data_1BDV # _entry.id 1BDV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1BDV pdb_00001bdv 10.2210/pdb1bdv/pdb RCSB PD0025 ? ? WWPDB D_1000171637 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1BDV _pdbx_database_status.recvd_initial_deposition_date 1998-05-11 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schildbach, J.F.' 1 'Karzai, A.W.' 2 'Raumann, B.E.' 3 'Sauer, R.T.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Origins of DNA-binding specificity: role of protein contacts with the DNA backbone.' Proc.Natl.Acad.Sci.USA 96 811 817 1999 PNASA6 US 0027-8424 0040 ? 9927650 10.1073/pnas.96.3.811 1 'DNA Recognition by Beta-Sheets in the Arc Repressor-Operator Crystal Structure' Nature 367 754 ? 1994 NATUAS UK 0028-0836 0006 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schildbach, J.F.' 1 ? primary 'Karzai, A.W.' 2 ? primary 'Raumann, B.E.' 3 ? primary 'Sauer, R.T.' 4 ? 1 'Raumann, B.E.' 5 ? 1 'Rould, M.A.' 6 ? 1 'Pabo, C.O.' 7 ? 1 'Sauer, R.T.' 8 ? # _cell.entry_id 1BDV _cell.length_a 62.840 _cell.length_b 56.310 _cell.length_c 52.980 _cell.angle_alpha 90.00 _cell.angle_beta 105.03 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BDV _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*AP*TP*AP*GP*TP*AP*GP*AP*GP*TP*GP*CP*TP*TP*CP*TP*AP*TP*CP*AP*T)-3') ; 6756.387 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*AP*TP*GP*AP*TP*AP*GP*AP*AP*GP*CP*AP*CP*TP*CP*TP*AP*CP*TP*AP*T)-3') ; 6743.404 1 ? ? ? ? 3 polymer man 'PROTEIN (ARC FV10 REPRESSOR)' 6190.229 4 ? F10V ? ? 4 water nat water 18.015 34 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DT)(DA)(DT)(DA)(DG)(DT)(DA)(DG)(DA)(DG)(DT)(DG)(DC)(DT)(DT)(DC)(DT)(DA)(DT)(DC) (DA)(DT) ; TATAGTAGAGTGCTTCTATCAT E ? 2 polydeoxyribonucleotide no no ;(DA)(DA)(DT)(DG)(DA)(DT)(DA)(DG)(DA)(DA)(DG)(DC)(DA)(DC)(DT)(DC)(DT)(DA)(DC)(DT) (DA)(DT) ; AATGATAGAAGCACTCTACTAT F ? 3 'polypeptide(L)' no no MKGMSKMPQVNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRIGA MKGMSKMPQVNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRIGA A,B,C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DT n 1 4 DA n 1 5 DG n 1 6 DT n 1 7 DA n 1 8 DG n 1 9 DA n 1 10 DG n 1 11 DT n 1 12 DG n 1 13 DC n 1 14 DT n 1 15 DT n 1 16 DC n 1 17 DT n 1 18 DA n 1 19 DT n 1 20 DC n 1 21 DA n 1 22 DT n 2 1 DA n 2 2 DA n 2 3 DT n 2 4 DG n 2 5 DA n 2 6 DT n 2 7 DA n 2 8 DG n 2 9 DA n 2 10 DA n 2 11 DG n 2 12 DC n 2 13 DA n 2 14 DC n 2 15 DT n 2 16 DC n 2 17 DT n 2 18 DA n 2 19 DC n 2 20 DT n 2 21 DA n 2 22 DT n 3 1 MET n 3 2 LYS n 3 3 GLY n 3 4 MET n 3 5 SER n 3 6 LYS n 3 7 MET n 3 8 PRO n 3 9 GLN n 3 10 VAL n 3 11 ASN n 3 12 LEU n 3 13 ARG n 3 14 TRP n 3 15 PRO n 3 16 ARG n 3 17 GLU n 3 18 VAL n 3 19 LEU n 3 20 ASP n 3 21 LEU n 3 22 VAL n 3 23 ARG n 3 24 LYS n 3 25 VAL n 3 26 ALA n 3 27 GLU n 3 28 GLU n 3 29 ASN n 3 30 GLY n 3 31 ARG n 3 32 SER n 3 33 VAL n 3 34 ASN n 3 35 SER n 3 36 GLU n 3 37 ILE n 3 38 TYR n 3 39 GLN n 3 40 ARG n 3 41 VAL n 3 42 MET n 3 43 GLU n 3 44 SER n 3 45 PHE n 3 46 LYS n 3 47 LYS n 3 48 GLU n 3 49 GLY n 3 50 ARG n 3 51 ILE n 3 52 GLY n 3 53 ALA n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus 'P22-like viruses' _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Enterobacteria phage P22' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10754 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP RARC_BPP22 3 ? ? ? ? 2 PDB 1BDV 1 ? ? ? ? 3 PDB 1BDV 2 ? ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1BDV A 1 ? 53 ? P03050 1 ? 53 ? 1 53 2 1 1BDV B 1 ? 53 ? P03050 1 ? 53 ? 1 53 3 1 1BDV C 1 ? 53 ? P03050 1 ? 53 ? 1 53 4 1 1BDV D 1 ? 53 ? P03050 1 ? 53 ? 1 53 5 2 1BDV E 1 ? 22 ? 1BDV 1 ? 22 ? 1 22 6 3 1BDV F 1 ? 22 ? 1BDV 1 ? 22 ? 