data_1BF4 # _entry.id 1BF4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1BF4 pdb_00001bf4 10.2210/pdb1bf4/pdb RCSB PD0088 ? ? WWPDB D_1000171680 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-11-10 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-11-22 5 'Structure model' 1 4 2024-02-07 6 'Structure model' 1 5 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' struct_conn 6 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_conn.pdbx_dist_value' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1BF4 _pdbx_database_status.recvd_initial_deposition_date 1998-05-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Su, S.' 1 'Gao, Y.-G.' 2 'Robinson, H.' 3 'Padmanabhan, S.' 4 'Lim, L.' 5 'Shriver, J.W.' 6 'Wang, A.H.-J.' 7 # _citation.id primary _citation.title 'The crystal structure of the hyperthermophile chromosomal protein Sso7d bound to DNA.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 5 _citation.page_first 782 _citation.page_last 786 _citation.year 1998 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9731772 _citation.pdbx_database_id_DOI 10.1038/1822 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gao, Y.G.' 1 ? primary 'Su, S.Y.' 2 ? primary 'Robinson, H.' 3 ? primary 'Padmanabhan, S.' 4 ? primary 'Lim, L.' 5 ? primary 'McCrary, B.S.' 6 ? primary 'Edmondson, S.P.' 7 ? primary 'Shriver, J.W.' 8 ? primary 'Wang, A.H.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*CP*GP*TP*5IUP*CP*GP*C)-3') ; 2530.461 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*CP*GP*AP*AP*CP*GP*C)-3') ; 2436.619 1 ? ? ? ? 3 polymer man 'PROTEIN (CHROMOSOMAL PROTEIN SSO7D)' 7164.389 1 ? ? ? ? 4 water nat water 18.015 114 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'DNA-BINDING PROTEIN 7D, 7 KD DNA-BINDING PROTEIN D, SSO7D' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DG)(DC)(DG)(DT)(5IU)(DC)(DG)(DC)' GCGTUCGC B ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DG)(DA)(DA)(DC)(DG)(DC)' GCGAACGC C ? 3 'polypeptide(L)' no no ATVKFKYKGEEKEVDISKIKKVWRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQMLEKQKK ATVKFKYKGEEKEVDISKIKKVWRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQMLEKQKK A ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 DT n 1 5 5IU n 1 6 DC n 1 7 DG n 1 8 DC n 2 1 DG n 2 2 DC n 2 3 DG n 2 4 DA n 2 5 DA n 2 6 DC n 2 7 DG n 2 8 DC n 3 1 ALA n 3 2 THR n 3 3 VAL n 3 4 LYS n 3 5 PHE n 3 6 LYS n 3 7 TYR n 3 8 LYS n 3 9 GLY n 3 10 GLU n 3 11 GLU n 3 12 LYS n 3 13 GLU n 3 14 VAL n 3 15 ASP n 3 16 ILE n 3 17 SER n 3 18 LYS n 3 19 ILE n 3 20 LYS n 3 21 LYS n 3 22 VAL n 3 23 TRP n 3 24 ARG n 3 25 VAL n 3 26 GLY n 3 27 LYS n 3 28 MET n 3 29 ILE n 3 30 SER n 3 31 PHE n 3 32 THR n 3 33 TYR n 3 34 ASP n 3 35 GLU n 3 36 GLY n 3 37 GLY n 3 38 GLY n 3 39 LYS n 3 40 THR n 3 41 GLY n 3 42 ARG n 3 43 GLY n 3 44 ALA n 3 45 VAL n 3 46 SER n 3 47 GLU n 3 48 LYS n 3 49 ASP n 3 50 ALA n 3 51 PRO n 3 52 LYS n 3 53 GLU n 3 54 LEU n 3 55 LEU n 3 56 GLN n 3 57 MET n 3 58 LEU n 3 59 GLU n 3 60 LYS n 3 61 GLN n 3 62 LYS n 3 63 LYS n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Sulfolobus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus acidocaldarius' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2285 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5IU 'DNA linking' n "5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 I N2 O8 P' 434.078 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 101 101 DG G B . n A 1 2 DC 2 102 102 DC C B . n A 1 3 DG 3 103 103 DG G B . n A 1 4 DT 4 104 104 DT T B . n A 1 5 5IU 5 105 105 5IU 5IU B . n A 1 6 DC 6 106 106 DC C B . n A 1 7 DG 7 107 107 DG G B . n A 1 8 DC 8 108 108 DC C B . n B 2 1 DG 1 109 109 DG G C . n B 2 2 DC 2 110 110 DC C C . n B 2 3 DG 3 111 111 DG G C . n B 2 4 DA 4 112 112 DA A C . n B 2 5 DA 5 113 113 DA A C . n B 2 6 DC 6 114 114 DC C C . n B 2 7 DG 7 115 115 DG G C . n B 2 8 DC 8 116 116 DC C C . n C 3 1 ALA 1 2 2 ALA ALA A . n C 3 2 THR 2 3 3 THR THR A . n C 3 3 VAL 3 4 4 VAL VAL A . n C 3 4 LYS 4 5 5 LYS LYS A . n C 3 5 PHE 5 6 6 PHE PHE A . n C 3 6 LYS 6 7 7 LYS LYS A . n C 3 7 TYR 7 8 8 TYR TYR A . n C 3 8 LYS 8 9 9 LYS LYS A . n C 3 9 GLY 9 10 10 GLY GLY A . n C 3 10 GLU 10 11 11 GLU GLU A . n C 3 11 GLU 11 12 12 GLU GLU A . n C 3 12 LYS 12 13 13 LYS LYS A . n C 3 13 GLU 13 14 14 GLU GLU A . n C 3 14 VAL 14 15 15 VAL VAL A . n C 3 15 ASP 15 16 16 ASP ASP A . n C 3 16 ILE 16 17 17 ILE ILE A . n C 3 17 SER 17 18 18 SER SER A . n C 3 18 LYS 18 19 19 LYS LYS A . n C 3 19 ILE 19 20 20 ILE ILE A . n C 3 20 LYS 20 21 21 LYS LYS A . n C 3 21 LYS 21 22 22 LYS LYS A . n C 3 22 VAL 22 23 23 VAL VAL A . n C 3 23 TRP 23 24 24 TRP TRP A . n C 3 24 ARG 24 25 25 ARG ARG A . n C 3 25 VAL 25 26 26 VAL VAL A . n C 3 26 GLY 26 27 27 GLY GLY A . n C 3 27 LYS 27 28 28 LYS LYS A . n C 3 28 MET 28 29 29 MET MET A . n C 3 29 ILE 29 30 30 ILE ILE A . n C 3 30 SER 30 31 31 SER SER A . n C 3 31 PHE 31 32 32 PHE PHE A . n C 3 32 THR 32 33 33 THR THR A . n C 3 33 TYR 33 34 34 TYR TYR A . n C 3 34 ASP 34 35 35 ASP ASP A . n C 3 35 GLU 35 36 36 GLU GLU A . n C 3 36 GLY 36 37 37 GLY GLY A . n C 3 37 GLY 37 38 38 GLY GLY A . n C 3 38 GLY 38 39 39 GLY GLY A . n C 3 39 LYS 39 40 40 LYS LYS A . n C 3 40 THR 40 41 41 THR THR A . n C 3 41 GLY 41 42 42 GLY GLY A . n C 3 42 ARG 42 43 43 ARG ARG A . n C 3 43 GLY 43 44 44 GLY GLY A . n C 3 44 ALA 44 45 45 ALA ALA A . n C 3 45 VAL 45 46 46 VAL VAL A . n C 3 46 SER 46 47 47 SER SER A . n C 3 47 GLU 47 48 48 GLU GLU A . n C 3 48 LYS 48 49 49 LYS LYS A . n C 3 49 ASP 49 50 50 ASP ASP A . n C 3 50 ALA 50 51 51 ALA ALA A . n C 3 51 PRO 51 52 52 PRO PRO A . n C 3 52 LYS 52 53 53 LYS LYS A . n C 3 53 GLU 53 54 54 GLU GLU A . n C 3 54 LEU 54 55 55 LEU LEU A . n C 3 55 LEU 55 56 56 LEU LEU A . n C 3 56 GLN 56 57 57 GLN GLN A . n C 3 57 MET 57 58 58 MET MET A . n C 3 58 LEU 58 59 59 LEU LEU A . n C 3 59 GLU 59 60 60 GLU GLU A . n C 3 60 LYS 60 61 61 LYS LYS A . n C 3 61 GLN 61 62 62 GLN GLN A . n C 3 62 LYS 62 63 63 LYS LYS A . n C 3 63 LYS 63 64 64 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 109 2 HOH HOH B . D 4 HOH 2 110 7 HOH HOH B . D 4 HOH 3 111 9 HOH HOH B . D 4 HOH 4 112 10 HOH HOH B . D 4 HOH 5 113 16 HOH HOH B . D 4 HOH 6 114 20 HOH HOH B . D 4 HOH 7 115 31 HOH HOH B . D 4 HOH 8 116 45 HOH HOH B . D 4 HOH 9 117 49 HOH HOH B . D 4 HOH 10 118 69 HOH HOH B . D 4 HOH 11 119 78 HOH HOH B . D 4 HOH 12 120 81 HOH HOH B . D 4 HOH 13 121 88 HOH HOH B . D 4 HOH 14 122 92 HOH HOH B . D 4 HOH 15 123 105 HOH HOH B . D 4 HOH 16 124 114 HOH HOH B . D 4 HOH 17 125 116 HOH HOH B . D 4 HOH 18 126 117 HOH HOH B . D 4 HOH 19 127 118 HOH HOH B . D 4 HOH 20 128 121 HOH HOH B . D 4 HOH 21 129 122 HOH HOH B . D 4 HOH 22 130 123 HOH HOH B . D 4 HOH 23 131 125 HOH HOH B . D 4 HOH 24 132 137 HOH HOH B . D 4 HOH 25 133 139 HOH HOH B . E 4 HOH 1 4 4 HOH HOH C . E 4 HOH 2 8 8 HOH HOH C . E 4 HOH 3 11 11 HOH HOH C . E 4 HOH 4 21 21 HOH HOH C . E 4 HOH 5 23 23 HOH HOH C . E 4 HOH 6 25 25 HOH HOH C . E 4 HOH 7 27 27 HOH HOH C . E 4 HOH 8 33 33 HOH HOH C . E 4 HOH 9 34 34 HOH HOH C . E 4 HOH 10 36 36 HOH HOH C . E 4 HOH 11 41 41 HOH HOH C . E 4 HOH 12 46 46 HOH HOH C . E 4 HOH 13 47 47 HOH HOH C . E 4 HOH 14 48 48 HOH HOH C . E 4 HOH 15 50 50 HOH HOH C . E 4 HOH 16 55 55 HOH HOH C . E 4 HOH 17 60 60 HOH HOH C . E 4 HOH 18 67 67 HOH HOH C . E 4 HOH 19 68 68 HOH HOH C . E 4 HOH 20 71 71 HOH HOH C . E 4 HOH 21 72 72 HOH HOH C . E 4 HOH 22 82 82 HOH HOH C . E 4 HOH 23 83 83 HOH HOH C . E 4 HOH 24 85 85 HOH HOH C . E 4 HOH 25 96 96 HOH HOH C . E 4 HOH 26 99 99 HOH HOH C . E 4 HOH 27 104 104 HOH HOH C . E 4 HOH 28 129 129 HOH HOH C . E 4 HOH 29 130 130 HOH HOH C . E 4 HOH 30 134 134 HOH HOH C . E 4 HOH 31 138 138 HOH HOH C . E 4 HOH 32 158 158 HOH HOH C . F 4 HOH 1 65 3 HOH HOH A . F 4 HOH 2 66 5 HOH HOH A . F 4 HOH 3 67 6 HOH HOH A . F 4 HOH 4 68 12 HOH HOH A . F 4 HOH 5 69 14 HOH HOH A . F 4 HOH 6 70 15 HOH HOH A . F 4 HOH 7 71 17 HOH HOH A . F 4 HOH 8 72 19 HOH HOH A . F 4 HOH 9 73 26 HOH HOH A . F 4 HOH 10 74 29 HOH HOH A . F 4 HOH 11 75 30 HOH HOH A . F 4 HOH 12 76 32 HOH HOH A . F 4 HOH 13 77 35 HOH HOH A . F 4 HOH 14 78 37 HOH HOH A . F 4 HOH 15 79 38 HOH HOH A . F 4 HOH 16 80 40 HOH HOH A . F 4 HOH 17 81 42 HOH HOH A . F 4 HOH 18 82 43 HOH HOH A . F 4 HOH 19 83 51 HOH HOH A . F 4 HOH 20 84 53 HOH HOH A . F 4 HOH 21 85 57 HOH HOH A . F 4 HOH 22 86 58 HOH HOH A . F 4 HOH 23 87 59 HOH HOH A . F 4 HOH 24 88 61 HOH HOH A . F 4 HOH 25 89 62 HOH HOH A . F 4 HOH 26 90 63 HOH HOH A . F 4 HOH 27 91 64 HOH HOH A . F 4 HOH 28 92 65 HOH HOH A . F 4 HOH 29 93 66 HOH HOH A . F 4 HOH 30 94 73 HOH HOH A . F 4 HOH 31 95 75 HOH HOH A . F 4 HOH 32 96 77 HOH HOH A . F 4 HOH 33 97 79 HOH HOH A . F 4 HOH 34 98 84 HOH HOH A . F 4 HOH 35 99 86 HOH HOH A . F 4 HOH 36 100 94 HOH HOH A . F 4 HOH 37 101 95 HOH HOH A . F 4 HOH 38 102 109 HOH HOH A . F 4 HOH 39 103 110 HOH HOH A . F 4 HOH 40 104 113 HOH HOH A . F 4 HOH 41 105 119 HOH HOH A . F 4 HOH 42 106 120 HOH HOH A . F 4 HOH 43 107 124 HOH HOH A . F 4 HOH 44 108 126 HOH HOH A . F 4 HOH 45 109 128 HOH HOH A . F 4 HOH 46 110 132 HOH HOH A . F 4 HOH 47 111 140 HOH HOH A . F 4 HOH 48 112 144 HOH HOH A . F 4 HOH 49 113 146 HOH HOH A . F 4 HOH 50 114 147 HOH HOH A . F 4 HOH 51 115 155 HOH HOH A . F 4 HOH 52 116 157 HOH HOH A . F 4 HOH 53 117 160 HOH HOH A . F 4 HOH 54 118 161 HOH HOH A . F 4 HOH 55 119 162 HOH HOH A . F 4 HOH 56 120 163 HOH HOH A . F 4 HOH 57 121 164 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 X-PLOR refinement 3.840 ? 2 bioteX 'data reduction' 'V. 1.1' ? 3 bioteX 'data scaling' 'V. 1.1' ? 4 # _cell.entry_id 1BF4 _cell.length_a 46.870 _cell.length_b 49.670 _cell.length_c 37.650 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BF4 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 # _exptl.entry_id 1BF4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.8 _exptl_crystal.density_percent_sol 39 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'pH 6.5' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 123 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type RIGAKU _diffrn_detector.pdbx_collection_date 1997-07-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1BF4 _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 6.0 _reflns.d_resolution_high 1.6 _reflns.number_obs 11595 _reflns.number_all ? _reflns.percent_possible_obs 95.1 _reflns.pdbx_Rmerge_I_obs 0.0737000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15 _reflns.B_iso_Wilson_estimate 14.8 _reflns.pdbx_redundancy 4.36 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.6 _reflns_shell.d_res_low 1.65 _reflns_shell.percent_possible_all 86.