HEADER COMPLEX (MHC/VIRAL PEPTIDE/RECEPTOR) 12-MAY-98 1BD2 TITLE COMPLEX BETWEEN HUMAN T-CELL RECEPTOR B7, VIRAL PEPTIDE (TAX) AND MHC TITLE 2 CLASS I MOLECULE HLA-A 0201 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA-A 0201; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAINS ALPHA 1, ALPHA 2, ALPHA 3; COMPND 5 SYNONYM: HLA A2 HEAVY CHAIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BETA-2 MICROGLOBULIN; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: TAX PEPTIDE; COMPND 13 CHAIN: C; COMPND 14 FRAGMENT: RESIDUES 11 - 19 FROM TAX PROTEIN OF HUMAN T LYMPHOTROPIC COMPND 15 VIRUS TYPE 1; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: T CELL RECEPTOR ALPHA; COMPND 19 CHAIN: D; COMPND 20 FRAGMENT: EXTRACELLULAR DOMAINS V AND C, RESIDUES 1 - 210; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 5; COMPND 23 MOLECULE: T CELL RECEPTOR BETA; COMPND 24 CHAIN: E; COMPND 25 FRAGMENT: EXTRACELLULAR DOMAINS V AND C, RESIDUES 1 - 247; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: BL21; SOURCE 6 ORGAN: PLASMA; SOURCE 7 CELLULAR_LOCATION: PLASMA MEMBRANE; SOURCE 8 GENE: HLA-A 0201; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: XA90; SOURCE 12 EXPRESSION_SYSTEM_CELLULAR_LOCATION: REFOLDED FROM INCLUSION BODIES; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PHN1; SOURCE 14 MOL_ID: 2; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 CELL_LINE: BL21; SOURCE 19 ORGAN: PLASMA; SOURCE 20 CELLULAR_LOCATION: EXTRACELLULAR; SOURCE 21 GENE: V BETA 12.3 J BETA 2.7 (BV13S1); SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 23 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 24 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 25 EXPRESSION_SYSTEM_CELLULAR_LOCATION: REFOLDED FROM INCLUSION BODIES; SOURCE 26 EXPRESSION_SYSTEM_PLASMID: PLM1; SOURCE 27 MOL_ID: 3; SOURCE 28 ORGANISM_SCIENTIFIC: HUMAN T-LYMPHOTROPIC VIRUS 1; SOURCE 29 ORGANISM_TAXID: 11908; SOURCE 30 MOL_ID: 4; SOURCE 31 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 32 ORGANISM_COMMON: HUMAN; SOURCE 33 ORGANISM_TAXID: 9606; SOURCE 34 CELL_LINE: BL21; SOURCE 35 ORGAN: PLASMA; SOURCE 36 CELL: T-LYMPHOCYTE; SOURCE 37 CELLULAR_LOCATION: PLASMA MEMBRANE; SOURCE 38 GENE: V ALPHA 17.2, J ALPHA 54 (ADV21S1A1N2); SOURCE 39 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 40 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 41 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 42 EXPRESSION_SYSTEM_CELLULAR_LOCATION: REFOLDED FROM INCLUSION BODIES; SOURCE 43 EXPRESSION_SYSTEM_PLASMID: PLM1; SOURCE 44 MOL_ID: 5; SOURCE 45 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 46 ORGANISM_COMMON: HUMAN; SOURCE 47 ORGANISM_TAXID: 9606; SOURCE 48 CELL_LINE: BL21; SOURCE 49 ORGAN: PLASMA; SOURCE 50 CELL: T-LYMPHOCYTE; SOURCE 51 CELLULAR_LOCATION: PLASMA MEMBRANE; SOURCE 52 GENE: V BETA 12.3, J BETA 2.7 (BV13S1); SOURCE 53 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 54 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 55 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 56 EXPRESSION_SYSTEM_CELLULAR_LOCATION: REFOLDED FROM INCLUSION BODIES; SOURCE 57 EXPRESSION_SYSTEM_PLASMID: PLM1 KEYWDS COMPLEX (MHC-VIRAL PEPTIDE-RECEPTOR), COMPLEX (MHC-VIRAL PEPTIDE- KEYWDS 2 RECEPTOR) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.