data_1BPZ # _entry.id 1BPZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1BPZ pdb_00001bpz 10.2210/pdb1bpz/pdb RCSB PDE0124 ? ? WWPDB D_1000171993 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1BPX . unspecified PDB 1BPY . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1BPZ _pdbx_database_status.recvd_initial_deposition_date 1997-04-14 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sawaya, M.R.' 1 'Prasad, R.' 2 'Wilson, S.H.' 3 'Kraut, J.' 4 'Pelletier, H.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism.' Biochemistry 36 11205 11215 1997 BICHAW US 0006-2960 0033 ? 9287163 10.1021/bi9703812 1 'Characterization of the Metal Ion Binding Helix-Hairpin-Helix Motifs in Human DNA Polymerase Beta by X-Ray Structural Analysis' Biochemistry 35 12778 ? 1996 BICHAW US 0006-2960 0033 ? ? ? 2 'A Structural Basis for Metal Ion Mutagenicity and Nucleotide Selectivity in Human DNA Polymerase Beta' Biochemistry 35 12762 ? 1996 BICHAW US 0006-2960 0033 ? ? ? 3 ;Crystal Structures of Human DNA Polymerase Beta Complexed with DNA: Implications for Catalytic Mechanism, Processivity, and Fidelity ; Biochemistry 35 12742 ? 1996 BICHAW US 0006-2960 0033 ? ? ? 4 'Crystal Structure of Rat DNA Polymerase Beta: Evidence for a Common Polymerase Mechanism' Science 264 1930 ? 1994 SCIEAS US 0036-8075 0038 ? ? ? 5 'Structures of Ternary Complexes of Rat DNA Polymerase Beta, a DNA Template- Primer, and ddCTP' Science 264 1891 ? 1994 SCIEAS US 0036-8075 0038 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sawaya, M.R.' 1 ? primary 'Prasad, R.' 2 ? primary 'Wilson, S.H.' 3 ? primary 'Kraut, J.' 4 ? primary 'Pelletier, H.' 5 ? 1 'Pelletier, H.' 6 ? 1 'Sawaya, M.R.' 7 ? 2 'Pelletier, H.' 8 ? 2 'Sawaya, M.R.' 9 ? 2 'Wolfle, W.' 10 ? 2 'Wilson, S.H.' 11 ? 2 'Kraut, J.' 12 ? 3 'Pelletier, H.' 13 ? 3 'Sawaya, M.R.' 14 ? 3 'Wolfle, W.' 15 ? 3 'Wilson, S.H.' 16 ? 3 'Kraut, J.' 17 ? 4 'Sawaya, M.R.' 18 ? 4 'Pelletier, H.' 19 ? 4 'Kumar, A.' 20 ? 4 'Wilson, S.H.' 21 ? 4 'Kraut, J.' 22 ? 5 'Pelletier, H.' 23 ? 5 'Sawaya, M.R.' 24 ? 5 'Kumar, A.' 25 ? 5 'Wilson, S.H.' 26 ? 5 'Kraut, J.' 27 ? # _cell.entry_id 1BPZ _cell.length_a 53.535 _cell.length_b 78.656 _cell.length_c 54.618 _cell.angle_alpha 90.00 _cell.angle_beta 107.54 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BPZ _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*GP*AP*CP*CP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') ; 4813.134 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*G)-3') ; 3405.220 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*GP*TP*CP*GP*G)-3') ; 1536.035 1 ? ? ? ? 4 polymer man 'PROTEIN (DNA POLYMERASE BETA)' 38241.672 1 2.7.7.7 ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 6 water nat water 18.015 27 ? ? ? ? # _entity_name_com.entity_id 4 _entity_name_com.name 'POL BETA, BETA-POL' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DG)(DA)(DC)(DC)(DA)(DC)(DG)(DC)(DA)(DT)(DC)(DA)(DG)(DC)' CCGACCACGCATCAGC T ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DT)(DG)(DA)(DT)(DG)(DC)(DG)(DT)(DG)' GCTGATGCGTG P ? 3 polydeoxyribonucleotide no no '(DG)(DT)(DC)(DG)(DG)' GTCGG D ? 4 'polypeptide(L)' no no ;MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE ; ;MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DA n 1 5 DC n 1 6 DC n 1 7 DA n 1 8 DC n 1 9 DG n 1 10 DC n 1 11 DA n 1 12 DT n 1 13 DC n 1 14 DA n 1 15 DG n 1 16 DC n 2 1 DG n 2 2 DC n 2 3 DT n 2 4 DG n 2 5 DA n 2 6 DT n 2 7 DG n 2 8 DC n 2 9 DG n 2 10 DT n 2 11 DG n 3 1 DG n 3 2 DT n 3 3 DC n 3 4 DG n 3 5 DG n 4 1 MET n 4 2 SER n 4 3 LYS n 4 4 ARG n 4 5 LYS n 4 6 ALA n 4 7 PRO n 4 8 GLN n 4 9 GLU n 4 10 THR n 4 11 LEU n 4 12 ASN n 4 13 GLY n 4 14 GLY n 4 15 ILE n 4 16 THR n 4 17 ASP n 4 18 MET n 4 19 LEU n 4 20 THR n 4 21 GLU n 4 22 LEU n 4 23 ALA n 4 24 ASN n 4 25 PHE n 4 26 GLU n 4 27 LYS n 4 28 ASN n 4 29 VAL n 4 30 SER n 4 31 GLN n 4 32 ALA n 4 33 ILE n 4 34 HIS n 4 35 LYS n 4 36 TYR n 4 37 ASN n 4 38 ALA n 4 39 TYR n 4 40 ARG n 4 41 LYS n 4 42 ALA n 4 43 ALA n 4 44 SER n 4 45 VAL n 4 46 ILE n 4 47 ALA n 4 48 LYS n 4 49 TYR n 4 50 PRO n 4 51 HIS n 4 52 LYS n 4 53 ILE n 4 54 LYS n 4 55 SER n 4 56 GLY n 4 57 ALA n 4 58 GLU n 4 59 ALA n 4 60 LYS n 4 61 LYS n 4 62 LEU n 4 63 PRO n 4 64 GLY n 4 65 VAL n 4 66 GLY n 4 67 THR n 4 68 LYS n 4 69 ILE n 4 70 ALA n 4 71 GLU n 4 72 LYS n 4 73 ILE n 4 74 ASP n 4 75 GLU n 4 76 PHE n 4 77 LEU n 4 78 ALA n 4 79 THR n 4 80 GLY n 4 81 LYS n 4 82 LEU n 4 83 ARG n 4 84 LYS n 4 85 LEU n 4 86 GLU n 4 87 LYS n 4 88 ILE n 4 89 ARG n 4 90 GLN n 4 91 ASP n 4 92 ASP n 4 93 THR n 4 94 SER n 4 95 SER n 4 96 SER n 4 97 ILE n 4 98 ASN n 4 99 PHE n 4 100 LEU n 4 101 THR n 4 102 ARG n 4 103 VAL n 4 104 SER n 4 105 GLY n 4 106 ILE n 4 107 GLY n 4 108 PRO n 4 109 SER n 4 110 ALA n 4 111 ALA n 4 112 ARG n 4 113 LYS n 4 114 PHE n 4 115 VAL n 4 116 ASP n 4 117 GLU n 4 118 GLY n 4 119 ILE n 4 120 LYS n 4 121 THR n 4 122 LEU n 4 123 GLU n 4 124 ASP n 4 125 LEU n 4 126 ARG n 4 127 LYS n 4 128 ASN n 4 129 GLU n 4 130 ASP n 4 131 LYS n 4 132 LEU n 4 133 ASN n 4 134 HIS n 4 135 HIS n 4 136 GLN n 4 137 ARG n 4 138 ILE n 4 139 GLY n 4 140 LEU n 4 141 LYS n 4 142 TYR n 4 143 PHE n 4 144 GLY n 4 145 ASP n 4 146 PHE n 4 147 GLU n 4 148 LYS n 4 149 ARG n 4 150 ILE n 4 151 PRO n 4 152 ARG n 4 153 GLU n 4 154 GLU n 4 155 MET n 4 156 LEU n 4 157 GLN n 4 158 MET n 4 159 GLN n 4 160 ASP n 4 161 ILE n 4 162 VAL n 4 163 LEU n 4 164 ASN n 4 165 GLU n 4 166 VAL n 4 167 LYS n 4 168 LYS n 4 169 VAL n 4 170 ASP n 4 171 SER n 4 172 GLU n 4 173 TYR n 4 174 ILE n 4 175 ALA n 4 176 THR n 4 177 VAL n 4 178 CYS n 4 179 GLY n 4 180 SER n 4 181 PHE n 4 182 ARG n 4 183 ARG n 4 184 GLY n 4 185 ALA n 4 186 GLU n 4 187 SER n 4 188 SER n 4 189 GLY n 4 190 ASP n 4 191 MET n 4 192 ASP n 4 193 VAL n 4 194 LEU n 4 195 LEU n 4 196 THR n 4 197 HIS n 4 198 PRO n 4 199 SER n 4 200 PHE n 4 201 THR n 4 202 SER n 4 203 GLU n 4 204 SER n 4 205 THR n 4 206 LYS n 4 207 GLN n 4 208 PRO n 4 209 LYS n 4 210 LEU n 4 211 LEU n 4 212 HIS n 4 213 GLN n 4 214 VAL n 4 215 VAL n 4 216 GLU n 4 217 GLN n 4 218 LEU n 4 219 GLN n 4 220 LYS n 4 221 VAL n 4 222 HIS n 4 223 PHE n 4 224 ILE n 4 225 THR n 4 226 ASP n 4 227 THR n 4 228 LEU n 4 229 SER n 4 230 LYS n 4 231 GLY n 4 232 GLU n 4 233 THR n 4 234 LYS n 4 235 PHE n 4 236 MET n 4 237 GLY n 4 238 VAL n 4 239 CYS n 4 240 GLN n 4 241 LEU n 4 242 PRO n 4 243 SER n 4 244 LYS n 4 245 ASN n 4 246 ASP n 4 247 GLU n 4 248 LYS n 4 249 GLU n 4 250 TYR n 4 251 PRO n 4 252 HIS n 4 253 ARG n 4 254 ARG n 4 255 ILE n 4 256 ASP n 4 257 ILE n 4 258 ARG n 4 259 LEU n 4 260 ILE n 4 261 PRO n 4 262 LYS n 4 263 ASP n 4 264 GLN n 4 265 TYR n 4 266 TYR n 4 267 CYS n 4 268 GLY n 4 269 VAL n 4 270 LEU n 4 271 TYR n 4 272 PHE n 4 273 THR n 4 274 GLY n 4 275 SER n 4 276 ASP n 4 277 ILE n 4 278 PHE n 4 279 ASN n 4 280 LYS n 4 281 ASN n 4 282 MET n 4 283 ARG n 4 284 ALA n 4 285 HIS n 4 286 ALA n 4 287 LEU n 4 288 GLU n 4 289 LYS n 4 290 GLY n 4 291 PHE n 4 292 THR n 4 293 ILE n 4 294 ASN n 4 295 GLU n 4 296 TYR n 4 297 THR n 4 298 ILE n 4 299 ARG n 4 300 PRO n 4 301 LEU n 4 302 GLY n 4 303 VAL n 4 304 THR n 4 305 GLY n 4 306 VAL n 4 307 ALA n 4 308 GLY n 4 309 GLU n 4 310 PRO n 4 311 LEU n 4 312 PRO n 4 313 VAL n 4 314 ASP n 4 315 SER n 4 316 GLU n 4 317 LYS n 4 318 ASP n 4 319 ILE n 4 320 PHE n 4 321 ASP n 4 322 TYR n 4 323 ILE n 4 324 GLN n 4 325 TRP n 4 326 LYS n 4 327 TYR n 4 328 ARG n 4 329 GLU n 4 330 PRO n 4 331 LYS n 4 332 ASP n 4 333 ARG n 4 334 SER n 4 335 GLU n # _entity_src_gen.entity_id 4 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location NUCLEUS _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP DPOB_HUMAN P06746 4 1 ? ? 