HEADER GENE REGULATION 31-MAY-99 1CO1 TITLE FOLD OF THE CBFA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CORE BINDING FACTOR ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RUNT DOMAIN; COMPND 5 SYNONYM: AML1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CBFA RUNT AML-1 RUNT DOMAIN, GENE REGULATION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.J.BERARDI,J.H.BUSHWELLER REVDAT 5 27-DEC-23 1CO1 1 REMARK REVDAT 4 16-FEB-22 1CO1 1 REMARK REVDAT 3 24-FEB-09 1CO1 1 VERSN REVDAT 2 01-APR-03 1CO1 1 JRNL REVDAT 1 07-JUN-00 1CO1 0 JRNL AUTH M.J.BERARDI,C.SUN,M.ZEHR,F.ABILDGAARD,J.PENG,N.A.SPECK, JRNL AUTH 2 J.H.BUSHWELLER JRNL TITL THE IG FOLD OF THE CORE BINDING FACTOR ALPHA RUNT DOMAIN IS JRNL TITL 2 A MEMBER OF A FAMILY OF STRUCTURALLY AND FUNCTIONALLY JRNL TITL 3 RELATED IG-FOLD DNA-BINDING DOMAINS. JRNL REF STRUCTURE FOLD.DES. V. 7 1247 1999 JRNL REFN ISSN 0969-2126 JRNL PMID 10545320 JRNL DOI 10.1016/S0969-2126(00)80058-1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OPAL 2.6 REMARK 3 AUTHORS : K. WURTRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CO1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-99. REMARK 100 THE DEPOSITION ID IS D_1000001133. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 109 O ALA A 120 1.55 REMARK 500 O ASP A 70 HH TYR A 73 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 1 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 ARG A 99 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 1 ARG A 134 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 2 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 2 ARG A 78 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 2 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 ARG A 124 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 ARG A 134 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 3 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 3 ARG A 78 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 3 ARG A 99 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 3 ARG A 102 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 3 ARG A 134 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 4 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 4 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 5 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 5 ARG A 78 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 5 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 5 ARG A 95 CD - NE - CZ ANGL. DEV. = 10.4 DEGREES REMARK 500 5 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 5 ARG A 95 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 6 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 6 VAL A 65 CA - CB - CG2 ANGL. DEV. = 10.4 DEGREES REMARK 500 6 ARG A 78 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 6 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 6 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 6 ARG A 124 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 6 ARG A 134 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 7 ARG A 24 NH1 - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 7 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 7 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 7 ARG A 78 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 7 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 7 ARG A 102 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 7 ARG A 124 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 7 ARG A 134 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 8 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 8 ARG A 78 