data_1CW9 # _entry.id 1CW9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1CW9 pdb_00001cw9 10.2210/pdb1cw9/pdb NDB BD0021 ? ? RCSB RCSB009586 ? ? WWPDB D_1000009586 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-10-14 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-02-01 5 'Structure model' 1 4 2017-10-04 6 'Structure model' 1 5 2024-02-07 7 'Structure model' 1 6 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Structure summary' 4 5 'Structure model' 'Refinement description' 5 6 'Structure model' 'Data collection' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Derived calculations' 8 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' software 2 6 'Structure model' chem_comp_atom 3 6 'Structure model' chem_comp_bond 4 6 'Structure model' database_2 5 6 'Structure model' pdbx_struct_conn_angle 6 6 'Structure model' struct_conn 7 6 'Structure model' struct_site 8 7 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_software.classification' 2 5 'Structure model' '_software.name' 3 6 'Structure model' '_database_2.pdbx_DOI' 4 6 'Structure model' '_database_2.pdbx_database_accession' 5 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 6 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 10 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 11 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 12 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 13 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 17 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 18 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 19 6 'Structure model' '_pdbx_struct_conn_angle.value' 20 6 'Structure model' '_struct_conn.conn_type_id' 21 6 'Structure model' '_struct_conn.id' 22 6 'Structure model' '_struct_conn.pdbx_dist_value' 23 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 24 6 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 25 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 26 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 27 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 28 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 29 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 30 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 31 6 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 32 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 36 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 37 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 38 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1CW9 _pdbx_database_status.recvd_initial_deposition_date 1999-08-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'van Aalten, D.M.F.' 1 'Erlanson, D.A.' 2 'Verdine, G.L.' 3 'Joshua-Tor, L.' 4 # _citation.id primary _citation.title 'A structural snapshot of base-pair opening in DNA.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 96 _citation.page_first 11809 _citation.page_last 11814 _citation.year 1999 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10518532 _citation.pdbx_database_id_DOI 10.1073/pnas.96.21.11809 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'van Aalten, D.M.' 1 ? primary 'Erlanson, D.A.' 2 ? primary 'Verdine, G.L.' 3 ? primary 'Joshua-Tor, L.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*AP*GP*(G47)P*CP*CP*TP*GP*G)-3'" 3106.110 4 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 water nat water 18.015 271 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DA)(DG)(G47)(DC)(DC)(DT)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCAGGCCTGG _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DA n 1 4 DG n 1 5 G47 n 1 6 DC n 1 7 DC n 1 8 DT n 1 9 DG n 1 10 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'CROSSLINKED DNA WAS SYNTHESIZED BY THE CONVERTIBLE NUCLEOSIDE APPROACH' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G47 'DNA linking' n "N2-ETHANETHIOL-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" ? 