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.2780000 _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1BF4 _refine.ls_number_reflns_obs 11256 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2 _refine.pdbx_data_cutoff_high_absF 10000000.00 _refine.pdbx_data_cutoff_low_absF 0.001 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6.0 _refine.ls_d_res_high 1.6 _refine.ls_percent_reflns_obs 95.1 _refine.ls_R_factor_obs 0.2110000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2110000 _refine.ls_R_factor_R_free 0.2880000 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.94 _refine.ls_number_reflns_R_free 1115 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 25.0 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model SSO7D-GTAATTAC _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1BF4 _refine_analyze.Luzzati_coordinate_error_obs 0.22 _refine_analyze.Luzzati_sigma_a_obs 0.28 _refine_analyze.Luzzati_d_res_low_obs 6.0 _refine_analyze.Luzzati_coordinate_error_free 0.26 _refine_analyze.Luzzati_sigma_a_free 0.28 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 502 _refine_hist.pdbx_number_atoms_nucleic_acid 322 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 114 _refine_hist.number_atoms_total 938 _refine_hist.d_res_high 1.6 _refine_hist.d_res_low 6.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 24.0 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.60 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 1.92 1.50 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 3.04 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 2.68 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 3.76 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 1.60 _refine_ls_shell.d_res_low 1.67 _refine_ls_shell.number_reflns_R_work 1138 _refine_ls_shell.R_factor_R_work 0.3430000 _refine_ls_shell.percent_reflns_obs 86.7 _refine_ls_shell.R_factor_R_free 0.3770000 _refine_ls_shell.R_factor_R_free_error 0.033 _refine_ls_shell.percent_reflns_R_free 10.3 _refine_ls_shell.number_reflns_R_free 130 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARAM_NDBX_HIGH.DNA TOPH11.WAT 'X-RAY DIFFRACTION' 2 NEW.PAM TOP_NDBX.DNA 'X-RAY DIFFRACTION' 3 PARAM11.WAT NEW.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1BF4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1BF4 _struct.title 'CHROMOSOMAL DNA-BINDING PROTEIN SSO7D/D(GCGAACGC) COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1BF4 _struct_keywords.pdbx_keywords 'DNA-BINDING PROTEIN/DNA' _struct_keywords.text 'DNA BINDING PROTEIN, HYPERTHERMOPHILE, ARCHAEBACTERIA, COMPLEX (DNA-BINDING PROTEIN-DNA), DNA-BINDING PROTEIN-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP DN71_SULAC 3 ? ? P13123 ? 2 PDB 1BF4 1 ? ? 1BF4 ? 3 PDB 1BF4 2 ? ? 1BF4 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1BF4 A 1 ? 63 ? P13123 1 ? 63 ? 2 64 2 2 1BF4 B 1 ? 8 ? 1BF4 101 ? 108 ? 101 108 3 3 1BF4 C 1 ? 8 ? 1BF4 109 ? 116 ? 109 116 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE C 16 ? LYS C 18 ? ILE A 17 LYS A 19 5 ? 3 HELX_P HELX_P2 2 GLY C 36 ? GLY C 38 ? GLY A 37 GLY A 39 5 ? 3 HELX_P HELX_P3 3 LYS C 52 ? LYS C 60 ? LYS A 53 LYS A 61 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 4 "O3'" ? ? ? 1_555 A 5IU 5 P ? ? B DT 104 B 5IU 105 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale2 covale both ? A 5IU 5 "O3'" ? ? ? 1_555 A DC 6 P ? ? B 5IU 105 B DC 106 1_555 ? ? ? ? ? ? ? 1.603 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 8 N3 ? ? B DG 101 C DC 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 8 O2 ? ? B DG 101 C DC 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 8 N4 ? ? B DG 101 C DC 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 7 N1 ? ? B DC 102 C DG 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 7 O6 ? ? B DC 102 C DG 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 7 N2 ? ? B DC 102 C DG 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 6 N3 ? ? B DG 103 C DC 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 6 O2 ? ? B DG 103 C DC 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 6 N4 ? ? B DG 103 C DC 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 5 N1 ? ? B DT 104 C DA 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 5 N6 ? ? B DT 104 C DA 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A 5IU 5 N3 ? ? ? 1_555 B DA 4 N1 ? ? B 5IU 105 C DA 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A 5IU 5 O4 ? ? ? 