data_1CA6 # _entry.id 1CA6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1CA6 pdb_00001ca6 10.2210/pdb1ca6/pdb NDB PD0120 ? ? RCSB RCSB000524 ? ? WWPDB D_1000000524 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1CA6 _pdbx_database_status.recvd_initial_deposition_date 1999-02-23 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Su, S.' 1 'Gao, Y.-G.' 2 'Robinson, H.' 3 'Shriver, J.W.' 4 'Wang, A.H.-J.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal structures of the chromosomal proteins Sso7d/Sac7d bound to DNA containing T-G mismatched base-pairs' J.Mol.Biol. 303 395 403 2000 JMOBAK UK 0022-2836 0070 ? 11031116 10.1006/jmbi.2000.4112 1 'The hyperthermophile chromosomal protein Sac7d sharply kinks DNA.' Nature 392 202 205 1998 NATUAS UK 0028-0836 0006 ? 9515968 10.1038/32455 2 'The crystal structure of the hyperthermophile chromosomal protein Sso7d bound to DNA.' Nat.Struct.Biol. 5 782 786 1998 NSBIEW US 1072-8368 2024 ? 9731772 10.1038/1822 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Su, S.' 1 ? primary 'Gao, Y.-G.' 2 ? primary 'Robinson, H.' 3 ? primary 'Liaw, Y.C.' 4 ? primary 'Edmondson, S.P.' 5 ? primary 'Shriver, J.W.' 6 ? primary 'Wang, A.H.-J.' 7 ? 1 'Robinson, H.' 8 ? 1 'Gao, Y.G.' 9 ? 1 'McCrary, B.S.' 10 ? 1 'Edmondson, S.P.' 11 ? 1 'Shriver, J.W.' 12 ? 1 'Wang, A.H.' 13 ? 2 'Gao, Y.G.' 14 ? 2 'Su, S.Y.' 15 ? 2 'Robinson, H.' 16 ? 2 'Padmanabhan, S.' 17 ? 2 'Lim, L.' 18 ? 2 'McCrary, B.S.' 19 ? 2 'Edmondson, S.P.' 20 ? 2 'Shriver, J.W.' 21 ? 2 'Wang, A.H.' 22 ? # _cell.entry_id 1CA6 _cell.length_a 50.470 _cell.length_b 75.890 _cell.length_c 35.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1CA6 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*TP*GP*AP*TP*CP*GP*C)-3'" 2442.616 2 ? ? ? ? 2 polymer nat 'CHROMOSOMAL PROTEIN SAC7D' 7626.914 1 ? ? ? ? 3 water nat water 18.015 72 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DT)(DG)(DA)(DT)(DC)(DG)(DC)' GTGATCGC B,C ? 2 'polypeptide(L)' no no MVKVKFKYKGEEKEVDTSKIKKVWRVGKMVSFTYDDNGKTGRGAVSEKDAPKELLDMLARAEREKK MVKVKFKYKGEEKEVDTSKIKKVWRVGKMVSFTYDDNGKTGRGAVSEKDAPKELLDMLARAEREKK A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DG n 1 4 DA n 1 5 DT n 1 6 DC n 1 7 DG n 1 8 DC n 2 1 MET n 2 2 VAL n 2 3 LYS n 2 4 VAL n 2 5 LYS n 2 6 PHE n 2 7 LYS n 2 8 TYR n 2 9 LYS n 2 10 GLY n 2 11 GLU n 2 12 GLU n 2 13 LYS n 2 14 GLU n 2 15 VAL n 2 16 ASP n 2 17 THR n 2 18 SER n 2 19 LYS n 2 20 ILE n 2 21 LYS n 2 22 LYS n 2 23 VAL n 2 24 TRP n 2 25 ARG n 2 26 VAL n 2 27 GLY n 2 28 LYS n 2 29 MET n 2 30 VAL n 2 31 SER n 2 32 PHE n 2 33 THR n 2 34 TYR n 2 35 ASP n 2 36 ASP n 2 37 ASN n 2 38 GLY n 2 39 LYS n 2 40 THR n 2 41 GLY n 2 42 ARG n 2 43 GLY n 2 44 ALA n 2 45 VAL n 2 46 SER n 2 47 GLU n 2 48 LYS n 2 49 ASP n 2 50 ALA n 2 51 PRO n 2 52 LYS n 2 53 GLU n 2 54 LEU n 2 55 LEU n 2 56 ASP n 2 57 MET n 2 58 LEU n 2 59 ALA n 2 60 ARG n 2 61 ALA n 2 62 GLU n 2 63 ARG n 2 64 GLU n 2 65 LYS n 2 66 LYS n # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Sulfolobus acidocaldarius' _entity_src_nat.pdbx_ncbi_taxonomy_id 2285 _entity_src_nat.genus Sulfolobus _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP DN71_SULAC 2 P13123 ? ? ? 2 PDB 1CA6 1 1CA6 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1CA6 A 2 ? 66 ? P13123 1 ? 65 ? 2 66 2 2 1CA6 B 1 ? 8 ? 1CA6 101 ? 108 ? 101 108 3 2 1CA6 C 1 ? 8 ? 1CA6 109 ? 116 ? 