'C12 H18 N5 O7 P S' 407.339 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 G47 5 5 5 G47 +G A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n B 1 1 DC 1 1 1 DC C B . n B 1 2 DC 2 2 2 DC C B . n B 1 3 DA 3 3 3 DA A B . n B 1 4 DG 4 4 4 DG G B . n B 1 5 G47 5 5 5 G47 +G B . n B 1 6 DC 6 6 6 DC C B . n B 1 7 DC 7 7 7 DC C B . n B 1 8 DT 8 8 8 DT T B . n B 1 9 DG 9 9 9 DG G B . n B 1 10 DG 10 10 10 DG G B . n C 1 1 DC 1 1 1 DC C C . n C 1 2 DC 2 2 2 DC C C . n C 1 3 DA 3 3 3 DA A C . n C 1 4 DG 4 4 4 DG G C . n C 1 5 G47 5 5 5 G47 +G C . n C 1 6 DC 6 6 6 DC C C . n C 1 7 DC 7 7 7 DC C C . n C 1 8 DT 8 8 8 DT T C . n C 1 9 DG 9 9 9 DG G C . n C 1 10 DG 10 10 10 DG G C . n D 1 1 DC 1 1 1 DC C D . n D 1 2 DC 2 2 2 DC C D . n D 1 3 DA 3 3 3 DA A D . n D 1 4 DG 4 4 4 DG G D . n D 1 5 G47 5 5 5 G47 +G D . n D 1 6 DC 6 6 6 DC C D . n D 1 7 DC 7 7 7 DC C D . n D 1 8 DT 8 8 8 DT T D . n D 1 9 DG 9 9 9 DG G D . n D 1 10 DG 10 10 10 DG G D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CA 1 11 1 CA CA A . F 3 HOH 1 12 2 HOH HOH A . F 3 HOH 2 13 303 HOH HOH A . F 3 HOH 3 14 305 HOH HOH A . F 3 HOH 4 15 308 HOH HOH A . F 3 HOH 5 16 313 HOH HOH A . F 3 HOH 6 17 318 HOH HOH A . F 3 HOH 7 18 324 HOH HOH A . F 3 HOH 8 19 327 HOH HOH A . F 3 HOH 9 20 329 HOH HOH A . F 3 HOH 10 21 334 HOH HOH A . F 3 HOH 11 22 336 HOH HOH A . F 3 HOH 12 23 339 HOH HOH A . F 3 HOH 13 24 342 HOH HOH A . F 3 HOH 14 25 346 HOH HOH A . F 3 HOH 15 26 349 HOH HOH A . F 3 HOH 16 27 351 HOH HOH A . F 3 HOH 17 28 352 HOH HOH A . F 3 HOH 18 29 354 HOH HOH A . F 3 HOH 19 30 355 HOH HOH A . F 3 HOH 20 31 357 HOH HOH A . F 3 HOH 21 32 358 HOH HOH A . F 3 HOH 22 33 381 HOH HOH A . F 3 HOH 23 34 384 HOH HOH A . F 3 HOH 24 35 385 HOH HOH A . F 3 HOH 25 36 389 HOH HOH A . F 3 HOH 26 37 410 HOH HOH A . F 3 HOH 27 38 418 HOH HOH A . F 3 HOH 28 39 420 HOH HOH A . F 3 HOH 29 40 422 HOH HOH A . F 3 HOH 30 41 426 HOH HOH A . F 3 HOH 31 42 427 HOH HOH A . F 3 HOH 32 43 431 HOH HOH A . F 3 HOH 33 44 433 HOH HOH A . F 3 HOH 34 45 438 HOH HOH A . F 3 HOH 35 46 439 HOH HOH A . F 3 HOH 36 47 457 HOH HOH A . F 3 HOH 37 48 461 HOH HOH A . F 3 HOH 38 49 463 HOH HOH A . F 3 HOH 39 50 464 HOH HOH A . F 3 HOH 40 51 465 HOH HOH A . F 3 HOH 41 52 468 HOH HOH A . F 3 HOH 42 53 470 HOH HOH A . F 3 HOH 43 54 476 HOH HOH A . F 3 HOH 44 55 481 HOH HOH A . F 3 HOH 45 56 496 HOH HOH A . F 3 HOH 46 57 502 HOH HOH A . F 3 HOH 47 58 514 HOH HOH A . F 3 HOH 48 59 516 HOH HOH A . F 3 HOH 49 60 519 HOH HOH A . F 3 HOH 50 61 528 HOH HOH A . F 3 HOH 51 62 543 HOH HOH A . F 3 HOH 52 63 544 HOH HOH A . F 3 HOH 53 64 548 HOH HOH A . F 3 HOH 54 65 552 HOH HOH A . F 3 HOH 55 66 556 HOH HOH A . F 3 HOH 56 67 567 HOH HOH A . F 3 HOH 57 68 574 HOH HOH A . F 3 HOH 58 69 581 HOH HOH A . F 3 HOH 59 70 583 HOH HOH A . F 3 HOH 60 71 584 HOH HOH A . F 3 HOH 61 72 590 HOH HOH A . F 3 HOH 62 73 595 HOH HOH A . F 3 HOH 63 74 600 HOH HOH A . F 3 HOH 64 75 606 HOH HOH A . F 3 HOH 65 76 608 HOH HOH A . F 3 HOH 66 77 615 HOH HOH A . F 3 HOH 67 78 617 HOH HOH A . F 3 HOH 68 79 621 HOH HOH A . F 3 HOH 69 80 623 HOH HOH A . F 3 HOH 70 81 639 HOH HOH A . F 3 HOH 71 82 641 HOH HOH A . F 3 HOH 72 83 644 HOH HOH A . F 3 HOH 73 84 654 HOH HOH A . F 3 HOH 74 85 659 HOH HOH A . F 3 HOH 75 86 660 HOH HOH A . F 3 HOH 76 87 690 HOH HOH A . F 3 HOH 77 88 696 HOH HOH A . G 3 HOH 1 304 304 HOH HOH B . G 3 HOH 2 306 306 HOH HOH B . G 3 HOH 3 316 316 HOH HOH B . G 3 HOH 4 326 326 HOH HOH B . G 3 HOH 5 328 328 HOH HOH B . G 3 HOH 6 331 331 HOH HOH B . G 3 HOH 7 333 333 HOH HOH B . G 3 HOH 8 338 338 HOH HOH B . G 3 HOH 9 345 345 HOH HOH B . G 3 HOH 10 347 347 HOH HOH B . G 3 HOH 11 348 348 HOH HOH B . G 3 HOH 12 353 353 HOH HOH B . G 3 HOH 13 356 356 HOH HOH B . G 3 HOH 14 359 359 HOH HOH B . G 3 HOH 15 363 363 HOH HOH B . G 3 HOH 16 366 366 HOH HOH B . G 3 HOH 17 367 367 HOH HOH B . G 3 HOH 18 369 369 HOH HOH B . G 3 HOH 19 380 380 HOH HOH B . G 3 HOH 20 382 382 HOH HOH B . G 3 HOH 21 386 386 HOH HOH B . G 3 HOH 22 392 392 HOH HOH B . G 3 HOH 23 393 393 HOH HOH B . G 3 HOH 24 395 395 HOH HOH B . G 3 HOH 25 397 397 HOH HOH B . G 3 HOH 26 419 419 HOH HOH B . G 3 HOH 27 421 421 HOH HOH B . G 3 HOH 28 424 424 HOH HOH B . G 3 HOH 29 428 428 HOH HOH B . G 3 HOH 30 434 434 HOH HOH B . G 3 HOH 31 449 449 HOH HOH B . G 3 HOH 32 450 450 HOH HOH B . G 3 HOH 33 452 452 HOH HOH B . G 3 HOH 34 458 458 HOH HOH B . G 3 HOH 35 467 467 HOH HOH B . G 3 HOH 36 474 474 HOH HOH B . G 3 HOH 37 475 475 HOH HOH B . G 3 HOH 38 492 492 HOH HOH B . G 3 HOH 39 493 493 HOH HOH B . G 3 HOH 40 501 501 HOH HOH B . G 3 HOH 41 507 