1_555 B DA 4 N6 ? ? B 5IU 105 C DA 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 3 N1 ? ? B DC 106 C DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 3 O6 ? ? B DC 106 C DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 3 N2 ? ? B DC 106 C DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 2 N3 ? ? B DG 107 C DC 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 2 O2 ? ? B DG 107 C DC 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 2 N4 ? ? B DG 107 C DC 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 1 N1 ? ? B DC 108 C DG 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 1 O6 ? ? B DC 108 C DG 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 1 N2 ? ? B DC 108 C DG 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR C 2 ? TYR C 7 ? THR A 3 TYR A 8 A 2 GLU C 10 ? ASP C 15 ? GLU A 11 ASP A 16 B 1 THR C 40 ? SER C 46 ? THR A 41 SER A 47 B 2 MET C 28 ? ASP C 34 ? MET A 29 ASP A 35 B 3 ILE C 19 ? VAL C 25 ? ILE A 20 VAL A 26 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL C 3 ? O VAL A 4 N VAL C 14 ? N VAL A 15 B 1 2 O GLY C 41 ? O GLY A 42 N TYR C 33 ? N TYR A 34 B 2 3 O MET C 28 ? O MET A 29 N VAL C 25 ? N VAL A 26 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 50 ? ? -64.50 -70.33 2 1 ALA A 51 ? ? 2.21 104.87 3 1 GLN A 62 ? ? -124.32 -80.51 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DC _pdbx_validate_planes.auth_asym_id C _pdbx_validate_planes.auth_seq_id 114 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.075 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id 5IU _pdbx_struct_mod_residue.label_seq_id 5 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id 5IU _pdbx_struct_mod_residue.auth_seq_id 105 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DU _pdbx_struct_mod_residue.details "5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5IU N1 N N N 1 5IU C2 C N N 2 5IU N3 N N N 3 5IU C4 C N N 4 5IU C5 C N N 5 5IU C6 C N N 6 5IU O2 O N N 7 5IU O4 O N N 8 5IU I5 I N N 9 5IU "C1'" C N R 10 5IU "C2'" C N N 11 5IU "C3'" C N S 12 5IU "C4'" C N R 13 5IU "O3'" O N N 14 5IU "O4'" O N N 15 5IU "C5'" C N N 16 5IU "O5'" O N N 17 5IU P P N N 18 5IU OP1 O N N 19 5IU OP2 O N N 20 5IU OP3 O N N 21 5IU HN3 H N N 22 5IU H6 H N N 23 5IU "H1'" H N N 24 5IU "H2'" H N N 25 5IU "H2''" H N N 26 5IU "H3'" H N N 27 5IU "H4'" H N N 28 5IU "HO3'" H N N 29 5IU "H5'" H N N 30 5IU "H5''" H N N 31 5IU HOP2 H N N 32 5IU HOP3 H N N 33 ALA N N N N 34 ALA CA C N S 35 ALA C C N N 36 ALA O O N N 37 ALA CB C N N 38 ALA OXT O N N 39 ALA H H N N 40 ALA H2 H N N 41 ALA HA H N N 42 ALA HB1 H N N 43 ALA HB2 H N N 44 ALA HB3 H N N 45 ALA HXT H N N 46 ARG N N N N 47 ARG CA C N S 48 ARG C C N N 49 ARG O O N N 50 ARG CB C N N 51 ARG CG C N N 52 ARG CD C N N 53 ARG NE N N N 54 ARG CZ C N N 55 ARG NH1 N N N 56 ARG NH2 N N N 57 ARG OXT O N N 58 ARG H H N N 59 ARG H2 H N N 60 ARG HA H N N 61 ARG HB2 H N N 62 ARG HB3 H N N 63 ARG HG2 H N N 64 ARG HG3 H N N 65 ARG HD2 H N N 66 ARG HD3 H N N 67 ARG HE H N N 68 ARG HH11 H N N 69 ARG HH12 H N N 70 ARG HH21 H N N 71 ARG HH22 H N N 72 ARG HXT H N N 73 ASP N N N N 74 ASP CA C N S 75 ASP C C N N 76 ASP O O N N 77 ASP CB C N N 78 ASP CG C N N 79 ASP OD1 O N N 80 ASP OD2 O N N 81 ASP OXT O N N 82 ASP H H N N 83 ASP H2 H N N 84 ASP HA H N N 85 ASP HB2 H N N 86 ASP HB3 H N N 87 ASP HD2 H N N 88 ASP HXT H N N 89 DA OP3 O N N 90 DA P P N N 91 DA OP1 O N N 92 DA OP2 O N N 93 DA "O5'" O N N 94 DA "C5'" C N N 95 DA "C4'" C N R 96 DA "O4'" O N N 97 DA "C3'" C N S 98 DA "O3'" O N N 99 DA "C2'" C N N 100 DA "C1'" C N R 101 DA N9 N Y N 102 DA C8 C Y N 103 DA N7 N Y N 104 DA C5 C Y N 105 DA C6 C Y N 106 DA N6 N N N 107 DA N1 N Y N 108 DA C2 C Y N 109 DA N3 N Y N 110 DA C4 C Y N 111 DA HOP3 H N N 112 DA HOP2 H N N 113 DA "H5'" H N N 114 DA "H5''" H N N 115 DA "H4'" H N N 116 DA "H3'" H N N 117 DA "HO3'" H N N 118 DA "H2'" H N N 119 DA "H2''" H N N 120 DA "H1'" H N N 121 DA H8 H N N 122 DA H61 H N N 123 DA H62 H N N 124 DA H2 H N N 125 DC OP3 O N N 126 DC P P N N 127 DC OP1 O N N 128 DC OP2 O N N 129 DC "O5'" O N N 130 DC "C5'" C N N 131 DC "C4'" C N R 132 DC "O4'" O N N 133 DC "C3'" C N S 134 DC "O3'" O N N 135 DC "C2'" C N N 136 DC "C1'" C N R 137 DC N1 N N N 138 DC C2 C N N 139 DC O2 O N N 140 DC N3 N N N 141 DC C4 C N N 142 DC N4 N N N 143 DC C5 C N N 144 DC C6 C N N 145 DC HOP3 H N N 146 DC HOP2 H N N 147 DC "H5'" H N N 148 DC "H5''" H N N 149 DC "H4'" H N N 150 DC "H3'" H N N 151 DC "HO3'" H N N 152 DC "H2'" H N N 153 DC "H2''" H N N 154 DC "H1'" H N N 155 DC H41 H N N 156 DC H42 H N N 157 DC H5 H N N 158 DC H6 H N N 159 DG OP3 O N N 160 DG P P N N 161 DG OP1 O N N 162 DG OP2 O N N 163 DG "O5'" O N N 164 DG "C5'" C N N 165 DG "C4'" C N R 166 DG "O4'" O N N 167 DG "C3'" C N S 168 DG "O3'" O N N 169 DG "C2'" C N N 170 DG "C1'" C N R 171 DG N9 N Y N 172 DG C8 C Y N 173 DG N7 N Y N 174 DG C5 C Y N 175 DG C6 C N N 176 DG O6 O N N 177 DG N1 N N N 178 DG C2 C N N 179 DG N2 N N N 180 DG N3 N N N 181 DG C4 C Y N 182 DG HOP3 H N N 183 DG HOP2 H N N 184 DG "H5'" H N N 185 DG "H5''" H N N 186 DG "H4'" H N N 187 DG "H3'" H N N 188 DG "HO3'" H N N 189 DG "H2'" H N N 190 DG "H2''" H N N 191 DG "H1'" H N N 192 DG H8 H N N 193 DG H1 H N N 194 DG H21 H N N 195 DG H22 H N N 196 DT OP3 O N N 197 DT P P N N 198 DT OP1 O N N 199 DT OP2 