-H.DING,K.J.SMITH,D.N.GARBOCZI,U.UTZ,W.E.BIDDISON,D.C.WILEY REVDAT 4 02-AUG-23 1BD2 1 SEQADV REVDAT 3 25-MAY-16 1BD2 1 SOURCE VERSN REVDAT 2 24-FEB-09 1BD2 1 VERSN REVDAT 1 19-AUG-98 1BD2 0 JRNL AUTH Y.H.DING,K.J.SMITH,D.N.GARBOCZI,U.UTZ,W.E.BIDDISON,D.C.WILEY JRNL TITL TWO HUMAN T CELL RECEPTORS BIND IN A SIMILAR DIAGONAL MODE JRNL TITL 2 TO THE HLA-A2/TAX PEPTIDE COMPLEX USING DIFFERENT TCR AMINO JRNL TITL 3 ACIDS. JRNL REF IMMUNITY V. 8 403 1998 JRNL REFN ISSN 1074-7613 JRNL PMID 9586631 JRNL DOI 10.1016/S1074-7613(00)80546-4 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.N.GARBOCZI,P.GHOSH,U.UTZ,Q.R.FAN,W.E.BIDDISON,D.C.WILEY REMARK 1 TITL STRUCTURE OF THE COMPLEX BETWEEN HUMAN T-CELL RECEPTOR, REMARK 1 TITL 2 VIRAL PEPTIDE AND HLA-A2 REMARK 1 REF NATURE V. 384 134 1996 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 31731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.312 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1637 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3450 REMARK 3 BIN R VALUE (WORKING SET) : 0.3800 REMARK 3 BIN FREE R VALUE : 0.4200 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 168 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.032 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6339 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.50 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.58 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.630 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.42 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.421 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.250 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.200 ; 4.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.920 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.330 ; 4.000 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM19.SOL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH19.PEP REMARK 3 TOPOLOGY FILE 2 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BD2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171609. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.908 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33899 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.851 REMARK 200 STARTING MODEL: PDB ENTRIES 1HHI AND 1AO7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG8000, 20MM MOPS, 100MM REMARK 280 MAGNESIUM ACETATE,PH7.1 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.90000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.85000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 108.85000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.90000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 0 REMARK 465 SER D 133 REMARK 465 SER D 134 REMARK 465 ASP D 135 REMARK 465 LYS D 136 REMARK 465 SER D 170 REMARK 465 MET D 171 REMARK 465 ASP D 172 REMARK 465 PHE D 204 REMARK 465 PRO D 205 REMARK 465 SER D 206 REMARK 465 PRO D 207 REMARK 465 GLU D 208 REMARK 465 SER D 209 REMARK 465 SER D 210 REMARK 465 ASN E 1 REMARK 465 ALA