1 22 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1BDV VAL A 10 ? UNP P03050 PHE 10 'engineered mutation' 10 1 2 1BDV VAL B 10 ? UNP P03050 PHE 10 'engineered mutation' 10 2 3 1BDV VAL C 10 ? UNP P03050 PHE 10 'engineered mutation' 10 3 4 1BDV VAL D 10 ? UNP P03050 PHE 10 'engineered mutation' 10 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1BDV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.37 _exptl_crystal.density_percent_sol 48.02 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'pH 6.5' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 400' ? ? ? 1 2 1 GLYCEROL ? ? ? 1 3 1 CACODYLATE ? ? ? 1 4 1 MGCL2 ? ? ? 1 5 1 COBALTHEXAMMINE ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 200 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS II' _diffrn_detector.pdbx_collection_date 1996-11-15 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1BDV _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.8 _reflns.number_obs 8691 _reflns.number_all ? _reflns.percent_possible_obs 97.5 _reflns.pdbx_Rmerge_I_obs 0.0810000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 2 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.0 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 62 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1BDV _refine.ls_number_reflns_obs 8691 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 1000000.0 _refine.pdbx_data_cutoff_low_absF 0.1 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20 _refine.ls_d_res_high 2.8 _refine.ls_percent_reflns_obs 97.5 _refine.ls_R_factor_obs 0.2435000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2435000 _refine.ls_R_factor_R_free 0.3010000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1PAR' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1522 _refine_hist.pdbx_number_atoms_nucleic_acid 896 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 34 _refine_hist.number_atoms_total 2452 _refine_hist.d_res_high 2.8 _refine_hist.d_res_low 20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.373 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 19.5 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.46 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 2.8 _refine_ls_shell.d_res_low 20 _refine_ls_shell.number_reflns_R_work 747 _refine_ls_shell.R_factor_R_work 0.4519000 _refine_ls_shell.percent_reflns_obs 97.5 _refine_ls_shell.R_factor_R_free 0.4423000 _refine_ls_shell.R_factor_R_free_error 0.050 _refine_ls_shell.percent_reflns_R_free 10 _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? -0.511800 0.112700 -0.851700 0.130700 -0.969600 -0.206800 -0.849100 -0.217200 0.481500 63.45470 -8.03550 35.21450 2 given ? 0.535600 0.039500 -0.843500 0.042600 -0.998900 -0.019800 -0.843400 -0.025300 -0.536700 58.08270 -4.33970 105.34710 3 given ? 0.014600 0.119900 -0.992700 0.100400 -0.987900 -0.117900 -0.994800 -0.098000 -0.026400 70.37200 -5.90280 71.22350 # _struct.entry_id 1BDV _struct.title 'ARC FV10 COCRYSTAL' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1BDV _struct_keywords.pdbx_keywords 'GENE REGULATION/DNA' _struct_keywords.text 'GENE-REGULATING PROTEIN, GENE REGULATION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA PRO C 15 ? GLY C 30 ? PRO A 15 GLY A 30 1 ? 16 HELX_P HELX_P2 AB SER C 32 ? GLU C 48 ? SER A 32 GLU A 48 1 ? 17 HELX_P HELX_P3 BA PRO D 15 ? GLY D 30 ? PRO B 15 GLY B 30 1 ? 16 HELX_P HELX_P4 BB SER D 32 ? GLU D 48 ? SER B 32 GLU B 48 1 ? 17 HELX_P HELX_P5 CA PRO E 15 ? GLY E 30 ? PRO C 15 GLY C 30 1 ? 16 HELX_P HELX_P6 CB SER E 32 ? GLU E 48 ? SER C 32 GLU C 48 1 ? 17 HELX_P HELX_P7 DA PRO F 15 ? GLY F 30 ? PRO D 15 GLY D 30 1 ? 