data_1BNK # _entry.id 1BNK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1BNK pdb_00001bnk 10.2210/pdb1bnk/pdb NDB PD0009 ? ? RCSB RCSB008030 ? ? WWPDB D_1000008030 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-10-21 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1BNK _pdbx_database_status.recvd_initial_deposition_date 1998-07-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lau, A.Y.' 1 'Schaerer, O.D.' 2 'Samson, L.' 3 'Verdine, G.L.' 4 'Ellenberger, T.' 5 # _citation.id primary _citation.title 'Crystal structure of a human alkylbase-DNA repair enzyme complexed to DNA: mechanisms for nucleotide flipping and base excision.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 95 _citation.page_first 249 _citation.page_last 258 _citation.year 1998 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9790531 _citation.pdbx_database_id_DOI '10.1016/S0092-8674(00)81755-9' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lau, A.Y.' 1 ? primary 'Scharer, O.D.' 2 ? primary 'Samson, L.' 3 ? primary 'Verdine, G.L.' 4 ? primary 'Ellenberger, T.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*AP*CP*AP*TP*GP*YRRP*TP*TP*GP*CP*CP*T)-3') ; 3832.501 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3') ; 3975.611 1 ? ? ? ? 3 polymer man 'PROTEIN (3-METHYLADENINE DNA GLYCOSYLASE)' 24051.623 1 3.2.2.21 ? ? ? 4 water nat water 18.015 41 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'AAG, ANPG, MPG' # _entity_name_sys.entity_id 3 _entity_name_sys.name E.C.3.2.2.21 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DG)(DA)(DC)(DA)(DT)(DG)(YRR)(DT)(DT)(DG)(DC)(DC)(DT)' GACATGNTTGCCT D ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DC)(DA)(DA)(DT)(DC)(DA)(DT)(DG)(DT)(DC)(DA)' GGCAATCATGTCA E ? 3 'polypeptide(L)' no no ;KGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVY IIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRHVRSQLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQD EAVWLERGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQD ; ;KGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVY IIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRHVRSQLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQD EAVWLERGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQD ; A ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DA n 1 3 DC n 1 4 DA n 1 5 DT n 1 6 DG n 1 7 YRR n 1 8 DT n 1 9 DT n 1 10 DG n 1 11 DC n 1 12 DC n 1 13 DT n 2 1 DG n 2 2 DG n 2 3 DC n 2 4 DA n 2 5 DA n 2 6 DT n 2 7 DC n 2 8 DA n 2 9 DT n 2 10 DG n 2 11 DT n 2 12 DC n 2 13 DA n 3 1 LYS n 3 2 GLY n 3 3 HIS n 3 4 LEU n 3 5 THR n 3 6 ARG n 3 7 LEU n 3 8 GLY n 3 9 LEU n 3 10 GLU n 3 11 PHE n 3 12 PHE n 3 13 ASP n 3 14 GLN n 3 15 PRO n 3 16 ALA n 3 17 VAL n 3 18 PRO n 3 19 LEU n 3 20 ALA n 3 21 ARG n 3 22 ALA n 3 23 PHE n 3 24 LEU n 3 25 GLY n 3 26 GLN n 3 27 VAL n 3 28 LEU n 3 29 VAL n 3 30 ARG n 3 31 ARG n 3 32 LEU n 3 33 PRO n 3 34 ASN n 3 35 GLY n 3 36 THR n 3 37 GLU n 3 38 LEU n 3 39 ARG n 3 40 GLY n 3 41 ARG n 3 42 ILE n 3 43 VAL n 3 44 GLU n 3 45 THR n 3 46 GLU n 3 47 ALA n 3 48 TYR n 3 49 LEU n 3 50 GLY n 3 51 PRO n 3 52 GLU n 3 53 ASP n 3 54 GLU n 3 55 ALA n 3 56 ALA n 3 57 HIS n 3 58 SER n 3 59 ARG n 3 60 GLY n 3 61 GLY n 3 62 ARG n 3 63 GLN n 3 64 THR n 3 65 PRO n 3 66 ARG n 3 67 ASN n 3 68 ARG n 3 69 GLY n 3 70 MET n 3 71 PHE n 3 72 MET n 3 73 LYS n 3 74 PRO n 3 75 GLY n 3 76 THR n 3 77 LEU n 3 78 TYR n 3 79 VAL n 3 80 TYR n 3 81 ILE n 3 82 ILE n 3 83 TYR n 3 84 GLY n 3 85 MET n 3 86 TYR n 3 87 PHE n 3 88 CYS n 3 89 MET n 3 90 ASN n 3 91 ILE n 3 92 SER n 3 93 SER n 3 94 GLN n 3 95 GLY n 3 96 ASP n 3 97 GLY n 3 98 ALA n 3 99 CYS n 3 100 VAL n 3 101 LEU n 3 102 LEU n 3 103 ARG n 3 104 ALA n 3 105 LEU n 3 106 GLU n 3 107 PRO n 3 108 LEU n 3 109 GLU n 3 110 GLY n 3 111 LEU n 3 112 GLU n 3 113 THR n 3 114 MET n 3 115 ARG n 3 116 HIS n 3 117 VAL n 3 118 ARG n 3 119 SER n 3 120 GLN n 3 121 LEU n 3 122 ARG n 3 123 LYS n 3 124 GLY n 3 125 THR n 3 126 ALA n 3 127 SER n 3 128 ARG n 3 129 VAL n 3 130 LEU n 3 131 LYS n 3 132 ASP n 3 133 ARG n 3 134 GLU n 3 135 LEU n 3 136 CYS n 3 137 SER n 3 138 GLY n 3 139 PRO n 3 