HEADER HYDROLASE/HYDROLASE INHIBITOR 29-JUL-99 1C8T TITLE HUMAN STROMELYSIN-1 (E202Q) CATALYTIC DOMAIN COMPLEXED WITH RO-26-2812 COMPND MOL_ID: 1; COMPND 2 MOLECULE: STROMELYSIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 EC: 3.4.24.17; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: GIGIVAL FIBROBLASTS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEMEX-2 KEYWDS PROTEIN-INHIBITOR COMPLEX, MUTANT PROTEIN, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.L.STEELE,O.EL-KABBANI,P.DUNTEN,R.L.CROWTHER REVDAT 6 13-MAR-24 1C8T 1 COMPND SOURCE REVDAT 5 07-FEB-24 1C8T 1 REMARK REVDAT 4 03-NOV-21 1C8T 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1C8T 1 VERSN REVDAT 2 01-APR-03 1C8T 1 JRNL REVDAT 1 19-JUL-00 1C8T 0 JRNL AUTH D.L.STEELE,O.EL-KABBANI,P.DUNTEN,L.J.WINDSOR,R.U.KAMMLOTT, JRNL AUTH 2 R.L.CROWTHER,C.MICHOUD,J.A.ENGLER,J.J.BIRKTOFT JRNL TITL EXPRESSION, CHARACTERIZATION AND STRUCTURE DETERMINATION OF JRNL TITL 2 AN ACTIVE SITE MUTANT (GLU202-GLN) OF MINI-STROMELYSIN-1. JRNL REF PROTEIN ENG. V. 13 397 2000 JRNL REFN ISSN 0269-2139 JRNL PMID 10877850 JRNL DOI 10.1093/PROTEIN/13.6.397 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 9679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2650 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 71 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1C8T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-99. REMARK 100 THE DEPOSITION ID IS D_1000009435. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-95 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SDMS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SDMS REMARK 200 DATA SCALING SOFTWARE : SDMS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15629 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, POTASSIUM CHLORIDE, CALCIUM REMARK 280 CHLORIDE, CACODYLATE, PH 7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 60.05000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.45000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.45000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 60.05000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -168.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 93 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 100 NE - CZ - NH1 ANGL. DEV. = -5.3 DEGREES REMARK 500 ASP A 107 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 LEU A 108 CB - CG - CD1 ANGL. DEV. = -10.3 DEGREES REMARK 500 TYR A 136 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 141 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 149 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP A 153 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 158 CB - CG - OD2 ANGL. DEV. = 8.5 DEGREES REMARK 500 HIS A 166 CB - CG - CD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 251 N - CA - CB ANGL. DEV. = -11.7 DEGREES REMARK 500 PHE B 157 CB - CG - CD1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ASP B 181 CB - CG - OD1 ANGL. DEV. = 13.2 DEGREES REMARK 500 ASP B 228 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG B 231 CD - NE - CZ ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG B 231 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 149 -150.94 53.07 REMARK 500 ASN A 162 -117.72 54.86 REMARK 500 ASP A 189 -142.16 -94.83 REMARK 500 THR A 227 177.20 -56.95 REMARK 500 ASP A 228 -12.28 71.29 REMARK 500 LEU A 229 -61.64 15.69 REMARK 500 THR A 230 -9.04 -54.97 REMARK 500 PRO A 250 -63.81 -25.67 REMARK 500 ASP A 251 74.58 9.22 REMARK 500 PRO B 87 105.44 -46.71 REMARK 500 GLU B 137 161.25 172.36 REMARK 500 ARG B 149 -140.82 50.10 REMARK 500 HIS B 151 25.21 -155.71 REMARK 500 ASN B 162 -113.20 32.93 REMARK 500 ALA B 165 -174.37 -175.67 REMARK 500 ASP B 189 -117.59 -89.42 REMARK 500 GLN B 236 7.59 -68.33 REMARK 500 PRO B 250 -16.73 -13.65 REMARK 500 ASP B 251 17.95 101.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 264 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 107 OD1 REMARK 620 2 ASP A 107 OD2 52.2 REMARK 620 3 ASP A 182 OD2 84.7 101.5 REMARK 620 4 ASP A 182 O 135.4 167.4 89.9 REMARK 620 5 GLU A 184 O 68.5 109.4 107.9 71.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 263 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 141 O REMARK 620 2 GLY A 173 O 176.4 REMARK 620 3 ASN A 175 O 91.3 85.2 REMARK 620 4 ASP A 177 OD1 72.7 106.5 90.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 261 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 151 NE2 REMARK 620 2 ASP A 153 OD1 105.3 REMARK 620 3 HIS A 166 NE2 132.8 109.2 REMARK 620 4 HIS A 179 ND1 98.3 87.1 114.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 262 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 158 OD1 REMARK 620 2 GLY A 159 O 86.6 REMARK 620 3 GLY A 161 O 79.2 94.8 REMARK 620 4 VAL A 163 O 95.7 173.8 80.0 REMARK 620 5 ASP A 181 OD2 102.5 92.3 172.8 92.8 REMARK 620 6 GLU A 184 OE2 151.2 98.9 72.2 76.3 105.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 260 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 201 NE2 REMARK 620 2 HIS A 205 NE2 114.3 REMARK 620 3 HIS A 211 NE2 121.3 103.7 REMARK 620 4 TR1 A 265 SG 107.8 114.3 94.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 264 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 42 O REMARK 620 2 ASP B 107 OD2 61.7 REMARK 620 3 ASP B 107 OD1 108.7 48.1 REMARK 620 4 ASP B 182 O 85.4 146.4 157.7 REMARK 620 5 ASP B 182 OD2 79.8 88.9 87.5 77.9 REMARK 620 6 GLU B 184 O 170.9 124.1 78.6 89.4 106.5 REMARK 620 7 GLN B 185 OE1 101.2 75.6 74.6 120.6 161.5 75.