data_1D6X # _entry.id 1D6X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D6X pdb_00001d6x 10.2210/pdb1d6x/pdb RCSB RCSB009849 ? ? WWPDB D_1000009849 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-01-03 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D6X _pdbx_database_status.recvd_initial_deposition_date 1999-10-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schibli, D.J.' 1 'Hwang, P.M.' 2 'Vogel, H.J.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structure of the antimicrobial peptide tritrpticin bound to micelles: a distinct membrane-bound peptide fold.' Biochemistry 38 16749 16755 1999 BICHAW US 0006-2960 0033 ? 10606506 10.1021/bi990701c 1 ;Antimicrobial Activity of a 13 Amino Acid Tryptophan-Rich Peptide Derived From a Putative Porcine Precursor Protein of a Novel Family of Antibacterial Peptides ; 'FEBS Lett.' 390 95 98 1996 FEBLAL NE 0014-5793 0165 ? ? '10.1016/0014-5793(96)00637-0' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schibli, D.J.' 1 ? primary 'Hwang, P.M.' 2 ? primary 'Vogel, H.J.' 3 ? 1 'Lawyer, C.' 4 ? 1 'Pai, S.' 5 ? 1 'Watabe, M.' 6 ? 1 'Borgia, P.' 7 ? 1 'Mashimo, T.' 8 ? 1 'Eagleton, L.' 9 ? 1 'Watabe, K.' 10 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'ANTIMICROBIAL PEPTIDE, TRITRPTICIN' _entity.formula_weight 1906.286 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'SYNTHETIC CATHELICIDIN FRAGMENT' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code VRRFPWWWPFLRR _entity_poly.pdbx_seq_one_letter_code_can VRRFPWWWPFLRR _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 ARG n 1 3 ARG n 1 4 PHE n 1 5 PRO n 1 6 TRP n 1 7 TRP n 1 8 TRP n 1 9 PRO n 1 10 PHE n 1 11 LEU n 1 12 ARG n 1 13 ARG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'SYNTHETIC PEPTIDE, SEQUENCE FROM A FRAGMENT OF A PORCINE NEUTROPHIL CATHELICIDIN' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 1 VAL VAL A . n A 1 2 ARG 2 2 2 ARG ARG A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 TRP 7 7 7 TRP TRP A . n A 1 8 TRP 8 8 8 TRP TRP A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 ARG 13 13 13 ARG ARG A . n # _cell.entry_id 1D6X _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D6X _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1D6X _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1D6X _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D6X _struct.title 'THE STRUCTURE OF THE ANTIMICROBIAL PEPTIDE TRITRPTICIN BOUND TO MICELLES-A DISTINCT MEMBRANE-BOUND PEPTIDE FOLD' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 1D6X _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'TYPE IV TURN-TYPE III TURN, IMMUNE SYSTEM' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1D6X _struct_ref.pdbx_db_accession 1D6X _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1D6X _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 13 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1D6X _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 13 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 13 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id TRP _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 7 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LEU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 11 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id TRP _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 7 _struct_conf.end_auth_comp_id LEU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 11 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 O A PRO 5 ? ? H A TRP 8 ? ? 1.44 2 2 O A TRP 8 ? ? H A LEU 11 ? ? 