O N N 200 DT "O5'" O N N 201 DT "C5'" C N N 202 DT "C4'" C N R 203 DT "O4'" O N N 204 DT "C3'" C N S 205 DT "O3'" O N N 206 DT "C2'" C N N 207 DT "C1'" C N R 208 DT N1 N N N 209 DT C2 C N N 210 DT O2 O N N 211 DT N3 N N N 212 DT C4 C N N 213 DT O4 O N N 214 DT C5 C N N 215 DT C7 C N N 216 DT C6 C N N 217 DT HOP3 H N N 218 DT HOP2 H N N 219 DT "H5'" H N N 220 DT "H5''" H N N 221 DT "H4'" H N N 222 DT "H3'" H N N 223 DT "HO3'" H N N 224 DT "H2'" H N N 225 DT "H2''" H N N 226 DT "H1'" H N N 227 DT H3 H N N 228 DT H71 H N N 229 DT H72 H N N 230 DT H73 H N N 231 DT H6 H N N 232 GLN N N N N 233 GLN CA C N S 234 GLN C C N N 235 GLN O O N N 236 GLN CB C N N 237 GLN CG C N N 238 GLN CD C N N 239 GLN OE1 O N N 240 GLN NE2 N N N 241 GLN OXT O N N 242 GLN H H N N 243 GLN H2 H N N 244 GLN HA H N N 245 GLN HB2 H N N 246 GLN HB3 H N N 247 GLN HG2 H N N 248 GLN HG3 H N N 249 GLN HE21 H N N 250 GLN HE22 H N N 251 GLN HXT H N N 252 GLU N N N N 253 GLU CA C N S 254 GLU C C N N 255 GLU O O N N 256 GLU CB C N N 257 GLU CG C N N 258 GLU CD C N N 259 GLU OE1 O N N 260 GLU OE2 O N N 261 GLU OXT O N N 262 GLU H H N N 263 GLU H2 H N N 264 GLU HA H N N 265 GLU HB2 H N N 266 GLU HB3 H N N 267 GLU HG2 H N N 268 GLU HG3 H N N 269 GLU HE2 H N N 270 GLU HXT H N N 271 GLY N N N N 272 GLY CA C N N 273 GLY C C N N 274 GLY O O N N 275 GLY OXT O N N 276 GLY H H N N 277 GLY H2 H N N 278 GLY HA2 H N N 279 GLY HA3 H N N 280 GLY HXT H N N 281 HOH O O N N 282 HOH H1 H N N 283 HOH H2 H N N 284 ILE N N N N 285 ILE CA C N S 286 ILE C C N N 287 ILE O O N N 288 ILE CB C N S 289 ILE CG1 C N N 290 ILE CG2 C N N 291 ILE CD1 C N N 292 ILE OXT O N N 293 ILE H H N N 294 ILE H2 H N N 295 ILE HA H N N 296 ILE HB H N N 297 ILE HG12 H N N 298 ILE HG13 H N N 299 ILE HG21 H N N 300 ILE HG22 H N N 301 ILE HG23 H N N 302 ILE HD11 H N N 303 ILE HD12 H N N 304 ILE HD13 H N N 305 ILE HXT H N N 306 LEU N N N N 307 LEU CA C N S 308 LEU C C N N 309 LEU O O N N 310 LEU CB C N N 311 LEU CG C N N 312 LEU CD1 C N N 313 LEU CD2 C N N 314 LEU OXT O N N 315 LEU H H N N 316 LEU H2 H N N 317 LEU HA H N N 318 LEU HB2 H N N 319 LEU HB3 H N N 320 LEU HG H N N 321 LEU HD11 H N N 322 LEU HD12 H N N 323 LEU HD13 H N N 324 LEU HD21 H N N 325 LEU HD22 H N N 326 LEU HD23 H N N 327 LEU HXT H N N 328 LYS N N N N 329 LYS CA C N S 330 LYS C C N N 331 LYS O O N N 332 LYS CB C N N 333 LYS CG C N N 334 LYS CD C N N 335 LYS CE C N N 336 LYS NZ N N N 337 LYS OXT O N N 338 LYS H H N N 339 LYS H2 H N N 340 LYS HA H N N 341 LYS HB2 H N N 342 LYS HB3 H N N 343 LYS HG2 H N N 344 LYS HG3 H N N 345 LYS HD2 H N N 346 LYS HD3 H N N 347 LYS HE2 H N N 348 LYS HE3 H N N 349 LYS HZ1 H N N 350 LYS HZ2 H N N 351 LYS HZ3 H N N 352 LYS HXT H N N 353 MET N N N N 354 MET CA C N S 355 MET C C N N 356 MET O O N N 357 MET CB C N N 358 MET CG C N N 359 MET SD S N N 360 MET CE C N N 361 MET OXT O N N 362 MET H H N N 363 MET H2 H N N 364 MET HA H N N 365 MET HB2 H N N 366 MET HB3 H N N 367 MET HG2 H N N 368 MET HG3 H N N 369 MET HE1 H N N 370 MET HE2 H N N 371 MET HE3 H N N 372 MET HXT H N N 373 PHE N N N N 374 PHE CA C N S 375 PHE C C N N 376 PHE O O N N 377 PHE CB C N N 378 PHE CG C Y N 379 PHE CD1 C Y N 380 PHE CD2 C Y N 381 PHE CE1 C Y N 382 PHE CE2 C Y N 383 PHE CZ C Y N 384 PHE OXT O N N 385 PHE H H N N 386 PHE H2 H N N 387 PHE HA H N N 388 PHE HB2 H N N 389 PHE HB3 H N N 390 PHE HD1 H N N 391 PHE HD2 H N N 392 PHE HE1 H N N 393 PHE HE2 H N N 394 PHE HZ H N N 395 PHE HXT H N N 396 PRO N N N N 397 PRO CA C N S 398 PRO C C N N 399 PRO O O N N 400 PRO CB C N N 401 PRO CG C N N 402 PRO CD C N N 403 PRO OXT O N N 404 PRO H H N N 405 PRO HA H N N 406 PRO HB2 H N N 407 PRO HB3 H N N 408 PRO HG2 H N N 409 PRO HG3 H N N 410 PRO HD2 H N N 411 PRO HD3 H N N 412 PRO HXT H N N 413 SER N N N N 414 SER CA C N S 415 SER C C N N 416 SER O O N N 417 SER CB C N N 418 SER OG O N N 419 SER OXT O N N 420 SER H H N N 421 SER H2 H N N 422 SER HA H N N 423 SER HB2 H N N 424 SER HB3 H N N 425 SER HG H N N 426 SER HXT H N N 427 THR N N N N 428 THR CA C N S 429 THR C C N N 430 THR O O N N 431 THR CB C N R 432 THR OG1 O N N 433 THR CG2 C N N 434 THR OXT O N N 435 THR H H N N 436 THR H2 H N N 437 THR HA H N N 438 THR HB H N N 439 THR HG1 H N N 440 THR HG21 H N N 441 THR HG22 H N N 442 THR HG23 H N N 443 THR HXT H N N 444 TRP N N N N 445 TRP CA C N S 446 TRP C C N N 447 TRP O O N N 448 TRP CB C N N 449 TRP CG C Y N 450 TRP CD1 C Y N 451 TRP CD2 C Y N 452 TRP NE1 N Y N 453 TRP CE2 C Y N 454 TRP CE3 C Y N 455 TRP CZ2 C Y N 456 TRP CZ3 C Y N 457 TRP CH2 C Y N 458 TRP OXT O N N 459 TRP H H N N 460 TRP H2 H N N 461 TRP HA H N N 462 TRP HB2 H N N 463 TRP HB3 H N N 464 TRP HD1 H N N 465 TRP HE1 H N N 466 TRP HE3 H N N 467 TRP HZ2 H N N 468 TRP HZ3 H N N 469 TRP HH2 H N N 470 TRP HXT H N N 471 TYR N N N N 472 TYR CA C N S 473 TYR C C N N 474 TYR O O N N 475 TYR CB C N N 476 TYR CG C Y N 477 TYR CD1 C Y N 478 TYR CD2 C Y N 479 TYR CE1 C Y N 480 TYR CE2 C Y N 481 TYR CZ C Y N 482 TYR OH O N N 483 TYR OXT O N N 484 TYR H H N N 485 TYR H2 H N N 486 TYR HA H N N 487 TYR HB2 H N N 488 TYR HB3 H N N 489 TYR HD1 H N N 490 TYR HD2 H N N 491 TYR