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 263 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 53 O REMARK 620 2 ASP B 141 O 89.6 REMARK 620 3 GLY B 173 O 86.0 172.1 REMARK 620 4 ASN B 175 O 174.7 94.8 89.4 REMARK 620 5 ASP B 177 OD1 111.5 83.7 104.0 72.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 261 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 151 NE2 REMARK 620 2 ASP B 153 OD1 111.9 REMARK 620 3 HIS B 166 NE2 118.2 111.2 REMARK 620 4 HIS B 179 ND1 116.4 85.7 108.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 262 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 158 OD1 REMARK 620 2 GLY B 159 O 79.1 REMARK 620 3 GLY B 161 O 89.1 93.0 REMARK 620 4 VAL B 163 O 106.8 173.6 89.6 REMARK 620 5 ASP B 181 OD2 99.9 83.8 169.7 92.6 REMARK 620 6 GLU B 184 OE2 154.8 75.8 89.8 98.4 79.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 260 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 201 NE2 REMARK 620 2 HIS B 205 NE2 104.1 REMARK 620 3 HIS B 211 NE2 111.8 99.2 REMARK 620 4 TR1 B 265 SG 106.6 111.0 122.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 263 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 264 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TR1 A 265 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TR1 B 265 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SLM RELATED DB: PDB REMARK 900 STROMELYSIN-1 WITH PRO-PEPTIDE REMARK 900 RELATED ID: 1HFS RELATED DB: PDB REMARK 900 STROMELYSIN-1 WITH INHIBITOR REMARK 900 RELATED ID: 1C3I RELATED DB: PDB DBREF 1C8T A 86 252 UNP P08254 MMP3_HUMAN 103 269 DBREF 1C8T B 86 252 UNP P08254 MMP3_HUMAN 103 269 SEQADV 1C8T GLN A 202 UNP P08254 GLU 219 ENGINEERED MUTATION SEQADV 1C8T GLN B 202 UNP P08254 GLU 219 ENGINEERED MUTATION SEQADV 1C8T PRO A 252 UNP P08254 SER 269 CONFLICT SEQADV 1C8T PRO B 252 UNP P08254 SER 269 CONFLICT SEQRES 1 A 167 PHE PRO GLY ILE PRO LYS TRP ARG LYS THR HIS LEU THR SEQRES 2 A 167 TYR ARG ILE VAL ASN TYR THR PRO ASP LEU PRO LYS ASP SEQRES 3 A 167 ALA VAL ASP SER ALA VAL GLU LYS ALA LEU LYS VAL TRP SEQRES 4 A 167 GLU GLU VAL THR PRO LEU THR PHE SER ARG LEU TYR GLU SEQRES 5 A 167 GLY GLU ALA ASP ILE MET ILE SER PHE ALA VAL ARG GLU SEQRES 6 A 167 HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO GLY ASN VAL SEQRES 7 A 167 LEU ALA HIS ALA TYR ALA PRO GLY PRO GLY ILE ASN GLY SEQRES 8 A 167 ASP ALA HIS PHE ASP ASP ASP GLU GLN TRP THR LYS ASP SEQRES 9 A 167 THR THR GLY THR ASN LEU PHE LEU VAL ALA ALA HIS GLN SEQRES 10 A 167 ILE GLY HIS SER LEU GLY LEU PHE HIS SER ALA ASN THR SEQRES 11 A 167 GLU ALA LEU MET TYR PRO LEU TYR HIS SER LEU THR ASP SEQRES 12 A 167 LEU THR ARG PHE ARG LEU SER GLN ASP ASP ILE ASN GLY SEQRES 13 A 167 ILE GLN SER LEU TYR GLY PRO PRO PRO ASP PRO SEQRES 1 B 167 PHE PRO GLY ILE PRO LYS TRP ARG LYS THR HIS LEU THR SEQRES 2 B 167 TYR ARG ILE VAL ASN TYR THR PRO ASP LEU PRO LYS ASP SEQRES 3 B 167 ALA VAL ASP SER ALA VAL GLU LYS ALA LEU LYS VAL