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 8 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 9 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 9 ARG A 78 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 9 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 9 ARG A 95 NH1 - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 9 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 9 TYR A 122 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 10 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 55 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 23 72.94 -69.01 REMARK 500 1 THR A 25 -120.77 -101.94 REMARK 500 1 HIS A 38 37.77 -64.20 REMARK 500 1 CYS A 41 71.76 49.13 REMARK 500 1 LYS A 43 171.78 62.75 REMARK 500 1 ALA A 48 173.50 54.55 REMARK 500 1 THR A 61 -177.68 152.28 REMARK 500 1 ASN A 69 40.50 -156.78 REMARK 500 1 ASP A 70 -26.60 62.85 REMARK 500 1 ASN A 72 -45.20 -173.86 REMARK 500 1 TYR A 73 23.72 43.57 REMARK 500 1 ALA A 75 -75.24 64.06 REMARK 500 1 GLU A 76 99.17 33.81 REMARK 500 1 LYS A 85 -73.13 -126.53 REMARK 500 1 ASN A 86 33.50 -72.93 REMARK 500 1 ARG A 99 42.41 -73.11 REMARK 500 1 SER A 100 157.21 73.04 REMARK 500 1 ARG A 124 125.49 96.78 REMARK 500 1 ILE A 126 122.89 38.53 REMARK 500 1 ASP A 131 -70.50 -101.37 REMARK 500 1 ARG A 134 145.26 -174.94 REMARK 500 2 VAL A 23 73.53 -64.89 REMARK 500 2 THR A 25 -105.33 -133.06 REMARK 500 2 HIS A 38 47.69 -67.51 REMARK 500 2 CYS A 41 95.84 62.80 REMARK 500 2 LYS A 43 177.33 74.14 REMARK 500 2 LEU A 45 87.16 51.22 REMARK 500 2 PRO A 46 61.62 -66.90 REMARK 500 2 ASN A 69 -61.90 -121.74 REMARK 500 2 GLU A 71 -26.94 64.82 REMARK 500 2 ASN A 72 49.33 -102.35 REMARK 500 2 SER A 74 72.75 14.92 REMARK 500 2 ASN A 79 -9.03 79.71 REMARK 500 2 ALA A 80 20.82 -68.91 REMARK 500 2 LYS A 85 -72.05 -96.00 REMARK 500 2 PHE A 91 -139.69 51.33 REMARK 500 2 LEU A 94 118.56 -160.88 REMARK 500 2 SER A 100 -177.45 58.71 REMARK 500 2 HIS A 123 62.73 -57.96 REMARK 500 2 ALA A 125 -103.89 -164.83 REMARK 500 2 ILE A 126 -158.85 43.15 REMARK 500 3 VAL A 23 71.50 -69.77 REMARK 500 3 ARG A 24 172.11 -53.97 REMARK 500 3 THR A 25 -135.10 -108.28 REMARK 500 3 PRO A 36 48.06 -66.30 REMARK 500 3 THR A 37 16.71 -65.02 REMARK 500 3 HIS A 38 69.45 -55.21 REMARK 500 3 CYS A 41 84.21 59.04 REMARK 500 3 LYS A 43 160.29 71.77 REMARK 500 3 ALA A 48 175.72 66.09 REMARK 500 REMARK 500 THIS ENTRY HAS 266 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 ARG A 24 0.09 SIDE CHAIN REMARK 500 2 TYR A 73 0.08 SIDE CHAIN REMARK 500 8 TYR A 122 0.07 SIDE CHAIN REMARK 500 9 ARG A 78 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1CO1 A 21 135 UNP Q01196 RUNX1_HUMAN 61 175 SEQRES 1 A 115 GLU LEU VAL ARG THR ASP SER PRO ASN PHE LEU CYS SER SEQRES 2 A 115 VAL LEU PRO THR HIS TRP ARG CYS ASN LYS THR LEU PRO SEQRES 3 A 115 ILE ALA PHE LYS VAL VAL ALA LEU GLY ASP VAL PRO ASP SEQRES 4 A 115 GLY THR LEU VAL THR VAL MET ALA GLY ASN ASP GLU ASN SEQRES 5 A 115 TYR SER ALA GLU LEU ARG ASN ALA THR ALA ALA MET LYS SEQRES 6 A 115 ASN GLN VAL ALA ARG PHE ASN ASP LEU ARG PHE VAL GLY SEQRES 7 A 115 ARG SER GLY ARG GLY LYS SER PHE THR LEU THR ILE THR SEQRES 8 A 115 VAL PHE THR ASN PRO PRO GLN VAL ALA THR TYR HIS ARG SEQRES 9 A 115 ALA ILE LYS ILE THR VAL ASP GLY PRO ARG GLU SHEET 1 A 3 PHE A 30 SER A 33 0 SHEET 2 A 3 PHE A 49 ALA A 53 -1 N VAL A 52 O LEU A 31 SHEET 3 A 3 VAL A 88 PHE A 91 -1 N PHE A 91 O PHE A 49 SHEET 1 B 4 THR A 81 MET A 84 0 SHEET 2 B 4 THR A 61 GLY A 68 -1 N VAL A 63 O ALA A 82 SHEET 3 B 4 SER A 105 THR A 111 -1 N THR A 111 O LEU A 62 SHEET 4 B 4 VAL A 119 THR A 121 -1 N ALA A 120 O ILE A 110 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1