HE1 H N N 492 TYR HE2 H N N 493 TYR HH H N N 494 TYR HXT H N N 495 VAL N N N N 496 VAL CA C N S 497 VAL C C N N 498 VAL O O N N 499 VAL CB C N N 500 VAL CG1 C N N 501 VAL CG2 C N N 502 VAL OXT O N N 503 VAL H H N N 504 VAL H2 H N N 505 VAL HA H N N 506 VAL HB H N N 507 VAL HG11 H N N 508 VAL HG12 H N N 509 VAL HG13 H N N 510 VAL HG21 H N N 511 VAL HG22 H N N 512 VAL HG23 H N N 513 VAL HXT H N N 514 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5IU N1 C2 sing N N 1 5IU N1 C6 sing N N 2 5IU N1 "C1'" sing N N 3 5IU C2 N3 sing N N 4 5IU C2 O2 doub N N 5 5IU N3 C4 sing N N 6 5IU N3 HN3 sing N N 7 5IU C4 C5 sing N N 8 5IU C4 O4 doub N N 9 5IU C5 C6 doub N N 10 5IU C5 I5 sing N N 11 5IU C6 H6 sing N N 12 5IU "C1'" "C2'" sing N N 13 5IU "C1'" "O4'" sing N N 14 5IU "C1'" "H1'" sing N N 15 5IU "C2'" "C3'" sing N N 16 5IU "C2'" "H2'" sing N N 17 5IU "C2'" "H2''" sing N N 18 5IU "C3'" "C4'" sing N N 19 5IU "C3'" "O3'" sing N N 20 5IU "C3'" "H3'" sing N N 21 5IU "C4'" "O4'" sing N N 22 5IU "C4'" "C5'" sing N N 23 5IU "C4'" "H4'" sing N N 24 5IU "O3'" "HO3'" sing N N 25 5IU "C5'" "O5'" sing N N 26 5IU "C5'" "H5'" sing N N 27 5IU "C5'" "H5''" sing N N 28 5IU "O5'" P sing N N 29 5IU P OP1 doub N N 30 5IU P OP2 sing N N 31 5IU P OP3 sing N N 32 5IU OP2 HOP2 sing N N 33 5IU OP3 HOP3 sing N N 34 ALA N CA sing N N 35 ALA N H sing N N 36 ALA N H2 sing N N 37 ALA CA C sing N N 38 ALA CA CB sing N N 39 ALA CA HA sing N N 40 ALA C O doub N N 41 ALA C OXT sing N N 42 ALA CB HB1 sing N N 43 ALA CB HB2 sing N N 44 ALA CB HB3 sing N N 45 ALA OXT HXT sing N N 46 ARG N CA sing N N 47 ARG N H sing N N 48 ARG N H2 sing N N 49 ARG CA C sing N N 50 ARG CA CB sing N N 51 ARG CA HA sing N N 52 ARG C O doub N N 53 ARG C OXT sing N N 54 ARG CB CG sing N N 55 ARG CB HB2 sing N N 56 ARG CB HB3 sing N N 57 ARG CG CD sing N N 58 ARG CG HG2 sing N N 59 ARG CG HG3 sing N N 60 ARG CD NE sing N N 61 ARG CD HD2 sing N N 62 ARG CD HD3 sing N N 63 ARG NE CZ sing N N 64 ARG NE HE sing N N 65 ARG CZ NH1 sing N N 66 ARG CZ NH2 doub N N 67 ARG NH1 HH11 sing N N 68 ARG NH1 HH12 sing N N 69 ARG NH2 HH21 sing N N 70 ARG NH2 HH22 sing N N 71 ARG OXT HXT sing N N 72 ASP N CA sing N N 73 ASP N H sing N N 74 ASP N H2 sing N N 75 ASP CA C sing N N 76 ASP CA CB sing N N 77 ASP CA HA sing N N 78 ASP C O doub N N 79 ASP C OXT sing N N 80 ASP CB CG sing N N 81 ASP CB HB2 sing N N 82 ASP CB HB3 sing N N 83 ASP CG OD1 doub N N 84 ASP CG OD2 sing N N 85 ASP OD2 HD2 sing N N 86 ASP OXT HXT sing N N 87 DA OP3 P sing N N 88 DA OP3 HOP3 sing N N 89 DA P OP1 doub N N 90 DA P OP2 sing N N 91 DA P "O5'" sing N N 92 DA OP2 HOP2 sing N N 93 DA "O5'" "C5'" sing N N 94 DA "C5'" "C4'" sing N N 95 DA "C5'" "H5'" sing N N 96 DA "C5'" "H5''" sing N N 97 DA "C4'" "O4'" sing N N 98 DA "C4'" "C3'" sing N N 99 DA "C4'" "H4'" sing N N 100 DA "O4'" "C1'" sing N N 101 DA "C3'" "O3'" sing N N 102 DA "C3'" "C2'" sing N N 103 DA "C3'" "H3'" sing N N 104 DA "O3'" "HO3'" sing N N 105 DA "C2'" "C1'" sing N N 106 DA "C2'" "H2'" sing N N 107 DA "C2'" "H2''" sing N N 108 DA "C1'" N9 sing N N 109 DA "C1'" "H1'" sing N N 110 DA N9 C8 sing Y N 111 DA N9 C4 sing Y N 112 DA C8 N7 doub Y N 113 DA C8 H8 sing N N 114 DA N7 C5 sing Y N 115 DA C5 C6 sing Y N 116 DA C5 C4 doub Y N 117 DA C6 N6 sing N N 118 DA C6 N1 doub Y N 119 DA N6 H61 sing N N 120 DA N6 H62 sing N N 121 DA N1 C2 sing Y N 122 DA C2 N3 doub Y N 123 DA C2 H2 sing N N 124 DA N3 C4 sing Y N 125 DC OP3 P sing N N 126 DC OP3 HOP3 sing N N 127 DC P OP1 doub N N 128 DC P OP2 sing N N 129 DC P "O5'" sing N N 130 DC OP2 HOP2 sing N N 131 DC "O5'" "C5'" sing N N 132 DC "C5'" "C4'" sing N N 133 DC "C5'" "H5'" sing N N 134 DC "C5'" "H5''" sing N N 135 DC "C4'" "O4'" sing N N 136 DC "C4'" "C3'" sing N N 137 DC "C4'" "H4'" sing N N 138 DC "O4'" "C1'" sing N N 139 DC "C3'" "O3'" sing N N 140 DC "C3'" "C2'" sing N N 141 DC "C3'" "H3'" sing N N 142 DC "O3'" "HO3'" sing N N 143 DC "C2'" "C1'" sing N N 144 DC "C2'" "H2'" sing N N 145 DC "C2'" "H2''" sing N N 146 DC "C1'" N1 sing N N 147 DC "C1'" "H1'" sing N N 148 DC N1 C2 sing N N 149 DC N1 C6 sing N N 150 DC C2 O2 doub N N 151 DC C2 N3 sing N N 152 DC N3 C4 doub N N 153 DC C4 N4 sing N N 154 DC C4 C5 sing N N 155 DC N4 H41 sing N N 156 DC N4 H42 sing N N 157 DC C5 C6 doub N N 158 DC C5 H5 sing N N 159 DC C6 H6 sing N N 160 DG OP3 P sing N N 161 DG OP3 HOP3 sing N N 162 DG P OP1 doub N N 163 DG P OP2 sing N N 164 DG P "O5'" sing N N 165 DG OP2 HOP2 sing N N 166 DG "O5'" "C5'" sing N N 167 DG "C5'" "C4'" sing N N 168 DG "C5'" "H5'" sing N N 169 DG "C5'" "H5''" sing N N 170 DG "C4'" "O4'" sing N N 171 DG "C4'" "C3'" sing N N 172 DG "C4'" "H4'" sing N N 173 DG "O4'" "C1'" sing N N 174 DG "C3'" "O3'" sing N N 175 DG "C3'" "C2'" sing N N 176 DG "C3'" "H3'" sing N N 177 DG "O3'" "HO3'" sing N N 178 DG "C2'" "C1'" sing N N 179 DG "C2'" "H2'" sing N N 180 DG "C2'" "H2''" sing N N 181 DG "C1'" N9 sing N N 182 DG "C1'" "H1'" sing N N 183 DG N9 C8 sing Y N 184 DG N9 C4 sing Y N 185 DG C8 N7 doub Y N 186 DG C8 H8 sing N N 187 DG N7 C5 sing Y N 188 DG C5 C6 sing N N 189 DG C5 C4 doub Y N 190 DG C6 O6 