TRP SEQRES 4 B 167 GLU GLU VAL THR PRO LEU THR PHE SER ARG LEU TYR GLU SEQRES 5 B 167 GLY GLU ALA ASP ILE MET ILE SER PHE ALA VAL ARG GLU SEQRES 6 B 167 HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO GLY ASN VAL SEQRES 7 B 167 LEU ALA HIS ALA TYR ALA PRO GLY PRO GLY ILE ASN GLY SEQRES 8 B 167 ASP ALA HIS PHE ASP ASP ASP GLU GLN TRP THR LYS ASP SEQRES 9 B 167 THR THR GLY THR ASN LEU PHE LEU VAL ALA ALA HIS GLN SEQRES 10 B 167 ILE GLY HIS SER LEU GLY LEU PHE HIS SER ALA ASN THR SEQRES 11 B 167 GLU ALA LEU MET TYR PRO LEU TYR HIS SER LEU THR ASP SEQRES 12 B 167 LEU THR ARG PHE ARG LEU SER GLN ASP ASP ILE ASN GLY SEQRES 13 B 167 ILE GLN SER LEU TYR GLY PRO PRO PRO ASP PRO HET ZN A 260 1 HET ZN A 261 1 HET CA A 262 1 HET CA A 263 1 HET CA A 264 1 HET TR1 A 265 32 HET ZN B 260 1 HET ZN B 261 1 HET CA B 262 1 HET CA B 263 1 HET CA B 264 1 HET TR1 B 265 32 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM TR1 2-(2-{2-[(BIPHENYL-4-YLMETHYL)-AMINO]-3-MERCAPTO- HETNAM 2 TR1 PENTANOYLAMINO}-ACETYLAMINO)-3-METHYL-BUTYRIC ACID HETNAM 3 TR1 METHYL ESTER FORMUL 3 ZN 4(ZN 2+) FORMUL 5 CA 6(CA 2+) FORMUL 8 TR1 2(C24 H31 N3 O4 S) FORMUL 15 HOH *71(H2 O) HELIX 1 1 PRO A 109 GLU A 126 1 18 HELIX 2 2 LEU A 195 LEU A 207 1 13 HELIX 3 3 ASP A 228 PHE A 232 5 5 HELIX 4 4 SER A 235 GLY A 247 1 13 HELIX 5 5 PRO B 109 VAL B 127 1 19 HELIX 6 6 LEU B 195 GLY B 208 1 14 HELIX 7 7 SER B 235 GLY B 247 1 13 SHEET 1 A 5 THR A 131 ARG A 134 0 SHEET 2 A 5 HIS A 96 ILE A 101 1 N LEU A 97 O THR A 131 SHEET 3 A 5 ILE A 142 ALA A 147 1 N ILE A 142 O THR A 98 SHEET 4 A 5 ALA A 178 ASP A 181 1 N ALA A 178 O MET A 143 SHEET 5 A 5 ALA A 165 ALA A 167 -1 O HIS A 166 N HIS A 179 SHEET 1 B 2 TRP A 186 THR A 187 0 SHEET 2 B 2 THR A 193 ASN A 194 1 O THR A 193 N THR A 187 SHEET 1 C 5 THR B 131 ARG B 134 0 SHEET 2 C 5 HIS B 96 ILE B 101 1 N LEU B 97 O THR B 131 SHEET 3 C 5 ILE B 142 ALA B 147 1 N ILE B 142 O THR B 98 SHEET 4 C 5 ALA B 178 ASP B 181 1 O ALA B 178 N SER B 145 SHEET 5 C 5 ALA B 165 ALA B 167 -1 O HIS B 166 N HIS B 179 SHEET 1 D 2 TRP B 186 THR B 187 0 SHEET 2 D 2 THR B 193 ASN B 194 1 O THR B 193 N THR B 187 LINK OD1 ASP A 107 CA CA A 264 1555 1555 2.33 LINK OD2 ASP A 107 CA CA A 264 1555 1555 2.76 LINK O ASP A 141 CA CA A 263 1555 1555 2.60 LINK NE2 HIS A 151 ZN ZN A 261 1555 1555 2.16 LINK OD1 ASP A 153 ZN ZN A 261 1555 1555 2.15 LINK OD1 ASP A 158 CA CA A 262 1555 1555 2.35 LINK O GLY A 159 CA CA A 262 1555 1555 2.08 LINK O GLY A 161 CA CA A 262 1555 1555 2.52 LINK O VAL A 163 CA CA A 262 1555 1555 2.35 LINK NE2 HIS A 166 ZN ZN A 261 1555 1555 2.16 LINK O GLY A 173 CA CA A 263 1555 1555 2.11 LINK O ASN A 175 CA CA A 263 1555 1555 2.19 LINK OD1 ASP A 177 CA CA A 263 1555 1555 2.40 LINK ND1 HIS A 179 ZN ZN A 261 1555 1555 1.98 LINK OD2 ASP A 181 CA CA A 262 1555 1555 2.31 LINK OD2 ASP A 182 CA