16 HELX_P HELX_P8 DB SER F 32 ? GLU F 48 ? SER D 32 GLU D 48 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 22 N3 ? ? E DA 2 F DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 22 O4 ? ? E DA 2 F DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 21 N1 ? ? E DT 3 F DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 21 N6 ? ? E DT 3 F DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 20 N3 ? ? E DA 4 F DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 20 O4 ? ? E DA 4 F DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 19 N3 ? ? E DG 5 F DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 19 O2 ? ? E DG 5 F DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 19 N4 ? ? E DG 5 F DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 18 N1 ? ? E DT 6 F DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 18 N6 ? ? E DT 6 F DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 17 N3 ? ? E DA 7 F DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 17 O4 ? ? E DA 7 F DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 16 N3 ? ? E DG 8 F DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 16 O2 ? ? E DG 8 F DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 16 N4 ? ? E DG 8 F DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 15 N3 ? ? E DA 9 F DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 15 O4 ? ? E DA 9 F DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 14 N3 ? ? E DG 10 F DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 14 O2 ? ? E DG 10 F DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 14 N4 ? ? E DG 10 F DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 13 N1 ? ? E DT 11 F DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 13 N6 ? ? E DT 11 F DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 12 N3 ? ? E DG 12 F DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 12 O2 ? ? E DG 12 F DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 12 N4 ? ? E DG 12 F DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 11 N1 ? ? E DC 13 F DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 11 O6 ? ? E DC 13 F DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 11 N2 ? ? E DC 13 F DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 10 N1 ? ? E DT 14 F DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 10 N6 ? ? E DT 14 F DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DT 15 N3 ? ? ? 1_555 B DA 9 N1 ? ? E DT 15 F DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DT 15 O4 ? ? ? 1_555 B DA 9 N6 ? ? E DT 15 F DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 8 N1 ? ? E DC 16 F DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 8 O6 ? ? E DC 16 F DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 8 N2 ? ? E DC 16 F DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DT 17 N3 ? ? ? 1_555 B DA 7 N1 ? ? E DT 17 F DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DT 17 O4 ? ? ? 1_555 B DA 7 N6 ? ? E DT 17 F DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DA 18 N1 ? ? ? 1_555 B DT 6 N3 ? ? E DA 18 F DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DA 18 N6 ? ? ? 1_555 B DT 6 O4 ? ? E DA 18 F DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DT 19 N3 ? ? ? 1_555 B DA 5 N1 ? ? E DT 19 F DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DT 19 O4 ? ? ? 1_555 B DA 5 N6 ? ? E DT 19 F DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DC 20 N3 ? ? ? 1_555 B DG 4 N1 ? ? E DC 20 F DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DC 20 N4 ? ? ? 1_555 B DG 4 O6 ? ? E DC 20 F DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DC 20 O2 ? ? ? 1_555 B DG 4 N2 ? ? E DC 20 F DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DA 21 N1 ? ? ? 1_555 B DT 3 N3 ? ? E DA 21 F DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DA 21 N6 ? ? ? 1_555 B DT 3 O4 ? ? E DA 21 F DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DT 22 N3 ? ? ? 1_555 B DA 2 N1 ? ? E DT 22 F DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A DT 22 O4 ? ? ? 1_555 B DA 2 N6 ? ? E DT 22 F DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AB ? 