data_1D20 # _entry.id 1D20 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D20 pdb_00001d20 10.2210/pdb1d20/pdb WWPDB D_1000172625 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D20 _pdbx_database_status.recvd_initial_deposition_date 1990-08-01 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Baleja, J.D.' 1 'Sykes, B.D.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Solution structure of phage lambda half-operator DNA by use of NMR, restrained molecular dynamics, and NOE-based refinement.' Biochemistry 29 4828 4839 1990 BICHAW US 0006-2960 0033 ? 2141998 10.1021/bi00472a012 1 'Distance Measurement and Structure Refinement with Noe Data' J.Magn.Reson. 87 375 ? 1990 JOMRA4 US 0022-2364 0624 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Baleja, J.D.' 1 ? primary 'Pon, R.T.' 2 ? primary 'Sykes, B.D.' 3 ? 1 'Baleja, J.D.' 4 ? 1 'Moult, J.' 5 ? 1 'Sykes, B.D.' 6 ? # _cell.entry_id 1D20 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D20 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*CP*TP*AP*TP*CP*AP*CP*CP*G)-3') ; 2979.968 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*GP*GP*TP*GP*AP*TP*AP*GP*A)-3') ; 3109.053 1 ? ? ? ? # loop_ _entity_keywords.entity_id _entity_keywords.text 1 'DEOXYRIBONUCLEIC ACID' 2 'DEOXYRIBONUCLEIC ACID' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DC)(DT)(DA)(DT)(DC)(DA)(DC)(DC)(DG)' TCTATCACCG A ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DG)(DT)(DG)(DA)(DT)(DA)(DG)(DA)' CGGTGATAGA B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DT n 1 4 DA n 1 5 DT n 1 6 DC n 1 7 DA n 1 8 DC n 1 9 DC n 1 10 DG n 2 1 DC n 2 2 DG n 2 3 DG n 2 4 DT n 2 5 DG n 2 6 DA n 2 7 DT n 2 8 DA n 2 9 DG n 2 10 DA n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'CHEMICALLY SYNTHESIZED' 2 1 sample ? ? ? ? ? 'CHEMICALLY SYNTHESIZED' # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1D20 1D20 ? ? ? 2 2 PDB 1D20 1D20 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1D20 A 1 ? 10 ? 1D20 1 ? 10 ? 1 10 2 2 1D20 B 1 ? 10 ? 1D20 11 ? 20 ? 11 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # _pdbx_nmr_refine.entry_id 1D20 _pdbx_nmr_refine.method 'ENERGY MINIMIZATION, MOLECULAR DYNAMICS' _pdbx_nmr_refine.details ;THE STRUCTURE WAS REFINED AGAINST PRIMARY NOE DATA. THE R VALUE IS 0.19 OVER ALL OBSERVED, QUANTIFIED, NOE CROSSPEAK INTENSITIES. THE NOE-BASED PROCEDURE USED TO REFINE THESE STRUCTURES INCLUDED CORRELATION TIME ADJUSTMENT FACTORS, WHICH ARE APPROXIMATELY RELATED TO THE INVERSE OF THE TEMPERATURE FACTORS ASSOCIATED WITH X-RAY CRYSTALLOGRAPHY. THESE VALUES ARE INCLUDED IN THE COLUMN NORMALLY USED FOR TEMPERATURE FACTORS. VALUES OF 0.0 APPEAR FOR NON-HYDROGEN ATOMS, WHICH WERE NOT USED IN THE NMR CALCULATIONS. FURTHER DETAILS ARE GIVEN IN REFERENCE 1. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1D20 _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_software.name GROMOS _pdbx_nmr_software.version ? _pdbx_nmr_software.classification refinement _pdbx_nmr_software.authors 'DE VLIEG ET AL.' _pdbx_nmr_software.ordinal 1 # _exptl.entry_id 1D20 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1D20 _struct.title 'SOLUTION STRUCTURE OF PHAGE LAMBDA HALF-OPERATOR DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D20 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, DOUBLE HELIX, PHAGE LAMBDA HALF-OPERATOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 1 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 1 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 3 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 3 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 4 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 4 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 6 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 6 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 6 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1D20 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1D20 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n B 2 1 DC 1 11 11 DC C B . n B 2 2 DG 2 12 12 DG G B . n B 2 3 DG 3 13 13 DG G B . n B 2 4 DT 4 14 14 DT T B . n B 2 5 DG 5 15 15 DG G B . n B 2 6 DA 6 16 16 DA A B . n B 2 7 DT 7 17 17 DT T B . n B 2 8 DA 8 18 18 DA A B . n B 2 9 DG 9 19 19 DG G B . n B 2 10 DA 10 20 20 DA A B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1991-07-15 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 A DT 1 ? ? C6 A DT 1 ? ? 1.382 1.339 0.043 0.007 N 2 1 N1 A DC 2 ? ? C6 A DC 2 ? ? 1.408 1.367 0.041 0.006 N 3 1 C4 A DT 3 ? ? C5 A DT 3 ? ? 1.387 1.445 -0.058 0.009 N 4 1 C5 A DT 3 ? ? C6 A DT 3 ? ? 1.391 1.339 0.052 0.007 N 5 1 C5 A DA 4 ? ? N7 A DA 4 ? ? 1.329 1.388 -0.059 0.006 N 6 1 N9 A DA 4 ? ? C4 A DA 4 ? ? 1.327 1.374 -0.047 0.006 N 7 1 C4 A DT 5 ? ? C5 A DT 5 ? ? 1.388 1.445 -0.057 0.009 N 8 1 C5 A DT 5 ? ? C6 A DT 5 ? ? 1.386 1.339 0.047 0.007 N 9 1 N1 A DC 6 ? ? C6 A DC 6 ? ? 1.408 1.367 0.041 0.006 N 10 1 C5 A DA 7 ? ? N7 A DA 7 ? ? 1.333 1.388 -0.055 0.006 N 11 1 N9 A DA 7 ? ? C4 A DA 7 ? ? 