doub N N 191 DG C6 N1 sing N N 192 DG N1 C2 sing N N 193 DG N1 H1 sing N N 194 DG C2 N2 sing N N 195 DG C2 N3 doub N N 196 DG N2 H21 sing N N 197 DG N2 H22 sing N N 198 DG N3 C4 sing N N 199 DT OP3 P sing N N 200 DT OP3 HOP3 sing N N 201 DT P OP1 doub N N 202 DT P OP2 sing N N 203 DT P "O5'" sing N N 204 DT OP2 HOP2 sing N N 205 DT "O5'" "C5'" sing N N 206 DT "C5'" "C4'" sing N N 207 DT "C5'" "H5'" sing N N 208 DT "C5'" "H5''" sing N N 209 DT "C4'" "O4'" sing N N 210 DT "C4'" "C3'" sing N N 211 DT "C4'" "H4'" sing N N 212 DT "O4'" "C1'" sing N N 213 DT "C3'" "O3'" sing N N 214 DT "C3'" "C2'" sing N N 215 DT "C3'" "H3'" sing N N 216 DT "O3'" "HO3'" sing N N 217 DT "C2'" "C1'" sing N N 218 DT "C2'" "H2'" sing N N 219 DT "C2'" "H2''" sing N N 220 DT "C1'" N1 sing N N 221 DT "C1'" "H1'" sing N N 222 DT N1 C2 sing N N 223 DT N1 C6 sing N N 224 DT C2 O2 doub N N 225 DT C2 N3 sing N N 226 DT N3 C4 sing N N 227 DT N3 H3 sing N N 228 DT C4 O4 doub N N 229 DT C4 C5 sing N N 230 DT C5 C7 sing N N 231 DT C5 C6 doub N N 232 DT C7 H71 sing N N 233 DT C7 H72 sing N N 234 DT C7 H73 sing N N 235 DT C6 H6 sing N N 236 GLN N CA sing N N 237 GLN N H sing N N 238 GLN N H2 sing N N 239 GLN CA C sing N N 240 GLN CA CB sing N N 241 GLN CA HA sing N N 242 GLN C O doub N N 243 GLN C OXT sing N N 244 GLN CB CG sing N N 245 GLN CB HB2 sing N N 246 GLN CB HB3 sing N N 247 GLN CG CD sing N N 248 GLN CG HG2 sing N N 249 GLN CG HG3 sing N N 250 GLN CD OE1 doub N N 251 GLN CD NE2 sing N N 252 GLN NE2 HE21 sing N N 253 GLN NE2 HE22 sing N N 254 GLN OXT HXT sing N N 255 GLU N CA sing N N 256 GLU N H sing N N 257 GLU N H2 sing N N 258 GLU CA C sing N N 259 GLU CA CB sing N N 260 GLU CA HA sing N N 261 GLU C O doub N N 262 GLU C OXT sing N N 263 GLU CB CG sing N N 264 GLU CB HB2 sing N N 265 GLU CB HB3 sing N N 266 GLU CG CD sing N N 267 GLU CG HG2 sing N N 268 GLU CG HG3 sing N N 269 GLU CD OE1 doub N N 270 GLU CD OE2 sing N N 271 GLU OE2 HE2 sing N N 272 GLU OXT HXT sing N N 273 GLY N CA sing N N 274 GLY N H sing N N 275 GLY N H2 sing N N 276 GLY CA C sing N N 277 GLY CA HA2 sing N N 278 GLY CA HA3 sing N N 279 GLY C O doub N N 280 GLY C OXT sing N N 281 GLY OXT HXT sing N N 282 HOH O H1 sing N N 283 HOH O H2 sing N N 284 ILE N CA sing N N 285 ILE N H sing N N 286 ILE N H2 sing N N 287 ILE CA C sing N N 288 ILE CA CB sing N N 289 ILE CA HA sing N N 290 ILE C O doub N N 291 ILE C OXT sing N N 292 ILE CB CG1 sing N N 293 ILE CB CG2 sing N N 294 ILE CB HB sing N N 295 ILE CG1 CD1 sing N N 296 ILE CG1 HG12 sing N N 297 ILE CG1 HG13 sing N N 298 ILE CG2 HG21 sing N N 299 ILE CG2 HG22 sing N N 300 ILE CG2 HG23 sing N N 301 ILE CD1 HD11 sing N N 302 ILE CD1 HD12 sing N N 303 ILE CD1 HD13 sing N N 304 ILE OXT HXT sing N N 305 LEU N CA sing N N 306 LEU N H sing N N 307 LEU N H2 sing N N 308 LEU CA C sing N N 309 LEU CA CB sing N N 310 LEU CA HA sing N N 311 LEU C O doub N N 312 LEU C OXT sing N N 313 LEU CB CG sing N N 314 LEU CB HB2 sing N N 315 LEU CB HB3 sing N N 316 LEU CG CD1 sing N N 317 LEU CG CD2 sing N N 318 LEU CG HG sing N N 319 LEU CD1 HD11 sing N N 320 LEU CD1 HD12 sing N N 321 LEU CD1 HD13 sing N N 322 LEU CD2 HD21 sing N N 323 LEU CD2 HD22 sing N N 324 LEU CD2 HD23 sing N N 325 LEU OXT HXT sing N N 326 LYS N CA sing N N 327 LYS N H sing N N 328 LYS N H2 sing N N 329 LYS CA C sing N N 330 LYS CA CB sing N N 331 LYS CA HA sing N N 332 LYS C O doub N N 333 LYS C OXT sing N N 334 LYS CB CG sing N N 335 LYS CB HB2 sing N N 336 LYS CB HB3 sing N N 337 LYS CG CD sing N N 338 LYS CG HG2 sing N N 339 LYS CG HG3 sing N N 340 LYS CD CE sing N N 341 LYS CD HD2 sing N N 342 LYS CD HD3 sing N N 343 LYS CE NZ sing N N 344 LYS CE HE2 sing N N 345 LYS CE HE3 sing N N 346 LYS NZ HZ1 sing N N 347 LYS NZ HZ2 sing N N 348 LYS NZ HZ3 sing N N 349 LYS OXT HXT sing N N 350 MET N CA sing N N 351 MET N H sing N N 352 MET N H2 sing N N 353 MET CA C sing N N 354 MET CA CB sing N N 355 MET CA HA sing N N 356 MET C O doub N N 357 MET C OXT sing N N 358 MET CB CG sing N N 359 MET CB HB2 sing N N 360 MET CB HB3 sing N N 361 MET CG SD sing N N 362 MET CG HG2 sing N N 363 MET CG HG3 sing N N 364 MET SD CE sing N N 365 MET CE HE1 sing N N 366 MET CE HE2 sing N N 367 MET CE HE3 sing N N 368 MET OXT HXT sing N N 369 PHE N CA sing N N 370 PHE N H sing N N 371 PHE N H2 sing N N 372 PHE CA C sing N N 373 PHE CA CB sing N N 374 PHE CA HA sing N N 375 PHE C O doub N N 376 PHE C OXT sing N N 377 PHE CB CG sing N N 378 PHE CB HB2 sing N N 379 PHE CB HB3 sing N N 380 PHE CG CD1 doub Y N 381 PHE CG CD2 sing Y N 382 PHE CD1 CE1 sing Y N 383 PHE CD1 HD1 sing N N 384 PHE CD2 CE2 doub Y N 385 PHE CD2 HD2 sing N N 386 PHE CE1 CZ doub Y N 387 PHE CE1 HE1 sing N N 388 PHE CE2 CZ sing Y N 389 PHE CE2 HE2 sing N N 390 PHE CZ HZ sing N N 391 PHE OXT HXT sing N N 392 PRO N CA sing N N 393 PRO N CD sing N N 394 PRO N H sing N N 395 PRO CA C sing N N 396 PRO CA CB sing N N 397 PRO CA HA sing N N 398 PRO C O doub N N 399 PRO C OXT sing N N 400 PRO CB CG sing N N 401 PRO CB HB2 sing N N 402 PRO CB HB3 sing N N 403 PRO CG CD sing N N 404 PRO CG HG2 sing N N 405 PRO CG HG3 sing