data_1D59 # _entry.id 1D59 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D59 pdb_00001d59 10.2210/pdb1d59/pdb RCSB UDL018 ? ? WWPDB D_1000172660 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1993-04-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D59 _pdbx_database_status.recvd_initial_deposition_date 1992-02-25 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kang, C.' 1 'Zhang, X.' 2 'Ratliff, R.' 3 'Moyzis, R.' 4 'Rich, A.' 5 # _citation.id primary _citation.title 'Crystal structure of four-stranded Oxytricha telomeric DNA.' _citation.journal_abbrev Nature _citation.journal_volume 356 _citation.page_first 126 _citation.page_last 131 _citation.year 1992 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 1545863 _citation.pdbx_database_id_DOI 10.1038/356126a0 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kang, C.' 1 ? primary 'Zhang, X.' 2 ? primary 'Ratliff, R.' 3 ? primary 'Moyzis, R.' 4 ? primary 'Rich, A.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3') ; _entity.formula_weight 3805.460 _entity.pdbx_number_of_molecules 4 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DG)(DG)(DT)(DT)(DT)(DT)(DG)(DG)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can GGGGTTTTGGGG _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DT n 1 7 DT n 1 8 DT n 1 9 DG n 1 10 DG n 1 11 DG n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DG 11 11 11 DG G A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DG 1 13 13 DG G B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DG 3 15 15 DG G B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DT 5 17 17 DT T B . n B 1 6 DT 6 18 18 DT T B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DG 9 21 21 DG G B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DG 11 23 23 DG G B . n B 1 12 DG 12 24 24 DG G B . n C 1 1 DG 1 25 25 DG G C . n C 1 2 DG 2 26 26 DG G C . n C 1 3 DG 3 27 27 DG G C . n C 1 4 DG 4 28 28 DG G C . n C 1 5 DT 5 29 29 DT T C . n C 1 6 DT 6 30 30 DT T C . n C 1 7 DT 7 31 31 DT T C . n C 1 8 DT 8 32 32 DT T C . n C 1 9 DG 9 33 33 DG G C . n C 1 10 DG 10 34 34 DG G C . n C 1 11 DG 11 35 35 DG G C . n C 1 12 DG 12 36 36 DG G C . n D 1 1 DG 1 37 37 DG G D . n D 1 2 DG 2 38 38 DG G D . n D 1 3 DG 3 39 39 DG G D . n D 1 4 DG 4 40 40 DG G D . n D 1 5 DT 5 41 41 DT T D . n D 1 6 DT 6 42 42 DT T D . n D 1 7 DT 7 43 43 DT T D . n D 1 8 DT 8 44 44 DT T D . n D 1 9 DG 9 45 45 DG G D . n D 1 10 DG 10 46 46 DG G D . n D 1 11 DG 11 47 47 DG G D . n D 1 12 DG 12 48 48 DG G D . n # _software.name X-PLOR _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1D59 _cell.length_a 27.730 _cell.length_b 49.570 _cell.length_c 97.270 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D59 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1D59 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_percent_sol 43.99 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 SPERMINE ? ? ? 