1.325 1.374 -0.049 0.006 N 12 1 C5 A DC 9 ? ? C6 A DC 9 ? ? 1.391 1.339 0.052 0.008 N 13 1 C5 A DG 10 ? ? N7 A DG 10 ? ? 1.323 1.388 -0.065 0.006 N 14 1 C5 B DG 12 ? ? N7 B DG 12 ? ? 1.334 1.388 -0.054 0.006 N 15 1 C8 B DG 12 ? ? N9 B DG 12 ? ? 1.325 1.374 -0.049 0.007 N 16 1 N9 B DG 12 ? ? C4 B DG 12 ? ? 1.322 1.375 -0.053 0.008 N 17 1 C5 B DG 13 ? ? N7 B DG 13 ? ? 1.327 1.388 -0.061 0.006 N 18 1 N9 B DG 13 ? ? C4 B DG 13 ? ? 1.319 1.375 -0.056 0.008 N 19 1 C4 B DT 14 ? ? C5 B DT 14 ? ? 1.385 1.445 -0.060 0.009 N 20 1 C5 B DT 14 ? ? C6 B DT 14 ? ? 1.393 1.339 0.054 0.007 N 21 1 C5 B DG 15 ? ? N7 B DG 15 ? ? 1.332 1.388 -0.056 0.006 N 22 1 C5 B DA 16 ? ? N7 B DA 16 ? ? 1.329 1.388 -0.059 0.006 N 23 1 N9 B DA 16 ? ? C4 B DA 16 ? ? 1.324 1.374 -0.050 0.006 N 24 1 C4 B DT 17 ? ? C5 B DT 17 ? ? 1.388 1.445 -0.057 0.009 N 25 1 C5 B DT 17 ? ? C6 B DT 17 ? ? 1.387 1.339 0.048 0.007 N 26 1 C5 B DA 18 ? ? N7 B DA 18 ? ? 1.334 1.388 -0.054 0.006 N 27 1 N9 B DA 18 ? ? C4 B DA 18 ? ? 1.330 1.374 -0.044 0.006 N 28 1 C5 B DG 19 ? ? N7 B DG 19 ? ? 1.326 1.388 -0.062 0.006 N 29 1 N9 B DG 19 ? ? C4 B DG 19 ? ? 1.321 1.375 -0.054 0.008 N 30 1 C5 B DA 20 ? ? N7 B DA 20 ? ? 1.327 1.388 -0.061 0.006 N 31 1 N9 B DA 20 ? ? C4 B DA 20 ? ? 1.328 1.374 -0.046 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A DT 1 ? ? C2 A DT 1 ? ? N3 A DT 1 ? ? 119.39 114.60 4.79 0.60 N 2 1 C2 A DT 1 ? ? N3 A DT 1 ? ? C4 A DT 1 ? ? 121.38 127.20 -5.82 0.60 N 3 1 N3 A DT 1 ? ? C4 A DT 1 ? ? C5 A DT 1 ? ? 119.66 115.20 4.46 0.60 N 4 1 N3 A DT 1 ? ? C2 A DT 1 ? ? O2 A DT 1 ? ? 118.50 122.30 -3.80 0.60 N 5 1 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 118.43 122.90 -4.47 0.60 N 6 1 C6 A DC 2 ? ? N1 A DC 2 ? ? C2 A DC 2 ? ? 117.80 120.30 -2.50 0.40 N 7 1 C2 A DC 2 ? ? N3 A DC 2 ? ? C4 A DC 2 ? ? 122.92 119.90 3.02 0.50 N 8 1 N3 A DC 2 ? ? C4 A DC 2 ? ? C5 A DC 2 ? ? 119.49 121.90 -2.41 0.40 N 9 1 N1 A DT 3 ? ? C2 A DT 3 ? ? N3 A DT 3 ? ? 119.68 114.60 5.08 0.60 N 10 1 C2 A DT 3 ? ? N3 A DT 3 ? ? C4 A DT 3 ? ? 121.26 127.20 -5.94 0.60 N 11 1 N3 A DT 3 ? ? C4 A DT 3 ? ? C5 A DT 3 ? ? 119.18 115.20 3.98 0.60 N 12 1 N3 A DT 3 ? ? C2 A DT 3 ? ? O2 A DT 3 ? ? 118.50 122.30 -3.80 0.60 N 13 1 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.64 122.90 -5.26 0.60 N 14 1 N1 A DA 4 ? ? C2 A DA 4 ? ? N3 A DA 4 ? ? 122.76 129.30 -6.54 0.50 N 15 1 C2 A DA 4 ? ? N3 A DA 4 ? ? C4 A DA 4 ? ? 119.59 110.60 8.99 0.50 N 16 1 N3 A DA 4 ? ? C4 A DA 4 ? ? C5 A DA 4 ? ? 119.35 126.80 -7.45 0.70 N 17 1 C5 A DA 4 ? ? N7 A DA 4 ? ? C8 A DA 4 ? ? 