109 116 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1CA6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.73 _exptl_crystal.density_percent_sol 53 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'pH 6.5, VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS' _diffrn_detector.pdbx_collection_date 1996-09-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1CA6 _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40 _reflns.d_resolution_high 1.93 _reflns.number_obs 8013 _reflns.number_all ? _reflns.percent_possible_obs 84.4 _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 29.8 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 1CA6 _refine.ls_number_reflns_obs 5954 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2 _refine.pdbx_data_cutoff_high_absF 10000000 _refine.pdbx_data_cutoff_low_absF 0.001 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 2.2 _refine.ls_percent_reflns_obs 84.4 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.197 _refine.ls_R_factor_R_free 0.257 _refine.ls_R_factor_R_free_error 0.015 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 309 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 41.4 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1AZP' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1CA6 _refine_analyze.Luzzati_coordinate_error_obs 0.29 _refine_analyze.Luzzati_sigma_a_obs 0.41 _refine_analyze.Luzzati_d_res_low_obs 5 _refine_analyze.Luzzati_coordinate_error_free 0.37 _refine_analyze.Luzzati_sigma_a_free 0.42 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 533 _refine_hist.pdbx_number_atoms_nucleic_acid 324 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 72 _refine_hist.number_atoms_total 929 _refine_hist.d_res_high 2.2 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.6 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 24.3 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 3.53 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 3.32 1.50 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 5.50 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 4.36 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 6.32 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.20 _refine_ls_shell.d_res_low 2.33 _refine_ls_shell.number_reflns_R_work 817 _refine_ls_shell.R_factor_R_work 0.353 _refine_ls_shell.percent_reflns_obs 74.5 _refine_ls_shell.R_factor_R_free 0.402 _refine_ls_shell.R_factor_R_free_error 0.063 _refine_ls_shell.percent_reflns_R_free 4.8 _refine_ls_shell.number_reflns_R_free 41 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARHCSDX.PRO TOPH11.WAT 'X-RAY DIFFRACTION' 2 PARAM_NDBX_HIGH.DNA TOP_NDBX.DNA 'X-RAY DIFFRACTION' 3 PARAM11.WAT TOPHCSDX.PRO 'X-RAY DIFFRACTION' # _struct.entry_id 1CA6 _struct.title 'INTERCALATION SITE OF HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SSO7D/SAC7D BOUND TO DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1CA6 _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN/DNA' _struct_keywords.text 'HYPERTHERMOPHILE, CHROMOSOMAL PROTEIN, SSO7D, SAC7D, DNA BINDING, STRUCTURAL PROTEIN-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id PRO _struct_conf.beg_label_asym_id C _struct_conf.beg_label_seq_id 51 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ARG _struct_conf.end_label_asym_id C _struct_conf.end_label_seq_id 63 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id PRO _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 51 _struct_conf.end_auth_comp_id ARG _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 63 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 8 N3 ? ? B DG 101 C DC 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 8 O2 ? ? B DG 101 C DC 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 8 N4 ? ? B DG 101 C DC 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DG 7 O6 ? ? B DT 102 C DG 115 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A DT 2 O2 ? ? ? 