2 ? CD ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AB 1 2 ? anti-parallel CD 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AB 1 PRO C 8 ? TRP C 14 ? PRO A 8 TRP A 14 AB 2 PRO D 8 ? TRP D 14 ? PRO B 8 TRP B 14 CD 1 PRO E 8 ? TRP E 14 ? PRO C 8 TRP C 14 CD 2 PRO F 8 ? TRP F 14 ? PRO D 8 TRP D 14 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AB 1 2 N LEU C 12 ? N LEU A 12 O VAL D 10 ? O VAL B 10 CD 1 2 N LEU E 12 ? N LEU C 12 O VAL F 10 ? O VAL D 10 # _database_PDB_matrix.entry_id 1BDV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1BDV _atom_sites.fract_transf_matrix[1][1] 0.015913 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004273 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017759 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019544 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T E . n A 1 2 DA 2 2 2 DA A E . n A 1 3 DT 3 3 3 DT T E . n A 1 4 DA 4 4 4 DA A E . n A 1 5 DG 5 5 5 DG G E . n A 1 6 DT 6 6 6 DT T E . n A 1 7 DA 7 7 7 DA A E . n A 1 8 DG 8 8 8 DG G E . n A 1 9 DA 9 9 9 DA A E . n A 1 10 DG 10 10 10 DG G E . n A 1 11 DT 11 11 11 DT T E . n A 1 12 DG 12 12 12 DG G E . n A 1 13 DC 13 13 13 DC C E . n A 1 14 DT 14 14 14 DT T E . n A 1 15 DT 15 15 15 DT T E . n A 1 16 DC 16 16 16 DC C E . n A 1 17 DT 17 17 17 DT T E . n A 1 18 DA 18 18 18 DA A E . n A 1 19 DT 19 19 19 DT T E . n A 1 20 DC 20 20 20 DC C E . n A 1 21 DA 21 21 21 DA A E . n A 1 22 DT 22 22 22 DT T E . n B 2 1 DA 1 1 1 DA A F . n B 2 2 DA 2 2 2 DA A F . n B 2 3 DT 3 3 3 DT T F . n B 2 4 DG 4 4 4 DG G F . n B 2 5 DA 5 5 5 DA A F . n B 2 6 DT 6 6 6 DT T F . n B 2 7 DA 7 7 7 DA A F . n B 2 8 DG 8 8 8 DG G F . n B 2 9 DA 9 9 9 DA A F . n B 2 10 DA 10 10 10 DA A F . n B 2 11 DG 11 11 11 DG G F . n B 2 12 DC 12 12 12 DC C F . n B 2 13 DA 13 13 13 DA A F . n B 2 14 DC 14 14 14 DC C F . n B 2 15 DT 15 15 15 DT T F . n B 2 16 DC 16 16 16 DC C F . n B 2 17 DT 17 17 17 DT T F . n B 2 18 DA 18 18 18 DA A F . n B 2 19 DC 19 19 19 DC C F . n B 2 20 DT 20 20 20 DT T F . n B 2 21 DA 21 21 21 DA A F . n B 2 22 DT 22 22 22 DT T F . n C 3 1 MET 1 1 ? ? ? A . n C 3 2 LYS 2 2 ? ? ? A . n C 3 3 GLY 3 3 ? ? ? A . n C 3 4 MET 4 4 ? ? ? A . n C 3 5 SER 5 5 ? ? ? A . n C 3 6 LYS 6 6 ? ? ? A . n C 3 7 MET 7 7 7 MET MET A . n C 3 8 PRO 8 8 8 PRO PRO A . n C 3 9 GLN 9 9 9 GLN GLN A . n C 3 10 VAL 10 10 10 VAL VAL A . n C 3 11 ASN 11 11 11 ASN ASN A . n C 3 12 LEU 12 12 12 LEU LEU A . n C 3 13 ARG 13 13 13 ARG ARG A . n C 3 14 TRP 14 14 14 TRP TRP A . n C 3 15 PRO 15 15 15 PRO PRO A . n C 3 16 ARG 16 16 16 ARG ARG A . n C 3 17 GLU 17 17 17 GLU GLU A . n C 3 18 VAL 18 18 18 VAL VAL A . n C 3 19 LEU 19 19 19 LEU LEU A . n C 3 20 ASP 20 20 20 ASP ASP A . n C 3 21 LEU 21 21 21 LEU LEU A . n C 3 22 VAL 22 22 22 VAL VAL A . n C 3 23 ARG 23 23 23 ARG ARG A . n C 3 24 LYS 24 24 24 LYS LYS A . n C 3 25 VAL 25 25 25 VAL VAL A . n C 3 26 ALA 26 26 26 ALA ALA A . n C 3 27 GLU 27 27 27 GLU GLU A . n C 3 28 GLU 28 28 28 GLU GLU A . n C 3 29 ASN 29 29 29 ASN ASN A . n C 3 30 GLY 30 30 30 GLY GLY A . n C 3 31 ARG 31 31 31 ARG ARG A . n C 3 32 SER 32 32 32 SER SER A . n C 3 33 VAL 33 33 33 VAL VAL A . n C 3 34 ASN 34 34 34 ASN ASN A . n C 3 35 SER 35 35 35 SER SER A . n C 3 36 GLU 36 36 36 GLU GLU A . n C 3 37 ILE 37 37 37 ILE ILE A . n C 3 38 TYR 38 38 38 TYR TYR A . n C 3 39 GLN 39 39 39 GLN GLN A . n C 3 40 ARG 40 40 40 ARG ARG A . n C 3 41 VAL 41 41 41 VAL VAL A . n C 3 42 MET 42 42 42 MET MET A . n C 3 43 GLU 43 43 43 GLU GLU A . n C 3 44 SER 44 44 44 SER SER A . n C 3 45 PHE 45 45 45 PHE PHE A . n C 3 46 LYS 46 46 46 LYS LYS A . n C 3 47 LYS 47 47 47 LYS LYS A . n C 3 48 GLU 48 48 48 GLU GLU A . n C 3 49 GLY 49 49 49 GLY GLY A . n C 3 50 ARG 50 50 50 ARG ARG A . n C 3 51 ILE 51 51 51 ILE ILE A . n C 3 52 GLY 52 52 52 GLY GLY A . n C 3 53 ALA 53 53 ? ? ? A . n D 3 1 MET 1 1 1 MET MET B . n D 3 2 LYS 2 2 2 LYS LYS B . n D 3 3 GLY 3 3 3 GLY GLY B . n D 3 4 MET 4 4 4 MET MET B . n D 3 5 SER 5 5 5 SER SER B . n D 3 6 LYS 6 6 6 LYS LYS B . n D 3 7 MET 7 7 7 MET MET B . n D 3 8 PRO 8 8 8 PRO PRO B . n D 3 9 GLN 9 9 9 GLN GLN B . n D 3 10 VAL 10 10 10 VAL VAL B . n D 3 11 ASN 11 11 11 ASN ASN B . n D 3 12 LEU 12 12 12 LEU LEU B . n D 3 13 ARG 13 