140 SER n 3 141 LYS n 3 142 LEU n 3 143 CYS n 3 144 GLN n 3 145 ALA n 3 146 LEU n 3 147 ALA n 3 148 ILE n 3 149 ASN n 3 150 LYS n 3 151 SER n 3 152 PHE n 3 153 ASP n 3 154 GLN n 3 155 ARG n 3 156 ASP n 3 157 LEU n 3 158 ALA n 3 159 GLN n 3 160 ASP n 3 161 GLU n 3 162 ALA n 3 163 VAL n 3 164 TRP n 3 165 LEU n 3 166 GLU n 3 167 ARG n 3 168 GLY n 3 169 PRO n 3 170 LEU n 3 171 GLU n 3 172 PRO n 3 173 SER n 3 174 GLU n 3 175 PRO n 3 176 ALA n 3 177 VAL n 3 178 VAL n 3 179 ALA n 3 180 ALA n 3 181 ALA n 3 182 ARG n 3 183 VAL n 3 184 GLY n 3 185 VAL n 3 186 GLY n 3 187 HIS n 3 188 ALA n 3 189 GLY n 3 190 GLU n 3 191 TRP n 3 192 ALA n 3 193 ARG n 3 194 LYS n 3 195 PRO n 3 196 LEU n 3 197 ARG n 3 198 PHE n 3 199 TYR n 3 200 VAL n 3 201 ARG n 3 202 GLY n 3 203 SER n 3 204 PRO n 3 205 TRP n 3 206 VAL n 3 207 SER n 3 208 VAL n 3 209 VAL n 3 210 ASP n 3 211 ARG n 3 212 VAL n 3 213 ALA n 3 214 GLU n 3 215 GLN n 3 216 ASP n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ LIVER _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene AAG _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location CYTOPLASM _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PLM1-AAG _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 YRR 'DNA linking' . '3-HYDROXY-PYRROLIDIN-2-YLMETHYL-MONOPHOSPHATE GROUP' ? 'C5 H12 N O5 P' 197.126 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G D . n A 1 2 DA 2 2 2 DA A D . n A 1 3 DC 3 3 3 DC C D . n A 1 4 DA 4 4 4 DA A D . n A 1 5 DT 5 5 5 DT T D . n A 1 6 DG 6 6 6 DG G D . n A 1 7 YRR 7 7 7 YRR PYR D . n A 1 8 DT 8 8 8 DT T D . n A 1 9 DT 9 9 9 DT T D . n A 1 10 DG 10 10 10 DG G D . n A 1 11 DC 11 11 11 DC C D . n A 1 12 DC 12 12 12 DC C D . n A 1 13 DT 13 13 13 DT T D . n B 2 1 DG 1 14 14 DG G E . n B 2 2 DG 2 15 15 DG G E . n B 2 3 DC 3 16 16 DC C E . n B 2 4 DA 4 17 17 DA A E . n B 2 5 DA 5 18 18 DA A E . n B 2 6 DT 6 19 19 DT T E . n B 2 7 DC 7 20 20 DC C E . n B 2 8 DA 8 21 21 DA A E . n B 2 9 DT 9 22 22 DT T E . n B 2 10 DG 10 23 23 DG G E . n B 2 11 DT 11 24 24 DT T E . n B 2 12 DC 12 25 25 DC C E . n B 2 13 DA 13 26 26 DA A E . n C 3 1 LYS 1 80 80 LYS LYS A . n C 3 2 GLY 2 81 81 GLY GLY A . n C 3 3 HIS 3 82 82 HIS HIS A . n C 3 4 LEU 4 83 83 LEU LEU A . n C 3 5 THR 5 84 84 THR THR A . n C 3 6 ARG 6 85 85 ARG ARG A . n C 3 7 LEU 7 86 86 LEU LEU A . n C 3 8 GLY 8 87 87 GLY GLY A . n C 3 9 LEU 9 88 88 LEU LEU A . n C 3 10 GLU 10 89 89 GLU GLU A . n C 3 11 PHE 11 90 90 PHE PHE A . n C 3 12 PHE 12 91 91 PHE PHE A . n C 3 13 ASP 13 92 92 ASP ASP A . n C 3 14 GLN 14 93 93 GLN GLN A . n C 3 15 PRO 15 94 94 PRO PRO A . n C 3 16 ALA 16 95 95 ALA ALA A . n C 3 17 VAL 17 96 96 VAL VAL A . n C 3 18 PRO 18 97 97 PRO PRO A . n C 3 19 LEU 19 98 98 LEU LEU A . n C 3 20 ALA 20 99 99 ALA ALA A . n C 3 21 ARG 21 100 100 ARG ARG A . n C 3 22 ALA 22 101 101 ALA ALA A . n C 3 23 PHE 23 102 102 PHE PHE A . n C 3 24 LEU 24 103 103 LEU LEU A . n C 3 25 GLY 25 104 104 GLY GLY A . n C 3 26 GLN 26 105 105 GLN GLN A . n C 3 27 VAL 27 106 106 VAL VAL A . n C 3 28 LEU 28 107 107 LEU LEU A . n C 3 29 VAL 29 108 108 VAL VAL A . n C 3 30 ARG 30 109 109 ARG ARG A . n C 3 31 ARG 31 110 110 ARG ARG A . n C 3 32 LEU 32 111 111 LEU LEU A . n C 3 33 PRO 33 112 112 PRO PRO A . n C 3 34 ASN 34 113 113 ASN ASN A . n C 3 35 GLY 35 114 114 GLY GLY A . n C 3 36 THR 36 115 115 THR THR A . n C 3 37 GLU 37 116 116 GLU GLU A . n C 3 38 LEU 38 117 117 LEU LEU A . n C 3 39 ARG 39 118 118 ARG ARG A . n C 3 40 GLY 40 119 119 GLY GLY A . n C 3 41 ARG 41 120 120 ARG ARG A . n C 3 42 ILE 42 121 121 ILE ILE A . n C 3 43 VAL 43 122 122 VAL VAL A . n C 3 44 GLU 44 123 123 GLU GLU A . n C 3 45 THR 45 124 124 THR THR A . n C 3 46 GLU 46 125 125 GLU GLU A . n C 3 47 ALA 47 126 126 ALA ALA A . n C 3 48 TYR 48 127 127 TYR TYR A . n C 3 49 LEU 49 128 128 LEU LEU A . n C 3 50 GLY 50 129 129 GLY GLY A . n C 3 51 PRO 51 130 130 PRO PRO A . n C 3 52 GLU 52 131 131 GLU GLU A . n C 3 53 ASP 53 132 132 ASP ASP A . n C 3 54 GLU 54 133 133 GLU GLU A . n C 3 55 ALA 55 134 134 ALA ALA A . n C 3 56 ALA 56 135 135 ALA ALA A . n C 3 57 HIS 57 136 136 HIS HIS A . n C 3 58 SER 58 