2 PDB 1BPZ 1BPZ 1 ? ? ? 3 PDB 1BPZ 1BPZ 2 ? ? ? 4 PDB 1BPZ 1BPZ 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1BPZ A 2 ? 335 ? P06746 1 ? 334 ? 2 335 2 2 1BPZ T 1 ? 16 ? 1BPZ 1 ? 16 ? 1 16 3 3 1BPZ P 1 ? 11 ? 1BPZ 1 ? 11 ? 1 11 4 4 1BPZ D 1 ? 5 ? 1BPZ 1 ? 5 ? 1 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1BPZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.10 _exptl_crystal.density_percent_sol 41.4000 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;PROTEIN-DNA COMPLEX WAS CRYSTALLIZED USING A RESERVOIR CONTAINING 17.5% PEG 3350, 90 MM SODIUM ACETATE, AND 50 MM IMIDAZOLE, PH 7.0., VAPOR DIFFUSION ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1996-11-15 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111) CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL7-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1BPZ _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F 0.000 _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 2.600 _reflns.number_obs 14702 _reflns.number_all ? _reflns.percent_possible_obs 94.000 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.073 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.900 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.600 _reflns_shell.d_res_low 2.690 _reflns_shell.percent_possible_all 95.60 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.344 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1BPZ _refine.ls_number_reflns_obs 14702 _refine.ls_number_reflns_all 14702 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.000 _refine.ls_d_res_high 2.600 _refine.ls_percent_reflns_obs 94.000 _refine.ls_R_factor_obs 0.243 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details MOEWS _refine.solvent_model_param_ksol 0.714 _refine.solvent_model_param_bsol 88.70 _refine.pdbx_ls_cross_valid_method ? _refine.details ;THE ENTIRE THUMB SUBDOMAIN (RESIDUES 261 - 335) IS MODELED WITH ONLY 0.5 OCCUPANCY DUE TO WEAK ELECTRON DENSITY. THERE IS NO OTHER PATTERN OF DENSITY WARRANTING A SECOND POSITION FOR THE THUMB SUBDOMAIN. ; _refine.pdbx_starting_model 'PDB ENTRY 9ICJ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'TNT PROTGEO' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2653 _refine_hist.pdbx_number_atoms_nucleic_acid 651 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 27 _refine_hist.number_atoms_total 3333 _refine_hist.d_res_high 2.600 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.020 ? 0.550 3474 'X-RAY DIFFRACTION' ? t_angle_deg 3.000 ? 1.000 4754 'X-RAY DIFFRACTION' ? t_dihedral_angle_d 22.20 ? 1.000 2027 'X-RAY DIFFRACTION' ? t_incorr_chiral_ct 0 ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes 0.013 ? 1.000 74 'X-RAY DIFFRACTION' ? t_gen_planes 0.007 ? 10.00 432 'X-RAY DIFFRACTION' ? t_it 7.000 ? 0.025 3474 'X-RAY DIFFRACTION' ? t_nbd 0.022 ? 10.00 270 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1BPZ _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.243 _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 1BPZ _struct.title 'HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1BPZ _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text 'NUCLEOTIDYLTRANSFERASE, DNA REPAIR, BASE EXCISION REPAIR PATHWAY, TRANSFERASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 6 ? H N N 6 ? I N N 6 ? J N N 6 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 A GLY D 13 ? SER D 30 ? GLY A 13 SER A 30 1 ? 18 HELX_P HELX_P2 B ILE D 33 ? LYS D 48 ? ILE A 33 LYS A 48 1 ? 16 HELX_P HELX_P3 C GLY D 56 ? LYS D 61 ? GLY A 56 LYS A 61 1 ? 6 HELX_P HELX_P4 D THR D 67 ? THR D 79 ? THR A 67 THR A 79 1 'SEE REMARK 650' 13 HELX_P HELX_P5 E ARG D 83 ? GLN D 90 ? ARG A 83 GLN A 90 1 ? 8 HELX_P HELX_P6 F ASP D 92 ? ARG D 102 ? ASP A 92 ARG A 102 1 ? 11 HELX_P HELX_P7 G PRO D 108 ? ASP D 116 ? PRO A 108 ASP A 116 1 'SEE REMARK 650' 9 HELX_P HELX_P8 H LEU D 122 ? LYS D 127 ? LEU A 122 LYS A 127 1 ? 6 HELX_P HELX_P9 I HIS D 134 ? GLU D 147 ? HIS A 134 GLU A 147 1 ? 14 HELX_P HELX_P10 J ARG D 152 ? VAL D 169 ? ARG A 152 VAL A 169 1 ? 18 HELX_P HELX_P11 K SER D 180 ? ARG D 183 ? SER A 180 ARG A 183 1 ? 4 HELX_P HELX_P12 L PRO D 208 ? LYS D 220 ? PRO A 208 LYS A 220 1 ? 13 HELX_P HELX_P13 M LYS D 262 ? THR D 273 ? LYS A 262 THR A 273 1 ? 12 HELX_P HELX_P14 N ASP D 276 ? GLU D 288 ? ASP A 276 GLU A 288 1 ? 13 HELX_P HELX_P15 O GLU D 316 ? ILE D 323 ? GLU A 316 ILE A 323 1 ? 8 HELX_P HELX_P16 P PRO D 330 ? ASP D 332 ? PRO A 330 ASP A 332 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B DG 9 OP1 ? ? ? 1_555 E NA . NA ? ? P DG 9 A NA 341 1_555 ? ? ? ? ? ? ? 2.434 ? ? metalc2 metalc ? ? C DC 3 OP1 ? ? ? 1_555 F NA . NA ? ? D DC 3 A NA 342 1_555 ? ? ? ? ? ? ? 2.936 ? ? metalc3 metalc ? ? D LYS 60 O ? ? ? 1_555 F NA . NA ? ? A LYS 60 A NA 342 1_555 ? ? ? ? ? ? ? 2.276 ? ? metalc4 metalc ? ? D LEU 62 O ? ? ? 1_555 F NA . NA ? ? A LEU 62 A NA 342 1_555 ? ? ? ? ? ? ? 2.231 ? ? metalc5 metalc ? ? D VAL 65 O ? ? ? 1_555 F NA . NA ? ? A VAL 65 A NA 342 1_555 ? ? ? ? ? ? ? 2.461 ? ? metalc6 metalc ? ? D THR 101 O ? ? ? 1_555 E NA . NA ? ? A THR 101 A NA 341 1_555 ? ? ? ? ? ? ? 2.215 ? ? metalc7 metalc ? ? D VAL 103 O ? ? ? 1_555 E NA . NA ? ? A VAL 103 A NA 341 1_555 ? ? ? ? ? ? ? 2.724 ? ? metalc8 metalc ? ? D ILE 106 O ? ? ? 1_555 E NA . NA ? ? A ILE 106 A NA 341 1_555 ? ? ? ? ? ? ? 2.094 ? ? metalc9 metalc ? ? E NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 341 A HOH 500 1_555 ? ? ? ? ? ? ? 2.193 ? ? metalc10 metalc ? ? F NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 342 A HOH 502 1_555 ? ? ? ? ? ? ? 