CA A 264 1555 1555 2.67 LINK O ASP A 182 CA CA A 264 1555 1555 2.33 LINK OE2 GLU A 184 CA CA A 262 1555 1555 2.28 LINK O GLU A 184 CA CA A 264 1555 1555 2.75 LINK NE2 HIS A 201 ZN ZN A 260 1555 1555 2.13 LINK NE2 HIS A 205 ZN ZN A 260 1555 1555 2.36 LINK NE2 HIS A 211 ZN ZN A 260 1555 1555 1.89 LINK ZN ZN A 260 SG TR1 A 265 1555 1555 2.45 LINK O HOH B 42 CA CA B 264 1555 1555 2.47 LINK O HOH B 53 CA CA B 263 1555 1555 2.17 LINK OD2 ASP B 107 CA CA B 264 1555 1555 2.90 LINK OD1 ASP B 107 CA CA B 264 1555 1555 2.34 LINK O ASP B 141 CA CA B 263 1555 1555 2.28 LINK NE2 HIS B 151 ZN ZN B 261 1555 1555 2.36 LINK OD1 ASP B 153 ZN ZN B 261 1555 1555 2.19 LINK OD1 ASP B 158 CA CA B 262 1555 1555 2.59 LINK O GLY B 159 CA CA B 262 1555 1555 2.35 LINK O GLY B 161 CA CA B 262 1555 1555 2.46 LINK O VAL B 163 CA CA B 262 1555 1555 1.99 LINK NE2 HIS B 166 ZN ZN B 261 1555 1555 2.14 LINK O GLY B 173 CA CA B 263 1555 1555 2.18 LINK O ASN B 175 CA CA B 263 1555 1555 2.16 LINK OD1 ASP B 177 CA CA B 263 1555 1555 2.39 LINK ND1 HIS B 179 ZN ZN B 261 1555 1555 2.28 LINK OD2 ASP B 181 CA CA B 262 1555 1555 2.46 LINK O ASP B 182 CA CA B 264 1555 1555 1.96 LINK OD2 ASP B 182 CA CA B 264 1555 1555 2.74 LINK OE2 GLU B 184 CA CA B 262 1555 1555 2.19 LINK O GLU B 184 CA CA B 264 1555 1555 2.47 LINK OE1 GLN B 185 CA CA B 264 1555 1555 2.90 LINK NE2 HIS B 201 ZN ZN B 260 1555 1555 2.14 LINK NE2 HIS B 205 ZN ZN B 260 1555 1555 2.01 LINK NE2 HIS B 211 ZN ZN B 260 1555 1555 2.19 LINK ZN ZN B 260 SG TR1 B 265 1555 1555 1.78 SITE 1 AC1 4 HIS B 201 HIS B 205 HIS B 211 TR1 B 265 SITE 1 AC2 4 HIS B 151 ASP B 153 HIS B 166 HIS B 179 SITE 1 AC3 6 ASP B 158 GLY B 159 GLY B 161 VAL B 163 SITE 2 AC3 6 ASP B 181 GLU B 184 SITE 1 AC4 5 HOH B 53 ASP B 141 GLY B 173 ASN B 175 SITE 2 AC4 5 ASP B 177 SITE 1 AC5 5 HOH B 42 ASP B 107 ASP B 182 GLU B 184 SITE 2 AC5 5 GLN B 185 SITE 1 AC6 4 HIS A 201 HIS A 205 HIS A 211 TR1 A 265 SITE 1 AC7 4 HIS A 151 ASP A 153 HIS A 166 HIS A 179 SITE 1 AC8 6 ASP A 158 GLY A 159 GLY A 161 VAL A 163 SITE 2 AC8 6 ASP A 181 GLU A 184 SITE 1 AC9 4 ASP A 141 GLY A 173 ASN A 175 ASP A 177 SITE 1 BC1 3 ASP A 107 ASP A 182 GLU A 184 SITE 1 BC2 20 ASN A 162 VAL A 163 LEU A 164 ALA A 165 SITE 2 BC2 20 LEU A 197 HIS A 201 GLN A 202 HIS A 211 SITE 3 BC2 20 ALA A 217 LEU A 218 TYR A 220 PRO A 221 SITE 4 BC2 20 LEU A 222 TYR A 223 HIS A 224 ZN A 260 SITE 5 BC2 20 PRO B 87 ALA B 213 THR B 215 TYR B 220 SITE 1 BC3 19 HOH A 41 PRO A 87 THR A 215 GLU A 216 SITE 2 BC3 19 ASN B 162 LEU B 164 VAL B 198 HIS B 201 SITE 3 BC3 19 GLN B 202 HIS B 205 HIS B 211 ALA B 217 SITE 4 BC3 19 LEU B 218 TYR B 220 PRO B 221 LEU B 222 SITE 5 BC3 19 TYR B 223 HIS B 224 ZN B 260 CRYST1 120.100 47.000 54.900 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008330 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018210 0.00000