137 137 SER SER A . n C 3 59 ARG 59 138 138 ARG ARG A . n C 3 60 GLY 60 139 139 GLY GLY A . n C 3 61 GLY 61 140 140 GLY GLY A . n C 3 62 ARG 62 141 141 ARG ARG A . n C 3 63 GLN 63 142 142 GLN ALA A . n C 3 64 THR 64 143 143 THR THR A . n C 3 65 PRO 65 144 144 PRO PRO A . n C 3 66 ARG 66 145 145 ARG ARG A . n C 3 67 ASN 67 146 146 ASN ASN A . n C 3 68 ARG 68 147 147 ARG ALA A . n C 3 69 GLY 69 148 148 GLY GLY A . n C 3 70 MET 70 149 149 MET MET A . n C 3 71 PHE 71 150 150 PHE PHE A . n C 3 72 MET 72 151 151 MET MET A . n C 3 73 LYS 73 152 152 LYS LYS A . n C 3 74 PRO 74 153 153 PRO PRO A . n C 3 75 GLY 75 154 154 GLY GLY A . n C 3 76 THR 76 155 155 THR THR A . n C 3 77 LEU 77 156 156 LEU LEU A . n C 3 78 TYR 78 157 157 TYR TYR A . n C 3 79 VAL 79 158 158 VAL VAL A . n C 3 80 TYR 80 159 159 TYR TYR A . n C 3 81 ILE 81 160 160 ILE ILE A . n C 3 82 ILE 82 161 161 ILE ILE A . n C 3 83 TYR 83 162 162 TYR TYR A . n C 3 84 GLY 84 163 163 GLY GLY A . n C 3 85 MET 85 164 164 MET MET A . n C 3 86 TYR 86 165 165 TYR TYR A . n C 3 87 PHE 87 166 166 PHE PHE A . n C 3 88 CYS 88 167 167 CYS CYS A . n C 3 89 MET 89 168 168 MET MET A . n C 3 90 ASN 90 169 169 ASN ASN A . n C 3 91 ILE 91 170 170 ILE ILE A . n C 3 92 SER 92 171 171 SER SER A . n C 3 93 SER 93 172 172 SER SER A . n C 3 94 GLN 94 173 173 GLN GLN A . n C 3 95 GLY 95 174 174 GLY GLY A . n C 3 96 ASP 96 175 175 ASP ASP A . n C 3 97 GLY 97 176 176 GLY GLY A . n C 3 98 ALA 98 177 177 ALA ALA A . n C 3 99 CYS 99 178 178 CYS CYS A . n C 3 100 VAL 100 179 179 VAL VAL A . n C 3 101 LEU 101 180 180 LEU LEU A . n C 3 102 LEU 102 181 181 LEU LEU A . n C 3 103 ARG 103 182 182 ARG ARG A . n C 3 104 ALA 104 183 183 ALA ALA A . n C 3 105 LEU 105 184 184 LEU LEU A . n C 3 106 GLU 106 185 185 GLU GLU A . n C 3 107 PRO 107 186 186 PRO PRO A . n C 3 108 LEU 108 187 187 LEU LEU A . n C 3 109 GLU 109 188 188 GLU GLU A . n C 3 110 GLY 110 189 189 GLY GLY A . n C 3 111 LEU 111 190 190 LEU LEU A . n C 3 112 GLU 112 191 191 GLU GLU A . n C 3 113 THR 113 192 192 THR THR A . n C 3 114 MET 114 193 193 MET MET A . n C 3 115 ARG 115 194 194 ARG ARG A . n C 3 116 HIS 116 195 ? ? ? A . n C 3 117 VAL 117 196 ? ? ? A . n C 3 118 ARG 118 197 ? ? ? A . n C 3 119 SER 119 198 ? ? ? A . n C 3 120 GLN 120 199 199 GLN GLN A . n C 3 121 LEU 121 200 200 LEU LEU A . n C 3 122 ARG 122 201 201 ARG ARG A . n C 3 123 LYS 123 202 ? ? ? A . n C 3 124 GLY 124 203 ? ? ? A . n C 3 125 THR 125 204 ? ? ? A . n C 3 126 ALA 126 205 ? ? ? A . n C 3 127 SER 127 206 206 SER SER A . n C 3 128 ARG 128 207 207 ARG ALA A . n C 3 129 VAL 129 208 208 VAL VAL A . n C 3 130 LEU 130 209 209 LEU LEU A . n C 3 131 LYS 131 210 210 LYS ALA A . n C 3 132 ASP 132 211 211 ASP ASP A . n C 3 133 ARG 133 212 212 ARG ARG A . n C 3 134 GLU 134 213 213 GLU GLU A . n C 3 135 LEU 135 214 214 LEU LEU A . n C 3 136 CYS 136 215 215 CYS CYS A . n C 3 137 SER 137 216 216 SER SER A . n C 3 138 GLY 138 217 217 GLY GLY A . n C 3 139 PRO 139 218 218 PRO PRO A . n C 3 140 SER 140 219 219 SER SER A . n C 3 141 LYS 141 220 220 LYS LYS A . n C 3 142 LEU 142 221 221 LEU LEU A . n C 3 143 CYS 143 222 222 CYS CYS A . n C 3 144 GLN 144 223 223 GLN GLN A . n C 3 145 ALA 145 224 224 ALA ALA A . n C 3 146 LEU 146 225 225 LEU LEU A . n C 3 147 ALA 147 226 226 ALA ALA A . n C 3 148 ILE 148 227 227 ILE ILE A . n C 3 149 ASN 149 228 228 ASN ASN A . n C 3 150 LYS 150 229 229 LYS LYS A . n C 3 151 SER 151 230 230 SER SER A . n C 3 152 PHE 152 231 231 PHE PHE A . n C 3 153 ASP 153 232 232 ASP ASP A . n C 3 154 GLN 154 233 233 GLN GLN A . n C 3 155 ARG 155 234 234 ARG ARG A . n C 3 156 ASP 156 235 235 ASP ASP A . n C 3 157 LEU 157 236 236 LEU LEU A . n C 3 158 ALA 158 237 237 ALA ALA A . n C 3 159 GLN 159 238 238 GLN GLN A . n C 3 160 ASP 160 239 239 ASP ASP A . n C 3 161 GLU 161 240 240 GLU GLU A . n C 3 162 ALA 162 241 241 ALA ALA A . n C 3 163 VAL 163 242 242 VAL VAL A . n C 3 164 TRP 164 243 243 TRP TRP A . n C 3 165 LEU 165 244 244 LEU LEU A . n C 3 166 GLU 166 245 245 GLU GLU A . n C 3 167 ARG 167 246 246 ARG ARG A . n C 3 168 GLY 168 247 ? ? ? A . n C 3 169 PRO 169 248 ? ? ? A . n C 3 170 