 3.013 4.841 4.913 38.067 -2.077 1.503 2.766 7.457 -7.349 38.664 5 AA_A5U6:G18U19_AA A 5 ? A 19 ? A 6 ? A 18 ? 1 A U 6 1_555 A G 18 1_555 A G 7 1_555 A C 17 1_555 2.395 -1.249 3.140 -4.867 -15.603 43.505 -0.275 -3.453 3.118 -20.220 6.308 46.334 6 AA_U6G7:C17G18_AA A 6 ? A 18 ? A 7 ? A 17 ? 1 A G 7 1_555 A C 17 1_555 B A 9 1_555 A A 16 1_555 -0.035 -3.108 4.054 -16.813 24.856 35.420 -6.065 -1.374 1.540 34.277 23.185 46.109 7 AB_G7A9:A16C17_AA A 7 ? A 17 ? B 9 ? A 16 ? 1 B A 9 1_555 A A 16 1_555 B G 10 1_555 A C 15 1_555 -3.594 -1.630 3.258 32.359 -20.393 39.744 -0.832 5.416 0.956 -24.297 -38.553 54.617 8 BB_A9G10:C15A16_AA B 9 ? A 16 ? B 10 ? A 15 ? 1 B G 10 1_555 A C 15 1_555 B C 11 1_555 A G 14 1_555 -1.280 -1.554 3.055 3.065 13.964 22.033 -6.362 3.465 1.609 32.503 -7.133 26.217 9 BB_G10C11:G14C15_AA B 10 ? A 15 ? B 11 ? A 14 ? 1 B C 11 1_555 A G 14 1_555 B G 12 1_555 A C 13 1_555 1.144 -0.250 3.892 -7.810 42.909 40.018 -2.917 -1.655 2.402 48.664 8.857 58.522 10 BB_C11G12:C13G14_AA B 11 ? A 14 ? B 12 ? A 13 ? 1 B G 12 1_555 A C 13 1_555 B C 13 1_555 A G 12 1_555 0.000 -2.394 3.281 -0.008 11.810 18.190 -10.079 -0.004 1.467 33.196 0.024 21.661 11 BB_G12C13:G12C13_AA B 12 ? A 13 ? B 13 ? A 12 ? 1 B C 13 1_555 A G 12 1_555 B C 15 1_555 A G 10 1_555 1.094 -1.653 5.841 8.588 52.330 66.797 -3.488 -0.455 4.021 41.631 -6.832 83.330 12 BB_C13C15:G10G12_AA B 13 ? A 12 ? B 15 ? A 10 ? 1 B C 15 1_555 A G 10 1_555 B A 16 1_555 A A 9 1_555 3.583 -1.619 3.280 -32.560 -20.237 39.802 -0.822 -5.410 0.960 -24.071 38.730 54.717 13 BB_C15A16:A9G10_AA B 15 ? A 10 ? B 16 ? A 9 ? 1 B A 16 1_555 A A 9 1_555 B C 17 1_555 B G 7 1_555 -0.307 -3.191 4.147 16.152 23.934 35.716 -6.198 1.802 1.556 33.168 -22.384 45.629 14 BB_A16C17:G7A9_BA B 16 ? A 9 ? B 17 ? B 7 ? 1 B C 17 1_555 B G 7 1_555 B G 18 1_555 B U 6 1_555 -2.396 -1.249 3.139 4.868 -15.601 43.507 -0.276 3.454 3.118 -20.218 -6.308 46.335 15 BB_C17G18:U6G7_BB B 17 ? B 7 ? B 18 ? B 6 ? 1 B G 18 1_555 B U 6 1_555 B U 19 1_555 B A 5 1_555 0.644 -1.019 3.013 -4.849 4.918 38.068 -2.077 -1.504 2.766 7.465 7.360 38.667 16 BB_G18U19:A5U6_BB B 18 ? B 6 ? B 19 ? B 5 ? 1 B U 19 1_555 B A 5 1_555 B U 20 1_555 B A 4 1_555 0.661 -1.332 2.704 11.416 -2.382 23.461 -2.365 1.312 2.833 -5.447 -26.108 26.163 17 BB_U19U20:A4A5_BB B 19 ? B 5 ? B 20 ? B 4 ? 1 B U 20 1_555 B A 4 1_555 B G 21 1_555 B C 3 1_555 0.660 -1.248 3.657 -2.775 19.376 25.507 -5.720 -1.691 2.127 37.619 5.388 32.053 18 BB_U20G21:C3A4_BB B 20 ? B 4 ? B 21 ? B 3 ? 1 B G 21 1_555 B C 3 1_555 B C 22 1_555 B G 2 1_555 -0.690 -0.645 2.977 4.444 1.184 32.933 -1.304 1.869 2.838 2.076 -7.791 33.244 19 BB_G21C22:G2C3_BB B 21 ? B 3 ? B 22 ? B 2 ? 1 B C 22 1_555 B G 2 1_555 B C 23 1_555 B G 1 1_555 0.541 -1.211 3.608 -1.605 9.377 30.989 -3.903 -1.267 3.088 17.053 2.919 32.382 20 BB_C22C23:G1G2_BB B 22 ? B 2 ? B 23 ? B 1 ? #