2.103 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 C DG 5 N1 ? ? T DC 1 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 C DG 5 O6 ? ? T DC 1 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 C DG 5 N2 ? ? T DC 1 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 C DG 4 N1 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 C DG 4 O6 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 C DG 4 N2 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 C DC 3 N3 ? ? T DG 3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 C DC 3 O2 ? ? T DG 3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 C DC 3 N4 ? ? T DG 3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 C DT 2 N3 ? ? T DA 4 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 C DT 2 O4 ? ? T DA 4 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 C DG 1 N1 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 C DG 1 O6 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 C DG 1 N2 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 11 N1 ? ? T DC 6 P DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 11 O6 ? ? T DC 6 P DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 11 N2 ? ? T DC 6 P DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 10 N3 ? ? T DA 7 P DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 10 O4 ? ? T DA 7 P DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 9 N1 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 9 O6 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 9 N2 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 8 N3 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 8 O2 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 8 N4 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 7 N1 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 7 O6 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 7 N2 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 6 N3 ? ? T DA 11 P DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 6 O4 ? ? T DA 11 P DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 5 N1 ? ? T DT 12 P DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 5 N6 ? ? T DT 12 P DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 4 N1 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 4 O6 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 4 N2 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DA 14 N1 ? ? ? 1_555 B DT 3 N3 ? ? T DA 14 P DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DA 14 N6 ? ? ? 1_555 B DT 3 O4 ? ? T DA 14 P DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DG 15 N1 ? ? ? 1_555 B DC 2 N3 ? ? T DG 15 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DG 15 N2 ? ? ? 1_555 B DC 2 O2 ? ? T DG 15 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DG 15 O6 ? ? ? 1_555 B DC 2 N4 ? ? T DG 15 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 1 N1 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 1 O6 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 1 N2 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 274 _struct_mon_prot_cis.label_asym_id D _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 274 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 SER _struct_mon_prot_cis.pdbx_label_seq_id_2 275 _struct_mon_prot_cis.pdbx_label_asym_id_2 D _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 SER _struct_mon_prot_cis.pdbx_auth_seq_id_2 275 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.48 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details S1 ? 2 ? S2 ? 5 ? S3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense S1 1 2 ? anti-parallel S2 1 2 ? anti-parallel S2 2 3 ? parallel S2 3 4 ? anti-parallel S2 4 5 ? anti-parallel S3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id S1 1 ILE D 150 ? PRO D 151 ? ILE A 150 PRO A 151 S1 2 SER D 187 ? SER D 188 ? SER A 187 SER A 188 S2 1 ILE D 174 ? CYS D 178 ? ILE A 174 CYS A 178 S2 2 MET D 191 ? THR D 196 ? MET A 191 THR A 196 S2 3 ARG D 253 ? ARG D 258 ? ARG A 253 ARG A 258 S2 4 LYS D 234 ? CYS D 239 ? LYS A 234 CYS A 239 S2 5 SER D 229 ? GLY D 231 ? SER A 229 GLY A 231 S3 1 PHE D 291 ? ASN D 294 ? PHE A 291 ASN A 294 S3 2 THR D 297 ? PRO D 300 ? THR A 297 PRO A 300 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id S1 1 2 O ILE D 150 ? O ILE A 150 N SER D 188 ? N SER A 188 S2 1 2 O ILE D 174 ? O ILE A 174 N THR D 196 ? N THR A 196 S2 2 3 O MET D 191 ? O MET A 191 N ASP D 256 ? N ASP A 256 S2 3 4 O ARG D 253 ? O ARG A 253 N CYS D 239 ? N CYS A 239 S2 4 5 N MET D 236 ? N MET A 236 O SER D 229 ? O SER A 229 S3 1 2 O THR D 292 ? O THR A 292 N ARG D 299 ? N ARG A 299 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details ACT Unknown ? ? ? ? 3 ? AC1 Software A NA 341 ? 5 'BINDING SITE FOR RESIDUE NA A 341' AC2 Software A NA 342 ? 5 'BINDING SITE FOR RESIDUE NA A 342' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 ACT 3 ASP D 190 ? ASP A 190 . ? 1_555 ? 2 ACT 3 ASP D 192 ? ASP A 192 . ? 1_555 ? 3 ACT 3 ASP D 256 ? ASP A 256 . ? 1_555 ? 4 AC1 5 THR D 101 ? THR A 101 . ? 1_555 ? 5 AC1 5 VAL D 103 ? VAL A 103 . ? 1_555 ? 6 AC1 5 ILE D 106 ? ILE A 106 . ? 1_555 ? 7 AC1 5 HOH J . ? HOH A 500 . ? 1_555 ? 8 AC1 5 DG B 9 ? DG P 9 . ? 1_555 ? 9 AC2 5 LYS D 60 ? LYS A 60 . ? 1_555 ? 10 AC2 5 LEU D 62 ? LEU A 62 . ? 1_555 ? 11 AC2 5 VAL D 65 ? VAL A 65 . ? 1_555 ? 12 AC2 5 HOH J . ? HOH A 502 . ? 1_555 ? 13 AC2 5 DC C 3 ? DC D 3 . ? 1_555 ? # _database_PDB_matrix.entry_id 1BPZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1BPZ _atom_sites.fract_transf_matrix[1][1] 0.018679 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005904 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012714 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019202 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C T . n A 1 2 DC 2 2 2 DC C T . n A 1 3 DG 3 3 3 DG G T . n A 1 4 DA 4 4 4 DA A T . n A 1 5 DC 5 5 5 DC C T . n A 1 6 DC 6 6 6 DC C T . n A 1 7 DA 7 7 7 DA A T . n A 1 8 DC 8 8 8 DC C T . n A 1 9 DG 9 9 9 DG G T . n A 1 10 DC 10 10 10 DC C T . n A 1 11 DA 11 11 11 DA A T . n A 1 12 DT 12 12 12 DT T T . n A 1 13 DC 13 13 13 DC C T . n A 1 14 DA 14 14 14 DA A T . n A 1 15 DG 15 15 15 DG G T . n A 1 16 DC 16 16 16 DC C T . n B 2 1 DG 1 1 1 DG G P . n B 2 2 DC 2 2 2 DC C P . n B 2 3 DT 3 3 3 DT T P . n B 2 4 DG 4 4 4 DG G P . n B 2 5 DA 5 5 5 DA A P . n B 2 6 DT 6 6 6 DT T P . n B 2 7 DG 7 7 7 DG G P . n B 2 8 DC 8 8 8 DC C P . n B 2 9 DG 9 9 9 DG G P . n B 2 10 DT 10 10 10 DT T P . n B 2 11 DG 11 11 11 DG G P . n C 3 1 DG 1 1 1 DG G D . n C 3 2 DT 2 2 2 DT T D . n C 3 3 DC 3 3 3 DC C D . n C 3 4 DG 4 4 4 DG G D . n C 3 5 DG 5 5 5 DG G D . n D 4 1 MET 1 1 ? ? ? A . n D 4 2 SER 2 2 ? ? ? A . n D 4 3 LYS 3 3 ? ? ? A . n D 4 4 ARG 4 4 ? ? ? A . n D 4 5 LYS 5 5 5 LYS LYS A . n D 4 6 ALA 6 6 6 ALA ALA A . n D 4 7 PRO 7 7 7 PRO PRO A . n D 4 8 GLN 8 8 8 GLN GLN A . n D 4 9 GLU 9 9 9 GLU GLU A . n D 4 10 THR 10 10 10 THR THR A . n D 4 11 LEU 11 11 11 LEU LEU A . n D 4 12 ASN 12 12 12 ASN ASN A . n D 4 13 GLY 13 13 13 GLY GLY A . n D 4 14 GLY 14 14 14 GLY GLY A . n D 4 15 ILE 15 15 15 ILE ILE A . n D 4 16 THR 16 16 16 THR THR A . n D 4 17 ASP 17 17 17 ASP ASP A . n D 4 18 MET 18 18 18 MET MET A . n D 4 19 LEU 19 19 19 LEU LEU A . n D 4 20 THR 20 20 20 THR THR A . n D 4 21 GLU 21 21 21 GLU GLU A . n D 4 22 LEU 22 22 22 LEU LEU A . n D 4 23 ALA 23 23 23 ALA ALA A . n D 4 24 ASN 24 24 24 ASN ASN A . n D 4 25 PHE 25 25 25 PHE PHE A . n D 4 26 GLU 26 26 26 GLU GLU A . n D 4 27 LYS 27 27 27 LYS LYS A . n D 4 28 ASN 28 28 28 ASN ASN A . n D 4 29 VAL 29 29 29 VAL VAL A . n D 4 30 SER 30 30 30 SER SER A . n D 4 31 GLN 31 31 31 GLN GLN A . n D 4 32 ALA 32 32 32 ALA ALA A . n D 4 33 ILE 33 33 33 ILE ILE A . n D 4 34 HIS 34 34 34 HIS HIS A . n D 4 35 LYS 35 35 35 LYS LYS A . n D 4 36 TYR 36 36 36 TYR TYR A . n D 4 37 ASN 37 37 37 ASN ASN A . n D 4 38 ALA 38 38 38 ALA ALA A . n D 4 39 TYR 39 39 39 TYR TYR A . n D 4 40 ARG 40 40 40 ARG ARG A . n D 4 41 LYS 41 41 41 LYS LYS A . n D 4 42 ALA 42 42 42 ALA ALA A . n D 4 43 ALA 43 43 43 ALA ALA A . n D 4 44 SER 44 44 44 SER SER A . n D 4 45 VAL 45 45 45 VAL VAL A . n D 4 46 ILE 46 46 46 ILE ILE A . n D 4 47 ALA 47 47 47 ALA ALA A . n D 4 48 LYS 48 48 48 LYS LYS A . n D 4 49 TYR 49 49 49 TYR TYR A . n D 4 50 PRO 50 50 50 PRO PRO A . n D 4 51 HIS 51 51 51 HIS HIS A . n D 4 52 LYS 52 52 52 LYS LYS A . n D 4 53 ILE 53 53 53 ILE ILE A . n D 4 54 LYS 54 54 54 LYS LYS A . n D 4 55 SER 55 55 55 SER SER A . n D 4 56 GLY 56 56 56 GLY GLY A . n D 4 57 ALA 57 57 57 ALA ALA A . n D 4 58 GLU 58 58 58 GLU GLU A . n D 4 59 ALA 59 59 59 ALA ALA A . n D 4 60 LYS 60 60 60 LYS LYS A . n D 4 61 LYS 61 61 61 LYS LYS A . n D 4 62 LEU 62 62 62 LEU LEU A . n D 4 63 PRO 63 63 63 PRO PRO A . n D 4 64 GLY 64 64 64 GLY GLY A . n D 4 65 VAL 65 65 65 VAL VAL A . n D 4 66 GLY 66 66 66 GLY GLY A . n D 4 67 THR 67 67 67 THR THR A . n D 4 68 LYS 68 68 68 LYS LYS A . n D 4 69 ILE 69 69 69 ILE ILE A . n D 4 70 ALA 70 70 70 ALA ALA A . n D 4 71 GLU 71 71 71 GLU GLU A . n D 4 72 LYS 72 72 72 LYS LYS A . n D 4 73 ILE 73 73 73 ILE ILE A . n D 4 74 ASP 74 74 74 ASP ASP A . n D 4 75 GLU 75 75 75 GLU GLU A . n D 4 76 PHE 76 76 76 PHE PHE A . n D 4 77 LEU 77 77 77 LEU LEU A . n D 4 78 ALA 78 78 78 ALA ALA A . n D 4 79 THR 79 79 79 THR THR A . n D 4 80 GLY 80 80 80 GLY GLY A . n D 4 81 LYS 81 81 81 LYS LYS A . n D 4 82 LEU 82 82 82 LEU LEU A . n D 4 83 ARG 83 83 83 ARG ARG A . n D 4 84 LYS 84 84 84 LYS LYS A . n D 4 85 LEU 85 85 85 LEU LEU A . n D 4 86 GLU 86 86 86 GLU GLU A . n D 4 87 LYS 87 87 87 LYS LYS A . n D 4 88 ILE 88 88 88 ILE ILE A . n D 4 89 ARG 89 89 89 ARG ARG A . n D 4 90 GLN 90 90 90 GLN GLN A . n D 4 91 ASP 91 91 91 ASP ASP A . n D 4 92 ASP 92 92 92 ASP ASP A . n D 4 93 THR 93 93 93 THR THR A . n D 4 94 SER 94 94 94 SER SER A . n D 4 95 SER 95 95 95 SER SER A . n D 4 96 SER 96 96 96 SER SER A . n D 4 97 ILE 97 97 97 ILE ILE A . n D 4 98 ASN 98 98 98 ASN ASN A . n D 4 99 PHE 99 99 99 PHE PHE A . n D 4 100 LEU 100 100 100 LEU LEU A . n D 4 101 THR 101 101 101 THR THR A . n D 4 102 ARG 102 102 102 ARG ARG A . n D 4 103 VAL 103 103 103 VAL VAL A . n D 4 104 SER 104 104 104 SER SER A . n D 4 105 GLY 105 105 105 GLY GLY A . n D 4 106 ILE 106 106 106 ILE ILE A . n D 4 107 GLY 107 107 107 GLY GLY A . n D 4 108 PRO 108 108 108 PRO PRO A . n D 4 109 SER 109 109 109 SER SER A . n D 4 110 ALA 110 110 110 ALA ALA A . n D 4 111 ALA 111 111 111 ALA ALA A . n D 4 112 ARG 112 112 112 ARG ARG A . n D 4 113 LYS 113 113 113 LYS LYS A . n D 4 114 PHE 114 114 114 PHE PHE A . n D 4 115 VAL 115 115 115 VAL VAL A . n D 4 116 ASP 116 116 116 ASP ASP A . n D 4 117 GLU 117 117 117 GLU GLU A . n D 4 118 GLY 118 118 118 GLY GLY A . n D 4 119 ILE 119 119 119 ILE ILE A . n D 4 120 LYS 120 120 120 LYS LYS A . n D 4 121 THR 121 121 121 THR THR A . n D 4 122 LEU 122 122 122 LEU LEU A . n D 4 123 GLU 123 123 123 GLU GLU A . n D 4 124 ASP 124 124 124 ASP ASP A . n D 4 125 LEU 125 125 125 LEU LEU A . n D 4 126 ARG 126 126 126 ARG ARG A . n D 4 127 LYS 127 127 127 LYS LYS A . n D 4 128 ASN 128 128 128 ASN ASN A . n D 4 129 GLU 129 129 129 GLU GLU A . n D 4 130 ASP 130 130 130 ASP ASP A . n D 4 131 LYS 131 131 131 LYS LYS A . n D 4 132 LEU 132 132 132 LEU LEU A . n D 4 133 ASN 133 133 133 ASN ASN A . n D 4 134 HIS 134 134 134 HIS HIS A . n D 4 135 HIS 135 135 135 HIS HIS A . n D 4 136 GLN 136 136 136 GLN GLN A . n D 4 137 ARG 137 137 137 ARG ARG A . n D 4 138 ILE 138 138 138 ILE ILE A . n D 4 139 GLY 139 139 139 GLY GLY A . n D 4 140 LEU 140 140 140 LEU LEU A . n D 4 141 LYS 141 141 141 LYS LYS A . n D 4 142 TYR 142 142 142 TYR TYR A . n D 4 143 PHE 143 143 143 PHE PHE A . n D 4 144 GLY 144 144 144 GLY GLY A . n D 4 145 ASP 145 145 145 ASP ASP A . n D 4 146 PHE 146 146 146 PHE PHE A . n D 4 147 GLU 147 147 147 GLU GLU A . n D 4 148 LYS 148 148 148 LYS LYS A . n D 4 149 ARG 149 149 149 ARG ARG A . n D 4 150 ILE 150 150 150 ILE ILE A . n D 4 151 PRO 151 151 151 PRO PRO A . n D 4 152 ARG 152 152 152 ARG ARG A . n D 4 153 GLU 153 153 153 GLU GLU A . n D 4 154 GLU 154 154 154 GLU GLU A . n D 4 155 MET 155 155 155 MET MET A . n D 4 156 LEU 156 156 156 LEU LEU A . n D 4 157 GLN 157 157 157 GLN GLN A . n D 4 158 MET 158 158 158 MET MET A . n D 4 159 GLN 159 159 159 GLN GLN A . n D 4 160 ASP 160 160 160 ASP ASP A . n D 4 161 ILE 161 161 161 ILE ILE A . n D 4 162 VAL 162 162 162 VAL VAL A . n D 4 163 LEU 163 163 163 LEU LEU A . n D 4 164 ASN 164 164 164 ASN ASN A . n D 4 165 GLU 165 165 165 GLU GLU A . n D 4 166 VAL 166 166 166 VAL VAL A . n D 4 167 LYS 167 167 167 LYS LYS A . n D 4 168 LYS 168 168 168 LYS LYS A . n D 4 169 VAL 169 169 169 VAL VAL A . n D 4 170 ASP 170 170 170 ASP ASP A . n D 4 171 SER 171 171 171 SER SER A . n D 4 172 GLU 172 172 172 GLU GLU A . n D 4 173 TYR 173 173 173 TYR TYR A . n D 4 174 ILE 174 174 174 ILE ILE A . n D 4 175 ALA 175 175 175 ALA ALA A . n D 4 176 THR 176 176 176 THR THR A . n D 4 177 VAL 177 177 177 VAL VAL A . n D 4 178 CYS 178 178 178 CYS CYS A . n D 4 179 GLY 179 179 179 GLY GLY A . n D 4 180 SER 180 180 180 SER SER A . n D 4 181 PHE 181 181 181 PHE PHE A . n D 4 182 ARG 182 182 182 ARG ARG A . n D 4 183 ARG 183 183 183 ARG ARG A . n D 4 184 GLY 184 184 184 GLY GLY A . n D 4 185 ALA 185 185 185 ALA ALA A . n D 4 186 GLU 186 186 186 GLU GLU A . n D 4 187 SER 187 187 187 SER SER A . n D 4 188 SER 188 188 188 SER SER A . n D 4 189 GLY 189 189 189 GLY GLY A . n D 4 190 ASP 190 190 190 ASP ASP A . n D 4 191 MET 191 191 191 MET MET A . n D 4 192 ASP 192 192 192 ASP ASP A . n D 4 193 VAL 193 193 193 VAL VAL A . n D 4 194 LEU 194 194 194 LEU LEU A . n D 4 195 LEU 195 195 195 LEU LEU A . n D 4 196 THR 196 196 196 THR THR A . n D 4 197 HIS 197 197 197 HIS HIS A . n D 4 198 PRO 198 198 198 PRO PRO A . n D 4 199 SER 199 199 199 SER SER A . n D 4 200 PHE 200 200 200 PHE PHE A . n D 4 201 THR 201 201 201 THR THR A . n D 4 202 SER 202 202 202 SER SER A . n D 4 203 GLU 203 203 203 GLU GLU A . n D 4 204 SER 204 204 204 SER SER A . n D 4 205 THR 205 205 205 THR THR A . n D 4 206 LYS 206 206 206 LYS LYS A . n D 4 207 GLN 207 207 207 GLN GLN A . n D 4 208 PRO 208 208 208 PRO PRO A . n D 4 209 LYS 209 209 209 LYS LYS A . n D 4 210 LEU 210 210 210 LEU LEU A . n D 4 211 LEU 211 211 211 LEU LEU A . n D 4 212 HIS 212 212 212 HIS HIS A . n D 4 213 GLN 213 213 213 GLN GLN A . n D 4 214 VAL 214 214 214 VAL VAL A . n D 4 215 VAL 215 215 215 VAL VAL A . n D 4 216 GLU 216 216 216 GLU GLU A . n D 4 217 GLN 217 217 217 GLN GLN A . n D 4 218 LEU 