LEU 170 249 ? ? ? A . n C 3 171 GLU 171 250 ? ? ? A . n C 3 172 PRO 172 251 ? ? ? A . n C 3 173 SER 173 252 ? ? ? A . n C 3 174 GLU 174 253 ? ? ? A . n C 3 175 PRO 175 254 ? ? ? A . n C 3 176 ALA 176 255 255 ALA ALA A . n C 3 177 VAL 177 256 256 VAL VAL A . n C 3 178 VAL 178 257 257 VAL VAL A . n C 3 179 ALA 179 258 258 ALA ALA A . n C 3 180 ALA 180 259 259 ALA ALA A . n C 3 181 ALA 181 260 260 ALA ALA A . n C 3 182 ARG 182 261 261 ARG ARG A . n C 3 183 VAL 183 262 262 VAL VAL A . n C 3 184 GLY 184 263 263 GLY GLY A . n C 3 185 VAL 185 264 264 VAL VAL A . n C 3 186 GLY 186 265 265 GLY GLY A . n C 3 187 HIS 187 266 266 HIS HIS A . n C 3 188 ALA 188 267 267 ALA ALA A . n C 3 189 GLY 189 268 268 GLY GLY A . n C 3 190 GLU 190 269 269 GLU GLU A . n C 3 191 TRP 191 270 270 TRP TRP A . n C 3 192 ALA 192 271 271 ALA ALA A . n C 3 193 ARG 193 272 272 ARG ARG A . n C 3 194 LYS 194 273 273 LYS LYS A . n C 3 195 PRO 195 274 274 PRO PRO A . n C 3 196 LEU 196 275 275 LEU LEU A . n C 3 197 ARG 197 276 276 ARG ARG A . n C 3 198 PHE 198 277 277 PHE PHE A . n C 3 199 TYR 199 278 278 TYR TYR A . n C 3 200 VAL 200 279 279 VAL VAL A . n C 3 201 ARG 201 280 280 ARG ARG A . n C 3 202 GLY 202 281 281 GLY GLY A . n C 3 203 SER 203 282 282 SER SER A . n C 3 204 PRO 204 283 283 PRO PRO A . n C 3 205 TRP 205 284 284 TRP TRP A . n C 3 206 VAL 206 285 285 VAL VAL A . n C 3 207 SER 207 286 286 SER SER A . n C 3 208 VAL 208 287 287 VAL VAL A . n C 3 209 VAL 209 288 288 VAL VAL A . n C 3 210 ASP 210 289 289 ASP ASP A . n C 3 211 ARG 211 290 290 ARG ARG A . n C 3 212 VAL 212 291 291 VAL ALA A . n C 3 213 ALA 213 292 292 ALA ALA A . n C 3 214 GLU 214 293 293 GLU GLU A . n C 3 215 GLN 215 294 294 GLN ALA A . n C 3 216 ASP 216 295 295 ASP ASP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 14 6 HOH HOH D . D 4 HOH 2 15 15 HOH HOH D . D 4 HOH 3 16 19 HOH HOH D . D 4 HOH 4 17 29 HOH HOH D . E 4 HOH 1 27 23 HOH HOH E . E 4 HOH 2 28 25 HOH HOH E . E 4 HOH 3 29 31 HOH HOH E . E 4 HOH 4 30 32 HOH HOH E . E 4 HOH 5 31 36 HOH HOH E . F 4 HOH 1 1 1 HOH HOH A . F 4 HOH 2 2 2 HOH HOH A . F 4 HOH 3 3 3 HOH HOH A . F 4 HOH 4 4 4 HOH HOH A . F 4 HOH 5 5 5 HOH HOH A . F 4 HOH 6 7 7 HOH HOH A . F 4 HOH 7 8 8 HOH HOH A . F 4 HOH 8 9 9 HOH HOH A . F 4 HOH 9 10 10 HOH HOH A . F 4 HOH 10 11 11 HOH HOH A . F 4 HOH 11 12 12 HOH HOH A . F 4 HOH 12 13 13 HOH HOH A . F 4 HOH 13 14 14 HOH HOH A . F 4 HOH 14 16 16 HOH HOH A . F 4 HOH 15 17 17 HOH HOH A . F 4 HOH 16 18 18 HOH HOH A . F 4 HOH 17 20 20 HOH HOH A . F 4 HOH 18 21 21 HOH HOH A . F 4 HOH 19 22 22 HOH HOH A . F 4 HOH 20 24 24 HOH HOH A . F 4 HOH 21 26 26 HOH HOH A . F 4 HOH 22 27 27 HOH HOH A . F 4 HOH 23 28 28 HOH HOH A . F 4 HOH 24 30 30 HOH HOH A . F 4 HOH 25 33 33 HOH HOH A . F 4 HOH 26 34 34 HOH HOH A . F 4 HOH 27 35 35 HOH HOH A . F 4 HOH 28 37 37 HOH HOH A . F 4 HOH 29 38 38 HOH HOH A . F 4 HOH 30 39 39 HOH HOH A . F 4 HOH 31 40 40 HOH HOH A . F 4 HOH 32 41 41 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 142 ? CG ? C GLN 63 CG 2 1 Y 1 A GLN 142 ? CD ? C GLN 63 CD 3 1 Y 1 A GLN 142 ? OE1 ? C GLN 63 OE1 4 1 Y 1 A GLN 142 ? NE2 ? C GLN 63 NE2 5 1 Y 1 A ARG 147 ? CG ? C ARG 68 CG 6 1 Y 1 A ARG 147 ? CD ? C ARG 68 CD 7 1 Y 1 A ARG 147 ? NE ? C ARG 68 NE 8 1 Y 1 A ARG 147 ? CZ ? C ARG 68 CZ 9 1 Y 1 A ARG 147 ? NH1 ? C ARG 68 NH1 10 1 Y 1 A ARG 147 ? NH2 ? C ARG 68 NH2 11 1 Y 1 A ARG 207 ? CG ? C ARG 128 CG 12 1 Y 1 A ARG 207 ? CD ? C ARG 128 CD 13 1 Y 1 A ARG 207 ? NE ? C ARG 128 NE 14 1 Y 1 A ARG 207 ? CZ ? C ARG 128 CZ 15 1 Y 1 A ARG 207 ? NH1 ? C ARG 128 NH1 16 1 Y 1 A ARG 207 ? NH2 ? C ARG 128 NH2 17 1 Y 1 A LYS 210 ? CG ? C LYS 131 CG 18 1 Y 1 A LYS 210 ? CD ? C LYS 131 CD 19 1 Y 1 A LYS 210 ? CE ? C LYS 131 CE 20 1 Y 1 A LYS 210 ? NZ ? C LYS 131 NZ 21 1 Y 1 A VAL 291 ? CG1 ? C VAL 212 CG1 22 1 Y 1 A VAL 291 ? CG2 ? C VAL 212 CG2 23 1 Y 1 A GLN 294 ? CG ? C GLN 215 CG 24 1 Y 1 A GLN 294 ? CD ? C GLN 215 CD 25 1 Y 1 A GLN 294 ? OE1 ? C GLN 215 OE1 26 1 Y 1 A GLN 294 ? NE2 ? C GLN 215 NE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MLPHARE phasing . ? 1 SHARP phasing . ? 