13 13 ARG ARG B . n D 3 14 TRP 14 14 14 TRP TRP B . n D 3 15 PRO 15 15 15 PRO PRO B . n D 3 16 ARG 16 16 16 ARG ARG B . n D 3 17 GLU 17 17 17 GLU GLU B . n D 3 18 VAL 18 18 18 VAL VAL B . n D 3 19 LEU 19 19 19 LEU LEU B . n D 3 20 ASP 20 20 20 ASP ASP B . n D 3 21 LEU 21 21 21 LEU LEU B . n D 3 22 VAL 22 22 22 VAL VAL B . n D 3 23 ARG 23 23 23 ARG ARG B . n D 3 24 LYS 24 24 24 LYS LYS B . n D 3 25 VAL 25 25 25 VAL VAL B . n D 3 26 ALA 26 26 26 ALA ALA B . n D 3 27 GLU 27 27 27 GLU GLU B . n D 3 28 GLU 28 28 28 GLU GLU B . n D 3 29 ASN 29 29 29 ASN ASN B . n D 3 30 GLY 30 30 30 GLY GLY B . n D 3 31 ARG 31 31 31 ARG ARG B . n D 3 32 SER 32 32 32 SER SER B . n D 3 33 VAL 33 33 33 VAL VAL B . n D 3 34 ASN 34 34 34 ASN ASN B . n D 3 35 SER 35 35 35 SER SER B . n D 3 36 GLU 36 36 36 GLU GLU B . n D 3 37 ILE 37 37 37 ILE ILE B . n D 3 38 TYR 38 38 38 TYR TYR B . n D 3 39 GLN 39 39 39 GLN GLN B . n D 3 40 ARG 40 40 40 ARG ARG B . n D 3 41 VAL 41 41 41 VAL VAL B . n D 3 42 MET 42 42 42 MET MET B . n D 3 43 GLU 43 43 43 GLU GLU B . n D 3 44 SER 44 44 44 SER SER B . n D 3 45 PHE 45 45 45 PHE PHE B . n D 3 46 LYS 46 46 46 LYS LYS B . n D 3 47 LYS 47 47 47 LYS LYS B . n D 3 48 GLU 48 48 48 GLU GLU B . n D 3 49 GLY 49 49 49 GLY GLY B . n D 3 50 ARG 50 50 50 ARG ARG B . n D 3 51 ILE 51 51 51 ILE ILE B . n D 3 52 GLY 52 52 52 GLY GLY B . n D 3 53 ALA 53 53 53 ALA ALA B . n E 3 1 MET 1 1 ? ? ? C . n E 3 2 LYS 2 2 ? ? ? C . n E 3 3 GLY 3 3 ? ? ? C . n E 3 4 MET 4 4 ? ? ? C . n E 3 5 SER 5 5 ? ? ? C . n E 3 6 LYS 6 6 ? ? ? C . n E 3 7 MET 7 7 7 MET MET C . n E 3 8 PRO 8 8 8 PRO PRO C . n E 3 9 GLN 9 9 9 GLN GLN C . n E 3 10 VAL 10 10 10 VAL VAL C . n E 3 11 ASN 11 11 11 ASN ASN C . n E 3 12 LEU 12 12 12 LEU LEU C . n E 3 13 ARG 13 13 13 ARG ARG C . n E 3 14 TRP 14 14 14 TRP TRP C . n E 3 15 PRO 15 15 15 PRO PRO C . n E 3 16 ARG 16 16 16 ARG ARG C . n E 3 17 GLU 17 17 17 GLU GLU C . n E 3 18 VAL 18 18 18 VAL VAL C . n E 3 19 LEU 19 19 19 LEU LEU C . n E 3 20 ASP 20 20 20 ASP ASP C . n E 3 21 LEU 21 21 21 LEU LEU C . n E 3 22 VAL 22 22 22 VAL VAL C . n E 3 23 ARG 23 23 23 ARG ARG C . n E 3 24 LYS 24 24 24 LYS LYS C . n E 3 25 VAL 25 25 25 VAL VAL C . n E 3 26 ALA 26 26 26 ALA ALA C . n E 3 27 GLU 27 27 27 GLU GLU C . n E 3 28 GLU 28 28 28 GLU GLU C . n E 3 29 ASN 29 29 29 ASN ASN C . n E 3 30 GLY 30 30 30 GLY GLY C . n E 3 31 ARG 31 31 31 ARG ARG C . n E 3 32 SER 32 32 32 SER SER C . n E 3 33 VAL 33 33 33 VAL VAL C . n E 3 34 ASN 34 34 34 ASN ASN C . n E 3 35 SER 35 35 35 SER SER C . n E 3 36 GLU 36 36 36 GLU GLU C . n E 3 37 ILE 37 37 37 ILE ILE C . n E 3 38 TYR 38 38 38 TYR TYR C . n E 3 39 GLN 39 39 39 GLN GLN C . n E 3 40 ARG 40 40 40 ARG ARG C . n E 3 41 VAL 41 41 41 VAL VAL C . n E 3 42 MET 42 42 42 MET MET C . n E 3 43 GLU 43 43 43 GLU GLU C . n E 3 44 SER 44 44 44 SER SER C . n E 3 45 PHE 45 45 45 PHE PHE C . n E 3 46 LYS 46 46 46 LYS LYS C . n E 3 47 LYS 47 47 47 LYS LYS C . n E 3 48 GLU 48 48 48 GLU GLU C . n E 3 49 GLY 49 49 49 GLY GLY C . n E 3 50 ARG 50 50 ? ? ? C . n E 3 51 ILE 51 51 ? ? ? C . n E 3 52 GLY 52 52 ? ? ? C . n E 3 53 ALA 53 53 ? ? ? C . n F 3 1 MET 1 1 1 MET MET D . n F 3 2 LYS 2 2 2 LYS LYS D . n F 3 3 GLY 3 3 3 GLY GLY D . n F 3 4 MET 4 4 4 MET MET D . n F 3 5 SER 5 5 5 SER SER D . n F 3 6 LYS 6 6 6 LYS LYS D . n F 3 7 MET 7 7 7 MET MET D . n F 3 8 PRO 8 8 8 PRO PRO D . n F 3 9 GLN 9 9 9 GLN GLN D . n F 3 10 VAL 10 10 10 VAL VAL D . n F 3 11 ASN 11 11 11 ASN ASN D . n F 3 12 LEU 12 12 12 LEU LEU D . n F 3 13 ARG 13 13 13 ARG ARG D . n F 3 14 TRP 14 14 14 TRP TRP D . n F 3 15 PRO 15 15 15 PRO PRO D . n F 3 16 ARG 16 16 16 ARG ARG D . n F 3 17 GLU 17 17 17 GLU GLU D . n F 3 18 VAL 18 18 18 VAL VAL D . n F 3 19 LEU 19 19 19 LEU LEU D . n F 3 20 ASP 20 20 20 ASP ASP D . n F 3 21 LEU 21 21 21 LEU LEU D . n F 3 22 VAL 22 22 22 VAL VAL D . n F 3 23 ARG 23 23 23 ARG ARG D . n F 3 24 LYS 24 24 24 LYS LYS D . n F 3 25 VAL 25 25 25 VAL VAL D . n F 