507 HOH HOH B . G 3 HOH 42 509 509 HOH HOH B . G 3 HOH 43 510 510 HOH HOH B . G 3 HOH 44 513 513 HOH HOH B . G 3 HOH 45 523 523 HOH HOH B . G 3 HOH 46 530 530 HOH HOH B . G 3 HOH 47 533 533 HOH HOH B . G 3 HOH 48 537 537 HOH HOH B . G 3 HOH 49 541 541 HOH HOH B . G 3 HOH 50 545 545 HOH HOH B . G 3 HOH 51 572 572 HOH HOH B . G 3 HOH 52 573 573 HOH HOH B . G 3 HOH 53 587 587 HOH HOH B . G 3 HOH 54 588 588 HOH HOH B . G 3 HOH 55 593 593 HOH HOH B . G 3 HOH 56 596 596 HOH HOH B . G 3 HOH 57 599 599 HOH HOH B . G 3 HOH 58 603 603 HOH HOH B . G 3 HOH 59 609 609 HOH HOH B . G 3 HOH 60 631 631 HOH HOH B . G 3 HOH 61 636 636 HOH HOH B . G 3 HOH 62 637 637 HOH HOH B . G 3 HOH 63 638 638 HOH HOH B . G 3 HOH 64 649 649 HOH HOH B . G 3 HOH 65 651 651 HOH HOH B . G 3 HOH 66 669 669 HOH HOH B . G 3 HOH 67 698 698 HOH HOH B . G 3 HOH 68 706 706 HOH HOH B . H 3 HOH 1 11 4 HOH HOH C . H 3 HOH 2 12 302 HOH HOH C . H 3 HOH 3 13 309 HOH HOH C . H 3 HOH 4 14 310 HOH HOH C . H 3 HOH 5 15 311 HOH HOH C . H 3 HOH 6 16 312 HOH HOH C . H 3 HOH 7 17 315 HOH HOH C . H 3 HOH 8 18 319 HOH HOH C . H 3 HOH 9 19 320 HOH HOH C . H 3 HOH 10 20 322 HOH HOH C . H 3 HOH 11 21 323 HOH HOH C . H 3 HOH 12 22 325 HOH HOH C . H 3 HOH 13 23 330 HOH HOH C . H 3 HOH 14 24 332 HOH HOH C . H 3 HOH 15 25 350 HOH HOH C . H 3 HOH 16 26 360 HOH HOH C . H 3 HOH 17 27 362 HOH HOH C . H 3 HOH 18 28 364 HOH HOH C . H 3 HOH 19 29 368 HOH HOH C . H 3 HOH 20 30 378 HOH HOH C . H 3 HOH 21 31 390 HOH HOH C . H 3 HOH 22 32 411 HOH HOH C . H 3 HOH 23 33 412 HOH HOH C . H 3 HOH 24 34 413 HOH HOH C . H 3 HOH 25 35 425 HOH HOH C . H 3 HOH 26 36 429 HOH HOH C . H 3 HOH 27 37 430 HOH HOH C . H 3 HOH 28 38 432 HOH HOH C . H 3 HOH 29 39 436 HOH HOH C . H 3 HOH 30 40 440 HOH HOH C . H 3 HOH 31 41 447 HOH HOH C . H 3 HOH 32 42 453 HOH HOH C . H 3 HOH 33 43 456 HOH HOH C . H 3 HOH 34 44 460 HOH HOH C . H 3 HOH 35 45 466 HOH HOH C . H 3 HOH 36 46 480 HOH HOH C . H 3 HOH 37 47 485 HOH HOH C . H 3 HOH 38 48 497 HOH HOH C . H 3 HOH 39 49 518 HOH HOH C . H 3 HOH 40 50 521 HOH HOH C . H 3 HOH 41 51 522 HOH HOH C . H 3 HOH 42 52 538 HOH HOH C . H 3 HOH 43 53 542 HOH HOH C . H 3 HOH 44 54 546 HOH HOH C . H 3 HOH 45 55 549 HOH HOH C . H 3 HOH 46 56 557 HOH HOH C . H 3 HOH 47 57 558 HOH HOH C . H 3 HOH 48 58 563 HOH HOH C . H 3 HOH 49 59 569 HOH HOH C . H 3 HOH 50 60 580 HOH HOH C . H 3 HOH 51 61 586 HOH HOH C . H 3 HOH 52 62 591 HOH HOH C . H 3 HOH 53 63 592 HOH HOH C . H 3 HOH 54 64 594 HOH HOH C . H 3 HOH 55 65 601 HOH HOH C . H 3 HOH 56 66 612 HOH HOH C . H 3 HOH 57 67 624 HOH HOH C . H 3 HOH 58 68 625 HOH HOH C . H 3 HOH 59 69 640 HOH HOH C . H 3 HOH 60 70 653 HOH HOH C . H 3 HOH 61 71 656 HOH HOH C . I 3 HOH 1 11 3 HOH HOH D . I 3 HOH 2 12 314 HOH HOH D . I 3 HOH 3 13 321 HOH HOH D . I 3 HOH 4 14 335 HOH HOH D . I 3 HOH 5 15 337 HOH HOH D . I 3 HOH 6 16 361 HOH HOH D . I 3 HOH 7 17 371 HOH HOH D . I 3 HOH 8 18 372 HOH HOH D . I 3 HOH 9 19 373 HOH HOH D . I 3 HOH 10 20 374 HOH HOH D . I 3 HOH 11 21 375 HOH HOH D . I 3 HOH 12 22 376 HOH HOH D . I 3 HOH 13 23 377 HOH HOH D . I 3 HOH 14 24 383 HOH HOH D . I 3 HOH 15 25 391 HOH HOH D . I 3 HOH 16 26 394 HOH HOH D . I 3 HOH 17 27 398 HOH HOH D . I 3 HOH 18 28 401 HOH HOH D . I 3 HOH 19 29 402 HOH HOH D . I 3 HOH 20 30 403 HOH HOH D . I 3 HOH 21 31 406 HOH HOH D . I 3 HOH 22 32 407 HOH HOH D . I 3 HOH 23 33 408 HOH HOH D . I 3 HOH 24 34 414 HOH HOH D . I 3 HOH 25 35 415 HOH HOH D . I 3 HOH 26 36 416 HOH HOH D . I 3 HOH 27 37 423 HOH HOH D . I 3 HOH 28 38 435 HOH HOH D . I 3 HOH 29 39 437 HOH HOH D . I 3 HOH 30 40 441 HOH HOH D . I 3 HOH 31 41 443 HOH HOH D . I 3 HOH 32 42 444 HOH HOH D . I 3 HOH 33 43 448 HOH HOH D . I 3 HOH 34 44 451 HOH HOH D . I 3 HOH 35 45 462 HOH HOH D . I 3 HOH 36 46 469 HOH HOH D . I 3 HOH 37 47 477 HOH HOH D . I 3 HOH 38 48 478 HOH HOH D . I 3 HOH 39 49 479 HOH HOH D . I 3 HOH 40 50 487 HOH HOH D . I 3 HOH 41 51 504 HOH HOH D . I 3 HOH 42 52 508 HOH HOH D . I 3 HOH 43 53 520 HOH HOH D . I 3 HOH 44 54 525 HOH HOH D . I 3 HOH 45 55 531 HOH HOH D . I 3 HOH 46 56 535 HOH HOH D . I 3 HOH 47 57 547 HOH HOH D . I 3 HOH 48 58 553 HOH HOH D . I 3 HOH 49 59 555 HOH HOH D . I 3 HOH 50 60 565 HOH HOH D . I 3 HOH 51 61 571 HOH HOH D . I 3 HOH 52 62 576 HOH HOH D . I 3 HOH 53 63 585 HOH HOH D . I 3 HOH 54 64 597 HOH HOH D . I 3 HOH 55 65 602 HOH HOH D . I 3 HOH 56 66 604 HOH HOH D . I 3 HOH 57 67 619 HOH HOH D . I 3 HOH 58 68 630 HOH HOH D . I 3 HOH 59 69 643 HOH HOH D . I 3 HOH 60 70 652 HOH HOH D . I 3 HOH 61 71 661 HOH HOH D . I 3 HOH 62 72 667 HOH HOH D . I 3 HOH 63 73 668 HOH HOH D . I 3 HOH 64 74 678 HOH HOH D . I 3 HOH 65 75 685 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 CNS refinement . ? 