2 CNS refinement 0.3C ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _cell.entry_id 1BNK _cell.length_a 43.750 _cell.length_b 57.100 _cell.length_c 128.450 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BNK _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1BNK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.49 _exptl_crystal.density_percent_sol 56 _exptl_crystal.description 'DATA WERE COLLECTED USING THE OSCILLATION METHOD' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'pH 7.5' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 113 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-03-15 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.5418 1.0 2 1.0100 1.0 3 0.9787 1.0 4 0.9784 1.0 5 0.9500 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '1.5418, 1.0100, 0.9787, 0.9784, 0.9500' # _reflns.entry_id 1BNK _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.7 _reflns.number_obs 9321 _reflns.number_all ? _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.0460000 _reflns.pdbx_netI_over_sigmaI 15 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.82 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.1450000 _reflns_shell.meanI_over_sigI_obs 10 _reflns_shell.pdbx_redundancy 9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1BNK _refine.ls_number_reflns_obs 8482 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF 10000.0 _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 2.7 _refine.ls_percent_reflns_obs 51.7 _refine.ls_R_factor_obs 0.2160000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2160000 _refine.ls_R_factor_R_free 0.2600000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10 _refine.ls_number_reflns_R_free 518 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1547 _refine_hist.pdbx_number_atoms_nucleic_acid 517 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 41 _refine_hist.number_atoms_total 2105 _refine_hist.d_res_high 2.7 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.36 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 2.70 _refine_ls_shell.d_res_low 2.79 _refine_ls_shell.number_reflns_R_work 642 _refine_ls_shell.R_factor_R_work 0.2650000 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3020000 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 54 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1BNK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1BNK _struct.title 'HUMAN 3-METHYLADENINE DNA GLYCOSYLASE COMPLEXED TO DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1BNK _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'DNA REPAIR, DNA GLYCOSYLASE, HYDROLASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP 3MG_HUMAN 3 P29372 ? ? ? 2 PDB 1BNK 1 1BNK ? ? ? 3 PDB 1BNK 2 1BNK ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1BNK A 1 ? 216 ? P29372 80 ? 295 ? 80 295 2 2 1BNK D 1 ? 13 ? 1BNK 1 ? 13 ? 1 13 3 3 1BNK E 1 ? 13 ? 1BNK 14 ? 26 ? 14 26 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU C 9 ? PHE C 12 ? LEU A 88 PHE A 91 1 ? 4 HELX_P HELX_P2 2 ALA C 16 ? PHE C 23 ? ALA A 95 PHE A 102 1 ? 8 HELX_P HELX_P3 3 ARG C 59 ? GLY C 61 ? ARG A 138 GLY A 140 5 ? 3 HELX_P HELX_P4 4 ASN C 67 ? PHE C 71 ? ASN A 146 PHE A 150 5 ? 5 HELX_P HELX_P5 6 ASP C 132 ? GLU C 134 ? ASP A 211 GLU A 213 5 ? 3 HELX_P HELX_P6 7 PRO C 139 ? ALA C 145 ? PRO A 218 ALA A 224 1 ? 7 HELX_P HELX_P7 8 LYS C 150 ? PHE C 152 ? LYS A 229 PHE A 231 5 ? 3 HELX_P HELX_P8 9 GLY C 186 ? ALA C 192 ? GLY A 265 ALA A 271 5 ? 7 HELX_P HELX_P9 10 ARG C 211 ? GLU C 214 ? ARG A 290 GLU A 293 1 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 6 "O3'" ? ? ? 1_555 A YRR 7 P ? ? D DG 6 D YRR 7 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale2 covale both ? A YRR 7 "O3'" ? ? ? 1_555 A DT 8 P ? ? D YRR 7 D DT 8 1_555 ? ? ? ? ? ? ? 