218 218 218 LEU LEU A . n D 4 219 GLN 219 219 219 GLN GLN A . n D 4 220 LYS 220 220 220 LYS LYS A . n D 4 221 VAL 221 221 221 VAL VAL A . n D 4 222 HIS 222 222 222 HIS HIS A . n D 4 223 PHE 223 223 223 PHE PHE A . n D 4 224 ILE 224 224 224 ILE ILE A . n D 4 225 THR 225 225 225 THR THR A . n D 4 226 ASP 226 226 226 ASP ASP A . n D 4 227 THR 227 227 227 THR THR A . n D 4 228 LEU 228 228 228 LEU LEU A . n D 4 229 SER 229 229 229 SER SER A . n D 4 230 LYS 230 230 230 LYS LYS A . n D 4 231 GLY 231 231 231 GLY GLY A . n D 4 232 GLU 232 232 232 GLU GLU A . n D 4 233 THR 233 233 233 THR THR A . n D 4 234 LYS 234 234 234 LYS LYS A . n D 4 235 PHE 235 235 235 PHE PHE A . n D 4 236 MET 236 236 236 MET MET A . n D 4 237 GLY 237 237 237 GLY GLY A . n D 4 238 VAL 238 238 238 VAL VAL A . n D 4 239 CYS 239 239 239 CYS CYS A . n D 4 240 GLN 240 240 240 GLN GLN A . n D 4 241 LEU 241 241 241 LEU LEU A . n D 4 242 PRO 242 242 242 PRO PRO A . n D 4 243 SER 243 243 243 SER SER A . n D 4 244 LYS 244 244 244 LYS LYS A . n D 4 245 ASN 245 245 245 ASN ASN A . n D 4 246 ASP 246 246 246 ASP ASP A . n D 4 247 GLU 247 247 247 GLU GLU A . n D 4 248 LYS 248 248 248 LYS LYS A . n D 4 249 GLU 249 249 249 GLU GLU A . n D 4 250 TYR 250 250 250 TYR TYR A . n D 4 251 PRO 251 251 251 PRO PRO A . n D 4 252 HIS 252 252 252 HIS HIS A . n D 4 253 ARG 253 253 253 ARG ARG A . n D 4 254 ARG 254 254 254 ARG ARG A . n D 4 255 ILE 255 255 255 ILE ILE A . n D 4 256 ASP 256 256 256 ASP ASP A . n D 4 257 ILE 257 257 257 ILE ILE A . n D 4 258 ARG 258 258 258 ARG ARG A . n D 4 259 LEU 259 259 259 LEU LEU A . n D 4 260 ILE 260 260 260 ILE ILE A . n D 4 261 PRO 261 261 261 PRO PRO A . n D 4 262 LYS 262 262 262 LYS LYS A . n D 4 263 ASP 263 263 263 ASP ASP A . n D 4 264 GLN 264 264 264 GLN GLN A . n D 4 265 TYR 265 265 265 TYR TYR A . n D 4 266 TYR 266 266 266 TYR TYR A . n D 4 267 CYS 267 267 267 CYS CYS A . n D 4 268 GLY 268 268 268 GLY GLY A . n D 4 269 VAL 269 269 269 VAL VAL A . n D 4 270 LEU 270 270 270 LEU LEU A . n D 4 271 TYR 271 271 271 TYR TYR A . n D 4 272 PHE 272 272 272 PHE PHE A . n D 4 273 THR 273 273 273 THR THR A . n D 4 274 GLY 274 274 274 GLY GLY A . n D 4 275 SER 275 275 275 SER SER A . n D 4 276 ASP 276 276 276 ASP ASP A . n D 4 277 ILE 277 277 277 ILE ILE A . n D 4 278 PHE 278 278 278 PHE PHE A . n D 4 279 ASN 279 279 279 ASN ASN A . n D 4 280 LYS 280 280 280 LYS LYS A . n D 4 281 ASN 281 281 281 ASN ASN A . n D 4 282 MET 282 282 282 MET MET A . n D 4 283 ARG 283 283 283 ARG ARG A . n D 4 284 ALA 284 284 284 ALA ALA A . n D 4 285 HIS 285 285 285 HIS HIS A . n D 4 286 ALA 286 286 286 ALA ALA A . n D 4 287 LEU 287 287 287 LEU LEU A . n D 4 288 GLU 288 288 288 GLU GLU A . n D 4 289 LYS 289 289 289 LYS LYS A . n D 4 290 GLY 290 290 290 GLY GLY A . n D 4 291 PHE 291 291 291 PHE PHE A . n D 4 292 THR 292 292 292 THR THR A . n D 4 293 ILE 293 293 293 ILE ILE A . n D 4 294 ASN 294 294 294 ASN ASN A . n D 4 295 GLU 295 295 295 GLU GLU A . n D 4 296 TYR 296 296 296 TYR TYR A . n D 4 297 THR 297 297 297 THR THR A . n D 4 298 ILE 298 298 298 ILE ILE A . n D 4 299 ARG 299 299 299 ARG ARG A . n D 4 300 PRO 300 300 300 PRO PRO A . n D 4 301 LEU 301 301 301 LEU LEU A . n D 4 302 GLY 302 302 302 GLY GLY A . n D 4 303 VAL 303 303 303 VAL VAL A . n D 4 304 THR 304 304 304 THR THR A . n D 4 305 GLY 305 305 305 GLY GLY A . n D 4 306 VAL 306 306 306 VAL VAL A . n D 4 307 ALA 307 307 307 ALA ALA A . n D 4 308 GLY 308 308 308 GLY GLY A . n D 4 309 GLU 309 309 309 GLU GLU A . n D 4 310 PRO 310 310 310 PRO PRO A . n D 4 311 LEU 311 311 311 LEU LEU A . n D 4 312 PRO 312 312 312 PRO PRO A . n D 4 313 VAL 313 313 313 VAL VAL A . n D 4 314 ASP 314 314 314 ASP ASP A . n D 4 315 SER 315 315 315 SER SER A . n D 4 316 GLU 316 316 316 GLU GLU A . n D 4 317 LYS 317 317 317 LYS LYS A . n D 4 318 ASP 318 318 318 ASP ASP A . n D 4 319 ILE 319 319 319 ILE ILE A . n D 4 320 PHE 320 320 320 PHE PHE A . n D 4 321 ASP 321 321 321 ASP ASP A . n D 4 322 TYR 322 322 322 TYR TYR A . n D 4 323 ILE 323 323 323 ILE ILE A . n D 4 324 GLN 324 324 324 GLN GLN A . n D 4 325 TRP 325 325 325 TRP TRP A . n D 4 326 LYS 326 326 326 LYS LYS A . n D 4 327 TYR 327 327 327 TYR TYR A . n D 4 328 ARG 328 328 328 ARG ARG A . n D 4 329 GLU 329 329 329 GLU GLU A . n D 4 330 PRO 330 330 330 PRO PRO A . n D 4 331 LYS 331 331 331 LYS LYS A . n D 4 332 ASP 332 332 332 ASP ASP A . n D 4 333 ARG 333 333 333 ARG ARG A . n D 4 334 SER 334 334 334 SER SER A . n D 4 335 GLU 335 335 335 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NA 1 341 341 NA NA A . F 5 NA 1 342 342 NA NA A . G 6 HOH 1 509 509 HOH HOH T . G 6 HOH 2 513 513 HOH HOH T . G 6 HOH 3 519 519 HOH HOH T . G 6 HOH 4 522 522 HOH HOH T . G 6 HOH 5 523 523 HOH HOH T . G 6 HOH 6 524 524 HOH HOH T . H 6 HOH 1 506 506 HOH HOH P . H 6 HOH 2 508 508 HOH HOH P . H 6 HOH 3 515 515 HOH HOH P . H 6 HOH 4 521 521 HOH HOH P . H 6 HOH 5 525 525 HOH HOH P . H 6 HOH 6 527 527 HOH HOH P . I 6 HOH 1 514 514 HOH HOH D . J 6 HOH 1 500 500 HOH HOH A . J 6 HOH 2 501 501 HOH HOH A . J 6 HOH 3 502 502 HOH HOH A . J 6 HOH 4 504 504 HOH HOH A . J 6 HOH 5 505 505 HOH HOH A . J 6 HOH 6 507 507 HOH HOH A . J 6 HOH 7 510 510 HOH HOH A . J 6 HOH 8 511 511 HOH HOH A . J 6 HOH 9 512 512 HOH HOH A . J 6 HOH 10 516 516 HOH HOH A . J 6 HOH 11 517 517 HOH HOH A . J 6 HOH 12 518 518 HOH HOH A . J 6 HOH 13 520 520 HOH HOH A . J 6 HOH 14 526 526 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? E NA . ? A NA 341 ? 1_555 O ? D THR 101 ? A THR 101 ? 1_555 151.7 ? 2 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? E NA . ? A NA 341 ? 1_555 O ? D VAL 103 ? A VAL 103 ? 1_555 89.4 ? 3 O ? D THR 101 ? A THR 101 ? 1_555 NA ? E NA . ? A NA 341 ? 1_555 O ? D VAL 103 ? A VAL 103 ? 1_555 78.4 ? 4 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? E NA . ? A NA 341 ? 1_555 O ? D ILE 106 ? A ILE 106 ? 1_555 86.2 ? 5 O ? D THR 101 ? A THR 101 ? 1_555 NA ? E NA . ? A NA 341 ? 1_555 O ? D ILE 106 ? A ILE 106 ? 1_555 119.1 ? 6 O ? D VAL 103 ? A VAL 103 ? 1_555 NA ? E NA . ? A NA 341 ? 1_555 O ? D ILE 106 ? A ILE 106 ? 1_555 91.1 ? 7 OP1 ? B DG 9 ? P DG 9 ? 1_555 NA ? E NA . ? A NA 341 ? 1_555 O ? J HOH . ? A HOH 500 ? 1_555 78.1 ? 8 O ? D THR 101 ? A THR 101 ? 1_555 NA ? E NA . ? A NA 341 ? 1_555 O ? J HOH . ? A HOH 500 ? 1_555 76.1 ? 9 O ? D VAL 103 ? A VAL 103 ? 1_555 NA ? E NA . ? A NA 341 ? 1_555 O ? J HOH . ? A HOH 500 ? 1_555 88.1 ? 10 O ? D ILE 106 ? A ILE 106 ? 1_555 NA ? E NA . ? A NA 341 ? 1_555 O ? J HOH . ? A HOH 500 ? 1_555 164.3 ? 11 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? F NA . ? A NA 342 ? 1_555 O ? D LYS 60 ? A LYS 60 ? 1_555 152.9 ? 12 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? F NA . ? A NA 342 ? 1_555 O ? D LEU 62 ? A LEU 62 ? 1_555 74.2 ? 13 O ? D LYS 60 ? A LYS 60 ? 1_555 NA ? F NA . ? A NA 342 ? 1_555 O ? D LEU 62 ? A LEU 62 ? 1_555 81.0 ? 14 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? F NA . ? A NA 342 ? 