2 MAR345 'data collection' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 1CW9 _cell.length_a 34.435 _cell.length_b 43.180 _cell.length_c 72.412 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1CW9 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1CW9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_percent_sol 45. _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;MPD, CALCIUM CHLORIDE, SODIUM CHLORIDE, SPERMINE TETRACHLORIDE, SODIUM CACODYLATE, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 CACL2 ? ? ? 1 2 1 NACL ? ? ? 1 3 1 SPERMINE ? ? ? 1 4 1 'SODIUM CACODYLATE' ? ? ? 1 5 1 MPD ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-03-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0800 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X26C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X26C _diffrn_source.pdbx_wavelength 1.0800 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1CW9 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 13.0 _reflns.d_resolution_high 1.55 _reflns.number_obs 62990 _reflns.number_all 62990 _reflns.percent_possible_obs 95.5 _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.0 _reflns.B_iso_Wilson_estimate 14.7 _reflns.pdbx_redundancy 4.0 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.55 _reflns_shell.d_res_low 1.61 _reflns_shell.percent_possible_all 98.0 _reflns_shell.Rmerge_I_obs 0.32 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.0 _reflns_shell.pdbx_redundancy 4.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1CW9 _refine.ls_number_reflns_obs 15525 _refine.ls_number_reflns_all 15525 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 13.0 _refine.ls_d_res_high 1.55 _refine.ls_percent_reflns_obs 95.7 _refine.ls_R_factor_obs 0.2031 _refine.ls_R_factor_all 0.2031 _refine.ls_R_factor_R_work 0.203 _refine.ls_R_factor_R_free 0.232 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5 _refine.ls_number_reflns_R_free 782 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 18.3 _refine.aniso_B[1][1] 3.895 _refine.aniso_B[2][2] -2.358 _refine.aniso_B[3][3] -1.537 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'FLAT - CNS CALCULATED MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'MAXIMUM LIKELIHOOD.' _refine.pdbx_starting_model BDJ017 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model 'RESTRAINED CNS' _refine.pdbx_stereochemistry_target_values 'CNS NUCLEIC ACID PARAMETERS USING SOFT VAN DER WAALS PARAMETERS (PARKINSON ET AL., ACTA D, 52, 57-64 (1996)).' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 820 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 271 _refine_hist.number_atoms_total 1092 _refine_hist.d_res_high 1.55 _refine_hist.d_res_low 13.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.53 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 3.938 ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 4.824 ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.875 ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.828 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.55 _refine_ls_shell.d_res_low 1.61 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work ? _refine_ls_shell.percent_reflns_obs 98.0 _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 5 _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? # _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file DNA-RNA_REP.PARAM _pdbx_xplor_file.topol_file DNA-RNA.TOP _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1CW9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1CW9 _struct.title 'DNA DECAMER WITH AN ENGINEERED CROSSLINK IN THE MINOR GROOVE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1CW9 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'CROSSLINKED DOUBLE-HELICAL DNA, BASE-PAIR OPENING, PARTIAL BASE FLIPPING., DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1CW9 _struct_ref.pdbx_db_accession 1CW9 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1CW9 A 1 ? 