1 5 1 'K CACODYLATE' ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SDMS _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1D59 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 2.000 _reflns.d_resolution_low ? _reflns.d_resolution_high 2.300 _reflns.number_obs 2471 _reflns.number_all 4963 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1D59 _refine.ls_number_reflns_obs 2471 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 2.300 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1950000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1950000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1132 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1132 _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 10.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.016 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 3.99 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1D59 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D59 _struct.title 'CRYSTAL STRUCTURE OF 4-STRANDED OXYTRICHA TELOMERIC DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D59 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'U-DNA, QUADRUPLE HELIX, TETRAPLEX, LOOP, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1D59 _struct_ref.pdbx_db_accession 1D59 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1D59 A 1 ? 12 ? 1D59 1 ? 12 ? 1 12 2 1 1D59 B 1 ? 12 ? 1D59 13 ? 24 ? 13 24 3 1 1D59 C 1 ? 12 ? 1D59 25 ? 36 ? 25 36 4 1 1D59 D 1 ? 12 ? 1D59 37 ? 48 ? 37 48 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1 C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id 1 2 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 12 N2 ? ? A DG 1 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 12 N1 ? ? A DG 1 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DG 4 N7 ? ? A DG 1 B DG 16 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 11 O6 ? ? A DG 2 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 11 N7 ? ? A DG 2 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 N7 ? ? ? 1_555 B DG 3 N2 ? ? A DG 2 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DG 3 N1 ? ? A DG 2 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 10 N2 ? ? A DG 3 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 10 N1 ? ? A DG 3 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DG 2 N7 ? ? A DG 3 B DG 14 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog11 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 4 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 4 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 10 N1 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog14 hydrog ? ? A DG 4 N7 ? ? ? 1_555 B DG 1 N2 ? ? A DG 4 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DG 1 N1 ? ? A DG 4 B DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DG 1 O6 ? ? A DG 9 B DG 13 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog17 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DG 1 N1 ? ? A DG 9 B DG 13 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog18 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DG 11 O6 ? ? A DG 9 B DG 23 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog19 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DG 12 O6 ? ? A DG 9 B DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DG 12 N7 ? ? A DG 9 B DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 10 N7 ? ? ? 1_555 B DG 11 N2 ? ? A DG 10 B DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DG 11 N1 ? ? A DG 10 B DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DG 10 O6 ? ? A DG 11 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DG 10 N7 ? ? A DG 11 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 12 N7 ? ? ? 