1_555 B DG 7 N1 ? ? B DT 102 C DG 115 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 6 N3 ? ? B DG 103 C DC 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 6 O2 ? ? B DG 103 C DC 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 6 N4 ? ? B DG 103 C DC 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 5 N3 ? ? B DA 104 C DT 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 5 O4 ? ? B DA 104 C DT 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 4 N1 ? ? B DT 105 C DA 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 4 N6 ? ? B DT 105 C DA 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 3 N1 ? ? B DC 106 C DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 3 O6 ? ? B DC 106 C DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 3 N2 ? ? B DC 106 C DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DT 2 O2 ? ? B DG 107 C DT 110 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog17 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DT 2 N3 ? ? B DG 107 C DT 110 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 1 N1 ? ? B DC 108 C DG 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 1 O6 ? ? B DC 108 C DG 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 1 N2 ? ? B DC 108 C DG 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS C 3 ? TYR C 8 ? LYS A 3 TYR A 8 A 2 GLU C 11 ? ASP C 16 ? GLU A 11 ASP A 16 B 1 THR C 40 ? SER C 46 ? THR A 40 SER A 46 B 2 MET C 29 ? ASP C 35 ? MET A 29 ASP A 35 B 3 ILE C 20 ? VAL C 26 ? ILE A 20 VAL A 26 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL C 4 ? O VAL A 4 N VAL C 15 ? N VAL A 15 B 1 2 O GLY C 41 ? O GLY A 41 N TYR C 34 ? N TYR A 34 B 2 3 O MET C 29 ? O MET A 29 N VAL C 26 ? N VAL A 26 # _database_PDB_matrix.entry_id 1CA6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1CA6 _atom_sites.fract_transf_matrix[1][1] 0.019814 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013177 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028571 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _database_PDB_caveat.text ;C3' of C108, chain B has incorrect chirality ; # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 101 101 DG G B . n A 1 2 DT 2 102 102 DT T B . n A 1 3 DG 3 103 103 DG G B . n A 1 4 DA 4 104 104 DA A B . n A 1 5 DT 5 105 105 DT T B . n A 1 6 DC 6 106 106 DC C B . n A 1 7 DG 7 107 107 DG G B . n A 1 8 DC 8 108 108 DC C B . n B 1 1 DG 1 109 109 DG G C . n B 1 2 DT 2 110 110 DT T C . n B 1 3 DG 3 111 111 DG G C . n B 1 4 DA 4 112 112 DA A C . n B 1 5 DT 5 113 113 DT T C . n B 1 6 DC 6 114 114 DC C C . n B 1 7 DG 7 115 115 DG G C . n B 1 8 DC 8 116 116 DC C C . n C 2 1 MET 1 1 1 MET MET A . n C 2 2 VAL 2 2 2 VAL VAL A . n C 2 3 LYS 3 3 3 LYS LYS A . n C 2 4 VAL 4 4 4 VAL VAL A . n C 2 5 LYS 5 5 5 LYS LYS A . n C 2 6 PHE 6 6 6 PHE PHE A . n C 2 7 LYS 7 7 7 LYS LYS A . n C 2 8 TYR 8 8 8 TYR TYR A . n C 2 9 LYS 9 9 9 LYS LYS A . n C 2 10 GLY 10 10 10 GLY GLY A . n C 2 11 GLU 11 11 11 GLU GLU A . n C 2 12 GLU 12 12 12 GLU GLU A . n C 2 13 LYS 13 13 13 LYS LYS A . n C 2 14 GLU 14 14 14 GLU GLU A . n C 2 15 VAL 15 15 15 VAL VAL A . n C 2 16 ASP 16 16 16 ASP ASP A . n C 2 17 THR 17 17 17 THR THR A . n C 2 18 SER 18 18 18 SER SER A . n C 2 19 LYS 19 19 19 LYS LYS A . n C 2 20 ILE 20 20 20 ILE ILE A . n C 2 21 LYS 21 21 21 LYS LYS A . n C 2 22 LYS 22 22 22 LYS LYS A . n C 2 23 VAL 23 23 23 VAL VAL A . n C 2 24 TRP 24 24 24 TRP TRP A . n C 2 25 ARG 25 25 25 ARG ARG A . n C 2 26 VAL 26 26 26 VAL VAL A . n C 2 27 GLY 27 27 27 GLY GLY A . n C 2 28 LYS 28 28 28 LYS LYS A . n C 2 29 MET 29 29 29 MET MET A . n C 2 30 VAL 30 30 30 VAL VAL A . n C 2 31 SER 31 31 31 SER SER A . n C 2 32 PHE 32 32 32 PHE PHE A . n C 2 33 THR 33 33 33 THR THR A . n