10 ? 1CW9 1 ? 10 ? 1 10 2 1 1CW9 B 1 ? 10 ? 1CW9 1 ? 10 ? 1 10 3 1 1CW9 C 1 ? 10 ? 1CW9 1 ? 10 ? 1 10 4 1 1CW9 D 1 ? 10 ? 1CW9 1 ? 10 ? 1 10 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G 2 1 C,D,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 4 "O3'" ? ? ? 1_555 A G47 5 P ? ? A DG 4 A G47 5 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale2 covale one ? A G47 5 "O3'" ? ? ? 1_555 A DC 6 P ? ? A G47 5 A DC 6 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale3 covale none ? A G47 5 SG ? ? ? 1_555 B G47 5 SG ? ? A G47 5 B G47 5 1_555 ? ? ? ? ? ? ? 2.091 ? ? covale4 covale both ? B DG 4 "O3'" ? ? ? 1_555 B G47 5 P ? ? B DG 4 B G47 5 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale5 covale one ? B G47 5 "O3'" ? ? ? 1_555 B DC 6 P ? ? B G47 5 B DC 6 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale6 covale both ? C DG 4 "O3'" ? ? ? 1_555 C G47 5 P ? ? C DG 4 C G47 5 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale7 covale one ? C G47 5 "O3'" ? ? ? 1_555 C DC 6 P ? ? C G47 5 C DC 6 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale8 covale none ? C G47 5 SG ? ? ? 1_555 D G47 5 SG ? ? C G47 5 D G47 5 1_555 ? ? ? ? ? ? ? 2.145 ? ? covale9 covale both ? D DG 4 "O3'" ? ? ? 1_555 D G47 5 P ? ? D DG 4 D G47 5 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale10 covale one ? D G47 5 "O3'" ? ? ? 1_555 D DC 6 P ? ? D G47 5 D DC 6 1_555 ? ? ? ? ? ? ? 1.592 ? ? metalc1 metalc ? ? A G47 5 O6 ? ? ? 1_555 E CA . CA ? ? A G47 5 A CA 11 1_555 ? ? ? ? ? ? ? 2.513 ? ? metalc2 metalc ? ? E CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 11 A HOH 16 1_555 ? ? ? ? ? ? ? 2.442 ? ? metalc3 metalc ? ? E CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 11 A HOH 21 1_555 ? ? ? ? ? ? ? 2.319 ? ? metalc4 metalc ? ? E CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 11 A HOH 26 1_555 ? ? ? ? ? ? ? 2.365 ? ? metalc5 metalc ? ? E CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 11 A HOH 30 1_555 ? ? ? ? ? ? ? 2.492 ? ? metalc6 metalc ? ? E CA . CA ? ? ? 1_555 B G47 5 O6 ? ? A CA 11 B G47 5 1_555 ? ? ? ? ? ? ? 2.542 ? ? metalc7 metalc ? ? E CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 11 B HOH 359 1_555 ? ? ? ? ? ? ? 2.413 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 3 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G47 5 N1 ? ? ? 1_555 B DC 6 N3 ? ? A G47 5 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G47 5 N2 ? ? ? 1_555 B DC 6 O2 ? ? A G47 5 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G47 5 O6 ? ? ? 1_555 B DC 6 N4 ? ? A G47 5 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B G47 5 N1 ? ? A DC 6 B G47 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B G47 5 O6 ? ? A DC 6 B G47 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B G47 5 N2 ? ? A DC 6 B G47 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 8 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 8 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DC 1 N3 ? ? ? 1_555 D DG 10 N1 ? ? C DC 1 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DC 1 N4 ? ? ? 1_555 D DG 10 O6 ? ? C DC 1 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DC 1 O2 ? ? ? 1_555 D DG 10 N2 ? ? C DC 1 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 9 N1 ? ? C DC 2 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 9 O6 ? ? C DC 2 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 9 N2 ? ? C DC 2 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DA 3 N1 ? ? ? 1_555 D DT 8 N3 ? ? C DA 3 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DA 3 N6 ? ? ? 1_555 D DT 8 O4 ? ? C DA 3 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DC 7 N3 ? ? C DG 4 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DC 7 O2 ? ? C DG 4 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DC 7 N4 ? ? C DG 4 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C G47 5 N1 ? ? ? 1_555 D DC 6 N3 ? ? C G47 5 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C G47 5 N2 ? ? ? 1_555 D DC 6 O2 ? ? C G47 5 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C G47 5 O6 ? ? ? 