107.16 103.90 3.26 0.50 N 18 1 N7 A DA 4 ? ? C8 A DA 4 ? ? N9 A DA 4 ? ? 110.31 113.80 -3.49 0.50 N 19 1 N3 A DA 4 ? ? C4 A DA 4 ? ? N9 A DA 4 ? ? 133.08 127.40 5.68 0.80 N 20 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.27 108.30 1.97 0.30 N 21 1 N1 A DT 5 ? ? C2 A DT 5 ? ? N3 A DT 5 ? ? 119.89 114.60 5.29 0.60 N 22 1 C2 A DT 5 ? ? N3 A DT 5 ? ? C4 A DT 5 ? ? 121.00 127.20 -6.20 0.60 N 23 1 N3 A DT 5 ? ? C4 A DT 5 ? ? C5 A DT 5 ? ? 119.44 115.20 4.24 0.60 N 24 1 N3 A DT 5 ? ? C2 A DT 5 ? ? O2 A DT 5 ? ? 118.21 122.30 -4.09 0.60 N 25 1 C4 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 122.98 119.00 3.98 0.60 N 26 1 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 116.64 122.90 -6.26 0.60 N 27 1 N1 A DA 7 ? ? C2 A DA 7 ? ? N3 A DA 7 ? ? 122.18 129.30 -7.12 0.50 N 28 1 C2 A DA 7 ? ? N3 A DA 7 ? ? C4 A DA 7 ? ? 120.07 110.60 9.47 0.50 N 29 1 N3 A DA 7 ? ? C4 A DA 7 ? ? C5 A DA 7 ? ? 119.21 126.80 -7.59 0.70 N 30 1 C5 A DA 7 ? ? N7 A DA 7 ? ? C8 A DA 7 ? ? 107.09 103.90 3.19 0.50 N 31 1 N7 A DA 7 ? ? C8 A DA 7 ? ? N9 A DA 7 ? ? 109.93 113.80 -3.87 0.50 N 32 1 N3 A DA 7 ? ? C4 A DA 7 ? ? N9 A DA 7 ? ? 133.28 127.40 5.88 0.80 N 33 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.27 108.30 1.97 0.30 N 34 1 C6 A DG 10 ? ? N1 A DG 10 ? ? C2 A DG 10 ? ? 119.02 125.10 -6.08 0.60 N 35 1 C2 A DG 10 ? ? N3 A DG 10 ? ? C4 A DG 10 ? ? 120.76 111.90 8.86 0.50 N 36 1 N3 A DG 10 ? ? C4 A DG 10 ? ? C5 A DG 10 ? ? 121.51 128.60 -7.09 0.50 N 37 1 C5 A DG 10 ? ? C6 A DG 10 ? ? N1 A DG 10 ? ? 119.20 111.50 7.70 0.50 N 38 1 C4 A DG 10 ? ? C5 A DG 10 ? ? N7 A DG 10 ? ? 107.99 110.80 -2.81 0.40 N 39 1 C5 A DG 10 ? ? N7 A DG 10 ? ? C8 A DG 10 ? ? 107.41 104.30 3.11 0.50 N 40 1 N7 A DG 10 ? ? C8 A DG 10 ? ? N9 A DG 10 ? ? 110.02 113.10 -3.08 0.50 N 41 1 N3 A DG 10 ? ? C4 A DG 10 ? ? N9 A DG 10 ? ? 131.89 126.00 5.89 0.60 N 42 1 C5 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 120.48 128.60 -8.12 0.60 N 43 1 C6 B DG 12 ? ? N1 B DG 12 ? ? C2 B DG 12 ? ? 119.76 125.10 -5.34 0.60 N 44 1 C2 B DG 12 ? ? N3 B DG 12 ? ? C4 B DG 12 ? ? 120.87 111.90 8.97 0.50 N 45 1 N3 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 121.12 128.60 -7.48 0.50 N 46 1 C5 B DG 12 ? ? C6 B DG 12 ? ? N1 B DG 12 ? ? 118.22 111.50 6.72 0.50 N 47 1 C4 B DG 12 ? ? C5 B DG 12 ? ? N7 B DG 12 ? ? 107.33 110.80 -3.47 0.40 N 48 1 N3 B DG 12 ? ? C4 B DG 12 ? ? N9 B DG 12 ? ? 131.61 126.00 5.61 0.60 N 49 1 C5 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 121.29 128.60 -7.31 0.60 N 50 1 C6 B DG 13 ? ? N1 B DG 13 ? ? C2 B DG 13 ? ? 