1.605 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 12 N3 ? ? D DG 1 E DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 12 O2 ? ? D DG 1 E DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 12 N4 ? ? D DG 1 E DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 11 N3 ? ? D DA 2 E DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 11 O4 ? ? D DA 2 E DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? D DC 3 E DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? D DC 3 E DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? D DC 3 E DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 9 N3 ? ? D DA 4 E DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 9 O4 ? ? D DA 4 E DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 8 N1 ? ? D DT 5 E DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 8 N6 ? ? D DT 5 E DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 7 N3 ? ? D DG 6 E DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 7 O2 ? ? D DG 6 E DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 7 N4 ? ? D DG 6 E DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? D DT 8 E DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? D DT 8 E DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 4 N1 ? ? D DT 9 E DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 4 N6 ? ? D DT 9 E DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? D DG 10 E DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? D DG 10 E DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? D DG 10 E DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? D DC 11 E DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? D DC 11 E DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? D DC 11 E DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 1 N1 ? ? D DC 12 E DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 1 O6 ? ? D DC 12 E DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 1 N2 ? ? D DC 12 E DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL C 163 ? GLU C 166 ? VAL A 242 GLU A 245 A 2 VAL C 27 ? ARG C 31 ? VAL A 106 ARG A 110 A 3 GLU C 37 ? ILE C 42 ? GLU A 116 ILE A 121 A 4 LEU C 105 ? GLU C 109 ? LEU A 184 GLU A 188 B 1 LEU C 77 ? ILE C 82 ? LEU A 156 ILE A 161 B 2 TYR C 86 ? SER C 92 ? TYR A 165 SER A 171 B 3 CYS C 99 ? ALA C 104 ? CYS A 178 ALA A 183 B 4 GLU C 44 ? TYR C 48 ? GLU A 123 TYR A 127 B 5 PRO C 195 ? VAL C 200 ? PRO A 274 VAL A 279 B 6 VAL C 177 ? ALA C 181 ? VAL A 256 ALA A 260 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TRP C 164 ? O TRP A 243 N VAL C 29 ? N VAL A 108 A 2 3 O LEU C 28 ? O LEU A 107 N GLY C 40 ? N GLY A 119 A 3 4 O ARG C 39 ? O ARG A 118 N GLU C 109 ? N GLU A 188 B 1 2 O TYR C 78 ? O TYR A 157 N ASN C 90 ? N ASN A 169 B 2 3 O ILE C 91 ? O ILE A 170 N VAL C 100 ? N VAL A 179 B 3 4 O CYS C 99 ? O CYS A 178 N TYR C 48 ? N TYR A 127 B 4 5 O THR C 45 ? O THR A 124 N PHE C 198 ? N PHE A 277 B 5 6 O LEU C 196 ? O LEU A 275 N ALA C 180 ? N ALA A 259 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 164 ? ? -160.30 -29.07 2 1 LYS A 229 ? ? -47.46 -19.03 3 1 VAL A 264 ? ? -140.33 30.29 4 1 PRO A 274 ? ? -69.89 78.18 # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 C _pdbx_validate_polymer_linkage.auth_asym_id_1 A _pdbx_validate_polymer_linkage.auth_comp_id_1 ARG _pdbx_validate_polymer_linkage.auth_seq_id_1 207 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 N _pdbx_validate_polymer_linkage.auth_asym_id_2 A _pdbx_validate_polymer_linkage.auth_comp_id_2 VAL _pdbx_validate_polymer_linkage.auth_seq_id_2 208 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 11.37 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 195 ? C HIS 116 2 1 Y 1 A VAL 196 ? C VAL 117 3 1 Y 1 A ARG 197 ? C ARG 118 4 1 Y 1 A SER 198 ? C SER 119 5 1 Y 1 A LYS 202 ? C LYS 123 6 1 Y 1 A GLY 203 ? C GLY 124 7 1 Y 1 A THR 204 ? C THR 125 8 1 Y 1 A ALA 205 ? C ALA 126 9 1 Y 1 A GLY 247 ? C GLY 168 10 1 Y 1 A PRO 248 ? C PRO 169 11 1 Y 1 A LEU 249 ? C LEU 170 12 1 Y 1 A GLU 250 ? C GLU 171 13 1 Y 1 A PRO 251 ? C PRO 172 14 1 Y 1 A SER 252 ? C SER 173 15 1 Y 1 A GLU 253 ? C GLU 174 16 1 Y 1 A PRO 254 ? C PRO 175 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PHE N N N N 393 PHE CA C N S 394 PHE C C N N 395 PHE O O N N 396 PHE CB C N N 397 PHE CG C Y N 398 PHE CD1 C Y N 399 PHE CD2 C Y N 400 PHE CE1 C Y N 401 PHE CE2 C Y N 402 PHE CZ C Y N 403 PHE OXT O N N 404 PHE H H N N 405 PHE H2 H N N 406 PHE HA H N N 407 