1_555 B DG 9 N2 ? ? A DG 12 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DG 9 N1 ? ? A DG 12 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? B DG 1 N7 ? ? ? 1_555 B DG 12 N2 ? ? B DG 13 B DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? B DG 1 O6 ? ? ? 1_555 B DG 12 N1 ? ? B DG 13 B DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? B DG 2 N1 ? ? ? 1_555 B DG 11 O6 ? ? B DG 14 B DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? B DG 2 N2 ? ? ? 1_555 B DG 11 N7 ? ? B DG 14 B DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? B DG 3 N7 ? ? ? 1_555 B DG 10 N2 ? ? B DG 15 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? B DG 3 O6 ? ? ? 1_555 B DG 10 N1 ? ? B DG 15 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? B DG 4 N1 ? ? ? 1_555 B DG 9 O6 ? ? B DG 16 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? B DG 4 N2 ? ? ? 1_555 B DG 9 N7 ? ? B DG 16 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? C DG 1 N7 ? ? ? 1_555 C DG 12 N2 ? ? C DG 25 C DG 36 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? C DG 1 O6 ? ? ? 1_555 C DG 12 N1 ? ? C DG 25 C DG 36 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog37 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DG 4 O6 ? ? C DG 25 D DG 40 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog38 hydrog ? ? C DG 2 N1 ? ? ? 1_555 C DG 11 O6 ? ? C DG 26 C DG 35 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog39 hydrog ? ? C DG 2 N2 ? ? ? 1_555 C DG 11 N7 ? ? C DG 26 C DG 35 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog40 hydrog ? ? C DG 2 N7 ? ? ? 1_555 D DG 3 N2 ? ? C DG 26 D DG 39 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog41 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DG 3 N1 ? ? C DG 26 D DG 39 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog42 hydrog ? ? C DG 3 N7 ? ? ? 1_555 C DG 10 N2 ? ? C DG 27 C DG 34 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog43 hydrog ? ? C DG 3 O6 ? ? ? 1_555 C DG 10 N1 ? ? C DG 27 C DG 34 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog44 hydrog ? ? C DG 3 N1 ? ? ? 1_555 D DG 2 N7 ? ? C DG 27 D DG 38 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog45 hydrog ? ? C DG 4 N1 ? ? ? 1_555 C DG 9 O6 ? ? C DG 28 C DG 33 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog46 hydrog ? ? C DG 4 N2 ? ? ? 1_555 C DG 9 N7 ? ? C DG 28 C DG 33 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog47 hydrog ? ? C DG 4 N7 ? ? ? 1_555 D DG 1 N2 ? ? C DG 28 D DG 37 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog48 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DG 1 N1 ? ? C DG 28 D DG 37 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog49 hydrog ? ? C DG 9 N2 ? ? ? 1_555 D DG 11 O6 ? ? C DG 33 D DG 47 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog50 hydrog ? ? C DG 9 N1 ? ? ? 1_555 D DG 12 O6 ? ? C DG 33 D DG 48 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog51 hydrog ? ? C DG 9 N2 ? ? ? 1_555 D DG 12 N7 ? ? C DG 33 D DG 48 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog52 hydrog ? ? C DG 10 N7 ? ? ? 1_555 D DG 11 N2 ? ? C DG 34 D DG 47 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog53 hydrog ? ? C DG 11 N1 ? ? ? 