HEADER RECEPTOR 02-JUL-98 1BJ8 TITLE THIRD N-TERMINAL DOMAIN OF GP130, NMR, MINIMIZED AVERAGE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GP130; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THIRD N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS RECEPTOR, SIGNAL TRANSDUCER OF IL-6 TYPE CYTOKINES, THIRD N-TERMINAL KEYWDS 2 DOMAIN, TRANSMEMBRANE, GLYCOPROTEIN EXPDTA SOLUTION NMR AUTHOR T.KERNEBECK,S.PFLANZ,G.MULLER-NEWEN,G.KURAPKAT,R.M.SCHEEK,K.DIJKSTRA, AUTHOR 2 P.C.HEINRICH,A.WOLLMER,S.GRZESIEK,J.GROTZINGER REVDAT 3 16-FEB-22 1BJ8 1 REMARK REVDAT 2 24-FEB-09 1BJ8 1 VERSN REVDAT 1 13-JAN-99 1BJ8 0 JRNL AUTH T.KERNEBECK,S.PFLANZ,G.MULLER-NEWEN,G.KURAPKAT,R.M.SCHEEK, JRNL AUTH 2 K.DIJKSTRA,P.C.HEINRICH,A.WOLLMER,S.GRZESIEK,J.GROTZINGER JRNL TITL THE SIGNAL TRANSDUCER GP130: SOLUTION STRUCTURE OF THE JRNL TITL 2 CARBOXY-TERMINAL DOMAIN OF THE CYTOKINE RECEPTOR HOMOLOGY JRNL TITL 3 REGION. JRNL REF PROTEIN SCI. V. 8 5 1999 JRNL REFN ISSN 0961-8368 JRNL PMID 10210178 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.MULLER-NEWEN,S.PFLANZ,U.HASSIEPEN,J.STAHL,A.WOLLMER, REMARK 1 AUTH 2 P.C.HEINRICH,J.GROTZINGER REMARK 1 TITL THE SIGNAL TRANSDUCER GP130--BACTERIAL EXPRESSION, REFOLDING REMARK 1 TITL 2 AND PROPERTIES OF THE CARBOXY-TERMINAL DOMAIN OF THE REMARK 1 TITL 3 CYTOKINE-BINDING MODULE REMARK 1 REF EUR.J.BIOCHEM. V. 247 425 1997 REMARK 1 REFN ISSN 0014-2956 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DDD REMARK 3 AUTHORS : SCHEEK REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FINAL 22 STRUCTURES WERE CALCULATED REMARK 3 USING A TOTAL OF 1575 RESTRAINTS. DISTANCE BOUND DRIVEN DYNAMICS REMARK 3 WAS DONE FOR 1000 STEPS AT 1000 KELVIN, FOLLOWED BY 1000 STEPS REMARK 3 OF SIMULATED ANNEALING TO 10 KELVIN. THE MEAN STRUCTURE WAS REMARK 3 ENERGY MINIMIZED USING THE GROMOS PROGRAMM PACKAGE. REMARK 4 REMARK 4 1BJ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171820. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 200 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : CBCA(CO)NH; CBCANH; C(CO)NH; REMARK 210 HNCA; HBHA(CO)NH; 15N-EDITED REMARK 210 HOHAHA; 13C-EDITED TOCSY; 15N- REMARK 210 EDITED NOESY; 13C-EDITED NOESY; REMARK 210 HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY500; INOVA600; DMX600 REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DDD REMARK 210 METHOD USED : DISTANCE GEOMETRY, RESTRAINED REMARK 210 MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 22 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED PROTEIN REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 2 -103.41 -125.41 REMARK 500 LYS A 3 -169.79 -129.49 REMARK 500 ASN A 7 138.21 3.95 REMARK 500 HIS A 10 -174.33 -68.42 REMARK 500 GLU A 18 -79.17 31.31 REMARK 500 ASN A 30 150.66 -49.08 REMARK 500 SER A 32 -35.57 175.81 REMARK 500 ILE A 33 137.23 -37.20 REMARK 500 LYS A 34 -144.26 -98.31 REMARK 500 SER A 35 38.97 -75.50 REMARK 500 ILE A 37 103.69 49.06 REMARK 500 SER A 54 -152.51 -96.90 REMARK 500 PRO A 58 77.21 -67.81 REMARK 500 GLU A 59 -63.51 -120.28 REMARK 500 THR A 61 43.13 -88.18 REMARK 500 SER A 63 81.72 -164.61 REMARK 500 THR A 64 97.88 36.63 REMARK 500 SER A 66 -14.21 61.12 REMARK 500 ASP A 72 50.03 71.85 REMARK 500 PHE A 76 -11.00 62.31 REMARK 500 GLU A 88 129.67 -28.24 REMARK 500 ASP A 89 -157.07 119.76 REMARK 500 TRP A 94 135.44 -39.78 REMARK 500 TRP A 97 128.23 -5.39 REMARK 500 GLU A 99 177.44 170.19 REMARK 500 TYR A 106 -124.53 33.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 41 0.11 SIDE CHAIN REMARK 500 TYR A 79 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1BJ8 A 3 109 UNP P40189 IL6RB_HUMAN 219 325 SEQRES 1 A 109 MET ASP LYS VAL LYS PRO ASN PRO PRO HIS ASN LEU SER SEQRES 2 A 109 VAL ILE ASN SER GLU GLU LEU SER SER ILE LEU LYS LEU SEQRES 3 A 109 THR TRP THR ASN PRO SER ILE LYS SER VAL ILE ILE LEU SEQRES 4 A 109 LYS TYR ASN ILE GLN TYR ARG THR LYS ASP ALA SER THR SEQRES 5 A 109 TRP SER GLN ILE PRO PRO GLU ASP THR ALA SER THR ARG SEQRES 6 A 109 SER SER PHE THR VAL GLN ASP LEU LYS PRO PHE THR GLU SEQRES 7 A 109 TYR VAL PHE ARG ILE ARG CYS MET LYS GLU ASP GLY LYS SEQRES 8 A 109 GLY TYR TRP SER ASP TRP SER GLU GLU ALA SER GLY ILE SEQRES 9 A 109 THR TYR GLU ASP ARG HELIX 1 1 ASP A 60 ALA A 62 5 3 SHEET 1 A 2 LEU A 24 THR A 27 0 SHEET 2 A 2 SER A 67 VAL A 70 -1 N VAL A 70 O LEU A 24 SHEET 1 B 3 LEU A 39 THR A 47 0 SHEET 2 B 3 GLU A 78 LYS A 87 -1 N MET A 86 O LYS A 40 SHEET 3 B 3 GLU A 99 ILE A 104 -1 N GLY A 103 O TYR A 79 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000