1_555 D DC 6 N4 ? ? C G47 5 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D G47 5 N2 ? ? C DC 6 D G47 5 1_555 ? ? ? ? ? ? 'DC-G47 PAIR' ? ? ? hydrog44 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 7 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 7 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DC 7 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 7 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DT 8 N3 ? ? ? 1_555 D DA 3 N1 ? ? C DT 8 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DT 8 O4 ? ? ? 1_555 D DA 3 N6 ? ? C DT 8 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DG 9 N1 ? ? ? 1_555 D DC 2 N3 ? ? C DG 9 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DG 9 N2 ? ? ? 1_555 D DC 2 O2 ? ? C DG 9 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C DG 9 O6 ? ? ? 1_555 D DC 2 N4 ? ? C DG 9 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C DG 10 N1 ? ? ? 1_555 D DC 1 N3 ? ? C DG 10 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C DG 10 N2 ? ? ? 1_555 D DC 1 O2 ? ? C DG 10 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C DG 10 O6 ? ? ? 1_555 D DC 1 N4 ? ? C DG 10 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G47 5 ? A G47 5 ? 1_555 CA ? E CA . ? A CA 11 ? 1_555 O ? F HOH . ? A HOH 16 ? 1_555 78.1 ? 2 O6 ? A G47 5 ? A G47 5 ? 1_555 CA ? E CA . ? A CA 11 ? 1_555 O ? F HOH . ? A HOH 21 ? 1_555 122.2 ? 3 O ? F HOH . ? A HOH 16 ? 1_555 CA ? E CA . ? A CA 11 ? 1_555 O ? F HOH . ? A HOH 21 ? 1_555 80.8 ? 4 O6 ? A G47 5 ? A G47 5 ? 1_555 CA ? E CA . ? A CA 11 ? 1_555 O ? F HOH . ? A HOH 26 ? 1_555 73.4 ? 5 O ? F HOH . ? A HOH 16 ? 1_555 CA ? E CA . ? A CA 11 ? 1_555 O ? F HOH . ? A HOH 26 ? 1_555 95.0 ? 6 O ? F HOH . ? A HOH 21 ? 1_555 CA ? E CA . ? A CA 11 ? 1_555 O ? F HOH . ? A HOH 26 ? 1_555 161.9 ? 7 O6 ? A G47 5 ? A G47 5 ? 1_555 CA ? E CA . ? A CA 11 ? 1_555 O ? F HOH . ? A HOH 30 ? 1_555 142.8 ? 8 O ? F HOH . ? A HOH 16 ? 1_555 CA ? E CA . ? A CA 11 ? 1_555 O ? F HOH . ? A HOH 30 ? 1_555 78.3 ? 9 O ? F HOH . ? A HOH 21 ? 1_555 CA ? E CA . ? A CA 11 ? 1_555 O ? F HOH . ? A HOH 30 ? 1_555 81.3 ? 10 O ? F HOH . ? A HOH 26 ? 1_555 CA ? E CA . ? A CA 11 ? 1_555 O ? F HOH . ? A HOH 30 ? 1_555 80.6 ? 11 O6 ? A G47 5 ? A G47 5 ? 1_555 CA ? E CA . ? A CA 11 ? 1_555 O6 ? B G47 5 ? B G47 5 ? 1_555 72.1 ? 12 O ? F HOH . ? A HOH 16 ? 1_555 CA ? E CA . ? A CA 11 ? 1_555 O6 ? B G47 5 ? B G47 5 ? 1_555 123.2 ? 13 O ? F HOH . ? A HOH 21 ? 1_555 CA ? E CA . ? A CA 11 ? 1_555 O6 ? B G47 5 ? B G47 5 ? 1_555 76.3 ? 14 O ? F HOH . ? A HOH 26 ? 1_555 CA ? E CA . ? A CA 11 ? 1_555 O6 ? B G47 5 ? B G47 5 ? 1_555 119.9 ? 15 O ? F HOH . ? A HOH 30 ? 1_555 CA ? E CA . ? A CA 11 ? 1_555 O6 ? B G47 5 ? B G47 5 ? 1_555 145.0 ? 16 O6 ? A G47 5 ? A G47 5 ? 1_555 CA ? E CA . ? A CA 11 ? 1_555 O ? G HOH . ? B HOH 359 ? 1_555 119.2 ? 17 O ? F HOH . ? A HOH 16 ? 1_555 CA ? E CA . ? A CA 11 ? 1_555 O ? G HOH . ? B HOH 359 ? 1_555 157.1 ? 18 O ? F HOH . ? A HOH 21 ? 1_555 CA ? E CA . ? A CA 11 ? 1_555 O ? G HOH . ? B HOH 359 ? 1_555 99.7 ? 19 O ? F HOH . ? A HOH 26 ? 1_555 CA ? E CA . ? A CA 11 ? 1_555 O ? G HOH . ? B HOH 359 ? 1_555 77.5 ? 20 O ? F HOH . ? A HOH 30 ? 1_555 CA ? E CA . ? A CA 11 ? 1_555 O ? G HOH . ? B HOH 359 ? 1_555 79.2 ? 21 O6 ? B G47 5 ? B G47 5 ? 1_555 CA ? E CA . ? A CA 11 ? 1_555 O ? G HOH . ? B HOH 359 ? 1_555 78.5 ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id CA _struct_site.pdbx_auth_seq_id 11 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE CA A 11' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 G47 A 5 ? G47 A 5 . ? 1_555 ? 2 AC1 7 HOH F . ? HOH A 16 . ? 1_555 ? 3 AC1 7 HOH F . ? HOH A 21 . ? 1_555 ? 4 AC1 7 HOH F . ? HOH A 26 . ? 1_555 ? 5 AC1 7 HOH F . ? HOH A 30 . ? 1_555 ? 6 AC1 7 G47 B 5 ? G47 B 5 . ? 1_555 ? 7 AC1 7 HOH G . ? HOH B 359 . ? 1_555 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O5'" _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 DC _pdbx_validate_symm_contact.auth_seq_id_1 1 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OP1 _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 DC _pdbx_validate_symm_contact.auth_seq_id_2 6 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_456 _pdbx_validate_symm_contact.dist 2.18 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 2 ? ? 