C 2 34 TYR 34 34 34 TYR TYR A . n C 2 35 ASP 35 35 35 ASP ASP A . n C 2 36 ASP 36 36 36 ASP ASP A . n C 2 37 ASN 37 37 37 ASN ASN A . n C 2 38 GLY 38 38 38 GLY GLY A . n C 2 39 LYS 39 39 39 LYS LYS A . n C 2 40 THR 40 40 40 THR THR A . n C 2 41 GLY 41 41 41 GLY GLY A . n C 2 42 ARG 42 42 42 ARG ARG A . n C 2 43 GLY 43 43 43 GLY GLY A . n C 2 44 ALA 44 44 44 ALA ALA A . n C 2 45 VAL 45 45 45 VAL VAL A . n C 2 46 SER 46 46 46 SER SER A . n C 2 47 GLU 47 47 47 GLU GLU A . n C 2 48 LYS 48 48 48 LYS LYS A . n C 2 49 ASP 49 49 49 ASP ASP A . n C 2 50 ALA 50 50 50 ALA ALA A . n C 2 51 PRO 51 51 51 PRO PRO A . n C 2 52 LYS 52 52 52 LYS LYS A . n C 2 53 GLU 53 53 53 GLU GLU A . n C 2 54 LEU 54 54 54 LEU LEU A . n C 2 55 LEU 55 55 55 LEU LEU A . n C 2 56 ASP 56 56 56 ASP ASP A . n C 2 57 MET 57 57 57 MET MET A . n C 2 58 LEU 58 58 58 LEU LEU A . n C 2 59 ALA 59 59 59 ALA ALA A . n C 2 60 ARG 60 60 60 ARG ARG A . n C 2 61 ALA 61 61 61 ALA ALA A . n C 2 62 GLU 62 62 62 GLU GLU A . n C 2 63 ARG 63 63 63 ARG ARG A . n C 2 64 GLU 64 64 64 GLU GLU A . n C 2 65 LYS 65 65 65 LYS LYS A . n C 2 66 LYS 66 66 66 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 HOH 1 203 203 HOH HOH B . D 3 HOH 2 216 216 HOH HOH B . D 3 HOH 3 218 218 HOH HOH B . D 3 HOH 4 221 221 HOH HOH B . D 3 HOH 5 223 223 HOH HOH B . D 3 HOH 6 228 228 HOH HOH B . D 3 HOH 7 229 229 HOH HOH B . D 3 HOH 8 230 230 HOH HOH B . D 3 HOH 9 231 231 HOH HOH B . D 3 HOH 10 239 239 HOH HOH B . D 3 HOH 11 240 240 HOH HOH B . D 3 HOH 12 242 242 HOH HOH B . D 3 HOH 13 244 244 HOH HOH B . D 3 HOH 14 247 247 HOH HOH B . D 3 HOH 15 255 255 HOH HOH B . D 3 HOH 16 262 262 HOH HOH B . D 3 HOH 17 263 263 HOH HOH B . D 3 HOH 18 267 267 HOH HOH B . D 3 HOH 19 274 274 HOH HOH B . E 3 HOH 1 201 201 HOH HOH C . E 3 HOH 2 210 210 HOH HOH C . E 3 HOH 3 215 215 HOH HOH C . E 3 HOH 4 224 224 HOH HOH C . E 3 HOH 5 225 225 HOH HOH C . E 3 HOH 6 233 233 HOH HOH C . E 3 HOH 7 241 241 HOH HOH C . E 3 HOH 8 246 246 HOH HOH C . E 3 HOH 9 248 248 HOH HOH C . E 3 HOH 10 253 253 HOH HOH C . E 3 HOH 11 256 256 HOH HOH C . E 3 HOH 12 261 261 HOH HOH C . E 3 HOH 13 264 264 HOH HOH C . E 3 HOH 14 269 269 HOH HOH C . E 3 HOH 15 271 271 HOH HOH C . E 3 HOH 16 273 273 HOH HOH C . F 3 HOH 1 202 202 HOH HOH A . F 3 HOH 2 204 204 HOH HOH A . F 3 HOH 3 205 205 HOH HOH A . F 3 HOH 4 207 207 HOH HOH A . F 3 HOH 5 208 208 HOH HOH A . F 3 HOH 6 209 209 HOH HOH A . F 3 HOH 7 211 211 HOH HOH A . F 3 HOH 8 212 212 HOH HOH A . F 3 HOH 9 213 213 HOH HOH A . F 3 HOH 10 214 214 HOH HOH A . F 3 HOH 11 217 217 HOH HOH A . F 3 HOH 12 219 219 HOH HOH A . F 3 HOH 13 220 220 HOH HOH A . F 3 HOH 14 222 222 HOH HOH A . F 3 HOH 15 226 226 HOH HOH A . F 3 HOH 16 227 227 HOH HOH A . F 3 HOH 17 232 232 HOH HOH A . F 3 HOH 18 235 235 HOH HOH A . F 3 HOH 19 236 236 HOH HOH A . F 3 HOH 20 237 237 HOH HOH A . F 3 HOH 21 238 238 HOH HOH A . F 3 HOH 22 243 243 HOH HOH A . F 3 HOH 23 245 245 HOH HOH A . F 3 HOH 24 249 249 HOH HOH A . F 3 HOH 25 250 250 HOH HOH A . F 3 HOH 26 251 251 HOH HOH A . F 3 HOH 27 252 252 HOH HOH A . F 3 HOH 28 254 254 HOH HOH A . F 3 HOH 29 257 257 HOH HOH A . F 3 HOH 30 258 258 HOH HOH A . F 3 HOH 31 259 259 HOH HOH A . F 3 HOH 32 260 260 HOH HOH A . F 3 HOH 33 265 265 HOH HOH A . F 3 HOH 34 266 266 HOH HOH A . F 3 HOH 35 268 268 HOH HOH A . F 3 HOH 36 270 270 HOH HOH A . F 3 HOH 37 272 272 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-02-23 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-12-28 5 'Structure model' 1 4 2017-10-04 6 'Structure model' 1 5 2019-11-06 7 'Structure model' 1 6 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 5 'Structure model' 'Refinement description' 5 6 'Structure