119.95 125.10 -5.15 0.60 N 51 1 N1 B DG 13 ? ? C2 B DG 13 ? ? N3 B DG 13 ? ? 120.08 123.90 -3.82 0.60 N 52 1 C2 B DG 13 ? ? N3 B DG 13 ? ? C4 B DG 13 ? ? 121.50 111.90 9.60 0.50 N 53 1 N3 B DG 13 ? ? C4 B DG 13 ? ? C5 B DG 13 ? ? 120.50 128.60 -8.10 0.50 N 54 1 C5 B DG 13 ? ? C6 B DG 13 ? ? N1 B DG 13 ? ? 118.30 111.50 6.80 0.50 N 55 1 C4 B DG 13 ? ? C5 B DG 13 ? ? N7 B DG 13 ? ? 108.08 110.80 -2.72 0.40 N 56 1 N3 B DG 13 ? ? C4 B DG 13 ? ? N9 B DG 13 ? ? 132.58 126.00 6.58 0.60 N 57 1 C5 B DG 13 ? ? C6 B DG 13 ? ? O6 B DG 13 ? ? 120.17 128.60 -8.43 0.60 N 58 1 N1 B DT 14 ? ? C2 B DT 14 ? ? N3 B DT 14 ? ? 119.77 114.60 5.17 0.60 N 59 1 C2 B DT 14 ? ? N3 B DT 14 ? ? C4 B DT 14 ? ? 121.00 127.20 -6.20 0.60 N 60 1 N3 B DT 14 ? ? C4 B DT 14 ? ? C5 B DT 14 ? ? 119.50 115.20 4.30 0.60 N 61 1 N3 B DT 14 ? ? C2 B DT 14 ? ? O2 B DT 14 ? ? 117.98 122.30 -4.32 0.60 N 62 1 C6 B DT 14 ? ? C5 B DT 14 ? ? C7 B DT 14 ? ? 117.75 122.90 -5.15 0.60 N 63 1 C6 B DG 15 ? ? N1 B DG 15 ? ? C2 B DG 15 ? ? 119.42 125.10 -5.68 0.60 N 64 1 C2 B DG 15 ? ? N3 B DG 15 ? ? C4 B DG 15 ? ? 121.01 111.90 9.11 0.50 N 65 1 N3 B DG 15 ? ? C4 B DG 15 ? ? C5 B DG 15 ? ? 120.81 128.60 -7.79 0.50 N 66 1 C5 B DG 15 ? ? C6 B DG 15 ? ? N1 B DG 15 ? ? 118.62 111.50 7.12 0.50 N 67 1 C4 B DG 15 ? ? C5 B DG 15 ? ? N7 B DG 15 ? ? 107.60 110.80 -3.20 0.40 N 68 1 N3 B DG 15 ? ? C4 B DG 15 ? ? N9 B DG 15 ? ? 131.47 126.00 5.47 0.60 N 69 1 C5 B DG 15 ? ? C6 B DG 15 ? ? O6 B DG 15 ? ? 121.05 128.60 -7.55 0.60 N 70 1 N1 B DA 16 ? ? C2 B DA 16 ? ? N3 B DA 16 ? ? 122.60 129.30 -6.70 0.50 N 71 1 C2 B DA 16 ? ? N3 B DA 16 ? ? C4 B DA 16 ? ? 119.50 110.60 8.90 0.50 N 72 1 N3 B DA 16 ? ? C4 B DA 16 ? ? C5 B DA 16 ? ? 119.70 126.80 -7.10 0.70 N 73 1 C5 B DA 16 ? ? N7 B DA 16 ? ? C8 B DA 16 ? ? 107.06 103.90 3.16 0.50 N 74 1 N7 B DA 16 ? ? C8 B DA 16 ? ? N9 B DA 16 ? ? 110.22 113.80 -3.58 0.50 N 75 1 N3 B DA 16 ? ? C4 B DA 16 ? ? N9 B DA 16 ? ? 133.23 127.40 5.83 0.80 N 76 1 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1 B DT 17 ? ? 110.18 108.30 1.88 0.30 N 77 1 N1 B DT 17 ? ? C2 B DT 17 ? ? N3 B DT 17 ? ? 120.11 114.60 5.51 0.60 N 78 1 C2 B DT 17 ? ? N3 B DT 17 ? ? C4 B DT 17 ? ? 120.86 127.20 -6.34 0.60 N 79 1 N3 B DT 17 ? ? C4 B DT 17 ? ? C5 B DT 17 ? ? 119.22 115.20 4.02 0.60 N 80 1 N3 B DT 17 ? ? C2 B DT 17 ? ? O2 B DT 17 ? ? 118.06 122.30 -4.24 0.60 N 81 1 C6 B DT 17 ? ? C5 B DT 17 ? ? C7 B DT 17 ? ? 117.08 122.90 -5.82 0.60 N 82 1 N1 B DA 18 ? ? C2 B DA 18 ? ? N3 B DA 18 ? ? 