0.068 'SIDE CHAIN' 2 1 DA A 3 ? ? 0.056 'SIDE CHAIN' 3 1 DC A 7 ? ? 0.073 'SIDE CHAIN' 4 1 DG A 9 ? ? 0.095 'SIDE CHAIN' 5 1 DA B 3 ? ? 0.052 'SIDE CHAIN' 6 1 DC B 6 ? ? 0.059 'SIDE CHAIN' 7 1 DC B 7 ? ? 0.088 'SIDE CHAIN' 8 1 DA C 3 ? ? 0.069 'SIDE CHAIN' 9 1 DC C 7 ? ? 0.101 'SIDE CHAIN' 10 1 DG C 9 ? ? 0.062 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A G47 5 A G47 5 ? DG ? 2 B G47 5 B G47 5 ? DG ? 3 C G47 5 C G47 5 ? DG ? 4 D G47 5 D G47 5 ? DG ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CA CA CA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 G47 P P N N 145 G47 O1P O N N 146 G47 O2P O N N 147 G47 O3P O N N 148 G47 "O5'" O N N 149 G47 "C5'" C N N 150 G47 "C4'" C N R 151 G47 "O4'" O N N 152 G47 "C3'" C N S 153 G47 "O3'" O N N 154 G47 "C2'" C N N 155 G47 "C1'" C N R 156 G47 N9 N Y N 157 G47 C8 C Y N 158 G47 N7 N Y N 159 G47 C5 C Y N 160 G47 C6 C N N 161 G47 O6 O N N 162 G47 N1 N N N 163 G47 C2 C N N 164 G47 N2 N N N 165 G47 N3 N N N 166 G47 C4 C Y N 167 G47 C6A C N N 168 G47 C7A C N N 169 G47 SG S N N 170 G47 H1P H N N 171 G47 H3P H N N 172 G47 "H5'1" H N N 173 G47 "H5'2" H N N 174 G47 "H4'" H N N 175 G47 "H3'" H N N 176 G47 HA H N N 177 G47 "H2'1" H N N 178 G47 "H2'2" H N N 179 G47 "H1'" H N N 180 G47 H8 H N N 181 G47 H1 H N N 182 G47 H2 H N N 183 G47 H6A1 H N N 184 G47 H6A2 H N N 185 G47 H7A1 H N N 186 G47 H7A2 H N N 187 G47 HS1 H N N 188 HOH O O N N 189 HOH H1 H N N 190 HOH H2 H N N 191 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 G47 P O1P sing N N 150 G47 P O2P doub N N 151 G47 P O3P sing N N 152 G47 P "O5'" sing N N 153 G47 O1P H1P sing N N 154 G47 O3P H3P sing N N 155 G47 "O5'" "C5'" sing N N 156 G47 "C5'" "C4'" sing N N 157 G47 "C5'" "H5'1" sing N N 158 G47 "C5'" "H5'2" sing N N 159 G47 "C4'" "O4'" sing N N 160 G47 "C4'" "C3'" sing N N 161 G47 "C4'" "H4'" sing N N 162 G47 "O4'" "C1'" sing N N 163 G47 "C3'" "O3'" sing N N 164 G47 "C3'" "C2'" sing N N 165 G47 "C3'" "H3'" sing N N 166 G47 "O3'" HA sing N N 167 G47 "C2'" "C1'" sing N N 168 G47 "C2'" "H2'1" sing N N 169 G47 "C2'" "H2'2" sing N N 170 G47 "C1'" N9 sing N N 171 G47 "C1'" "H1'" sing N N 172 G47 N9 C8 sing Y N 173 G47 N9 C4 sing Y N 174 G47 C8 N7 doub Y N 175 G47 C8 H8 sing N N 176 G47 N7 C5 sing Y N 177 G47 C5 C6 sing N N 178 G47 C5 C4 doub Y N 179 G47 C6 O6 doub N N 180 G47 C6 N1 sing N N 181 G47 N1 C2 sing N N 182 G47 N1 H1 sing N N 183 G47 C2 N2 sing N N 184 G47 C2 N3 doub N N 185 G47 N2 C6A sing N N 186 G47 N2 H2 sing N N 187 G47 N3 C4 sing N N 188 G47 C6A C7A sing N N 189 G47 C6A H6A1 sing N N 190 G47 C6A H6A2 sing N N 191 G47 C7A SG sing N N 192 G47 C7A H7A1 sing N N 193 G47 C7A H7A2 sing N N 194 G47 HS1 SG sing N N 195 HOH O H1 sing N N 196 HOH O H2 sing N N 197 # _ndb_struct_conf_na.entry_id 1CW9 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.199 -0.138 0.186 -2.554 -15.186 1.920 1 A_DC1:DG10_B A 1 ? B 10 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.262 -0.109 0.025 1.111 -8.912 -0.466 2 A_DC2:DG9_B A 2 ? B 9 ? 19 1 1 A DA 3 1_555 B DT 8 1_555 0.027 -0.016 0.329 2.958 -5.269 0.982 3 A_DA3:DT8_B A 3 ? B 8 ? 20 1 1 A DG 4 1_555 B DC 7 1_555 -0.085 -0.177 0.331 11.999 -6.704 -1.080 4 A_DG4:DC7_B A 4 ? B 7 ? 19 1 1 A G47 5 1_555 B DC 6 1_555 -0.452 -0.085 0.294 0.860 -15.214 3.018 5 A_G475:DC6_B A 5 ? B 6 ? 19 1 1 A DC 6 1_555 B G47 5 1_555 0.343 -0.110 0.273 -2.401 -8.750 1.213 6 A_DC6:G475_B A 6 ? B 5 ? 19 1 1 A DC 7 1_555 B DG 4 1_555 0.143 -0.123 0.468 -12.779 -8.194 -2.503 7 A_DC7:DG4_B A 7 ? B 4 ? 19 1 1 A DT 8 1_555 B DA 3 1_555 -0.030 -0.089 0.119 -1.558 -6.799 -1.130 8 A_DT8:DA3_B A 8 ? B 3 ? 20 1 1 A DG 9 1_555 B DC 2 1_555 -0.289 -0.119 0.078 -4.843 -15.199 1.381 9 A_DG9:DC2_B A 9 ? B 2 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 -0.137 -0.157 0.174 1.602 -18.142 1.486 10 A_DG10:DC1_B A 10 ? B 1 ? 19 1 1 C DC 1 1_555 D DG 10 1_555 0.082 -0.137 0.226 -7.445 -11.540 0.520 11 C_DC1:DG10_D C 1 ? D 10 ? 19 1 1 C DC 2 1_555 D DG 9 1_555 0.200 -0.159 -0.068 2.444 -8.081 -0.983 12 C_DC2:DG9_D C 2 ? D 9 ? 19 1 1 C DA 3 1_555 D DT 8 1_555 0.124 -0.139 0.167 4.393 -8.323 -2.085 13 C_DA3:DT8_D C 3 ? D 8 ? 20 1 1 C DG 4 1_555 D DC 7 1_555 -0.172 -0.175 0.373 8.521 -11.911 0.224 14 C_DG4:DC7_D C 4 ? D 7 ? 