model' 'Data collection' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Source and taxonomy' 8 7 'Structure model' 'Data collection' 9 7 'Structure model' 'Database references' 10 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' software 2 6 'Structure model' citation 3 6 'Structure model' citation_author 4 6 'Structure model' pdbx_entity_src_syn 5 7 'Structure model' chem_comp_atom 6 7 'Structure model' chem_comp_bond 7 7 'Structure model' database_2 8 7 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_citation.page_last' 2 6 'Structure model' '_citation.pdbx_database_id_PubMed' 3 6 'Structure model' '_citation.title' 4 6 'Structure model' '_citation_author.name' 5 7 'Structure model' '_database_2.pdbx_DOI' 6 7 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement 3.851 ? 2 X-PLOR phasing . ? 3 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 56 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 56 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 56 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.75 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 5.45 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 37 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 20.34 _pdbx_validate_torsion.psi 52.91 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DG _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 103 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.056 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id "C3'" _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id B _pdbx_validate_chiral.auth_comp_id DC _pdbx_validate_chiral.auth_seq_id 108 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLU N N N N 217 GLU CA C N S 218 GLU C C N N 219 GLU O O N N 220 GLU CB C N N 221 GLU CG C N N 222 GLU CD C N N 223 GLU OE1 O N N 224 GLU OE2 O N N 225 GLU OXT O N N 226 GLU H H N N 227 GLU H2 H N N 228 GLU HA H N N 229 GLU HB2 H N N 230 GLU HB3 H N N 231 GLU HG2 H N N 232 GLU HG3 H N N 233 GLU HE2 H N N 234 GLU HXT H N N 235 GLY N N N N 236 GLY CA C N N 237 GLY C C N N 238 GLY O O N N 239 GLY OXT O N N 240 GLY H H N N 241 GLY H2 H N N 242 GLY HA2 H N N 243 GLY HA3 H N N 244 GLY HXT H N N 245 HOH O O N N 246 HOH H1 H N N 247 HOH H2 H N N 248 ILE N N N N 249 ILE CA C N S 250 ILE C C N N 251 ILE O O N N 252 ILE CB C N S 253 ILE CG1 C N N 254 ILE CG2 C N N 255 ILE CD1 C N N 256 ILE OXT O N N 257 ILE H H N N 258 ILE H2 H N N 259 ILE HA H N N 260 ILE HB H N N 261 ILE HG12 H N N 262 ILE HG13 H N N 263 ILE HG21 H N N 264 ILE HG22 H N N 265 ILE HG23 H N N 266 ILE HD11 H N N 267 ILE HD12 H N N 268 ILE HD13 H N N 269 ILE HXT H N N 270 LEU N N N N 271 LEU CA C N S 272 LEU C C N N 273 LEU O O N N 274 LEU CB C N N 275 LEU CG C N N 276 LEU CD1 C N N 277 LEU CD2 C N N 278 LEU OXT O N N 279 LEU H H N N 280 LEU H2 H N N 281 LEU HA H N N 282 LEU HB2 H N N 283 LEU HB3 H N N 284 LEU HG H N N 285 LEU HD11 H N N 286 LEU HD12 H N N 287 LEU HD13 H N N 288 LEU HD21 H N N 289 LEU HD22 H N N 290 LEU HD23 H N N 291 LEU HXT H N N 292 LYS N N N N 293 LYS CA C N S 294 LYS C C N N 295 LYS O O N N 296 LYS CB C N N 297 LYS CG C N N 298 LYS CD C N N 299 LYS CE C N N 300 LYS NZ N N N 301 LYS OXT O N N 302 LYS H H N N 303 LYS H2 H N N 304 LYS HA H N N 305 LYS HB2 H N N 306 LYS HB3 H N N 307 LYS HG2 H N N 308 LYS HG3 H N N 309 LYS HD2 H N N 310 LYS HD3 H N N 311 LYS HE2 H N N 312 LYS HE3 H N N 313 LYS HZ1 H N N 314 LYS HZ2 H N N 315 LYS HZ3 H N N 316 LYS HXT H N N 317 MET N N N N 318 MET CA C N S 319 MET C C N N 320 MET O O N N 321 MET CB C N N 322 MET CG C N N 323 MET SD S N N 324 MET CE C N N 325 MET OXT O N N 326 MET H H N N 327 MET H2 H N N 328 MET HA H N N 329 MET HB2 H N N 330 MET HB3 