1.55 3 5 O A TRP 8 ? ? H A LEU 11 ? ? 1.56 4 6 O A TRP 8 ? ? H A LEU 11 ? ? 1.59 5 10 O A TRP 8 ? ? H A LEU 11 ? ? 1.54 6 15 O A TRP 8 ? ? H A LEU 11 ? ? 1.54 7 18 O A TRP 8 ? ? H A LEU 11 ? ? 1.54 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 3 ? ? -175.07 -38.18 2 1 PHE A 4 ? ? -34.73 96.81 3 1 PRO A 5 ? ? -66.58 -148.31 4 1 PRO A 9 ? ? -34.83 -33.50 5 1 ARG A 12 ? ? -175.16 -69.61 6 2 PHE A 4 ? ? -34.50 92.66 7 2 TRP A 6 ? ? -34.85 -29.24 8 2 PRO A 9 ? ? -39.91 -38.49 9 2 LEU A 11 ? ? -52.52 -179.32 10 3 PHE A 4 ? ? -35.53 96.89 11 3 PRO A 5 ? ? -67.51 -149.44 12 3 PRO A 9 ? ? -35.00 -31.93 13 4 PHE A 4 ? ? -34.83 95.87 14 4 PRO A 5 ? ? -68.69 -147.83 15 4 PRO A 9 ? ? -36.59 -31.73 16 5 ARG A 3 ? ? -175.15 -46.09 17 5 PRO A 5 ? ? -70.54 -143.18 18 5 PRO A 9 ? ? -34.13 -33.37 19 5 ARG A 12 ? ? -140.97 -67.49 20 6 PHE A 4 ? ? -34.93 95.14 21 6 PRO A 5 ? ? -69.80 -147.33 22 6 LEU A 11 ? ? -52.75 -178.68 23 7 ARG A 3 ? ? -96.35 39.07 24 7 PHE A 4 ? ? -35.03 95.62 25 7 PRO A 5 ? ? -67.88 -150.83 26 7 PRO A 9 ? ? -34.85 -32.28 27 7 ARG A 12 ? ? -161.16 35.06 28 8 PHE A 4 ? ? -34.90 95.90 29 8 PRO A 5 ? ? -68.72 -149.19 30 8 PRO A 9 ? ? -33.86 -32.64 31 8 ARG A 12 ? ? -129.54 -61.54 32 9 PHE A 4 ? ? -35.71 96.33 33 9 PRO A 5 ? ? -68.92 -147.71 34 9 PRO A 9 ? ? -34.05 -31.07 35 10 ARG A 3 ? ? -108.41 59.65 36 10 PHE A 4 ? ? -34.76 95.14 37 10 PRO A 5 ? ? -69.58 -147.77 38 10 LEU A 11 ? ? -48.45 -78.64 39 10 ARG A 12 ? ? -59.22 -76.66 40 11 ARG A 3 ? ? -96.98 42.46 41 11 PHE A 4 ? ? -34.94 95.82 42 11 PRO A 5 ? ? -67.50 -150.06 43 11 PRO A 9 ? ? -34.79 -32.22 44 12 PHE A 4 ? ? -34.73 95.22 45 12 PRO A 5 ? ? -69.06 -149.83 46 12 PRO A 9 ? ? -34.73 -32.47 47 12 ARG A 12 ? ? -175.05 124.16 48 13 ARG A 2 ? ? -60.00 -176.30 49 13 ARG A 3 ? ? -153.20 30.51 50 13 PHE A 4 ? ? -34.93 95.73 51 13 PRO A 5 ? ? -69.15 -148.20 52 13 PRO A 9 ? ? -34.80 -33.13 53 13 ARG A 12 ? ? -175.14 145.29 54 14 PHE A 4 ? ? -34.81 95.65 55 14 PRO A 5 ? ? -68.05 -149.50 56 14 PRO A 9 ? ? -35.00 -33.88 57 14 ARG A 12 ? ? -152.90 -47.00 58 15 ARG A 3 ? ? -68.98 70.41 59 15 PHE A 4 ? ? -34.87 95.62 60 15 PRO A 5 ? ? -69.62 -146.22 61 15 PRO A 9 ? ? -34.41 -32.38 62 16 ARG A 2 ? ? -59.06 170.19 63 16 PHE A 4 ? ? -34.88 96.19 64 16 PRO A 5 ? ? -69.70 -147.51 65 16 PRO A 9 ? ? -34.54 -33.61 66 17 ARG A 3 ? ? -175.06 -37.02 67 17 PHE A 4 ? ? -34.91 96.61 68 17 PRO A 5 ? ? -66.76 -149.91 69 17 PRO A 9 ? ? -35.84 -31.59 70 17 LEU A 11 ? ? -87.94 38.31 71 18 PHE A 4 ? ? -35.44 96.15 72 18 PRO A 5 ? ? -69.31 -147.28 73 18 PRO A 9 ? ? -34.54 -32.21 74 19 ARG A 2 ? ? -59.69 -168.82 75 19 ARG A 3 ? ? -154.52 29.84 76 19 PHE A 4 ? ? -38.65 98.70 77 19 PRO A 5 ? ? -63.64 -87.34 78 19 TRP A 6 ? ? -175.33 -35.55 79 19 PRO A 9 ? ? -35.05 -33.63 # _pdbx_nmr_ensemble.entry_id 1D6X _pdbx_nmr_ensemble.conformers_calculated_total_number 97 _pdbx_nmr_ensemble.conformers_submitted_total_number 19 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with favorable non-bond energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1D6X _pdbx_nmr_representative.conformer_id 19 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '3 MM TRITRPTICIN, 400 MM PERDEUTERATED SDS' ? 2 '3 MM TRITRPTICIN, 400 MM PERDEUTERATED SDS' ? # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 313 _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH 4.