3 26 ALA 26 26 26 ALA ALA D . n F 3 27 GLU 27 27 27 GLU GLU D . n F 3 28 GLU 28 28 28 GLU GLU D . n F 3 29 ASN 29 29 29 ASN ASN D . n F 3 30 GLY 30 30 30 GLY GLY D . n F 3 31 ARG 31 31 31 ARG ARG D . n F 3 32 SER 32 32 32 SER SER D . n F 3 33 VAL 33 33 33 VAL VAL D . n F 3 34 ASN 34 34 34 ASN ASN D . n F 3 35 SER 35 35 35 SER SER D . n F 3 36 GLU 36 36 36 GLU GLU D . n F 3 37 ILE 37 37 37 ILE ILE D . n F 3 38 TYR 38 38 38 TYR TYR D . n F 3 39 GLN 39 39 39 GLN GLN D . n F 3 40 ARG 40 40 40 ARG ARG D . n F 3 41 VAL 41 41 41 VAL VAL D . n F 3 42 MET 42 42 42 MET MET D . n F 3 43 GLU 43 43 43 GLU GLU D . n F 3 44 SER 44 44 44 SER SER D . n F 3 45 PHE 45 45 45 PHE PHE D . n F 3 46 LYS 46 46 46 LYS LYS D . n F 3 47 LYS 47 47 47 LYS LYS D . n F 3 48 GLU 48 48 48 GLU GLU D . n F 3 49 GLY 49 49 49 GLY GLY D . n F 3 50 ARG 50 50 50 ARG ARG D . n F 3 51 ILE 51 51 ? ? ? D . n F 3 52 GLY 52 52 ? ? ? D . n F 3 53 ALA 53 53 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 HOH 1 102 102 HOH HOH E . G 4 HOH 2 103 103 HOH HOH E . G 4 HOH 3 126 126 HOH HOH E . H 4 HOH 1 122 122 HOH HOH F . H 4 HOH 2 133 133 HOH HOH F . H 4 HOH 3 134 134 HOH HOH F . I 4 HOH 1 101 101 HOH HOH A . I 4 HOH 2 104 104 HOH HOH A . I 4 HOH 3 105 105 HOH HOH A . I 4 HOH 4 107 107 HOH HOH A . I 4 HOH 5 108 108 HOH HOH A . I 4 HOH 6 114 114 HOH HOH A . I 4 HOH 7 115 115 HOH HOH A . I 4 HOH 8 118 118 HOH HOH A . I 4 HOH 9 119 119 HOH HOH A . I 4 HOH 10 120 120 HOH HOH A . J 4 HOH 1 106 106 HOH HOH B . J 4 HOH 2 110 110 HOH HOH B . J 4 HOH 3 111 111 HOH HOH B . J 4 HOH 4 112 112 HOH HOH B . J 4 HOH 5 113 113 HOH HOH B . J 4 HOH 6 116 116 HOH HOH B . J 4 HOH 7 117 117 HOH HOH B . K 4 HOH 1 123 123 HOH HOH C . K 4 HOH 2 124 124 HOH HOH C . K 4 HOH 3 127 127 HOH HOH C . K 4 HOH 4 129 129 HOH HOH C . K 4 HOH 5 131 131 HOH HOH C . L 4 HOH 1 109 109 HOH HOH D . L 4 HOH 2 121 121 HOH HOH D . L 4 HOH 3 125 125 HOH HOH D . L 4 HOH 4 128 128 HOH HOH D . L 4 HOH 5 130 130 HOH HOH D . L 4 HOH 6 132 132 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-01-06 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-11-29 5 'Structure model' 1 4 2021-11-03 6 'Structure model' 1 5 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Derived calculations' 4 5 'Structure model' 'Database references' 5 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' struct_conf 2 4 'Structure model' struct_conf_type 3 5 'Structure model' database_2 4 5 'Structure model' struct_ref_seq_dif 5 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement 3.1 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 X-PLOR phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 15 ? ? -39.76 132.74 2 1 ARG C 16 ? ? -29.85 -47.36 3 1 GLU C 48 ? ? -147.57 -49.93 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 17 ? CG ? C GLU 17 CG 2 1 Y 1 A GLU 17 ? CD ? C GLU 17 CD 3 1 Y 1 A GLU 17 ? OE1 ? C GLU 17 OE1 4 1 Y 1 A GLU 17 ? OE2 ? C GLU 17 OE2 5 1 Y 1 A GLU 27 ? CG ? C GLU 27 CG 6 1 Y 1 A GLU 27 ? CD ? C GLU 27 CD 7 1 Y 1 A GLU 27 ? OE1 ? C GLU 27 OE1 8 1 Y 1 A GLU 27 ? OE2 ? C GLU 27 OE2 9 1 Y 1 B LYS 2 ? CG ? D LYS 2 CG 10 1 Y 1 B LYS 2 ? CD ? D LYS 2 CD 11 1 Y 1 B LYS 2 ? CE ? D LYS 2 CE 12 1 Y 1 B LYS 2 ? NZ ? D LYS 2 NZ 13 1 Y 1 B SER 5 ? OG ? D SER 5 OG 14 1 Y 1 B LYS 6 ? CG ? D LYS 6 CG 15 1 Y 1 B LYS 6 ? CD ? D LYS 6 CD 16 1 Y 1 B LYS 6 ? CE ? D LYS 6 CE 17 1 Y 1 B LYS 6 ? NZ ? D LYS 6 NZ 18 1 Y 1 B ARG 16 ? CG ? D ARG 16 CG 19 1 Y 1 B ARG 16 ? CD ? D ARG 16 CD 20 1 Y 1 B ARG 16 ? NE ? D ARG 16 NE 21 1 Y 1 B ARG 16 ? CZ ? D ARG 16 CZ 22 1 Y 1 B ARG 16 ? NH1 ? D ARG 16 NH1 23 1 Y 1 B ARG 16 ? NH2 ? D ARG 16 NH2 24 1 Y 1 B LYS 24 ? CG ? D LYS 24 CG 25 1 Y 1 B LYS 24 ? CD ? D LYS 24 CD 26 1 Y 1 B LYS 24 ? CE ? D LYS 24 CE 27 1 Y 1 B LYS 24 ? NZ ? D LYS 24 NZ 28 1 Y 1 B GLU 27 ? CG ? D GLU 27 CG 29 1 Y 1 B GLU 27 ? CD ? D GLU 27 CD 30 1 Y 1 B GLU 27 ? OE1 ? D GLU 27 OE1 31 1 Y 1 B GLU 27 ? OE2 ? D GLU 27 OE2 32 1 Y 1 B