H N N 331 MET HG2 H N N 332 MET HG3 H N N 333 MET HE1 H N N 334 MET HE2 H N N 335 MET HE3 H N N 336 MET HXT H N N 337 PHE N N N N 338 PHE CA C N S 339 PHE C C N N 340 PHE O O N N 341 PHE CB C N N 342 PHE CG C Y N 343 PHE CD1 C Y N 344 PHE CD2 C Y N 345 PHE CE1 C Y N 346 PHE CE2 C Y N 347 PHE CZ C Y N 348 PHE OXT O N N 349 PHE H H N N 350 PHE H2 H N N 351 PHE HA H N N 352 PHE HB2 H N N 353 PHE HB3 H N N 354 PHE HD1 H N N 355 PHE HD2 H N N 356 PHE HE1 H N N 357 PHE HE2 H N N 358 PHE HZ H N N 359 PHE HXT H N N 360 PRO N N N N 361 PRO CA C N S 362 PRO C C N N 363 PRO O O N N 364 PRO CB C N N 365 PRO CG C N N 366 PRO CD C N N 367 PRO OXT O N N 368 PRO H H N N 369 PRO HA H N N 370 PRO HB2 H N N 371 PRO HB3 H N N 372 PRO HG2 H N N 373 PRO HG3 H N N 374 PRO HD2 H N N 375 PRO HD3 H N N 376 PRO HXT H N N 377 SER N N N N 378 SER CA C N S 379 SER C C N N 380 SER O O N N 381 SER CB C N N 382 SER OG O N N 383 SER OXT O N N 384 SER H H N N 385 SER H2 H N N 386 SER HA H N N 387 SER HB2 H N N 388 SER HB3 H N N 389 SER HG H N N 390 SER HXT H N N 391 THR N N N N 392 THR CA C N S 393 THR C C N N 394 THR O O N N 395 THR CB C N R 396 THR OG1 O N N 397 THR CG2 C N N 398 THR OXT O N N 399 THR H H N N 400 THR H2 H N N 401 THR HA H N N 402 THR HB H N N 403 THR HG1 H N N 404 THR HG21 H N N 405 THR HG22 H N N 406 THR HG23 H N N 407 THR HXT H N N 408 TRP N N N N 409 TRP CA C N S 410 TRP C C N N 411 TRP O O N N 412 TRP CB C N N 413 TRP CG C Y N 414 TRP CD1 C Y N 415 TRP CD2 C Y N 416 TRP NE1 N Y N 417 TRP CE2 C Y N 418 TRP CE3 C Y N 419 TRP CZ2 C Y N 420 TRP CZ3 C Y N 421 TRP CH2 C Y N 422 TRP OXT O N N 423 TRP H H N N 424 TRP H2 H N N 425 TRP HA H N N 426 TRP HB2 H N N 427 TRP HB3 H N N 428 TRP HD1 H N N 429 TRP HE1 H N N 430 TRP HE3 H N N 431 TRP HZ2 H N N 432 TRP HZ3 H N N 433 TRP HH2 H N N 434 TRP HXT H N N 435 TYR N N N N 436 TYR CA C N S 437 TYR C C N N 438 TYR O O N N 439 TYR CB C N N 440 TYR CG C Y N 441 TYR CD1 C Y N 442 TYR CD2 C Y N 443 TYR CE1 C Y N 444 TYR CE2 C Y N 445 TYR CZ C Y N 446 TYR OH O N N 447 TYR OXT O N N 448 TYR H H N N 449 TYR H2 H N N 450 TYR HA H N N 451 TYR HB2 H N N 452 TYR HB3 H N N 453 TYR HD1 H N N 454 TYR HD2 H N N 455 TYR HE1 H N N 456 TYR HE2 H N N 457 TYR HH H N N 458 TYR HXT H N N 459 VAL N N N N 460 VAL CA C N S 461 VAL C C N N 462 VAL O O N N 463 VAL CB C N N 464 VAL CG1 C N N 465 VAL CG2 C N N 466 VAL OXT O N N 467 VAL H H N N 468 VAL H2 H N N 469 VAL HA H N N 470 VAL HB H N N 471 VAL HG11 H N N 472 VAL HG12 H N N 473 VAL HG13 H N N 474 VAL HG21 H N N 475 VAL HG22 H N N 476 VAL HG23 H N N 477 VAL HXT H N N 478 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLU N CA sing N N 219 GLU N H sing N N 220 GLU N H2 sing N N 221 GLU CA C sing N N 222 GLU CA CB sing N N 223 GLU CA HA sing N N 224 GLU C O doub N N 225 GLU C OXT sing N N 226 GLU CB CG sing N N 227 GLU CB HB2 sing N N 228 GLU CB HB3 sing N N 229 GLU CG CD sing N N 230 GLU CG HG2 sing N N 231 GLU CG HG3 sing N N 232 GLU CD OE1 doub N N 233 GLU CD OE2 sing N N 234 GLU OE2 HE2 sing N N 235 GLU OXT HXT sing N N 236 GLY N CA sing N N 237 GLY N H sing N N 238 GLY N H2 sing N N 239 GLY CA C sing N N 240 GLY CA HA2 sing N N 241 GLY CA HA3 sing N N 242 GLY C O doub N N 243 GLY C OXT sing N N 244 GLY OXT HXT sing N N 245 HOH O H1 sing N N 246 HOH O H2 sing N N 247 ILE N CA sing N N 248 ILE N H sing N N 249 ILE N H2 sing N N 250 ILE CA C sing N N 251 ILE CA CB sing N N 252 ILE CA HA sing N N 253 ILE C O doub N N 254 ILE C OXT sing N N 255 ILE CB CG1 sing N N 256 ILE CB CG2 sing N N 257 ILE CB HB sing N N 258 ILE CG1 CD1 sing N N 259 ILE CG1 HG12 sing N N 260 ILE CG1 HG13 sing N N 261 ILE CG2 HG21 sing N N 262 ILE CG2 HG22 sing N N 263 ILE CG2 HG23 