123.29 129.30 -6.01 0.50 N 83 1 C2 B DA 18 ? ? N3 B DA 18 ? ? C4 B DA 18 ? ? 119.35 110.60 8.75 0.50 N 84 1 N3 B DA 18 ? ? C4 B DA 18 ? ? C5 B DA 18 ? ? 119.48 126.80 -7.32 0.70 N 85 1 N7 B DA 18 ? ? C8 B DA 18 ? ? N9 B DA 18 ? ? 110.30 113.80 -3.50 0.50 N 86 1 N3 B DA 18 ? ? C4 B DA 18 ? ? N9 B DA 18 ? ? 132.98 127.40 5.58 0.80 N 87 1 C6 B DG 19 ? ? N1 B DG 19 ? ? C2 B DG 19 ? ? 119.60 125.10 -5.50 0.60 N 88 1 C2 B DG 19 ? ? N3 B DG 19 ? ? C4 B DG 19 ? ? 120.94 111.90 9.04 0.50 N 89 1 N3 B DG 19 ? ? C4 B DG 19 ? ? C5 B DG 19 ? ? 121.21 128.60 -7.39 0.50 N 90 1 C5 B DG 19 ? ? C6 B DG 19 ? ? N1 B DG 19 ? ? 118.60 111.50 7.10 0.50 N 91 1 C4 B DG 19 ? ? C5 B DG 19 ? ? N7 B DG 19 ? ? 107.53 110.80 -3.27 0.40 N 92 1 C5 B DG 19 ? ? N7 B DG 19 ? ? C8 B DG 19 ? ? 107.41 104.30 3.11 0.50 N 93 1 N7 B DG 19 ? ? C8 B DG 19 ? ? N9 B DG 19 ? ? 110.08 113.10 -3.02 0.50 N 94 1 N3 B DG 19 ? ? C4 B DG 19 ? ? N9 B DG 19 ? ? 131.16 126.00 5.16 0.60 N 95 1 C5 B DG 19 ? ? C6 B DG 19 ? ? O6 B DG 19 ? ? 121.00 128.60 -7.60 0.60 N 96 1 N1 B DA 20 ? ? C2 B DA 20 ? ? N3 B DA 20 ? ? 122.95 129.30 -6.35 0.50 N 97 1 C2 B DA 20 ? ? N3 B DA 20 ? ? C4 B DA 20 ? ? 119.27 110.60 8.67 0.50 N 98 1 N3 B DA 20 ? ? C4 B DA 20 ? ? C5 B DA 20 ? ? 120.22 126.80 -6.58 0.70 N 99 1 C5 B DA 20 ? ? N7 B DA 20 ? ? C8 B DA 20 ? ? 107.28 103.90 3.38 0.50 N 100 1 N7 B DA 20 ? ? C8 B DA 20 ? ? N9 B DA 20 ? ? 109.82 113.80 -3.98 0.50 N 101 1 N3 B DA 20 ? ? C4 B DA 20 ? ? N9 B DA 20 ? ? 133.17 127.40 5.77 0.80 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 2 ? ? 0.121 'SIDE CHAIN' 2 1 DT A 3 ? ? 0.127 'SIDE CHAIN' 3 1 DA A 4 ? ? 0.074 'SIDE CHAIN' 4 1 DT A 5 ? ? 0.092 'SIDE CHAIN' 5 1 DC A 6 ? ? 0.083 'SIDE CHAIN' 6 1 DA A 7 ? ? 0.054 'SIDE CHAIN' 7 1 DC A 9 ? ? 0.093 'SIDE CHAIN' 8 1 DC B 11 ? ? 0.076 'SIDE CHAIN' 9 1 DG B 12 ? ? 0.058 'SIDE CHAIN' 10 1 DG B 13 ? ? 0.073 'SIDE CHAIN' 11 1 DT B 14 ? ? 0.104 'SIDE CHAIN' 12 1 DG B 15 ? ? 0.075 'SIDE CHAIN' 13 1 DA B 16 ? ? 0.087 'SIDE CHAIN' 14 1 DT B 17 ? ? 0.102 'SIDE CHAIN' 15 1 DA B 18 ? ? 0.077 'SIDE CHAIN' # _ndb_struct_conf_na.entry_id 1D20 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 10 1_555 -0.266 -0.063 0.346 13.072 -21.671 -8.703 1 A_DT1:DA20_B A 1 ? B 20 ? 20 1 1 A DC 2 1_555 B DG 9 1_555 0.334 -0.177 0.225 -0.424 -23.112 -4.202 2 A_DC2:DG19_B A 2 ? B 19 ? 19 1 1 A DT 3 1_555 B DA 8 1_555 -0.204 -0.027 0.414 -10.872 -17.338 -5.979 3 A_DT3:DA18_B A 3 ? B 18 ? 