GLU 28 ? CG ? D GLU 28 CG 33 1 Y 1 B GLU 28 ? CD ? D GLU 28 CD 34 1 Y 1 B GLU 28 ? OE1 ? D GLU 28 OE1 35 1 Y 1 B GLU 28 ? OE2 ? D GLU 28 OE2 36 1 Y 1 D LYS 2 ? CG ? F LYS 2 CG 37 1 Y 1 D LYS 2 ? CD ? F LYS 2 CD 38 1 Y 1 D LYS 2 ? CE ? F LYS 2 CE 39 1 Y 1 D LYS 2 ? NZ ? F LYS 2 NZ 40 1 Y 1 D MET 42 ? CG ? F MET 42 CG 41 1 Y 1 D MET 42 ? SD ? F MET 42 SD 42 1 Y 1 D MET 42 ? CE ? F MET 42 CE 43 1 Y 1 D LYS 46 ? CG ? F LYS 46 CG 44 1 Y 1 D LYS 46 ? CD ? F LYS 46 CD 45 1 Y 1 D LYS 46 ? CE ? F LYS 46 CE 46 1 Y 1 D LYS 46 ? NZ ? F LYS 46 NZ 47 1 Y 1 D LYS 47 ? CG ? F LYS 47 CG 48 1 Y 1 D LYS 47 ? CD ? F LYS 47 CD 49 1 Y 1 D LYS 47 ? CE ? F LYS 47 CE 50 1 Y 1 D LYS 47 ? NZ ? F LYS 47 NZ 51 1 Y 1 D GLU 48 ? CG ? F GLU 48 CG 52 1 Y 1 D GLU 48 ? CD ? F GLU 48 CD 53 1 Y 1 D GLU 48 ? OE1 ? F GLU 48 OE1 54 1 Y 1 D GLU 48 ? OE2 ? F GLU 48 OE2 55 1 Y 1 D ARG 50 ? CG ? F ARG 50 CG 56 1 Y 1 D ARG 50 ? CD ? F ARG 50 CD 57 1 Y 1 D ARG 50 ? NE ? F ARG 50 NE 58 1 Y 1 D ARG 50 ? CZ ? F ARG 50 CZ 59 1 Y 1 D ARG 50 ? NH1 ? F ARG 50 NH1 60 1 Y 1 D ARG 50 ? NH2 ? F ARG 50 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? C MET 1 2 1 Y 1 A LYS 2 ? C LYS 2 3 1 Y 1 A GLY 3 ? C GLY 3 4 1 Y 1 A MET 4 ? C MET 4 5 1 Y 1 A SER 5 ? C SER 5 6 1 Y 1 A LYS 6 ? C LYS 6 7 1 Y 1 A ALA 53 ? C ALA 53 8 1 Y 1 C MET 1 ? E MET 1 9 1 Y 1 C LYS 2 ? E LYS 2 10 1 Y 1 C GLY 3 ? E GLY 3 11 1 Y 1 C MET 4 ? E MET 4 12 1 Y 1 C SER 5 ? E SER 5 13 1 Y 1 C LYS 6 ? E LYS 6 14 1 Y 1 C ARG 50 ? E ARG 50 15 1 Y 1 C ILE 51 ? E ILE 51 16 1 Y 1 C GLY 52 ? E GLY 52 17 1 Y 1 C ALA 53 ? E ALA 53 18 1 Y 1 D ILE 51 ? F ILE 51 19 1 Y 1 D GLY 52 ? F GLY 52 20 1 Y 1 D ALA 53 ? F ALA 53 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1BDV 'double helix' 1BDV 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 2 1_555 B DT 22 1_555 -0.463 -0.038 0.169 5.219 -16.129 -1.974 1 E_DA2:DT22_F E 2 ? F 22 ? 20 1 1 A DT 3 1_555 B DA 21 1_555 -0.190 0.001 0.065 -3.931 2.616 6.979 2 E_DT3:DA21_F E 3 ? F 21 ? 20 1 1 A DA 4 1_555 B DT 20 1_555 0.167 -0.304 -0.616 -8.406 -5.457 3.092 3 E_DA4:DT20_F E 4 ? F 20 ? 20 1 1 A DG 5 1_555 B DC 19 1_555 -0.807 -0.341 -0.535 -14.810 6.348 4.623 4 E_DG5:DC19_F E 5 ? F 19 ? 19 1 1 A DT 6 1_555 B DA 18 1_555 -0.488 -0.104 0.085 -9.417 -1.632 -4.766 5 E_DT6:DA18_F E 6 ? F 18 ? 20 1 1 A DA 7 1_555 B DT 17 1_555 -0.469 -0.140 0.272 -1.719 4.754 -1.142 6 E_DA7:DT17_F E 7 ? F 17 ? 20 1 1 A DG 8 1_555 B DC 16 1_555 -0.376 0.113 0.219 8.541 1.082 2.199 7 E_DG8:DC16_F E 8 ? F 16 ? 19 1 1 A DA 9 1_555 B DT 15 1_555 0.316 0.027 -0.406 -1.555 -9.979 2.647 8 E_DA9:DT15_F E 9 ? F 15 ? 20 1 1 A DG 10 1_555 B DC 14 1_555 -0.056 0.075 0.627 8.263 -7.722 2.337 9 E_DG10:DC14_F E 10 ? F 14 ? 19 1 1 A DT 11 1_555 B DA 13 1_555 -0.260 -0.100 0.386 -1.503 -18.968 0.877 10 E_DT11:DA13_F E 11 ? F 13 ? 20 1 1 A DG 12 1_555 B DC 12 1_555 -0.584 0.091 -0.214 -5.206 4.869 7.141 11 E_DG12:DC12_F E 12 ? F 12 ? 19 1 1 A DC 13 1_555 B DG 11 1_555 -0.167 -0.110 0.473 -0.366 -26.434 0.433 12 E_DC13:DG11_F E 13 ? F 11 ? 19 1 1 A DT 14 1_555 B DA 10 1_555 -0.597 0.008 -0.255 -5.261 -20.624 -12.579 13 E_DT14:DA10_F E 14 ? F 10 ? 20 1 1 A DT 15 1_555 B DA 9 1_555 -0.991 -0.135 -0.237 -9.168 -4.686 -6.072 14 E_DT15:DA9_F E 15 ? F 9 ? 20 1 1 A DC 16 1_555 B DG 8 1_555 0.015 -0.189 -0.087 0.173 -11.631 -1.802 15 E_DC16:DG8_F E 16 ? F 8 ? 19 1 1 A DT 17 1_555 B DA 7 1_555 0.464 -0.404 -0.289 6.030 -2.251 0.889 16 E_DT17:DA7_F E 17 ? F 7 ? 20 1 1 A DA 18 1_555 B DT 6 1_555 -0.222 -0.090 0.347 6.780 1.863 2.339 17 E_DA18:DT6_F E 18 ? F 6 ? 20 1 1 A DT 19 1_555 B DA 5 1_555 -0.586 -0.134 -0.167 15.004 -2.675 -9.129 18 E_DT19:DA5_F E 19 ? F 5 ? 20 1 1 A DC 20 1_555 B DG 4 1_555 0.505 -0.194 -0.506 5.600 -4.463 2.219 19 E_DC20:DG4_F E 20 ? F 4 ? 19 1 1 A DA 21 1_555 B DT 3 1_555 -0.205 -0.297 -0.499 -5.294 -1.439 7.763 20 E_DA21:DT3_F E 21 ? F 3 ? 