E 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 17 CB CG CD NE CZ NH1 NH2 REMARK 470 GLN A 54 CB CG CD OE1 NE2 REMARK 470 ARG A 170 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 177 CB CG CD OE1 OE2 REMARK 470 HIS A 192 CB CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 ASP A 223 CB CG OD1 OD2 REMARK 470 GLN A 226 CG CD OE1 NE2 REMARK 470 ARG A 256 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 264 CG CD OE1 OE2 REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 ARG A 273 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 GLU B 44 CB CG CD OE1 OE2 REMARK 470 GLU B 47 CB CG CD OE1 OE2 REMARK 470 LYS B 58 CB CG CD CE NZ REMARK 470 GLU B 74 CB CG CD OE1 OE2 REMARK 470 LYS D 4 CG CD CE NZ REMARK 470 ARG D 16 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 19 CG1 CG2 CD1 REMARK 470 LEU D 20 CG CD1 CD2 REMARK 470 LYS D 53 CG CD CE NZ REMARK 470 LYS D 54A CG CD CE NZ REMARK 470 LYS D 71 CG CD CE NZ REMARK 470 ILE D 114 CG1 CG2 CD1 REMARK 470 GLN D 119 CG CD OE1 NE2 REMARK 470 ARG D 129 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 132 CG CD CE NZ REMARK 470 SER D 137 OG REMARK 470 LYS D 154 CG CD CE NZ REMARK 470 SER D 156 OG REMARK 470 LYS D 163 CG CD CE NZ REMARK 470 ARG D 169 CG CD NE CZ NH1 NH2 REMARK 470 SER D 185 OG REMARK 470 ASP D 186 CG OD1 OD2 REMARK 470 ASN D 191 CG OD1 ND2 REMARK 470 ASN D 194 CG OD1 ND2 REMARK 470 PRO D 199 CG CD REMARK 470 ASP E 26 CG OD1 OD2 REMARK 470 GLU E 30 CG CD OE1 OE2 REMARK 470 MET E 41 CG SD CE REMARK 470 ARG E 78 CG CD NE CZ NH1 NH2 REMARK 470 ASP E 119 CG OD1 OD2 REMARK 470 LYS E 121 CG CD CE NZ REMARK 470 GLU E 135 CG CD OE1 OE2 REMARK 470 ILE E 138 CG1 CG2 CD1 REMARK 470 GLN E 178 CG CD OE1 NE2 REMARK 470 LYS E 181 CG CD CE NZ REMARK 470 ASP E 188 CG OD1 OD2 REMARK 470 ARG E 190 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 222 CG CD OE1 OE2 REMARK 470 ASN E 223 CG OD1 ND2 REMARK 470 GLU E 225 CG CD OE1 OE2 REMARK 470 THR E 227 OG1 CG2 REMARK 470 ASP E 229 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -133.58 60.62 REMARK 500 LEU A 110 -60.09 -138.16 REMARK 500 HIS A 114 109.91 -174.93 REMARK 500 TYR A 123 -57.75 -124.75 REMARK 500 ALA A 136 -78.74 -62.13 REMARK 500 ASP A 137 -156.73 -102.60 REMARK 500 LYS A 176 -66.88 -27.15 REMARK 500 ASP A 196 34.08 -91.44 REMARK 500 HIS A 197 -19.50 -156.47 REMARK 500 PRO A 210 -169.36 -63.69 REMARK 500 ASP A 220 6.83 59.21 REMARK 500 THR A 225 -66.32 -26.86 REMARK 500 ALA B 15 100.08 -55.02 REMARK 500 HIS B 31 129.52 -170.85 REMARK 500 GLU B 47 -75.68 -58.85 REMARK 500 PHE B 70 145.29 -174.61 REMARK 500 ARG B 97 -1.08 -59.46 REMARK 500 SER D 7 88.41 60.31 REMARK 500 THR D 25 -74.57 -106.26 REMARK 500 ILE D 47 151.05 176.96 REMARK 500 ARG D 61 -25.40 89.98 REMARK 500 ASN D 67 75.28 -154.23 REMARK 500 ALA D 86 172.91 177.01 REMARK 500 GLU D 94 72.29 -118.76 REMARK 500 ASP D 122 89.48 -162.84 REMARK 500 ALA D 124 147.84 -179.09 REMARK 500 SER D 146 8.61 -64.87 REMARK 500 VAL D 150 102.73 73.67 REMARK 500 ASN D 183 59.15 -92.00 REMARK 500 SER D 185 -71.52 -67.82 REMARK 500 ALA D 192 -77.99 -4.47 REMARK 500 ASN D 195 119.35 136.76 REMARK 500 SER D 196 91.14 47.56 REMARK 500 PRO