1_555 D DG 10 O6 ? ? C DG 35 D DG 46 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog54 hydrog ? ? C DG 11 N2 ? ? ? 1_555 D DG 10 N7 ? ? C DG 35 D DG 46 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog55 hydrog ? ? C DG 12 N7 ? ? ? 1_555 D DG 9 N1 ? ? C DG 36 D DG 45 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog56 hydrog ? ? D DG 1 N7 ? ? ? 1_555 D DG 12 N1 ? ? D DG 37 D DG 48 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog57 hydrog ? ? D DG 2 N1 ? ? ? 1_555 D DG 11 O6 ? ? D DG 38 D DG 47 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog58 hydrog ? ? D DG 2 N2 ? ? ? 1_555 D DG 11 N7 ? ? D DG 38 D DG 47 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog59 hydrog ? ? D DG 3 N7 ? ? ? 1_555 D DG 10 N2 ? ? D DG 39 D DG 46 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog60 hydrog ? ? D DG 3 O6 ? ? ? 1_555 D DG 10 N1 ? ? D DG 39 D DG 46 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog61 hydrog ? ? D DG 4 N1 ? ? ? 1_555 D DG 9 O6 ? ? D DG 40 D DG 45 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog62 hydrog ? ? D DG 4 N2 ? ? ? 1_555 D DG 9 N7 ? ? D DG 40 D DG 45 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N7 A DG 3 ? ? H22 A DG 10 ? ? 1.48 2 1 N7 C DG 27 ? ? H22 C DG 34 ? ? 1.54 3 1 N7 A DG 1 ? ? H22 A DG 12 ? ? 1.56 4 1 H22 C DG 28 ? ? N7 C DG 33 ? ? 1.57 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OP2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 DT _pdbx_validate_symm_contact.auth_seq_id_1 5 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OP2 _pdbx_validate_symm_contact.auth_asym_id_2 D _pdbx_validate_symm_contact.auth_comp_id_2 DT _pdbx_validate_symm_contact.auth_seq_id_2 42 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_654 _pdbx_validate_symm_contact.dist 2.14 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.52 108.30 4.22 0.30 N 2 1 "C3'" A DG 1 ? ? "O3'" A DG 1 ? ? P A DG 2 ? ? 129.55 119.70 9.85 1.20 Y 3 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.04 108.30 3.74 0.30 N 4 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DG 3 ? ? 128.30 119.70 8.60 1.20 Y 5 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.70 108.30 4.40 0.30 N 6 1 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DG 4 ? ? 129.63 119.70 9.93 1.20 Y 7 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.64 108.30 3.34 0.30 N 8 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.20 108.30 2.90 0.30 N 9 1 C2 A DT 5 ? ? N3 A DT 5 ? ? C4 A DT 5 ? ? 122.76 127.20 -4.44 0.60 N 10 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 113.41 108.30 5.11 0.30 N 11 1 N1 A DT 6 ? ? C2 A DT 6 ? ? N3 A DT 6 ? ? 118.26 114.60 3.66 0.60 N 12 1 C2 A DT 6 ? ? N3 A DT 6 ? ? C4 A DT 6 ? ? 122.85 127.20 -4.35 0.60 N 13 1 "C3'" A DT 6 ? ? "O3'" A DT 6 ? ? P A DT 7 ? ? 128.45 119.70 8.75 1.20 Y 14 1 "C1'" A DT 7 ? ? "O4'" A DT 7 ? ? "C4'" A DT 7 ? ? 102.19 110.10 -7.91 1.00 N 15 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.74 108.30 4.44 0.30 N 16 1 C2 A DT 7 ? ? N3 A DT 7 ? ? C4 A DT 7 ? ? 121.75 127.20 -5.45 0.60 N 17 1 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.21 122.90 -3.69 0.60 N 18 1 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 131.04 119.70 11.34 1.20 Y 19 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 112.50 108.30 4.20 0.30 N 20 1 C2 A DT 8 ? ? N3 A DT 8 ? ? C4 A DT 8 ? ? 