sing N N 264 ILE CD1 HD11 sing N N 265 ILE CD1 HD12 sing N N 266 ILE CD1 HD13 sing N N 267 ILE OXT HXT sing N N 268 LEU N CA sing N N 269 LEU N H sing N N 270 LEU N H2 sing N N 271 LEU CA C sing N N 272 LEU CA CB sing N N 273 LEU CA HA sing N N 274 LEU C O doub N N 275 LEU C OXT sing N N 276 LEU CB CG sing N N 277 LEU CB HB2 sing N N 278 LEU CB HB3 sing N N 279 LEU CG CD1 sing N N 280 LEU CG CD2 sing N N 281 LEU CG HG sing N N 282 LEU CD1 HD11 sing N N 283 LEU CD1 HD12 sing N N 284 LEU CD1 HD13 sing N N 285 LEU CD2 HD21 sing N N 286 LEU CD2 HD22 sing N N 287 LEU CD2 HD23 sing N N 288 LEU OXT HXT sing N N 289 LYS N CA sing N N 290 LYS N H sing N N 291 LYS N H2 sing N N 292 LYS CA C sing N N 293 LYS CA CB sing N N 294 LYS CA HA sing N N 295 LYS C O doub N N 296 LYS C OXT sing N N 297 LYS CB CG sing N N 298 LYS CB HB2 sing N N 299 LYS CB HB3 sing N N 300 LYS CG CD sing N N 301 LYS CG HG2 sing N N 302 LYS CG HG3 sing N N 303 LYS CD CE sing N N 304 LYS CD HD2 sing N N 305 LYS CD HD3 sing N N 306 LYS CE NZ sing N N 307 LYS CE HE2 sing N N 308 LYS CE HE3 sing N N 309 LYS NZ HZ1 sing N N 310 LYS NZ HZ2 sing N N 311 LYS NZ HZ3 sing N N 312 LYS OXT HXT sing N N 313 MET N CA sing N N 314 MET N H sing N N 315 MET N H2 sing N N 316 MET CA C sing N N 317 MET CA CB sing N N 318 MET CA HA sing N N 319 MET C O doub N N 320 MET C OXT sing N N 321 MET CB CG sing N N 322 MET CB HB2 sing N N 323 MET CB HB3 sing N N 324 MET CG SD sing N N 325 MET CG HG2 sing N N 326 MET CG HG3 sing N N 327 MET SD CE sing N N 328 MET CE HE1 sing N N 329 MET CE HE2 sing N N 330 MET CE HE3 sing N N 331 MET OXT HXT sing N N 332 PHE N CA sing N N 333 PHE N H sing N N 334 PHE N H2 sing N N 335 PHE CA C sing N N 336 PHE CA CB sing N N 337 PHE CA HA sing N N 338 PHE C O doub N N 339 PHE C OXT sing N N 340 PHE CB CG sing N N 341 PHE CB HB2 sing N N 342 PHE CB HB3 sing N N 343 PHE CG CD1 doub Y N 344 PHE CG CD2 sing Y N 345 PHE CD1 CE1 sing Y N 346 PHE CD1 HD1 sing N N 347 PHE CD2 CE2 doub Y N 348 PHE CD2 HD2 sing N N 349 PHE CE1 CZ doub Y N 350 PHE CE1 HE1 sing N N 351 PHE CE2 CZ sing Y N 352 PHE CE2 HE2 sing N N 353 PHE CZ HZ sing N N 354 PHE OXT HXT sing N N 355 PRO N CA sing N N 356 PRO N CD sing N N 357 PRO N H sing N N 358 PRO CA C sing N N 359 PRO CA CB sing N N 360 PRO CA HA sing N N 361 PRO C O doub N N 362 PRO C OXT sing N N 363 PRO CB CG sing N N 364 PRO CB HB2 sing N N 365 PRO CB HB3 sing N N 366 PRO CG CD sing N N 367 PRO CG HG2 sing N N 368 PRO CG HG3 sing N N 369 PRO CD HD2 sing N N 370 PRO CD HD3 sing N N 371 PRO OXT HXT sing N N 372 SER N CA sing N N 373 SER N H sing N N 374 SER N H2 sing N N 375 SER CA C sing N N 376 SER CA CB sing N N 377 SER CA HA sing N N 378 SER C O doub N N 379 SER C OXT sing N N 380 SER CB OG sing N N 381 SER CB HB2 sing N N 382 SER CB HB3 sing N N 383 SER OG HG sing N N 384 SER OXT HXT sing N N 385 THR N CA sing N N 386 THR N H sing N N 387 THR N H2 sing N N 388 THR CA C sing N N 389 THR CA CB sing N N 390 THR CA HA sing N N 391 THR C O doub N N 392 THR C OXT sing N N 393 THR CB OG1 sing N N 394 THR CB CG2 sing N N 395 THR CB HB sing N N 396 THR OG1 HG1 sing N N 397 THR CG2 HG21 sing N N 398 THR CG2 HG22 sing N N 399 THR CG2 HG23 sing N N 400 THR OXT HXT sing N N 401 TRP N CA sing N N 402 TRP N H sing N N 403 TRP N H2 sing N N 404 TRP CA C sing N N 405 TRP CA CB sing N N 406 TRP CA HA sing N N 407 TRP C O doub N N 408 TRP C OXT sing N N 409 TRP CB CG sing N N 410 TRP CB HB2 sing N N 411 TRP CB HB3 sing N N 412 TRP CG CD1 doub Y N 413 TRP CG CD2 sing Y N 414 TRP CD1 NE1 sing Y N 415 TRP CD1 HD1 sing N N 416 TRP CD2 CE2 doub Y N 417 TRP CD2 CE3 sing Y N 418 TRP NE1 CE2 sing Y N 419 TRP NE1 HE1 sing N N 420 TRP CE2 CZ2 