20 1 1 A DT 22 1_555 B DA 2 1_555 0.717 -0.031 -0.219 10.058 -5.997 11.594 21 E_DT22:DA2_F E 22 ? F 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 2 1_555 B DT 22 1_555 A DT 3 1_555 B DA 21 1_555 1.078 -0.987 3.499 0.279 3.348 33.646 -2.269 -1.807 3.397 5.765 -0.480 33.808 1 EE_DA2DT3:DA21DT22_FF E 2 ? F 22 ? E 3 ? F 21 ? 1 A DT 3 1_555 B DA 21 1_555 A DA 4 1_555 B DT 20 1_555 -0.551 -0.918 3.411 0.815 10.228 27.524 -4.000 1.262 2.875 20.611 -1.643 29.340 2 EE_DT3DA4:DT20DA21_FF E 3 ? F 21 ? E 4 ? F 20 ? 1 A DA 4 1_555 B DT 20 1_555 A DG 5 1_555 B DC 19 1_555 -0.382 -0.978 3.458 -2.396 6.677 29.715 -3.224 0.235 3.188 12.792 4.589 30.532 3 EE_DA4DG5:DC19DT20_FF E 4 ? F 20 ? E 5 ? F 19 ? 1 A DG 5 1_555 B DC 19 1_555 A DT 6 1_555 B DA 18 1_555 -0.186 -1.094 3.411 -2.001 7.623 28.223 -3.816 -0.066 3.024 15.260 4.006 29.281 4 EE_DG5DT6:DA18DC19_FF E 5 ? F 19 ? E 6 ? F 18 ? 1 A DT 6 1_555 B DA 18 1_555 A DA 7 1_555 B DT 17 1_555 0.186 0.470 3.311 0.827 -16.796 40.935 2.190 -0.170 2.915 -22.887 -1.127 44.117 5 EE_DT6DA7:DT17DA18_FF E 6 ? F 18 ? E 7 ? F 17 ? 1 A DA 7 1_555 B DT 17 1_555 A DG 8 1_555 B DC 16 1_555 -0.794 -0.127 3.158 1.667 12.481 29.783 -2.344 1.710 2.832 23.029 -3.076 32.280 6 EE_DA7DG8:DC16DT17_FF E 7 ? F 17 ? E 8 ? F 16 ? 1 A DG 8 1_555 B DC 16 1_555 A DA 9 1_555 B DT 15 1_555 0.375 -0.249 3.650 4.189 11.731 30.613 -2.657 0.131 3.353 21.152 -7.553 32.994 7 EE_DG8DA9:DT15DC16_FF E 8 ? F 16 ? E 9 ? F 15 ? 1 A DA 9 1_555 B DT 15 1_555 A DG 10 1_555 B DC 14 1_555 -1.089 0.438 2.867 -10.746 1.903 33.815 0.459 0.320 3.079 3.170 17.904 35.484 8 EE_DA9DG10:DC14DT15_FF E 9 ? F 15 ? E 10 ? F 14 ? 1 A DG 10 1_555 B DC 14 1_555 A DT 11 1_555 B DA 13 1_555 -0.490 -0.592 3.584 2.274 8.342 30.493 -2.730 1.347 3.268 15.475 -4.219 31.667 9 EE_DG10DT11:DA13DC14_FF E 10 ? F 14 ? E 11 ? F 13 ? 1 A DT 11 1_555 B DA 13 1_555 A DG 12 1_555 B DC 12 1_555 1.315 1.029 3.571 0.747 -5.881 37.636 2.377 -1.914 3.402 -9.047 -1.148 38.084 10 EE_DT11DG12:DC12DA13_FF E 11 ? F 13 ? E 12 ? F 12 ? 1 A DG 12 1_555 B DC 12 1_555 A DC 13 1_555 B DG 11 1_555 -1.571 0.773 3.210 -4.413 -11.517 39.320 2.320 1.769 3.028 -16.626 6.371 41.136 11 EE_DG12DC13:DG11DC12_FF E 12 ? F 12 ? E 13 ? F 11 ? 1 A DC 13 1_555 B DG 11 1_555 A DT 14 1_555 B DA 10 1_555 -0.691 -0.798 3.705 0.911 11.432 30.663 -3.573 1.399 3.190 20.730 -1.652 32.690 12 EE_DC13DT14:DA10DG11_FF E 13 ? F 11 ? E 14 ? F 10 ? 1 A DT 14 1_555 B DA 10 1_555 A DT 15 1_555 B DA 9 1_555 1.247 0.242 3.347 0.845 -2.880 34.388 0.865 -1.967 3.345 -4.861 -1.427 34.515 13 EE_DT14DT15:DA9DA10_FF E 14 ? F 10 ? E 15 ? F 9 ? 1 A DT 15 1_555 B DA 9 1_555 A DC 16 1_555 B DG 8 1_555 0.069 -0.205 3.277 -0.710 5.867 33.261 -1.299 -0.233 3.193 10.150 1.228 33.767 14 EE_DT15DC16:DG8DA9_FF E 15 ? F 9 ? E 16 ? F 8 ? 1 A DC 16 1_555 B DG 8 1_555 A DT 17 1_555 B DA 7 1_555 1.223 0.007 3.176 2.976 8.010 30.492 -1.454 -1.698 3.177 14.867 -5.523 31.640 15 EE_DC16DT17:DA7DG8_FF E 16 ? F 8 ? E 17 ? F 7 ? 1 A DT 17 1_555 B DA 7 1_555 A DA 18 1_555 B DT 6 1_555 0.017 0.263 3.449 -1.240 -6.776 36.127 1.384 -0.204 3.345 -10.805 1.977 36.756 16 EE_DT17DA18:DT6DA7_FF E 17 ? F 7 ? E 18 ? F 6 ? 1 A DA 18 1_555 B DT 6 1_555 A DT 19 1_555 B DA 5 1_555 0.011 -1.174 3.182 1.986 0.348 23.117 -3.036 0.638 3.154 0.866 -4.944 23.203 17 EE_DA18DT19:DA5DT6_FF E 18 ? F 6 ? E 19 ? F 5 ? 1 A DT 19 1_555 B DA 5 1_555 A DC 20 1_555 B DG 4 1_555 0.683 -0.946 3.643 4.090 15.658 37.923 -3.173 -0.495 3.090 22.865 -5.973 41.115 18 EE_DT19DC20:DG4DA5_FF E 19 ? F 5 ? E 20 ? F 4 ? 1 A DC 20 1_555 B DG 4 1_555 A DA 21 1_555 B DT 3 1_555 -0.051 -1.087 3.579 -1.606 8.596 28.191 -4.055 -0.258 3.117 17.133 3.201 29.490 19 EE_DC20DA21:DT3DG4_FF E 20 ? F 4 ? E 21 ? F 3 ? 1 A DA 21 1_555 B DT 3 1_555 A DT 22 1_555 B DA 2 1_555 -0.180 -0.476 2.834 -0.845 2.548 34.862 -1.123 0.189 2.796 4.245 1.408 34.962 20 EE_DA21DT22:DA2DT3_FF E 21 ? F 3 ? E 22 ? F 2 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1PAR _pdbx_initial_refinement_model.details 'PDB ENTRY 1PAR' #