D 199 165.82 64.56 REMARK 500 GLU D 200 74.11 45.48 REMARK 500 THR D 202 172.32 -49.34 REMARK 500 ILE E 46 -60.15 -100.80 REMARK 500 VAL E 60 72.23 -113.92 REMARK 500 ARG E 69 79.18 -152.07 REMARK 500 SER E 81 100.91 -161.15 REMARK 500 ASP E 156 16.34 -67.38 REMARK 500 GLN E 183 72.71 -159.45 REMARK 500 PRO E 233 49.12 -72.70 REMARK 500 ALA E 246 73.21 -179.19 REMARK 500 REMARK 500 REMARK: NULL DBREF 1BD2 A 1 275 UNP P01892 1A02_HUMAN 25 299 DBREF 1BD2 B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 1BD2 D 1 210 GB 338766 AAA60627 28 233 DBREF 1BD2 E 1 247 GB 3002925 AAC08953 20 264 DBREF 1BD2 C 1 9 PDB 1BD2 1BD2 1 9 SEQADV 1BD2 ALA D 56 GB 338766 GLU 84 CONFLICT SEQADV 1BD2 D GB 338766 LYS 119 DELETION SEQADV 1BD2 MET D 93 GB 338766 GLY 120 CONFLICT SEQADV 1BD2 GLU D 94 GB 338766 ALA 121 CONFLICT SEQADV 1BD2 D GB 338766 THR 123 DELETION SEQADV 1BD2 GLN D 102 GB 338766 SER 125 CONFLICT SEQADV 1BD2 VAL D 105 GB 338766 THR 128 CONFLICT SEQADV 1BD2 GLN D 108 GB 338766 THR 131 CONFLICT SEQADV 1BD2 THR D 113 GB 338766 GLN 136 CONFLICT SEQADV 1BD2 ILE D 114 GB 338766 VAL 137 CONFLICT SEQADV 1BD2 ASN D 115 GB 338766 THR 138 CONFLICT SEQADV 1BD2 PRO D 116 GB 338766 LEU 139 CONFLICT SEQADV 1BD2 ASN D 117 GB 338766 ASP 140 CONFLICT SEQADV 1BD2 TYR E 96 GB 3002925 PHE 114 CONFLICT SEQADV 1BD2 GLY E 98 GB 3002925 ARG 116 CONFLICT SEQADV 1BD2 GLY E 99 GB 3002925 GLN 117 CONFLICT SEQADV 1BD2 GLY E 100 GB 3002925 PRO 118 CONFLICT SEQADV 1BD2 PHE E 101 GB 3002925 SER 119 CONFLICT SEQADV 1BD2 E GB 3002925 ASN 121 DELETION SEQADV 1BD2 TYR E 107 GB 3002925 PHE 124 CONFLICT SEQADV 1BD2 THR E 117 GB 3002925 LEU 134 CONFLICT SEQADV 1BD2 ALA E 192 GB 3002925 CYS 209 CONFLICT SEQADV 1BD2 ASP E 206 GB 3002925 ASN 223 CONFLICT SEQRES 1 A 275 GLY SER HIS SER MET ARG TYR PHE PHE THR SER VAL SER SEQRES 2 A 275 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 A 275 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 275 ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP ILE SEQRES 5 A 275 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR ARG SEQRES 6 A 275 LYS VAL LYS ALA HIS SER GLN THR HIS ARG VAL ASP LEU SEQRES 7 A 275 GLY THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 275 SER HIS THR VAL GLN ARG MET TYR GLY CYS ASP VAL GLY SEQRES 9 A 275 SER ASP TRP ARG PHE LEU ARG GLY TYR HIS GLN TYR ALA SEQRES 10 A 275 TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP LEU SEQRES 11 A 275 ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN THR THR SEQRES 12 A 275 LYS HIS LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN LEU SEQRES 13 A 275 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 A 275 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG THR SEQRES 15 A 275 ASP ALA PRO LYS THR HIS MET THR HIS HIS ALA VAL SER SEQRES 16 A 275 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU SER PHE SEQRES 17 A 275 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 A 275 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 275 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 275 VAL VAL PRO SER GLY GLN GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 275 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 