19 1 1 C G47 5 1_555 D DC 6 1_555 -0.208 -0.126 0.344 4.770 -7.001 0.582 15 C_G475:DC6_D C 5 ? D 6 ? 19 1 1 C DC 6 1_555 D G47 5 1_555 1.676 2.570 0.533 6.150 -32.191 56.064 16 C_DC6:G475_D C 6 ? D 5 ? ? ? 1 C DC 7 1_555 D DG 4 1_555 0.184 -0.096 0.312 -11.194 -8.217 -0.632 17 C_DC7:DG4_D C 7 ? D 4 ? 19 1 1 C DT 8 1_555 D DA 3 1_555 -0.017 -0.159 0.229 -6.728 -10.293 1.748 18 C_DT8:DA3_D C 8 ? D 3 ? 20 1 1 C DG 9 1_555 D DC 2 1_555 -0.285 -0.133 0.075 -5.381 -9.394 -0.620 19 C_DG9:DC2_D C 9 ? D 2 ? 19 1 1 C DG 10 1_555 D DC 1 1_555 -0.142 -0.070 0.244 5.620 -12.557 2.490 20 C_DG10:DC1_D C 10 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DC 2 1_555 B DG 9 1_555 0.208 2.233 3.394 7.548 3.786 40.170 2.744 0.588 3.562 5.440 -10.845 41.012 1 AA_DC1DC2:DG9DG10_BB A 1 ? B 10 ? A 2 ? B 9 ? 1 A DC 2 1_555 B DG 9 1_555 A DA 3 1_555 B DT 8 1_555 0.033 2.707 3.264 -3.229 -4.188 45.233 3.852 -0.315 3.006 -5.423 4.181 45.525 2 AA_DC2DA3:DT8DG9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A DA 3 1_555 B DT 8 1_555 A DG 4 1_555 B DC 7 1_555 0.412 0.646 3.158 -0.985 5.269 23.874 -0.088 -1.274 3.204 12.537 2.344 24.460 3 AA_DA3DG4:DC7DT8_BB A 3 ? B 8 ? A 4 ? B 7 ? 1 A DG 4 1_555 B DC 7 1_555 A G47 5 1_555 B DC 6 1_555 -0.081 0.239 3.563 -1.111 1.628 41.141 0.148 -0.016 3.571 2.315 1.579 41.186 4 AA_DG4G475:DC6DC7_BB A 4 ? B 7 ? A 5 ? B 6 ? 1 A G47 5 1_555 B DC 6 1_555 A DC 6 1_555 B G47 5 1_555 -0.069 -0.067 3.468 0.920 5.469 35.289 -0.946 0.254 3.417 8.953 -1.505 35.708 5 AA_G475DC6:G475DC6_BB A 5 ? B 6 ? A 6 ? B 5 ? 1 A DC 6 1_555 B G47 5 1_555 A DC 7 1_555 B DG 4 1_555 -0.046 1.160 3.604 -1.346 -3.742 45.316 1.860 -0.070 3.502 -4.845 1.743 45.481 6 AA_DC6DC7:DG4G475_BB A 6 ? B 5 ? A 7 ? B 4 ? 1 A DC 7 1_555 B DG 4 1_555 A DT 8 1_555 B DA 3 1_555 -0.432 0.683 3.079 2.738 4.229 24.125 0.367 1.811 3.084 9.980 -6.461 24.638 7 AA_DC7DT8:DA3DG4_BB A 7 ? B 4 ? A 8 ? B 3 ? 1 A DT 8 1_555 B DA 3 1_555 A DG 9 1_555 B DC 2 1_555 -0.006 3.053 3.310 1.371 -6.166 50.142 3.997 0.100 2.938 -7.242 -1.610 50.513 8 AA_DT8DG9:DC2DA3_BB A 8 ? B 3 ? A 9 ? B 2 ? 1 A DG 9 1_555 B DC 2 1_555 A DG 10 1_555 B DC 1 1_555 0.686 0.983 3.210 -3.865 6.814 33.764 0.602 -1.747 3.245 11.540 6.546 34.635 9 AA_DG9DG10:DC1DC2_BB A 9 ? B 2 ? A 10 ? B 1 ? 1 C DC 1 1_555 D DG 10 1_555 C DC 2 1_555 D DG 9 1_555 -0.199 0.530 3.079 4.869 8.552 28.383 -0.669 1.348 3.032 16.814 -9.573 30.008 10 CC_DC1DC2:DG9DG10_DD C 1 ? D 10 ? C 2 ? D 9 ? 1 C DC 2 1_555 D DG 9 1_555 C DA 3 1_555 D DT 8 1_555 -0.051 2.665 3.264 -1.038 -5.907 50.239 3.518 -0.010 2.954 -6.928 1.218 50.573 11 CC_DC2DA3:DT8DG9_DD C 2 ? D 9 ? C 3 ? D 8 ? 1 C DA 3 1_555 D DT 8 1_555 C DG 4 1_555 D DC 7 1_555 0.095 0.436 3.199 -1.770 3.846 27.446 -0.004 -0.618 3.216 8.045 3.702 27.765 12 CC_DA3DG4:DC7DT8_DD C 3 ? D 8 ? C 4 ? D 7 ? 1 C DG 4 1_555 D DC 7 1_555 C G47 5 1_555 D DC 6 1_555 0.806 -0.108 3.326 1.849 3.463 37.187 -0.634 -1.009 3.338 5.412 -2.890 37.386 13 CC_DG4G475:DC6DC7_DD C 4 ? D 7 ? C 5 ? D 6 ? 1 C G47 5 1_555 D DC 6 1_555 C DC 6 1_555 D G47 5 1_555 2.625 0.516 3.392 8.442 8.821 38.409 -0.391 -2.725 3.883 13.013 -12.453 40.233 14 CC_G475DC6:G475DC6_DD C 5 ? D 6 ? C 6 ? D 5 ? 1 C DC 6 1_555 D G47 5 1_555 C DC 7 1_555 D DG 4 1_555 -2.796 0.214 3.534 -4.189 10.335 29.847 -1.784 4.219 3.748 19.239 7.799 31.818 15 CC_DC6DC7:DG4G475_DD C 6 ? D 5 ? C 7 ? D 4 ? 1 C DC 7 1_555 D DG 4 1_555 C DT 8 1_555 D DA 3 1_555 -0.394 0.518 3.181 0.426 5.216 27.176 -0.164 0.925 3.216 10.972 -0.897 27.666 16 CC_DC7DT8:DA3DG4_DD C 7 ? D 4 ? C 8 ? D 3 ? 1 C DT 8 1_555 D DA 3 1_555 C DG 9 1_555 D DC 2 1_555 -0.255 2.846 3.232 -1.349 -6.380 49.862 3.780 0.209 2.876 -7.530 1.592 50.260 17 CC_DT8DG9:DC2DA3_DD C 8 ? D 3 ? C 9 ? D 2 ? 1 C DG 9 1_555 D DC 2 1_555 C DG 10 1_555 D DC 1 1_555 0.556 0.878 3.102 -5.464 11.812 28.253 -0.604 -2.077 3.060 22.735 10.516 31.051 18 CC_DG9DG10:DC1DC2_DD C 9 ? D 2 ? C 10 ? D 1 ? # _pdbx_initial_refinement_model.accession_code 1BD1 _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details BDJ017 # _atom_sites.entry_id 1CW9 _atom_sites.fract_transf_matrix[1][1] 0.029040 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023159 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013810 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O P S # loop_