sing Y N 421 TRP CE3 CZ3 doub Y N 422 TRP CE3 HE3 sing N N 423 TRP CZ2 CH2 doub Y N 424 TRP CZ2 HZ2 sing N N 425 TRP CZ3 CH2 sing Y N 426 TRP CZ3 HZ3 sing N N 427 TRP CH2 HH2 sing N N 428 TRP OXT HXT sing N N 429 TYR N CA sing N N 430 TYR N H sing N N 431 TYR N H2 sing N N 432 TYR CA C sing N N 433 TYR CA CB sing N N 434 TYR CA HA sing N N 435 TYR C O doub N N 436 TYR C OXT sing N N 437 TYR CB CG sing N N 438 TYR CB HB2 sing N N 439 TYR CB HB3 sing N N 440 TYR CG CD1 doub Y N 441 TYR CG CD2 sing Y N 442 TYR CD1 CE1 sing Y N 443 TYR CD1 HD1 sing N N 444 TYR CD2 CE2 doub Y N 445 TYR CD2 HD2 sing N N 446 TYR CE1 CZ doub Y N 447 TYR CE1 HE1 sing N N 448 TYR CE2 CZ sing Y N 449 TYR CE2 HE2 sing N N 450 TYR CZ OH sing N N 451 TYR OH HH sing N N 452 TYR OXT HXT sing N N 453 VAL N CA sing N N 454 VAL N H sing N N 455 VAL N H2 sing N N 456 VAL CA C sing N N 457 VAL CA CB sing N N 458 VAL CA HA sing N N 459 VAL C O doub N N 460 VAL C OXT sing N N 461 VAL CB CG1 sing N N 462 VAL CB CG2 sing N N 463 VAL CB HB sing N N 464 VAL CG1 HG11 sing N N 465 VAL CG1 HG12 sing N N 466 VAL CG1 HG13 sing N N 467 VAL CG2 HG21 sing N N 468 VAL CG2 HG22 sing N N 469 VAL CG2 HG23 sing N N 470 VAL OXT HXT sing N N 471 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1CA6 'b-form double helix' 1CA6 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 8 1_555 -0.287 0.031 -0.076 3.386 1.199 4.123 1 B_DG101:DC116_C B 101 ? C 116 ? 19 1 1 A DT 2 1_555 B DG 7 1_555 2.421 -0.454 -0.224 8.143 1.879 1.835 2 B_DT102:DG115_C B 102 ? C 115 ? 28 ? 1 A DG 3 1_555 B DC 6 1_555 -0.306 -0.131 -0.284 -16.810 -9.805 2.080 3 B_DG103:DC114_C B 103 ? C 114 ? 19 1 1 A DA 4 1_555 B DT 5 1_555 -0.145 -0.199 -0.204 -4.929 -11.248 2.924 4 B_DA104:DT113_C B 104 ? C 113 ? 20 1 1 A DT 5 1_555 B DA 4 1_555 0.158 -0.111 -0.277 3.622 -11.593 -2.200 5 B_DT105:DA112_C B 105 ? C 112 ? 20 1 1 A DC 6 1_555 B DG 3 1_555 0.488 -0.397 -0.212 4.498 -16.441 -1.373 6 B_DC106:DG111_C B 106 ? C 111 ? 19 1 1 A DG 7 1_555 B DT 2 1_555 -2.758 -0.807 0.116 -4.413 -1.932 -3.848 7 B_DG107:DT110_C B 107 ? C 110 ? 28 ? 1 A DC 8 1_555 B DG 1 1_555 0.849 -0.305 -0.043 7.006 2.517 1.567 8 B_DC108:DG109_C B 108 ? C 109 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 8 1_555 A DT 2 1_555 B DG 7 1_555 -0.252 0.119 3.382 2.350 0.161 38.427 0.159 0.684 3.362 0.244 -3.567 38.496 1 BB_DG101DT102:DG115DC116_CC B 101 ? C 116 ? B 102 ? C 115 ? 1 A DT 2 1_555 B DG 7 1_555 A DG 3 1_555 B DC 6 1_555 -0.456 1.334 4.550 3.865 55.992 12.195 -4.276 0.866 2.274 78.545 -5.422 57.329 2 BB_DT102DG103:DC114DG115_CC B 102 ? C 115 ? B 103 ? C 114 ? 1 A DG 3 1_555 B DC 6 1_555 A DA 4 1_555 B DT 5 1_555 0.121 0.842 3.080 -4.158 11.861 23.401 -1.306 -1.364 3.076 26.899 9.429 26.522 3 BB_DG103DA104:DT113DC114_CC B 103 ? C 114 ? B 104 ? C 113 ? 1 A DA 4 1_555 B DT 5 1_555 A DT 5 1_555 B DA 4 1_555 -0.420 -0.476 3.047 1.044 4.149 26.511 -2.007 1.152 2.921 8.973 -2.259 26.848 4 BB_DA104DT105:DA112DT113_CC B 104 ? C 113 ? B 105 ? C 112 ? 1 A DT 5 1_555 B DA 4 1_555 A DC 6 1_555 B DG 3 1_555 -0.157 0.701 3.312 3.521 2.975 38.531 0.685 0.674 3.329 4.489 -5.312 38.795 5 BB_DT105DC106:DG111DA112_CC B 105 ? C 112 ? B 106 ? C 111 ? 1 A DC 6 1_555 B DG 3 1_555 A DG 7 1_555 B DT 2 1_555 1.178 0.416 3.550 0.550 1.227 24.922 0.562 -2.546 3.591 2.840 -1.272 24.958 6 BB_DC106DG107:DT110DG111_CC B 106 ? C 111 ? B 107 ? C 110 ? 1 A DG 7 1_555 B DT 2 1_555 A DC 8 1_555 B DG 1 1_555 0.595 0.172 3.167 1.334 0.999 41.454 0.139 -0.702 3.187 1.411 -1.884 41.486 7 BB_DG107DC108:DG109DT110_CC B 107 ? C 110 ? B 108 ? C 109 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1AZP _pdbx_initial_refinement_model.details 'PDB ENTRY 1AZP' #