A 275 TRP GLU SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 9 LEU LEU PHE GLY TYR PRO VAL TYR VAL SEQRES 1 D 204 GLN GLN VAL LYS GLN ASN SER PRO SER LEU SER VAL GLN SEQRES 2 D 204 GLU GLY ARG ILE SER ILE LEU ASN CYS ASP TYR THR ASN SEQRES 3 D 204 SER MET PHE ASP TYR PHE LEU TRP TYR LYS LYS TYR PRO SEQRES 4 D 204 ALA GLU GLY PRO THR PHE LEU ILE SER ILE SER SER ILE SEQRES 5 D 204 LYS ASP LYS ASN ALA ASP GLY ARG PHE THR VAL PHE LEU SEQRES 6 D 204 ASN LYS SER ALA LYS HIS LEU SER LEU HIS ILE VAL PRO SEQRES 7 D 204 SER GLN PRO GLY ASP SER ALA VAL TYR PHE CYS ALA ALA SEQRES 8 D 204 MET GLU GLY ALA GLN LYS LEU VAL PHE GLY GLN GLY THR SEQRES 9 D 204 ARG LEU THR ILE ASN PRO ASN ILE GLN ASN PRO ASP PRO SEQRES 10 D 204 ALA VAL TYR GLN LEU ARG ASP SER LYS SER SER ASP LYS SEQRES 11 D 204 SER VAL CYS LEU PHE THR ASP PHE ASP SER GLN THR ASN SEQRES 12 D 204 VAL SER GLN SER LYS ASP SER ASP VAL TYR ILE THR ASP SEQRES 13 D 204 LYS THR VAL LEU ASP MET ARG SER MET ASP PHE LYS SER SEQRES 14 D 204 ASN SER ALA VAL ALA TRP SER ASN LYS SER ASP PHE ALA SEQRES 15 D 204 CYS ALA ASN ALA PHE ASN ASN SER ILE ILE PRO GLU ASP SEQRES 16 D 204 THR PHE PHE PRO SER PRO GLU SER SER SEQRES 1 E 244 ASN ALA GLY VAL THR GLN THR PRO LYS PHE GLN VAL LEU SEQRES 2 E 244 LYS THR GLY GLN SER MET THR LEU GLN CYS ALA GLN ASP SEQRES 3 E 244 MET ASN HIS GLU TYR MET SER TRP TYR ARG GLN ASP PRO SEQRES 4 E 244 GLY MET GLY LEU ARG LEU ILE HIS TYR SER VAL GLY ALA SEQRES 5 E 244 GLY ILE THR ASP GLN GLY GLU VAL PRO ASN GLY TYR ASN SEQRES 6 E 244 VAL SER ARG SER THR THR GLU ASP PHE PRO LEU ARG LEU SEQRES 7 E 244 LEU SER ALA ALA PRO SER GLN THR SER VAL TYR PHE CYS SEQRES 8 E 244 ALA SER SER TYR PRO GLY GLY GLY PHE TYR GLU GLN TYR SEQRES 9 E 244 PHE GLY PRO GLY THR ARG LEU THR VAL THR GLU ASP LEU SEQRES 10 E 244 LYS ASN VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SEQRES 11 E 244 SER GLU ALA GLU ILE SER HIS THR GLN LYS ALA THR LEU SEQRES 12 E 244 VAL CYS LEU ALA THR GLY PHE TYR PRO ASP HIS VAL GLU SEQRES 13 E 244 LEU SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SER GLY SEQRES 14 E 244 VAL SER THR ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA SEQRES 15 E 244 LEU ASN ASP SER ARG TYR ALA LEU SER SER ARG LEU ARG SEQRES 16 E 244 VAL SER ALA THR PHE TRP GLN ASP PRO ARG ASN HIS PHE SEQRES 17 E 244 ARG CYS GLN VAL GLN PHE TYR GLY LEU SER GLU ASN ASP SEQRES 18 E 244 GLU TRP THR GLN ASP ARG ALA LYS PRO VAL THR GLN ILE SEQRES 19 E 244 VAL SER ALA GLU ALA TRP GLY ARG ALA ASP FORMUL 6 HOH *39(H2 O) HELIX 1 1 PRO A 57 TYR A 85 1 29 HELIX 2 2 MET A 138 ALA A 149 1 12 HELIX 3 3 VAL A 152 GLU A 161 1 10 HELIX 4 4 THR A 163 ASN A 174 1 12 HELIX 5 5 LYS A 176 LEU A 179 1 4 HELIX 6 6 THR A 225 ASP A 227 5 3 HELIX 7 7 GLN A 253 ARG A 256 5 4 HELIX 8 8 PRO D 82 ASP D 84 5 3 HELIX 9 9 CYS D 189 ALA D 192 1 4 HELIX 10 10 PRO E 84 GLN E 86 5 3 HELIX 11 11 PRO E 97 GLY E 99 5 3 HELIX 12 12 LEU E 120 ASN E 122 5 3 HELIX 13 13 GLU E 135 THR E 141 1 7 HELIX 14 14 ALA E 201 TRP E 204 1 4 SHEET 1 A 7 THR A 31 ASP A 37 0 SHEET 2 A 7 ARG A 21 VAL A 28 -1 N VAL A 28 O THR A 31 SHEET 3 A 7 HIS A 3 VAL A 12 -1 N VAL A 12 O ARG A 21 SHEET 4 A 7 THR A 94 VAL A 103 -1 