PHE HB2 H N N 408 PHE HB3 H N N 409 PHE HD1 H N N 410 PHE HD2 H N N 411 PHE HE1 H N N 412 PHE HE2 H N N 413 PHE HZ H N N 414 PHE HXT H N N 415 PRO N N N N 416 PRO CA C N S 417 PRO C C N N 418 PRO O O N N 419 PRO CB C N N 420 PRO CG C N N 421 PRO CD C N N 422 PRO OXT O N N 423 PRO H H N N 424 PRO HA H N N 425 PRO HB2 H N N 426 PRO HB3 H N N 427 PRO HG2 H N N 428 PRO HG3 H N N 429 PRO HD2 H N N 430 PRO HD3 H N N 431 PRO HXT H N N 432 SER N N N N 433 SER CA C N S 434 SER C C N N 435 SER O O N N 436 SER CB C N N 437 SER OG O N N 438 SER OXT O N N 439 SER H H N N 440 SER H2 H N N 441 SER HA H N N 442 SER HB2 H N N 443 SER HB3 H N N 444 SER HG H N N 445 SER HXT H N N 446 THR N N N N 447 THR CA C N S 448 THR C C N N 449 THR O O N N 450 THR CB C N R 451 THR OG1 O N N 452 THR CG2 C N N 453 THR OXT O N N 454 THR H H N N 455 THR H2 H N N 456 THR HA H N N 457 THR HB H N N 458 THR HG1 H N N 459 THR HG21 H N N 460 THR HG22 H N N 461 THR HG23 H N N 462 THR HXT H N N 463 TRP N N N N 464 TRP CA C N S 465 TRP C C N N 466 TRP O O N N 467 TRP CB C N N 468 TRP CG C Y N 469 TRP CD1 C Y N 470 TRP CD2 C Y N 471 TRP NE1 N Y N 472 TRP CE2 C Y N 473 TRP CE3 C Y N 474 TRP CZ2 C Y N 475 TRP CZ3 C Y N 476 TRP CH2 C Y N 477 TRP OXT O N N 478 TRP H H N N 479 TRP H2 H N N 480 TRP HA H N N 481 TRP HB2 H N N 482 TRP HB3 H N N 483 TRP HD1 H N N 484 TRP HE1 H N N 485 TRP HE3 H N N 486 TRP HZ2 H N N 487 TRP HZ3 H N N 488 TRP HH2 H N N 489 TRP HXT H N N 490 TYR N N N N 491 TYR CA C N S 492 TYR C C N N 493 TYR O O N N 494 TYR CB C N N 495 TYR CG C Y N 496 TYR CD1 C Y N 497 TYR CD2 C Y N 498 TYR CE1 C Y N 499 TYR CE2 C Y N 500 TYR CZ C Y N 501 TYR OH O N N 502 TYR OXT O N N 503 TYR H H N N 504 TYR H2 H N N 505 TYR HA H N N 506 TYR HB2 H N N 507 TYR HB3 H N N 508 TYR HD1 H N N 509 TYR HD2 H N N 510 TYR HE1 H N N 511 TYR HE2 H N N 512 TYR HH H N N 513 TYR HXT H N N 514 VAL N N N N 515 VAL CA C N S 516 VAL C C N N 517 VAL O O N N 518 VAL CB C N N 519 VAL CG1 C N N 520 VAL CG2 C N N 521 VAL OXT O N N 522 VAL H H N N 523 VAL H2 H N N 524 VAL HA H N N 525 VAL HB H N N 526 VAL HG11 H N N 527 VAL HG12 H N N 528 VAL HG13 H N N 529 VAL HG21 H N N 530 VAL HG22 H N N 531 VAL HG23 H N N 532 VAL HXT H N N 533 YRR OP3 O N N 534 YRR P P N N 535 YRR OP1 O N N 536 YRR OP2 O N N 537 YRR "O5'" O N N 538 YRR "C5'" C N N 539 YRR "C4'" C N R 540 YRR "N4'" N N N 541 YRR "C3'" C N S 542 YRR "O3'" O N N 543 YRR "C2'" C N N 544 YRR "C1'" C N N 545 YRR HOP3 H N N 546 YRR HC51 H N N 547 YRR HC52 H N N 548 YRR HC4 H N N 549 YRR HN4 H N N 550 YRR HC3 H N N 551 YRR "HO3'" H N N 552 YRR HC21 H N N 553 YRR HC22 H N N 554 YRR HC11 H N N 555 YRR HC12 H N N 556 YRR HO1 H N N 557 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TRP N CA sing N N 455 TRP N H sing N N 456 TRP N H2 sing N N 457 TRP CA C sing N N 458 TRP CA CB sing N N 459 TRP CA HA sing N N 460 TRP C O doub N N 461 TRP C OXT sing N N 462 TRP CB CG sing N N 463 TRP CB HB2 sing N N 464 TRP CB HB3 sing N N 465 TRP CG CD1 doub Y N 466 TRP CG CD2 sing Y N 467 TRP CD1 NE1 sing Y N 468 TRP CD1 HD1 sing N N 469 TRP CD2 CE2 doub Y N 470 TRP CD2 CE3 sing Y N 471 TRP NE1 CE2 sing Y N 472 TRP NE1 HE1 sing N N 473 TRP CE2 CZ2 sing Y N 474 TRP CE3 CZ3 doub Y N 475 TRP CE3 HE3 sing N N 476 TRP CZ2 CH2 doub Y N 477 TRP CZ2 HZ2 sing N N 478 TRP CZ3 CH2 sing Y N 479 TRP CZ3 HZ3 sing N N 480 TRP CH2 HH2 sing N N 481 TRP OXT HXT sing N N 482 TYR N CA sing N N 483 TYR N H sing N N 484 TYR N H2 sing N N 485 TYR CA C sing N N 486 TYR CA CB sing N N 487 TYR CA HA sing N N 488 TYR C O doub N N 489 TYR C OXT sing N N 490 TYR CB CG sing N N 491 TYR CB HB2 sing N N 492 TYR CB HB3 sing N N 493 TYR CG CD1 doub Y N 494 TYR CG CD2 sing Y N 495 TYR CD1 CE1 sing Y N 496 TYR CD1 HD1 sing N N 497 TYR CD2 CE2 doub Y N 498 TYR CD2 HD2 sing N N 499 TYR CE1 CZ doub Y N 500 TYR CE1 HE1 sing N N 501 TYR CE2 CZ sing Y N 502 TYR CE2 HE2 sing N N 503 TYR CZ OH sing N N 504 TYR OH HH sing N N 505 TYR OXT HXT sing N N 506 VAL N CA sing N N 507 VAL N H sing N N 508 VAL N H2 sing N N 509 VAL CA C sing N N 510 VAL CA CB sing N N 511 VAL CA HA sing N N 512 VAL C O doub N N 513 VAL C OXT sing