1_555 O ? D VAL 65 ? A VAL 65 ? 1_555 69.9 ? 15 O ? D LYS 60 ? A LYS 60 ? 1_555 NA ? F NA . ? A NA 342 ? 1_555 O ? D VAL 65 ? A VAL 65 ? 1_555 99.3 ? 16 O ? D LEU 62 ? A LEU 62 ? 1_555 NA ? F NA . ? A NA 342 ? 1_555 O ? D VAL 65 ? A VAL 65 ? 1_555 89.0 ? 17 OP1 ? C DC 3 ? D DC 3 ? 1_555 NA ? F NA . ? A NA 342 ? 1_555 O ? J HOH . ? A HOH 502 ? 1_555 72.9 ? 18 O ? D LYS 60 ? A LYS 60 ? 1_555 NA ? F NA . ? A NA 342 ? 1_555 O ? J HOH . ? A HOH 502 ? 1_555 105.7 ? 19 O ? D LEU 62 ? A LEU 62 ? 1_555 NA ? F NA . ? A NA 342 ? 1_555 O ? J HOH . ? A HOH 502 ? 1_555 63.7 ? 20 O ? D VAL 65 ? A VAL 65 ? 1_555 NA ? F NA . ? A NA 342 ? 1_555 O ? J HOH . ? A HOH 502 ? 1_555 138.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-06-16 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_initial_refinement_model 3 4 'Structure model' pdbx_struct_conn_angle 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.value' 18 4 'Structure model' '_struct_conn.pdbx_dist_value' 19 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 33 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 34 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 35 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 MERLOT phasing . ? 3 TNT refinement 5D ? 4 # _pdbx_entry_details.entry_id 1BPZ _pdbx_entry_details.compound_details ;THE 5'-TERMINUS OF G D 1 IS PHOSPHORYLATED. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 T DG 3 ? ? N7 T DG 3 ? ? 1.426 1.388 0.038 0.006 N 2 1 "C5'" T DA 4 ? ? "C4'" T DA 4 ? ? 1.555 1.512 0.043 0.007 N 3 1 N7 T DA 4 ? ? C8 T DA 4 ? ? 1.376 1.311 0.065 0.007 N 4 1 C6 T DA 4 ? ? N6 T DA 4 ? ? 1.396 1.335 0.061 0.008 N 5 1 "O4'" T DC 5 ? ? "C1'" T DC 5 ? ? 1.341 1.418 -0.077 0.012 N 6 1 N1 T DC 5 ? ? C6 T DC 5 ? ? 1.313 1.367 -0.054 0.006 N 7 1 N3 T DC 5 ? ? C4 T DC 5 ? ? 1.279 1.335 -0.056 0.007 N 8 1 C4 T DC 5 ? ? C5 T DC 5 ? ? 1.371 1.425 -0.054 0.008 N 9 1 "O3'" T DA 7 ? ? "C3'" T DA 7 ? ? 1.373 1.419 -0.046 0.006 N 10 1 "O4'" T DA 11 ? ? "C4'" T DA 11 ? ? 1.370 1.446 -0.076 0.010 N 11 1 "O3'" T DA 14 ? ? "C3'" T DA 14 ? ? 1.346 1.419 -0.073 0.006 N 12 1 "C5'" T DG 15 ? ? "C4'" T DG 15 ? ? 1.560 1.512 0.048 0.007 N 13 1 N3 T DG 15 ? ? C4 T DG 15 ? ? 1.267 1.350 -0.083 0.007 N 14 1 N3 T DC 16 ? ? C4 T DC 16 ? ? 1.292 1.335 -0.043 0.007 N 15 1 C5 P DG 1 ? ? C6 P DG 1 ? ? 1.335 1.419 -0.084 0.010 N 16 1 C5 P DG 1 ? ? N7 P DG 1 ? ? 1.346 1.388 -0.042 0.006 N 17 1 N9 P DG 1 ? ? C4 P DG 1 ? ? 1.310 1.375 -0.065 0.008 N 18 1 C5 P DG 4 ? ? N7 P DG 4 ? ? 1.427 1.388 0.039 0.006 N 19 1 C5 P DA 5 ? ? C6 P DA 5 ? ? 1.461 1.406 0.055 0.009 N 20 1 C5 P DA 5 ? ? N7 P DA 5 ? ? 1.432 1.388 0.044 0.006 N 21 1 "O3'" P DG 7 ? ? "C3'" P DG 7 ? ? 1.330 1.419 -0.089 0.006 N 22 1 C2 P DG 9 ? ? N3 P DG 9 ? ? 1.375 1.323 0.052 0.008 N 23 1 C5 P DG 9 ? ? N7 P DG 9 ? ? 1.455 1.388 0.067 0.006 N 24 1 C4 P DT 10 ? ? C5 P DT 10 ? ? 1.356 1.445 -0.089 0.009 N 25 1 P D DG 1 ? ? OP3 D DG 1 ? ? 1.485 1.607 -0.122 0.012 N 26 1 "O3'" D DG 1 ? ? "C3'" D DG 1 ? ? 1.524 1.435 0.089 0.013 N 27 1 C4 D DG 1 ? ? C5 D DG 1 ? ? 1.328 1.379 -0.051 0.007 N 28 1 C5 D DG 1 ? ? N7 D DG 1 ? ? 1.440 1.388 0.052 0.006 N 29 1 "C5'" D DC 3 ? ? "C4'" D DC 3 ? ? 1.561 1.512 0.049 0.007 N 30 1 "O3'" D DC 3 ? ? "C3'" D DC 3 ? ? 1.371 1.419 -0.048 0.006 N 31 1 N7 D DG 4 ? ? C8 D DG 4 ? ? 1.357 1.305 0.052 0.006 N 32 1 N7 D DG 5 ? ? C8 D DG 5 ? ? 1.348 1.305 0.043 0.006 N 33 1 CB A GLU 9 ? ? CG A GLU 9 ? ? 1.647 1.517 0.130 0.019 N 34 1 CD A GLU 21 ? ? OE1 A GLU 21 ? ? 1.319 1.252 0.067 0.011 N 35 1 CD A GLU 58 ? ? OE1 A GLU 58 ? ? 1.364 1.252 0.112 0.011 N 36 1 CD A GLU 71 ? ? OE2 A GLU 71 ? ? 1.329 1.252 0.077 0.011 N 37 1 CD A GLU 86 ? ? OE1 A GLU 86 ? ? 1.318 1.252 0.066 0.011 N 38 1 CD A GLU 129 ? ? OE2 A GLU 129 ? ? 1.332 1.252 0.080 0.011 N 39 1 CD A GLU 147 ? ? OE2 A GLU 147 ? ? 1.331 1.252 0.079 0.011 N 40 1 CD A GLU 153 ? ? OE2 A GLU 153 ? ? 1.320 1.252 0.068 0.011 N 41 1 CD A GLU 154 ? ? OE2 A GLU 154 ? ? 1.327 1.252 0.075 0.011 N 42 1 CD A GLU 165 ? ? OE2 A GLU 165 ? ? 1.319 1.252 0.067 0.011 N 43 1 CD A GLU 172 ? ? OE2 A GLU 172 ? ? 1.323 1.252 0.071 0.011 N 44 1 CD A GLU 203 ? ? OE1 A GLU 203 ? ? 1.323 1.252 0.071 0.011 N 45 1 CD A GLU 232 ? ? OE2 A GLU 232 ? ? 1.327 1.252 0.075 0.011 N 46 1 CD A GLU 335 ? ? OE2 A GLU 335 ? ? 1.318 1.252 0.066 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" T DC 1 ? ? "C1'" T DC 1 ? ? N1 T DC 1 ? ? 101.62 108.00 -6.38 0.70 N 2 1 C6 T DC 1 ? ? N1 T DC 1 ? ? C2 T DC 1 ? ? 122.76 120.30 2.46 0.40 N 3 1 "C4'" T DC 2 ? ? "C3'" T DC 2 ? ? "C2'" T DC 2 ? ? 109.73 103.10 6.63 0.90 N 4 1 "O4'" T DC 2 ? ? "C1'" T DC 2 ? ? N1 T DC 2 ? ? 110.50 108.30 2.20 0.30 N 5 1 N3 T DC 2 ? ? C4 T DC 2 ? ? C5 T DC 2 ? ? 118.94 121.90 -2.96 0.40 N 6 1 "C3'" T DC 2 ? ? "O3'" T DC 2 ? ? P T DG 3 ? ? 132.82 119.70 13.12 1.20 Y 7 1 "O4'" T DG 3 ? ? "C1'" T DG 3 ? ? N9 T DG 3 ? ? 113.10 108.30 4.80 0.30 N 8 1 C2 T DA 4 ? ? N3 T DA 4 ? ? C4 T DA 4 ? ? 107.54 110.60 -3.06 0.50 N 9 1 C5 T DA 4 ? ? C6 T DA 4 ? ? N1 T DA 4 ? ? 114.03 117.70 -3.67 0.50 N 10 1 N1 T DC 5 ? ? "C1'" T DC 5 ? ? "C2'" T DC 5 ? ? 124.36 114.30 10.06 1.40 N 11 1 "O4'" T DC 5 ? ? "C1'" T DC 5 ? ? N1 T DC 5 ? ? 113.39 108.30 5.09 0.30 N 12 1 C6 T DC 5 ? ? N1 T DC 5 ? ? C2 T DC 5 ? ? 116.59 120.30 -3.71 0.40 N 13 1 N1 T DC 5 ? ? C2 T DC 5 ? ? N3 T DC 5 ? ? 124.11 119.20 4.91 0.70 N 14 1 N1 T DC 5 ? ? C2 T DC 5 ? ? O2 T DC 5 ? ? 114.42 118.90 -4.48 0.60 N 15 1 C8 T DA 7 ? ? N9 T DA 7 ? ? C4 T DA 7 ? ? 108.88 105.80 3.08 0.40 N 16 1 "O5'" T DC 8 ? ? "C5'" T DC 8 ? ? "C4'" T DC 8 ? ? 103.66 109.40 -5.74 0.80 N 17 1 "O4'" T DC 8 ? ? "C1'" T DC 8 ? ? "C2'" T DC 8 ? ? 109.85 106.80 3.05 0.50 N 18 1 "O4'" T DG 9 ? ? "C1'" T DG 9 ? ? N9 T DG 9 ? ? 100.77 108.00 -7.23 0.70 N 19 1 N9 T DG 9 ? ? C4 T DG 9 ? ? C5 T DG 9 ? ? 102.45 105.40 -2.95 0.40 N 20 1 C6 T DG 9 ? ? C5 T DG 9 ? ? N7 T DG 9 ? ? 126.73 130.40 -3.67 0.60 N 21 1 "C5'" T DC 10 ? ? "C4'" T DC 10 ? ? "C3'" T DC 10 ? ? 123.05 115.70 7.35 1.20 N 22 1 C2 T DC 10 ? ? N3 T DC 10 ? ? C4 T DC 10 ? ? 116.37 119.90 -3.53 0.50 N 23 1 N3 T DC 10 ? ? C4 T DC 10 ? ? C5 T DC 10 ? ? 126.68 121.90 4.78 0.40 N 24 1 "C3'" T DC 10 ? ? "O3'" T DC 10 ? ? P T DA 11 ? ? 127.19 119.70 7.49 1.20 Y 25 1 "O4'" T DA 11 ? ? "C1'" T DA 11 ? ? N9 T DA 11 ? ? 102.95 108.00 -5.05 0.70 N 26 1 N7 T DA 11 ? ? C8 T DA 11 ? ? N9 T DA 11 ? ? 110.20 113.80 -3.60 0.50 N 27 1 C8 T DA 11 ? ? N9 T DA 11 ? ? C4 T DA 11 ? ? 109.84 105.80 4.04 0.40 N 28 1 N9 T DA 11 ? ? C4 T DA 11 ? ? C5 T DA 11 ? ? 103.28 105.80 -2.52 0.40 N 29 1 N1 T DC 13 ? ? "C1'" T DC 13 ? ? "C2'" T DC 13 ? ? 126.64 114.30 12.34 1.40 N 30 1 "O4'" T DA 14 ? ? "C1'" T DA 14 ? ? N9 T DA 14 ? ? 99.86 108.00 -8.14 0.70 N 31 1 N7 T DA 14 ? ? C8 T DA 14 ? ? N9 T DA 14 ? ? 110.76 113.80 -3.04 0.50 N 32 1 C8 T DA 14 ? ? N9 T DA 14 ? ? C4 T DA 14 ? ? 109.36 105.80 3.56 0.40 N 33 1 "C5'" T DG 15 ? ? "C4'" T DG 15 ? ? "C3'" T DG 15 ? ? 123.22 115.70 7.52 1.20 N 34 1 P T DC 16 ? ? "O5'" T DC 16 ? ? "C5'" T DC 16 ? ? 