N N 406 PRO CD HD2 sing N N 407 PRO CD HD3 sing N N 408 PRO OXT HXT sing N N 409 SER N CA sing N N 410 SER N H sing N N 411 SER N H2 sing N N 412 SER CA C sing N N 413 SER CA CB sing N N 414 SER CA HA sing N N 415 SER C O doub N N 416 SER C OXT sing N N 417 SER CB OG sing N N 418 SER CB HB2 sing N N 419 SER CB HB3 sing N N 420 SER OG HG sing N N 421 SER OXT HXT sing N N 422 THR N CA sing N N 423 THR N H sing N N 424 THR N H2 sing N N 425 THR CA C sing N N 426 THR CA CB sing N N 427 THR CA HA sing N N 428 THR C O doub N N 429 THR C OXT sing N N 430 THR CB OG1 sing N N 431 THR CB CG2 sing N N 432 THR CB HB sing N N 433 THR OG1 HG1 sing N N 434 THR CG2 HG21 sing N N 435 THR CG2 HG22 sing N N 436 THR CG2 HG23 sing N N 437 THR OXT HXT sing N N 438 TRP N CA sing N N 439 TRP N H sing N N 440 TRP N H2 sing N N 441 TRP CA C sing N N 442 TRP CA CB sing N N 443 TRP CA HA sing N N 444 TRP C O doub N N 445 TRP C OXT sing N N 446 TRP CB CG sing N N 447 TRP CB HB2 sing N N 448 TRP CB HB3 sing N N 449 TRP CG CD1 doub Y N 450 TRP CG CD2 sing Y N 451 TRP CD1 NE1 sing Y N 452 TRP CD1 HD1 sing N N 453 TRP CD2 CE2 doub Y N 454 TRP CD2 CE3 sing Y N 455 TRP NE1 CE2 sing Y N 456 TRP NE1 HE1 sing N N 457 TRP CE2 CZ2 sing Y N 458 TRP CE3 CZ3 doub Y N 459 TRP CE3 HE3 sing N N 460 TRP CZ2 CH2 doub Y N 461 TRP CZ2 HZ2 sing N N 462 TRP CZ3 CH2 sing Y N 463 TRP CZ3 HZ3 sing N N 464 TRP CH2 HH2 sing N N 465 TRP OXT HXT sing N N 466 TYR N CA sing N N 467 TYR N H sing N N 468 TYR N H2 sing N N 469 TYR CA C sing N N 470 TYR CA CB sing N N 471 TYR CA HA sing N N 472 TYR C O doub N N 473 TYR C OXT sing N N 474 TYR CB CG sing N N 475 TYR CB HB2 sing N N 476 TYR CB HB3 sing N N 477 TYR CG CD1 doub Y N 478 TYR CG CD2 sing Y N 479 TYR CD1 CE1 sing Y N 480 TYR CD1 HD1 sing N N 481 TYR CD2 CE2 doub Y N 482 TYR CD2 HD2 sing N N 483 TYR CE1 CZ doub Y N 484 TYR CE1 HE1 sing N N 485 TYR CE2 CZ sing Y N 486 TYR CE2 HE2 sing N N 487 TYR CZ OH sing N N 488 TYR OH HH sing N N 489 TYR OXT HXT sing N N 490 VAL N CA sing N N 491 VAL N H sing N N 492 VAL N H2 sing N N 493 VAL CA C sing N N 494 VAL CA CB sing N N 495 VAL CA HA sing N N 496 VAL C O doub N N 497 VAL C OXT sing N N 498 VAL CB CG1 sing N N 499 VAL CB CG2 sing N N 500 VAL CB HB sing N N 501 VAL CG1 HG11 sing N N 502 VAL CG1 HG12 sing N N 503 VAL CG1 HG13 sing N N 504 VAL CG2 HG21 sing N N 505 VAL CG2 HG22 sing N N 506 VAL CG2 HG23 sing N N 507 VAL OXT HXT sing N N 508 # _ndb_struct_conf_na.entry_id 1BF4 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 8 1_555 -0.697 0.060 -0.003 6.719 1.226 6.030 1 B_DG101:DC116_C B 101 ? C 116 ? 19 1 1 A DC 2 1_555 B DG 7 1_555 0.329 -0.130 -0.088 15.094 -9.825 0.824 2 B_DC102:DG115_C B 102 ? C 115 ? 19 1 1 A DG 3 1_555 B DC 6 1_555 -0.305 -0.039 -0.174 -23.637 -1.978 -0.125 3 B_DG103:DC114_C B 103 ? C 114 ? 19 1 1 A DT 4 1_555 B DA 5 1_555 -0.028 -0.074 0.201 -3.639 -5.081 3.531 4 B_DT104:DA113_C B 104 ? C 113 ? 20 1 1 A 5IU 5 1_555 B DA 4 1_555 -0.472 -0.355 -0.143 1.141 -15.417 -0.757 5 B_5IU105:DA112_C B 105 ? C 112 ? 20 1 1 A DC 6 1_555 B DG 3 1_555 0.368 -0.183 -0.101 6.149 -13.441 -0.202 6 B_DC106:DG111_C B 106 ? C 111 ? 19 1 1 A DG 7 1_555 B DC 2 1_555 -0.337 -0.237 -0.078 -0.519 -2.836 -0.741 7 B_DG107:DC110_C B 107 ? C 110 ? 19 1 1 A DC 8 1_555 B DG 1 1_555 0.256 -0.183 -0.284 6.822 -4.205 0.160 8 B_DC108:DG109_C B 108 ? C 109 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 8 1_555 A DC 2 1_555 B DG 7 1_555 -0.946 -0.424 3.070 -1.006 -0.584 31.165 -0.683 1.578 3.105 -1.086 1.872 31.186 1 BB_DG101DC102:DG115DC116_CC B 101 ? C 116 ? B 102 ? C 115 ? 1 A DC 2 1_555 B DG 7 1_555 A DG 3 1_555 B DC 6 1_555 0.179 1.233 5.442 -1.053 56.091 22.421 -4.528 -0.287 3.246 69.942 1.313 60.076 2 BB_DC102DG103:DC114DG115_CC B 102 ? C 115 ? B 103 ? C 114 ? 1 A DG 3 1_555 B DC 6 1_555 A DT 4 1_555 B DA 5 1_555 0.146 0.009 2.961 -5.497 9.666 21.471 -2.763 -1.933 2.607 23.984 13.639 24.150 3 BB_DG103DT104:DA113DC114_CC B 103 ? C 114 ? B 104 ? C 113 ? 1 A DT 4 1_555 B DA 5 1_555 A 5IU 5 1_555 B DA 4 1_555 -0.346 -0.592 3.124 3.018 -0.290 27.277 -1.181 1.435 3.075 -0.612 -6.374 27.442 4 BB_DT1045IU105:DA112DA113_CC B 104 ? C 113 ? B 105 ? C 112 ? 1 A 5IU 5 1_555 B DA 4 1_555 A DC 6 1_555 B DG 3 1_555 -0.042 0.250 3.263 2.416 6.919 36.029 -0.552 0.398 3.245 11.046 -3.857 36.742 5 BB_5IU105DC106:DG111DA112_CC B 105 ? C 112 ? B 106 ? C 111 ? 1 A DC 6 1_555 B DG 3 1_555 A DG 7 1_555 B DC 2 1_555 1.190 0.775 3.453 2.317 4.206 33.520 0.597 -1.639 3.592 7.247 -3.992 33.853 6 BB_DC106DG107:DC110DG111_CC B 106 ? C 111 ? B 107 ? C 110 ? 1 A DG 7 1_555 B DC 2 1_555 A DC 8 1_555 B DG 1 1_555 0.644 -0.270 3.101 2.897 -0.121 29.760 -0.500 -0.673 3.149 -0.235 -5.625 29.897 7 BB_DG107DC108:DG109DC110_CC B 107 ? C 110 ? B 108 ? C 109 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details SSO7D-GTAATTAC # _atom_sites.entry_id 1BF4 _atom_sites.fract_transf_matrix[1][1] 0.021336 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020133 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026560 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N O P S # loop_