N VAL A 103 O HIS A 3 SHEET 5 A 7 PHE A 109 TYR A 118 -1 N ALA A 117 O GLN A 96 SHEET 6 A 7 LYS A 121 LEU A 126 -1 N ILE A 124 O TYR A 116 SHEET 7 A 7 TRP A 133 ALA A 135 -1 N THR A 134 O ALA A 125 SHEET 1 B 4 LYS A 186 HIS A 192 0 SHEET 2 B 4 GLU A 198 LEU A 206 -1 N LEU A 206 O LYS A 186 SHEET 3 B 4 LYS A 243 PRO A 250 -1 N VAL A 249 O ALA A 199 SHEET 4 B 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 C 3 THR A 214 ARG A 219 0 SHEET 2 C 3 TYR A 257 GLN A 262 -1 N GLN A 262 O THR A 214 SHEET 3 C 3 LEU A 270 ARG A 273 -1 N LEU A 272 O CYS A 259 SHEET 1 D 3 LYS B 6 SER B 11 0 SHEET 2 D 3 SER B 20 SER B 28 -1 N SER B 28 O LYS B 6 SHEET 3 D 3 LEU B 64 THR B 71 -1 N PHE B 70 O ASN B 21 SHEET 1 E 3 GLU B 36 LYS B 41 0 SHEET 2 E 3 TYR B 78 ASN B 83 -1 N ASN B 83 O GLU B 36 SHEET 3 E 3 LYS B 91 LYS B 94 -1 N VAL B 93 O CYS B 80 SHEET 1 F 5 SER D 9 GLN D 13 0 SHEET 2 F 5 THR D 110 ASN D 115 1 N ARG D 111 O LEU D 10 SHEET 3 F 5 ALA D 86 MET D 93 -1 N TYR D 88 O THR D 110 SHEET 4 F 5 TYR D 31 LYS D 37 -1 N LYS D 37 O VAL D 87 SHEET 5 F 5 PRO D 43 SER D 50 -1 N ILE D 49 O PHE D 32 SHEET 1 G 4 SER D 18 ASP D 23 0 SHEET 2 G 4 HIS D 72 ILE D 77 -1 N ILE D 77 O SER D 18 SHEET 3 G 4 PHE D 62 ASN D 67 -1 N ASN D 67 O HIS D 72 SHEET 4 G 4 LYS D 54A ASP D 57 -1 N ASP D 57 O PHE D 62 SHEET 1 H 2 ALA D 91 MET D 93 0 SHEET 2 H 2 LEU D 104 PHE D 106 -1 N VAL D 105 O ALA D 92 SHEET 1 I 4 ALA D 124 LEU D 128 0 SHEET 2 I 4 VAL D 138 THR D 142 -1 N THR D 142 O ALA D 124 SHEET 3 I 4 LYS D 174 TRP D 181 -1 N ALA D 180 O CYS D 139 SHEET 4 I 4 THR D 164 ASP D 167 -1 N LEU D 166 O SER D 175 SHEET 1 J 2 VAL E 4 THR E 7 0 SHEET 2 J 2 GLN E 22 GLN E 25 -1 N ALA E 24 O THR E 5 SHEET 1 K 5 PHE E 10 LYS E 14 0 SHEET 2 K 5 THR E 112 THR E 117 1 N ARG E 113 O GLN E 11 SHEET 3 K 5 SER E 88 SER E 95 -1 N TYR E 90 O THR E 112 SHEET 4 K 5 TYR E 31 GLN E 37 -1 N GLN E 37 O VAL E 89 SHEET 5 K 5 LEU E 43 SER E 49 -1 N SER E 49 O MET E 32 SHEET 1 L 3 MET E 19 LEU E 21 0 SHEET 2 L 3 LEU E 77 LEU E 79 -1 N LEU E 79 O MET E 19 SHEET 3 L 3 TYR E 65 VAL E 67 -1 N ASN E 66 O ARG E 78 SHEET 1 M 4 GLU E 127 PHE E 131 0 SHEET 2 M 4 LYS E 143 PHE E 153 -1 N THR E 151 O GLU E 127 SHEET 3 M 4 TYR E 191 SER E 200 -1 N VAL E 199 O ALA E 144 SHEET 4 M 4 VAL E 173 THR E 175 -1 N SER E 174 O ARG E 196 SHEET 1 N 4 LYS E 167 VAL E 169 0 SHEET 2 N 4 VAL E 158 VAL E 164 -1 N VAL E 164 O LYS E 167 SHEET 3 N 4 HIS E 210 PHE E 217 -1 N GLN E 216 O GLU E 159 SHEET 4 N 4 GLN E 236 TRP E 243 -1 N ALA E 242 O PHE E 211 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.05 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.04 SSBOND 4 CYS D 22 CYS D 90 1555 1555 2.03 SSBOND 5 CYS D 139 CYS D 189 1555 1555 2.03 SSBOND 6 CYS E 23 CYS E 92 1555 1555 2.01 SSBOND 7 CYS E 148 CYS E 213 1555 1555 2.02 CISPEP 1 TYR A 209 PRO A 210 0 -2.04 CISPEP 2 HIS B 31 PRO B 32 0 0.81 CISPEP 3 VAL D 78 PRO D 79 0 0.05 CISPEP 4 THR E 7 PRO E 8 0 -0.17 CISPEP 5 TYR E 154 PRO E 155 0 -1.59 CRYST1 63.800 73.300 217.700 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015674 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013643 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004593 0.00000