110.97 120.90 -9.93 1.60 N 35 1 "O4'" T DC 16 ? ? "C1'" T DC 16 ? ? "C2'" T DC 16 ? ? 110.56 106.80 3.76 0.50 N 36 1 "O4'" T DC 16 ? ? "C1'" T DC 16 ? ? N1 T DC 16 ? ? 111.15 108.30 2.85 0.30 N 37 1 C6 T DC 16 ? ? N1 T DC 16 ? ? C2 T DC 16 ? ? 122.85 120.30 2.55 0.40 N 38 1 N3 T DC 16 ? ? C4 T DC 16 ? ? N4 T DC 16 ? ? 111.47 118.00 -6.53 0.70 N 39 1 C5 T DC 16 ? ? C4 T DC 16 ? ? N4 T DC 16 ? ? 124.86 120.20 4.66 0.70 N 40 1 "O4'" P DG 1 ? ? "C1'" P DG 1 ? ? "C2'" P DG 1 ? ? 110.53 106.80 3.73 0.50 N 41 1 "O4'" P DG 1 ? ? "C1'" P DG 1 ? ? N9 P DG 1 ? ? 102.53 108.00 -5.47 0.70 N 42 1 C2 P DG 1 ? ? N3 P DG 1 ? ? C4 P DG 1 ? ? 107.38 111.90 -4.52 0.50 N 43 1 N3 P DG 1 ? ? C4 P DG 1 ? ? C5 P DG 1 ? ? 131.95 128.60 3.35 0.50 N 44 1 C8 P DG 1 ? ? N9 P DG 1 ? ? C4 P DG 1 ? ? 109.20 106.40 2.80 0.40 N 45 1 "O4'" P DC 2 ? ? "C1'" P DC 2 ? ? N1 P DC 2 ? ? 111.29 108.30 2.99 0.30 N 46 1 "O4'" P DT 3 ? ? "C1'" P DT 3 ? ? N1 P DT 3 ? ? 112.57 108.30 4.27 0.30 N 47 1 "O4'" P DG 4 ? ? "C1'" P DG 4 ? ? N9 P DG 4 ? ? 112.07 108.30 3.77 0.30 N 48 1 C8 P DG 4 ? ? N9 P DG 4 ? ? C4 P DG 4 ? ? 110.37 106.40 3.97 0.40 N 49 1 P P DA 5 ? ? "O5'" P DA 5 ? ? "C5'" P DA 5 ? ? 109.80 120.90 -11.10 1.60 N 50 1 N9 P DA 5 ? ? "C1'" P DA 5 ? ? "C2'" P DA 5 ? ? 124.29 114.30 9.99 1.40 N 51 1 C8 P DA 5 ? ? N9 P DA 5 ? ? C4 P DA 5 ? ? 108.79 105.80 2.99 0.40 N 52 1 N1 P DA 5 ? ? C6 P DA 5 ? ? N6 P DA 5 ? ? 114.88 118.60 -3.72 0.60 N 53 1 "C4'" P DT 6 ? ? "C3'" P DT 6 ? ? "C2'" P DT 6 ? ? 108.93 103.10 5.83 0.90 N 54 1 "O4'" P DT 6 ? ? "C1'" P DT 6 ? ? "C2'" P DT 6 ? ? 111.79 106.80 4.99 0.50 N 55 1 N1 P DT 6 ? ? "C1'" P DT 6 ? ? "C2'" P DT 6 ? ? 129.28 114.30 14.98 1.40 N 56 1 "O4'" P DT 6 ? ? "C1'" P DT 6 ? ? N1 P DT 6 ? ? 110.25 108.30 1.95 0.30 N 57 1 C2 P DT 6 ? ? N3 P DT 6 ? ? C4 P DT 6 ? ? 123.57 127.20 -3.63 0.60 N 58 1 "O4'" P DG 7 ? ? "C1'" P DG 7 ? ? N9 P DG 7 ? ? 100.69 108.00 -7.31 0.70 N 59 1 "O4'" P DC 8 ? ? "C1'" P DC 8 ? ? N1 P DC 8 ? ? 110.49 108.30 2.19 0.30 N 60 1 N1 P DC 8 ? ? C2 P DC 8 ? ? O2 P DC 8 ? ? 114.83 118.90 -4.07 0.60 N 61 1 "O5'" P DG 9 ? ? P P DG 9 ? ? OP2 P DG 9 ? ? 119.96 110.70 9.26 1.20 N 62 1 C8 P DG 9 ? ? N9 P DG 9 ? ? C4 P DG 9 ? ? 110.50 106.40 4.10 0.40 N 63 1 "O5'" P DT 10 ? ? P P DT 10 ? ? OP1 P DT 10 ? ? 94.79 105.70 -10.91 0.90 N 64 1 P P DT 10 ? ? "O5'" P DT 10 ? ? "C5'" P DT 10 ? ? 107.77 120.90 -13.13 1.60 N 65 1 "O4'" P DT 10 ? ? "C1'" P DT 10 ? ? "C2'" P DT 10 ? ? 109.85 106.80 3.05 0.50 N 66 1 "O4'" P DT 10 ? ? "C1'" P DT 10 ? ? N1 P DT 10 ? ? 111.65 108.30 3.35 0.30 N 67 1 N3 P DT 10 ? ? C4 P DT 10 ? ? O4 P DT 10 ? ? 124.84 119.90 4.94 0.60 N 68 1 C5 P DT 10 ? ? C4 P DT 10 ? ? O4 P DT 10 ? ? 116.89 124.90 -8.01 0.70 N 69 1 C4 P DT 10 ? ? C5 P DT 10 ? ? C7 P DT 10 ? ? 110.30 119.00 -8.70 0.60 N 70 1 C6 P DT 10 ? ? C5 P DT 10 ? ? C7 P DT 10 ? ? 130.08 122.90 7.18 0.60 N 71 1 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 101.86 108.00 -6.14 0.70 N 72 1 N7 D DG 1 ? ? C8 D DG 1 ? ? N9 D DG 1 ? ? 106.62 113.10 -6.48 0.50 N 73 1 C8 D DG 1 ? ? N9 D DG 1 ? ? C4 D DG 1 ? ? 112.44 106.40 6.04 0.40 N 74 1 N9 D DG 1 ? ? C4 D DG 1 ? ? C5 D DG 1 ? ? 102.80 105.40 -2.60 0.40 N 75 1 "O5'" D DT 2 ? ? P D DT 2 ? ? OP1 D DT 2 ? ? 99.36 105.70 -6.34 0.90 N 76 1 P D DT 2 ? ? "O5'" D DT 2 ? ? "C5'" D DT 2 ? ? 104.66 120.90 -16.24 1.60 N 77 1 C4 D DT 2 ? ? C5 D DT 2 ? ? C7 D DT 2 ? ? 123.99 119.00 4.99 0.60 N 78 1 C6 D DT 2 ? ? C5 D DT 2 ? ? C7 D DT 2 ? ? 118.37 122.90 -4.53 0.60 N 79 1 "O4'" D DG 4 ? ? "C1'" D DG 4 ? ? "C2'" D DG 4 ? ? 109.88 106.80 3.08 0.50 N 80 1 "O4'" D DG 4 ? ? "C1'" D DG 4 ? ? N9 D DG 4 ? ? 112.71 108.30 4.41 0.30 N 81 1 C8 D DG 4 ? ? N9 D DG 4 ? ? C4 D DG 4 ? ? 109.23 106.40 2.83 0.40 N 82 1 N3 D DG 4 ? ? C4 D DG 4 ? ? N9 D DG 4 ? ? 122.26 126.00 -3.74 0.60 N 83 1 "O5'" D DG 5 ? ? "C5'" D DG 5 ? ? "C4'" D DG 5 ? ? 103.88 109.40 -5.52 0.80 N 84 1 C2 D DG 5 ? ? N3 D DG 5 ? ? C4 D DG 5 ? ? 107.92 111.90 -3.98 0.50 N 85 1 N3 D DG 5 ? ? C4 D DG 5 ? ? C5 D DG 5 ? ? 131.67 128.60 3.07 0.50 N 86 1 N7 D DG 5 ? ? C8 D DG 5 ? ? N9 D DG 5 ? ? 108.84 113.10 -4.26 0.50 N 87 1 C8 D DG 5 ? ? N9 D DG 5 ? ? C4 D DG 5 ? ? 110.64 106.40 4.24 0.40 N 88 1 C A ALA 6 ? ? N A PRO 7 ? ? CA A PRO 7 ? ? 129.07 119.30 9.77 1.50 Y 89 1 N A GLN 8 ? ? CA A GLN 8 ? ? C A GLN 8 ? ? 134.93 111.00 23.93 2.70 N 90 1 CB A ASP 17 ? ? CG A ASP 17 ? ? OD1 A ASP 17 ? ? 124.84 118.30 6.54 0.90 N 91 1 CB A ASP 17 ? ? CG A ASP 17 ? ? OD2 A ASP 17 ? ? 110.46 118.30 -7.84 0.90 N 92 1 CB A TYR 39 ? ? CG A TYR 39 ? ? CD2 A TYR 39 ? ? 126.32 121.00 5.32 0.60 N 93 1 CB A TYR 39 ? ? CG A TYR 39 ? ? CD1 A TYR 39 ? ? 116.27 121.00 -4.73 0.60 N 94 1 N A ARG 40 ? ? CA A ARG 40 ? ? CB A ARG 40 ? ? 122.00 110.60 11.40 1.80 N 95 1 CA A THR 67 ? ? CB A THR 67 ? ? CG2 A THR 67 ? ? 103.16 112.40 -9.24 1.40 N 96 1 CB A ASP 74 ? ? CG A ASP 74 ? ? OD1 A ASP 74 ? ? 124.73 118.30 6.43 0.90 N 97 1 CB A ASP 74 ? ? CG A ASP 74 ? ? OD2 A ASP 74 ? ? 110.71 118.30 -7.59 0.90 N 98 1 NE A ARG 83 ? ? CZ A ARG 83 ? ? NH1 A ARG 83 ? ? 124.45 120.30 4.15 0.50 N 99 1 NE A ARG 83 ? ? CZ A ARG 83 ? ? NH2 A ARG 83 ? ? 116.21 120.30 -4.09 0.50 N 100 1 CB A ASP 91 ? ? CG A ASP 91 ? ? OD1 A ASP 91 ? ? 112.40 118.30 -5.90 0.90 N 101 1 CB A ASP 92 ? ? CG A ASP 92 ? ? OD1 A ASP 92 ? ? 111.90 118.30 -6.40 0.90 N 102 1 CA A THR 101 ? ? CB A THR 101 ? ? OG1 A THR 101 ? ? 95.91 109.00 -13.09 2.10 N 103 1 NE A ARG 102 ? ? CZ A ARG 102 ? ? NH2 A ARG 102 ? ? 116.05 120.30 -4.25 0.50 N 104 1 N A SER 109 ? ? CA A SER 109 ? ? CB A SER 109 ? ? 122.25 110.50 11.75 1.50 N 105 1 N A ALA 110 ? ? CA A ALA 110 ? ? CB A ALA 110 ? ? 101.30 110.10 -8.80 1.40 N 106 1 NE A ARG 126 ? ? CZ A ARG 126 ? ? NH1 A ARG 126 ? ? 124.43 120.30 4.13 0.50 N 107 1 NE A ARG 126 ? ? CZ A ARG 126 ? ? NH2 A ARG 126 ? ? 115.66 120.30 -4.64 0.50 N 108 1 CB A ASP 130 ? ? CG A ASP 130 ? ? OD1 A ASP 130 ? ? 124.09 118.30 5.79 0.90 N 109 1 CB A ASP 130 ? ? CG A ASP 130 ? ? OD2 A ASP 130 ? ? 111.64 118.30 -6.66 0.90 N 110 1 CB A LEU 132 ? ? CA A LEU 132 ? ? C A LEU 132 ? ? 97.08 110.20 -13.12 1.90 N 111 1 CB A LYS 148 ? ? CA A LYS 148 ? ? C A LYS 148 ? ? 97.90 110.40 -12.50 2.00 N 112 1 C A ILE 150 ? ? N A PRO 151 ? ? CD A PRO 151 ? ? 109.00 128.40 -19.40 2.10 Y 113 1 CB A ASP 160 ? ? CG A ASP 160 ? ? OD2 A ASP 160 ? ? 111.45 118.30 -6.85 0.90 N 114 1 N A ASN 164 ? ? CA A ASN 164 ? ? CB A ASN 164 ? ? 121.72 110.60 11.12 1.80 N 115 1 CB A ASP 170 ? ? CG A ASP 170 ? ? OD1 A ASP 170 ? ? 125.63 118.30 7.33 0.90 N 116 1 CB A ASP 170 ? ? CG A ASP 170 ? ? OD2 A ASP 170 ? ? 110.77 118.30 -7.53 0.90 N 117 1 CB A ASP 190 ? ? CG A ASP 190 ? ? OD2 A ASP 190 ? ? 112.61 118.30 -5.69 0.90 N 118 1 CB A ASP 246 ? ? CG A ASP 246 ? ? OD1 A ASP 246 ? ? 124.14 118.30 5.84 0.90 N 119 1 CB A ASP 246 ? ? CG A ASP 246 ? ? OD2 A ASP 246 ? ? 112.13 118.30 -6.17 0.90 N 120 1 CD A ARG 258 ? ? NE A ARG 258 ? ? CZ A ARG 258 ? ? 132.21 123.60 8.61 1.40 N 121 1 NE A ARG 258 ? ? CZ A ARG 258 ? ? NH1 A ARG 258 ? ? 