20 1 1 A DA 4 1_555 B DT 7 1_555 0.032 -0.073 0.469 -4.735 -10.218 -6.930 4 A_DA4:DT17_B A 4 ? B 17 ? 20 1 1 A DT 5 1_555 B DA 6 1_555 0.102 -0.089 0.489 -3.372 -9.871 -5.845 5 A_DT5:DA16_B A 5 ? B 16 ? 20 1 1 A DC 6 1_555 B DG 5 1_555 0.584 -0.180 -0.055 -0.329 -13.032 -3.140 6 A_DC6:DG15_B A 6 ? B 15 ? 19 1 1 A DA 7 1_555 B DT 4 1_555 -0.262 -0.106 0.009 -7.646 -12.637 -5.140 7 A_DA7:DT14_B A 7 ? B 14 ? 20 1 1 A DC 8 1_555 B DG 3 1_555 0.414 -0.147 0.058 0.713 -10.582 -5.668 8 A_DC8:DG13_B A 8 ? B 13 ? 19 1 1 A DC 9 1_555 B DG 2 1_555 0.555 -0.189 -0.047 -2.136 -16.843 -2.143 9 A_DC9:DG12_B A 9 ? B 12 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 -0.131 -0.080 0.033 -12.043 -10.833 -5.072 10 A_DG10:DC11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 10 1_555 A DC 2 1_555 B DG 9 1_555 -0.048 -0.334 3.499 2.849 1.284 43.141 -0.588 0.362 3.478 1.744 -3.869 43.248 1 AA_DT1DC2:DG19DA20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DC 2 1_555 B DG 9 1_555 A DT 3 1_555 B DA 8 1_555 -0.188 -0.118 3.457 -1.522 2.300 31.683 -0.659 0.050 3.445 4.202 2.781 31.800 2 AA_DC2DT3:DA18DG19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DT 3 1_555 B DA 8 1_555 A DA 4 1_555 B DT 7 1_555 0.086 0.654 3.078 -1.696 1.019 39.946 0.847 -0.310 3.087 1.490 2.481 39.993 3 AA_DT3DA4:DT17DA18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DA 4 1_555 B DT 7 1_555 A DT 5 1_555 B DA 6 1_555 0.027 -0.263 3.283 -0.403 -2.070 33.192 -0.111 -0.115 3.292 -3.619 0.704 33.257 4 AA_DA4DT5:DA16DT17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DT 5 1_555 B DA 6 1_555 A DC 6 1_555 B DG 5 1_555 0.111 -0.165 3.129 4.649 -1.277 39.541 -0.100 0.354 3.126 -1.879 -6.841 39.822 5 AA_DT5DC6:DG15DA16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DC 6 1_555 B DG 5 1_555 A DA 7 1_555 B DT 4 1_555 -0.044 -0.292 3.313 -0.385 13.527 30.180 -2.805 0.011 2.919 24.490 0.698 33.011 6 AA_DC6DA7:DT14DG15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DA 7 1_555 B DT 4 1_555 A DC 8 1_555 B DG 3 1_555 -0.408 -0.117 3.037 -0.583 -0.358 36.069 -0.141 0.582 3.044 -0.578 0.941 36.075 7 AA_DA7DC8:DG13DT14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DC 8 1_555 B DG 3 1_555 A DC 9 1_555 B DG 2 1_555 0.765 -0.653 3.204 4.921 3.294 36.073 -1.490 -0.551 3.207 5.276 -7.881 36.540 8 AA_DC8DC9:DG12DG13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DC 9 1_555 B DG 2 1_555 A DG 10 1_555 B DC 1 1_555 -0.015 -0.580 3.320 -0.239 14.355 31.656 -3.136 -0.012 2.804 24.783 0.413 34.684 9 AA_DC9DG10:DC11DG12_BB A 9 ? B 12 ? A 10 ? B 11 ? #