122.71 127.20 -4.49 0.60 N 21 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.55 108.30 3.25 0.30 N 22 1 "C3'" A DG 9 ? ? "O3'" A DG 9 ? ? P A DG 10 ? ? 127.28 119.70 7.58 1.20 Y 23 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 115.18 108.30 6.88 0.30 N 24 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 111.48 108.30 3.18 0.30 N 25 1 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? "C2'" B DG 13 ? ? 100.51 105.90 -5.39 0.80 N 26 1 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 115.94 108.30 7.64 0.30 N 27 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 111.57 108.30 3.27 0.30 N 28 1 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? N9 B DG 15 ? ? 114.52 108.30 6.22 0.30 N 29 1 "C3'" B DG 15 ? ? "O3'" B DG 15 ? ? P B DG 16 ? ? 127.71 119.70 8.01 1.20 Y 30 1 "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? P B DT 17 ? ? 128.67 119.70 8.97 1.20 Y 31 1 C2 B DT 17 ? ? N3 B DT 17 ? ? C4 B DT 17 ? ? 122.01 127.20 -5.19 0.60 N 32 1 C6 B DT 17 ? ? C5 B DT 17 ? ? C7 B DT 17 ? ? 119.19 122.90 -3.71 0.60 N 33 1 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 113.56 108.30 5.26 0.30 N 34 1 C2 B DT 18 ? ? N3 B DT 18 ? ? C4 B DT 18 ? ? 122.59 127.20 -4.61 0.60 N 35 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 111.24 108.30 2.94 0.30 N 36 1 C2 B DT 19 ? ? N3 B DT 19 ? ? C4 B DT 19 ? ? 122.61 127.20 -4.59 0.60 N 37 1 "C3'" B DT 19 ? ? "O3'" B DT 19 ? ? P B DT 20 ? ? 130.47 119.70 10.77 1.20 Y 38 1 C2 B DT 20 ? ? N3 B DT 20 ? ? C4 B DT 20 ? ? 122.13 127.20 -5.07 0.60 N 39 1 "C3'" B DT 20 ? ? "O3'" B DT 20 ? ? P B DG 21 ? ? 129.55 119.70 9.85 1.20 Y 40 1 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9 B DG 21 ? ? 111.75 108.30 3.45 0.30 N 41 1 "C3'" B DG 21 ? ? "O3'" B DG 21 ? ? P B DG 22 ? ? 127.15 119.70 7.45 1.20 Y 42 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 111.76 108.30 3.46 0.30 N 43 1 "O4'" B DG 23 ? ? "C1'" B DG 23 ? ? N9 B DG 23 ? ? 112.52 108.30 4.22 0.30 N 44 1 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 110.67 108.30 2.37 0.30 N 45 1 "O4'" C DG 25 ? ? "C1'" C DG 25 ? ? N9 C DG 25 ? ? 113.89 108.30 5.59 0.30 N 46 1 "O4'" C DG 26 ? ? "C1'" C DG 26 ? ? N9 C DG 26 ? ? 112.67 108.30 4.37 0.30 N 47 1 "C3'" C DG 26 ? ? "O3'" C DG 26 ? ? P C DG 27 ? ? 129.94 119.70 10.24 1.20 Y 48 1 OP1 C DG 27 ? ? P C DG 27 ? ? OP2 C DG 27 ? ? 109.77 119.60 -9.83 1.50 N 49 1 "C1'" C DG 27 ? ? "O4'" C DG 27 ? ? "C4'" C DG 27 ? ? 100.05 110.10 -10.05 1.00 N 50 1 "O4'" C DG 27 ? ? "C1'" C DG 27 ? ? N9 C DG 27 ? ? 115.96 108.30 7.66 0.30 N 51 1 "C3'" C DG 27 ? ? "O3'" C DG 27 ? ? P C DG 28 ? ? 129.06 119.70 9.36 1.20 Y 52 1 "O4'" C DG 28 ? ? "C1'" C DG 28 ? ? N9 C DG 28 ? ? 110.49 108.30 2.19 0.30 N 53 1 "O4'" C DT 29 ? ? "C4'" C DT 29 ? ? "C3'" C DT 29 ? ? 102.05 104.50 -2.45 0.40 N 54 1 "O4'" C DT 29 ? ? "C1'" C DT 29 ? ? N1 C DT 29 ? ? 113.08 108.30 4.78 0.30 N 55 1 C2 C DT 29 ? ? N3 C DT 29 ? ? C4 C DT 29 ? ? 122.58 127.20 -4.62 0.60 N 56 1 "O4'" C DT 30 ? ? "C1'" C DT 30 ? ? N1 C DT 30 ? ? 112.83 108.30 4.53 0.30 N 57 1 C2 C DT 30 ? ? N3 C DT 30 ? ? C4 C DT 30 ? ? 122.48 127.20 -4.72 0.60 N 58 1 "O4'" C DT 31 ? ? "C1'" C DT 31 ? ? N1 C DT 31 ? ? 