125.45 120.30 5.15 0.50 N 122 1 NE A ARG 258 ? ? CZ A ARG 258 ? ? NH2 A ARG 258 ? ? 116.66 120.30 -3.64 0.50 N 123 1 CB A ASP 276 ? ? CG A ASP 276 ? ? OD1 A ASP 276 ? ? 112.71 118.30 -5.59 0.90 N 124 1 C A LEU 311 ? ? N A PRO 312 ? ? CD A PRO 312 ? ? 114.35 128.40 -14.05 2.10 Y 125 1 CB A ASP 314 ? ? CG A ASP 314 ? ? OD1 A ASP 314 ? ? 111.43 118.30 -6.87 0.90 N 126 1 CB A ASP 318 ? ? CG A ASP 318 ? ? OD2 A ASP 318 ? ? 112.71 118.30 -5.59 0.90 N 127 1 CB A ASP 321 ? ? CG A ASP 321 ? ? OD1 A ASP 321 ? ? 124.01 118.30 5.71 0.90 N 128 1 CB A ASP 321 ? ? CG A ASP 321 ? ? OD2 A ASP 321 ? ? 112.74 118.30 -5.56 0.90 N 129 1 CB A ASP 332 ? ? CG A ASP 332 ? ? OD1 A ASP 332 ? ? 112.03 118.30 -6.27 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 7 ? ? -85.10 -82.74 2 1 GLN A 8 ? ? 47.31 -5.63 3 1 GLU A 9 ? ? -73.94 -76.42 4 1 LEU A 11 ? ? -77.96 -87.17 5 1 LYS A 27 ? ? -55.96 -81.13 6 1 GLN A 31 ? ? 80.12 35.68 7 1 ALA A 32 ? ? -104.18 79.67 8 1 ALA A 38 ? ? -61.09 -71.15 9 1 ALA A 42 ? ? -50.66 -78.73 10 1 TYR A 49 ? ? -53.17 105.16 11 1 PRO A 50 ? ? -58.48 47.07 12 1 LYS A 81 ? ? -160.08 -161.94 13 1 GLU A 117 ? ? -68.02 21.76 14 1 LYS A 120 ? ? -163.64 12.09 15 1 LYS A 127 ? ? -86.55 32.53 16 1 ASN A 128 ? ? -160.96 13.49 17 1 GLU A 129 ? ? -39.72 -18.84 18 1 LYS A 131 ? ? -91.39 33.31 19 1 LYS A 141 ? ? -58.97 -93.47 20 1 TYR A 142 ? ? -60.80 31.57 21 1 PHE A 143 ? ? -45.50 -74.40 22 1 ARG A 152 ? ? -30.24 -28.67 23 1 THR A 176 ? ? -163.55 119.52 24 1 ARG A 183 ? ? -80.64 44.98 25 1 ALA A 185 ? ? -45.83 156.75 26 1 SER A 187 ? ? 179.45 102.83 27 1 SER A 202 ? ? -38.19 -84.03 28 1 GLU A 203 ? ? -64.60 0.26 29 1 VAL A 221 ? ? -81.00 38.94 30 1 HIS A 222 ? ? 41.60 22.95 31 1 THR A 225 ? ? -83.61 -81.52 32 1 SER A 229 ? ? 179.16 157.48 33 1 PRO A 242 ? ? -52.66 103.40 34 1 TYR A 250 ? ? -63.03 -170.32 35 1 TYR A 265 ? ? -61.33 -84.98 36 1 TYR A 266 ? ? -27.30 -47.85 37 1 THR A 273 ? ? -47.85 -18.22 38 1 ASN A 294 ? ? -161.05 -149.60 39 1 GLU A 309 ? ? 67.38 99.08 40 1 SER A 315 ? ? 175.02 148.58 41 1 TYR A 327 ? ? -56.35 94.09 42 1 ARG A 333 ? ? -86.26 35.73 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id CA _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id ASN _pdbx_validate_chiral.auth_seq_id 164 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? D MET 1 2 1 Y 1 A SER 2 ? D SER 2 3 1 Y 1 A LYS 3 ? D LYS 3 4 1 Y 1 A ARG 4 ? D ARG 4 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1BPZ 'double helix' 1BPZ 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 C DG 5 1_555 -0.252 -0.122 0.130 -0.101 -2.440 -0.143 1 T_DC1:DG5_D T 1 ? D 5 ? 19 1 1 A DC 2 1_555 C DG 4 1_555 0.492 -0.303 0.147 -2.951 0.142 -0.041 2 T_DC2:DG4_D T 2 ? D 4 ? 19 1 1 A DG 3 1_555 C DC 3 1_555 -0.299 -0.174 -0.029 -0.597 -2.945 -5.502 3 T_DG3:DC3_D T 3 ? D 3 ? 19 1 1 A DA 4 1_555 C DT 2 1_555 -0.076 -0.095 -0.016 0.191 -1.021 1.782 4 T_DA4:DT2_D T 4 ? D 2 ? 20 1 1 A DC 5 1_555 C DG 1 1_555 -0.528 -0.062 -0.093 1.192 -0.591 -0.415 5 T_DC5:DG1_D T 5 ? D 1 ? 19 1 1 A DC 6 1_555 B DG 11 1_555 -0.184 -0.052 0.082 -2.074 0.037 1.966 6 T_DC6:DG11_P T 6 ? P 11 ? 19 1 1 A DA 7 1_555 B DT 10 1_555 0.183 -0.089 -0.126 -0.910 -3.831 -8.142 7 T_DA7:DT10_P T 7 ? P 10 ? 20 1 1 A DC 8 1_555 B DG 9 1_555 0.341 -0.079 -0.048 2.547 -3.038 -1.251 8 T_DC8:DG9_P T 8 ? P 9 ? 19 1 1 A DG 9 1_555 B DC 8 1_555 0.449 -0.194 0.094 1.677 -0.835 -2.488 9 T_DG9:DC8_P T 9 ? P 8 ? 19 1 1 A DC 10 1_555 B DG 7 1_555 -0.580 -0.184 0.083 0.815 -0.661 -2.953 10 T_DC10:DG7_P T 10 ? P 7 ? 19 1 1 A DA 11 1_555 B DT 6 1_555 -0.022 -0.038 0.108 1.057 -2.022 -9.926 11 T_DA11:DT6_P T 11 ? P 6 ? 20 1 1 A DT 12 1_555 B DA 5 1_555 -0.217 0.038 0.135 -1.273 -2.399 -0.251 12 T_DT12:DA5_P T 12 ? P 5 ? 20 1 1 A DC 13 1_555 B DG 4 1_555 0.527 -0.218 0.029 0.499 -4.175 -1.660 13 T_DC13:DG4_P T 13 ? P 4 ? 19 1 1 A DA 14 1_555 B DT 3 1_555 -0.760 -0.336 -0.081 -0.062 -3.866 -1.978 14 T_DA14:DT3_P T 14 ? P 3 ? 20 1 1 A DG 15 1_555 B DC 2 1_555 0.236 -0.056 -0.031 -0.112 -2.702 3.341 15 T_DG15:DC2_P T 15 ? P 2 ? 19 1 1 A DC 16 1_555 B DG 1 1_555 -0.253 -0.229 -0.010 1.226 -2.441 -0.715 16 T_DC16:DG1_P T 16 ? P 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 C DG 5 1_555 A DC 2 1_555 C DG 4 1_555 0.836 0.129 3.475 0.125 2.365 39.694 -0.102 -1.213 3.479 3.478 -0.184 39.762 1 TT_DC1DC2:DG4DG5_DD T 1 ? D 5 ? T 2 ? D 4 ? 1 A DC 2 1_555 C DG 4 1_555 A DG 3 1_555 C DC 3 1_555 -1.136 0.393 3.117 -2.645 -0.625 32.546 0.804 1.577 3.189 -1.113 4.710 32.656 2 TT_DC2DG3:DC3DG4_DD T 2 ? D 4 ? T 3 ? D 3 ? 1 A DG 3 1_555 C DC 3 1_555 A DA 4 1_555 C DT 2 1_555 -0.273 -0.165 3.320 -1.477 2.461 38.065 -0.567 0.229 3.311 3.767 2.261 38.169 3 TT_DG3DA4:DT2DC3_DD T 3 ? D 3 ? T 4 ? D 2 ? 1 A DA 4 1_555 C DT 2 1_555 A DC 5 1_555 C DG 1 1_555 0.524 -0.332 3.379 0.039 -0.054 23.466 -0.797 -1.275 3.380 -0.132 -0.095 23.466 4 TT_DA4DC5:DG1DT2_DD T 4 ? D 2 ? T 5 ? D 1 ? 1 A DC 6 1_555 B DG 11 1_555 A DA 7 1_555 B DT 10 1_555 -0.400 0.961 3.973 2.060 4.312 29.756 0.764 1.287 4.032 8.329 -3.979 30.128 5 TT_DC6DA7:DT10DG11_PP T 6 ? P 11 ? T 7 ? P 10 ? 1 A DA 7 1_555 B DT 10 1_555 A DC 8 1_555 B DG 9 1_555 1.070 -0.554 3.370 -0.258 2.160 28.814 -1.600 -2.203 3.310 4.334 0.518 28.894 6 TT_DA7DC8:DG9DT10_PP T 7 ? P 10 ? T 8 ? P 9 ? 1 A DC 8 1_555 B DG 9 1_555 A DG 9 1_555 B DC 8 1_555 -0.915 0.238 3.484 -2.322 12.492 38.864 -1.155 1.034 3.444 18.192 3.381 40.812 7 TT_DC8DG9:DC8DG9_PP T 8 ? P 9 ? T 9 ? P 8 ? 1 A DG 9 1_555 B DC 8 1_555 A DC 10 1_555 B DG 7 1_555 -0.280 -0.596 3.235 -3.125 5.051 20.117 -3.725 -0.521 3.004 14.070 8.703 20.967 8 TT_DG9DC10:DG7DC8_PP T 9 ? P 8 ? T 10 ? P 7 ? 1 A DC 10 1_555 B DG 7 1_555 A DA 11 1_555 B DT 6 1_555 -0.222 -0.487 3.164 -1.320 7.303 45.571 -1.220 0.175 3.061 9.354 1.691 46.140 9 TT_DC10DA11:DT6DG7_PP T 10 ? P 7 ? T 11 ? P 6 ? 1 A DA 11 1_555 B DT 6 1_555 A DT 12 1_555 B DA 5 1_555 0.396 -0.395 3.355 -0.034 -4.514 32.140 0.113 -0.714 3.377 -8.103 0.060 32.448 10 TT_DA11DT12:DA5DT6_PP T 11 ? P 6 ? T 12 ? P 5 ? 1 A DT 12 1_555 B DA 5 1_555 A DC 13 1_555 B DG 4 1_555 0.122 -0.369 3.089 -1.841 0.323 38.808 -0.592 -0.394 3.077 0.486 2.769 38.852 11 TT_DT12DC13:DG4DA5_PP T 12 ? P 5 ? T 13 ? P 4 ? 1 A DC 13 1_555 B DG 4 1_555 A DA 14 1_555 B DT 3 1_555 -0.568 -0.193 3.167 -2.733 8.113 32.418 -1.629 0.550 3.067 14.225 4.791 33.500 12 TT_DC13DA14:DT3DG4_PP T 13 ? P 4 ? T 14 ? P 3 ? 1 A DA 14 1_555 B DT 3 1_555 A DG 15 1_555 B DC 2 1_555 0.389 -0.592 3.414 -2.002 -2.127 34.767 -0.650 -0.966 3.416 -3.553 3.343 34.886 13 TT_DA14DG15:DC2DT3_PP T 14 ? P 3 ? T 15 ? P 2 ? 1 A DG 15 1_555 B DC 2 1_555 A DC 16 1_555 B DG 1 1_555 0.015 -0.376 3.257 -0.692 2.394 29.197 -1.255 -0.178 3.216 4.739 1.370 29.301 14 TT_DG15DC16:DG1DC2_PP T 15 ? P 2 ? T 16 ? P 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 'SODIUM ION' NA 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 9ICJ _pdbx_initial_refinement_model.details 'PDB ENTRY 9ICJ' #