N N 514 VAL CB CG1 sing N N 515 VAL CB CG2 sing N N 516 VAL CB HB sing N N 517 VAL CG1 HG11 sing N N 518 VAL CG1 HG12 sing N N 519 VAL CG1 HG13 sing N N 520 VAL CG2 HG21 sing N N 521 VAL CG2 HG22 sing N N 522 VAL CG2 HG23 sing N N 523 VAL OXT HXT sing N N 524 YRR OP3 P sing N N 525 YRR OP3 HOP3 sing N N 526 YRR P OP1 doub N N 527 YRR P OP2 sing N N 528 YRR P "O5'" sing N N 529 YRR "O5'" "C5'" sing N N 530 YRR "C5'" "C4'" sing N N 531 YRR "C5'" HC51 sing N N 532 YRR "C5'" HC52 sing N N 533 YRR "C4'" "N4'" sing N N 534 YRR "C4'" "C3'" sing N N 535 YRR "C4'" HC4 sing N N 536 YRR "N4'" "C1'" sing N N 537 YRR "N4'" HN4 sing N N 538 YRR "C3'" "O3'" sing N N 539 YRR "C3'" "C2'" sing N N 540 YRR "C3'" HC3 sing N N 541 YRR "O3'" "HO3'" sing N N 542 YRR "C2'" "C1'" sing N N 543 YRR "C2'" HC21 sing N N 544 YRR "C2'" HC22 sing N N 545 YRR "C1'" HC11 sing N N 546 YRR "C1'" HC12 sing N N 547 YRR HO1 OP2 sing N N 548 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1BNK 'b-form double helix' 1BNK 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 12 1_555 -0.702 -0.488 0.245 1.715 -12.919 -0.512 1 D_DG1:DC25_E D 1 ? E 25 ? 19 1 1 A DA 2 1_555 B DT 11 1_555 0.129 0.053 -0.163 -4.617 -12.071 5.545 2 D_DA2:DT24_E D 2 ? E 24 ? 20 1 1 A DC 3 1_555 B DG 10 1_555 0.395 -0.256 -0.044 -7.054 -5.656 2.467 3 D_DC3:DG23_E D 3 ? E 23 ? 19 1 1 A DA 4 1_555 B DT 9 1_555 0.152 -0.210 0.128 1.311 -12.088 -0.272 4 D_DA4:DT22_E D 4 ? E 22 ? 20 1 1 A DT 5 1_555 B DA 8 1_555 0.207 -0.232 0.329 2.430 -3.037 1.807 5 D_DT5:DA21_E D 5 ? E 21 ? 20 1 1 A DG 6 1_555 B DC 7 1_555 -0.235 -0.248 0.237 7.743 9.092 -3.252 6 D_DG6:DC20_E D 6 ? E 20 ? 19 1 1 A DT 8 1_555 B DA 5 1_555 -0.095 -0.051 -0.088 -5.079 -14.308 -3.490 7 D_DT8:DA18_E D 8 ? E 18 ? 20 1 1 A DT 9 1_555 B DA 4 1_555 0.039 0.131 0.148 -3.524 -13.779 -0.957 8 D_DT9:DA17_E D 9 ? E 17 ? 20 1 1 A DG 10 1_555 B DC 3 1_555 0.349 -0.022 0.045 5.382 0.841 -1.495 9 D_DG10:DC16_E D 10 ? E 16 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.303 -0.442 0.161 2.670 -12.332 -4.081 10 D_DC11:DG15_E D 11 ? E 15 ? 19 1 1 A DC 12 1_555 B DG 1 1_555 0.351 -0.569 0.022 -6.280 -2.527 -3.586 11 D_DC12:DG14_E D 12 ? E 14 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 12 1_555 A DA 2 1_555 B DT 11 1_555 -0.058 0.425 3.495 -0.211 8.572 40.683 -0.386 0.058 3.511 12.167 0.299 41.539 1 DD_DG1DA2:DT24DC25_EE D 1 ? E 25 ? D 2 ? E 24 ? 1 A DA 2 1_555 B DT 11 1_555 A DC 3 1_555 B DG 10 1_555 0.355 -0.378 3.325 0.181 2.513 29.524 -1.277 -0.655 3.284 4.920 -0.353 29.628 2 DD_DA2DC3:DG23DT24_EE D 2 ? E 24 ? D 3 ? E 23 ? 1 A DC 3 1_555 B DG 10 1_555 A DA 4 1_555 B DT 9 1_555 0.202 0.364 3.152 2.061 7.170 36.736 -0.351 -0.051 3.171 11.234 -3.229 37.460 3 DD_DC3DA4:DT22DG23_EE D 3 ? E 23 ? D 4 ? E 22 ? 1 A DA 4 1_555 B DT 9 1_555 A DT 5 1_555 B DA 8 1_555 0.201 -0.466 3.297 1.524 6.544 28.033 -2.391 -0.065 3.116 13.269 -3.091 28.812 4 DD_DA4DT5:DA21DT22_EE D 4 ? E 22 ? D 5 ? E 21 ? 1 A DT 5 1_555 B DA 8 1_555 A DG 6 1_555 B DC 7 1_555 0.156 1.523 3.276 1.814 -7.512 42.952 2.746 -0.042 2.985 -10.160 -2.454 43.609 5 DD_DT5DG6:DC20DA21_EE D 5 ? E 21 ? D 6 ? E 20 ? 1 A DT 8 1_555 B DA 5 1_555 A DT 9 1_555 B DA 4 1_555 0.029 0.080 3.255 -3.730 4.629 31.543 -0.685 -0.721 3.209 8.421 6.786 32.085 6 DD_DT8DT9:DA17DA18_EE D 8 ? E 18 ? D 9 ? E 17 ? 1 A DT 9 1_555 B DA 4 1_555 A DG 10 1_555 B DC 3 1_555 1.055 0.557 3.192 0.774 -1.407 37.174 1.056 -1.553 3.190 -2.205 -1.214 37.207 7 DD_DT9DG10:DC16DA17_EE D 9 ? E 17 ? D 10 ? E 16 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -0.970 -0.068 3.364 -2.036 1.827 35.260 -0.390 1.285 3.406 3.010 3.356 35.363 8 DD_DG10DC11:DG15DC16_EE D 10 ? E 16 ? D 11 ? E 15 ? 1 A DC 11 1_555 B DG 2 1_555 A DC 12 1_555 B DG 1 1_555 -0.021 -0.808 3.535 -0.055 5.394 35.654 -2.119 0.026 3.381 8.747 0.088 36.046 9 DD_DC11DC12:DG14DG15_EE D 11 ? E 15 ? D 12 ? E 14 ? # _atom_sites.entry_id 1BNK _atom_sites.fract_transf_matrix[1][1] 0.022857 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017513 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007785 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_