111.99 108.30 3.69 0.30 N 59 1 C2 C DT 31 ? ? N3 C DT 31 ? ? C4 C DT 31 ? ? 122.25 127.20 -4.95 0.60 N 60 1 "C3'" C DT 31 ? ? "O3'" C DT 31 ? ? P C DT 32 ? ? 128.18 119.70 8.48 1.20 Y 61 1 "O4'" C DT 32 ? ? "C1'" C DT 32 ? ? N1 C DT 32 ? ? 111.02 108.30 2.72 0.30 N 62 1 C2 C DT 32 ? ? N3 C DT 32 ? ? C4 C DT 32 ? ? 122.84 127.20 -4.36 0.60 N 63 1 "O4'" C DG 33 ? ? "C1'" C DG 33 ? ? N9 C DG 33 ? ? 114.94 108.30 6.64 0.30 N 64 1 "O4'" C DG 34 ? ? "C1'" C DG 34 ? ? N9 C DG 34 ? ? 112.87 108.30 4.57 0.30 N 65 1 "C3'" C DG 34 ? ? "O3'" C DG 34 ? ? P C DG 35 ? ? 128.99 119.70 9.29 1.20 Y 66 1 "C1'" D DG 37 ? ? "O4'" D DG 37 ? ? "C4'" D DG 37 ? ? 103.93 110.10 -6.17 1.00 N 67 1 "O4'" D DG 37 ? ? "C1'" D DG 37 ? ? N9 D DG 37 ? ? 116.02 108.30 7.72 0.30 N 68 1 "O4'" D DG 39 ? ? "C1'" D DG 39 ? ? N9 D DG 39 ? ? 112.11 108.30 3.81 0.30 N 69 1 C2 D DT 41 ? ? N3 D DT 41 ? ? C4 D DT 41 ? ? 122.49 127.20 -4.71 0.60 N 70 1 "O4'" D DT 42 ? ? "C1'" D DT 42 ? ? N1 D DT 42 ? ? 113.22 108.30 4.92 0.30 N 71 1 C2 D DT 42 ? ? N3 D DT 42 ? ? C4 D DT 42 ? ? 122.75 127.20 -4.45 0.60 N 72 1 "O4'" D DT 43 ? ? "C1'" D DT 43 ? ? N1 D DT 43 ? ? 113.06 108.30 4.76 0.30 N 73 1 C2 D DT 43 ? ? N3 D DT 43 ? ? C4 D DT 43 ? ? 122.46 127.20 -4.74 0.60 N 74 1 "C3'" D DT 43 ? ? "O3'" D DT 43 ? ? P D DT 44 ? ? 130.46 119.70 10.76 1.20 Y 75 1 C2 D DT 44 ? ? N3 D DT 44 ? ? C4 D DT 44 ? ? 123.13 127.20 -4.07 0.60 N 76 1 "C3'" D DT 44 ? ? "O3'" D DT 44 ? ? P D DG 45 ? ? 129.71 119.70 10.01 1.20 Y 77 1 "O4'" D DG 45 ? ? "C1'" D DG 45 ? ? N9 D DG 45 ? ? 113.81 108.30 5.51 0.30 N 78 1 "C3'" D DG 45 ? ? "O3'" D DG 45 ? ? P D DG 46 ? ? 128.98 119.70 9.28 1.20 Y 79 1 "O4'" D DG 46 ? ? "C1'" D DG 46 ? ? N9 D DG 46 ? ? 112.43 108.30 4.13 0.30 N 80 1 "C3'" D DG 46 ? ? "O3'" D DG 46 ? ? P D DG 47 ? ? 131.37 119.70 11.67 1.20 Y 81 1 "O4'" D DG 47 ? ? "C1'" D DG 47 ? ? N9 D DG 47 ? ? 112.30 108.30 4.00 0.30 N 82 1 "O4'" D DG 48 ? ? "C1'" D DG 48 ? ? N9 D DG 48 ? ? 111.88 108.30 3.58 0.30 N 83 1 C5 D DG 48 ? ? C6 D DG 48 ? ? N1 D DG 48 ? ? 114.63 111.50 3.13 0.50 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 1 ? ? 0.066 'SIDE CHAIN' 2 1 DG A 3 ? ? 0.072 'SIDE CHAIN' 3 1 DT A 5 ? ? 0.084 'SIDE CHAIN' 4 1 DT A 7 ? ? 0.245 'SIDE CHAIN' 5 1 DT A 8 ? ? 0.107 'SIDE CHAIN' 6 1 DG A 9 ? ? 0.049 'SIDE CHAIN' 7 1 DG A 10 ? ? 0.111 'SIDE CHAIN' 8 1 DG B 16 ? ? 0.050 'SIDE CHAIN' 9 1 DT B 17 ? ? 0.265 'SIDE CHAIN' 10 1 DT B 18 ? ? 0.070 'SIDE CHAIN' 11 1 DT B 19 ? ? 0.127 'SIDE CHAIN' 12 1 DT B 20 ? ? 0.165 'SIDE CHAIN' 13 1 DG B 21 ? ? 0.064 'SIDE CHAIN' 14 1 DG B 24 ? ? 0.075 'SIDE CHAIN' 15 1 DG C 25 ? ? 0.092 'SIDE CHAIN' 16 1 DT C 30 ? ? 0.065 'SIDE CHAIN' 17 1 DT C 31 ? ? 0.183 'SIDE CHAIN' 18 1 DG C 33 ? ? 0.052 'SIDE CHAIN' 19 1 DG C 34 ? ? 0.058 'SIDE CHAIN' 20 1 DG D 38 ? ? 0.094 'SIDE CHAIN' 21 1 DT D 41 ? ? 0.125 'SIDE CHAIN' 22 1 DT D 42 ? ? 0.130 'SIDE CHAIN' 23 1 DT D 44 ? ? 0.153 'SIDE CHAIN' # _refine_B_iso.class 'ALL ATOMS' _refine_B_iso.details TR _refine_B_iso.treatment isotropic _refine_B_iso.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_occupancy.class 'ALL ATOMS' _refine_occupancy.treatment fix _refine_occupancy.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DG OP3 O N N 1 DG P P N N 2 DG OP1 O N N 3 DG OP2 O N N 4 DG "O5'" O N N 5 DG "C5'" C N N 6 DG "C4'" C N R 7 DG "O4'" O N N 8 DG "C3'" C N S 9 DG "O3'" O N N 10 DG "C2'" C N N 11 DG "C1'" C N R 12 DG N9 N Y N 13 DG C8 C Y N 14 DG N7 N Y N 15 DG C5 C Y N 16 DG C6 C N N 17 DG O6 O N N 18 DG N1 N N N 19 DG C2 C N N 20 DG N2 N N N 21 DG N3 N N N 22 DG C4 C Y N 23 DG HOP3 H N N 24 DG HOP2 H N N 25 DG "H5'" H N N 26 DG "H5''" H N N 27 DG "H4'" H N N 28 DG "H3'" H N N 29 DG "HO3'" H N N 30 DG "H2'" H N N 31 DG "H2''" H N N 32 DG "H1'" H N N 33 DG H8 H N N 34 DG H1 H N N 35 DG H21 H N N 36 DG H22 H N N 37 DT OP3 O N N 38 DT P P N N 39 DT OP1 O N N 40 DT OP2 O N N 41 DT "O5'" O N N 42 DT "C5'" C N N 43 DT "C4'" C N R 44 DT "O4'" O N N 45 DT "C3'" C N S 46 DT "O3'" O N N 47 DT "C2'" C N N 48 DT "C1'" C N R 49 DT N1 N N N 50 DT C2 C N N 51 DT O2 O N N 52 DT N3 N N N 53 DT C4 C N N 54 DT O4 O N N 55 DT C5 C N N 56 DT C7 C N N 57 DT C6 C N N 58 DT HOP3 H N N 59 DT HOP2 H N N 60 DT "H5'" H N N 61 DT "H5''" H N N 62 DT "H4'" H N N 63 DT "H3'" H N N 64 DT "HO3'" H N N 65 DT "H2'" H N N 66 DT "H2''" H N N 67 DT "H1'" H N N 68 DT H3 H N N 69 DT H71 H N N 70 DT H72 H N N 71 DT H73 H N N 72 DT H6 H N N 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DG OP3 P sing N N 1 DG OP3 HOP3 sing N N 2 DG P OP1 doub N N 3 DG P OP2 sing N N 4 DG P "O5'" sing N N 5 DG OP2 HOP2 sing N N 6 DG "O5'" "C5'" sing N N 7 DG "C5'" "C4'" sing N N 8 DG "C5'" "H5'" sing N N 9 DG "C5'" "H5''" sing N N 10 DG "C4'" "O4'" sing N N 11 DG "C4'" "C3'" sing N N 12 DG "C4'" "H4'" sing N N 13 DG "O4'" "C1'" sing N N 14 DG "C3'" "O3'" sing N N 15 DG "C3'" "C2'" sing N N 16 DG "C3'" "H3'" sing N N 17 DG "O3'" "HO3'" sing N N 18 DG "C2'" "C1'" sing N N 19 DG "C2'" "H2'" sing N N 20 DG "C2'" "H2''" sing N N 21 DG "C1'" N9 sing N N 22 DG "C1'" "H1'" sing N N 23 DG N9 C8 sing Y N 24 DG N9 C4 sing Y N 25 DG C8 N7 doub Y N 26 DG C8 H8 sing N N 27 DG N7 C5 sing Y N 28 DG C5 C6 sing N N 29 DG C5 C4 doub Y N 30 DG C6 O6 doub N N 31 DG C6 N1 sing N N 32 DG N1 C2 sing N N 33 DG N1 H1 sing N N 34 DG C2 N2 sing N N 35 DG C2 N3 doub N N 36 DG N2 H21 sing N N 37 DG N2 H22 sing N N 38 DG N3 C4 sing N N 39 DT OP3 P sing N N 40 DT OP3 HOP3 sing N N 41 DT P OP1 doub N N 42 DT P OP2 sing N N 43 DT P "O5'" sing N N 44 DT OP2 HOP2 sing N N 45 DT "O5'" "C5'" sing N N 46 DT "C5'" "C4'" sing N N 47 DT "C5'" "H5'" sing N N 48 DT "C5'" "H5''" sing N N 49 DT "C4'" "O4'" sing N N 50 DT "C4'" "C3'" sing N N 51 DT "C4'" "H4'" sing N N 52 DT "O4'" "C1'" sing N N 53 DT "C3'" "O3'" sing N N 54 DT "C3'" "C2'" sing N N 55 DT "C3'" "H3'" sing N N 56 DT "O3'" "HO3'" sing N N 57 DT "C2'" "C1'" sing N N 58 DT "C2'" "H2'" sing N N 59 DT "C2'" "H2''" sing N N 60 DT "C1'" N1 sing N N 61 DT "C1'" "H1'" sing N N 62 DT N1 C2 sing N N 63 DT N1 C6 sing N N 64 DT C2 O2 doub N N 65 DT C2 N3 sing N N 66 DT N3 C4 sing N N 67 DT N3 H3 sing N N 68 DT C4 O4 doub N N 69 DT C4 C5 sing N N 70 DT C5 C7 sing N N 71 DT C5 C6 doub N N 72 DT C7 H71 sing N N 73 DT C7 H72 sing N N 74 DT C7 H73 sing N N 75 DT C6 H6 sing N N 76 # _ndb_struct_conf_na.entry_id 1D59 _ndb_struct_conf_na.feature 'quadruple helix' # _atom_sites.entry_id 1D59 _atom_sites.fract_transf_matrix[1][1] 0.036062 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020173 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010281 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_