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength '400 mM SDS' _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 1 2 1 DQF-COSY 1 3 1 TOCSY 1 4 1 '2D NOESY' 2 5 1 TOCSY 2 # _pdbx_nmr_details.entry_id 1D6X _pdbx_nmr_details.text 'THIS STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR TECHNIQUES' # _pdbx_nmr_refine.entry_id 1D6X _pdbx_nmr_refine.method 'RESTRAINED SIMULATED ANNEALING MOLECULAR DYNAMICS' _pdbx_nmr_refine.details 'THE STRUCTURES ARE BASED ON 163 INTERPROTON RESTRAINTS. OF THESE 47 WERE INTRARESIDUE, 50 SEQUENTIAL, AND 66 SHORT-RANGE' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal processing NMRPipe 5.0 'DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER, BAX' 1 refinement CNS 0.9 'BRUNGER, ADAMS, CLORE, DELANO, GROS, GROSSE-KUNSTLEVE, JIANG, KUSZEWSKI, NILGES, PANNU, READ, RICE, SIMONSON, WARREN' 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 LEU N N N N 28 LEU CA C N S 29 LEU C C N N 30 LEU O O N N 31 LEU CB C N N 32 LEU CG C N N 33 LEU CD1 C N N 34 LEU CD2 C N N 35 LEU OXT O N N 36 LEU H H N N 37 LEU H2 H N N 38 LEU HA H N N 39 LEU HB2 H N N 40 LEU HB3 H N N 41 LEU HG H N N 42 LEU HD11 H N N 43 LEU HD12 H N N 44 LEU HD13 H N N 45 LEU HD21 H N N 46 LEU HD22 H N N 47 LEU HD23 H N N 48 LEU HXT H N N 49 PHE N N N N 50 PHE CA C N S 51 PHE C C N N 52 PHE O O N N 53 PHE CB C N N 54 PHE CG C Y N 55 PHE CD1 C Y N 56 PHE CD2 C Y N 57 PHE CE1 C Y N 58 PHE CE2 C Y N 59 PHE CZ C Y N 60 PHE OXT O N N 61 PHE H H N N 62 PHE H2 H N N 63 PHE HA H N N 64 PHE HB2 H N N 65 PHE HB3 H N N 66 PHE HD1 H N N 67 PHE HD2 H N N 68 PHE HE1 H N N 69 PHE HE2 H N N 70 PHE HZ H N N 71 PHE HXT H N N 72 PRO N N N N 73 PRO CA C N S 74 PRO C C N N 75 PRO O O N N 76 PRO CB C N N 77 PRO CG C N N 78 PRO CD C N N 79 PRO OXT O N N 80 PRO H H N N 81 PRO HA H N N 82 PRO HB2 H N N 83 PRO HB3 H N N 84 PRO HG2 H N N 85 PRO HG3 H N N 86 PRO HD2 H N N 87 PRO HD3 H N N 88 PRO HXT H N N 89 TRP N N N N 90 TRP CA C N S 91 TRP C C N N 92 TRP O O N N 93 TRP CB C N N 94 TRP CG C Y N 95 TRP CD1 C Y N 96 TRP CD2 C Y N 97 TRP NE1 N Y N 98 TRP CE2 C Y N 99 TRP CE3 C Y N 100 TRP CZ2 C Y N 101 TRP CZ3 C Y N 102 TRP CH2 C Y N 103 TRP OXT O N N 104 TRP H H N N 105 TRP H2 H N N 106 TRP HA H N N 107 TRP HB2 H N N 108 TRP HB3 H N N 109 TRP HD1 H N N 110 TRP HE1 H N N 111 TRP HE3 H N N 112 TRP HZ2 H N N 113 TRP HZ3 H N N 114 TRP HH2 H N N 115 TRP HXT H N N 116 VAL N N N N 117 VAL CA C N S 118 VAL C C N N 119 VAL O O N N 120 VAL CB C N N 121 VAL CG1 C N N 122 VAL CG2 C N N 123 VAL OXT O N N 124 VAL H H N N 125 VAL H2 H N N 126 VAL HA H N N 127 VAL HB H N N 128 VAL HG11 H N N 129 VAL HG12 H N N 130 VAL HG13 H N N 131 VAL HG21 H N N 132 VAL HG22 H N N 133 VAL HG23 H N N 134 VAL HXT H N N 135 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 LEU N CA sing N N 27 LEU N H sing N N 28 LEU N H2 sing N N 29 LEU CA C sing N N 30 LEU CA CB sing N N 31 LEU CA HA sing N N 32 LEU C O doub N N 33 LEU C OXT sing N N 34 LEU CB CG sing N N 35 LEU CB HB2 sing N N 36 LEU CB HB3 sing N N 37 LEU CG CD1 sing N N 38 LEU CG CD2 sing N N 39 LEU CG HG sing N N 40 LEU CD1 HD11 sing N N 41 LEU CD1 HD12 sing N N 42 LEU CD1 HD13 sing N N 43 LEU CD2 HD21 sing N N 44 LEU CD2 HD22 sing N N 45 LEU CD2 HD23 sing N N 46 LEU OXT HXT sing N N 47 PHE N CA sing N N 48 PHE N H sing N N 49 PHE N H2 sing N N 50 PHE CA C sing N N 51 PHE CA CB sing N N 52 PHE CA HA sing N N 53 PHE C O doub N N 54 PHE C OXT sing N N 55 PHE CB CG sing N N 56 PHE CB HB2 sing N N 57 PHE CB HB3 sing N N 58 PHE CG CD1 doub Y N 59 PHE CG CD2 sing Y N 60 PHE CD1 CE1 sing Y N 61 PHE CD1 HD1 sing N N 62 PHE CD2 CE2 doub Y N 63 PHE CD2 HD2 sing N N 64 PHE CE1 CZ doub Y N 65 PHE CE1 HE1 sing N N 66 PHE CE2 CZ sing Y N 67 PHE CE2 HE2 sing N N 68 PHE CZ HZ sing N N 69 PHE OXT HXT sing N N 70 PRO N CA sing N N 71 PRO N CD sing N N 72 PRO N H sing N N 73 PRO CA C sing N N 74 PRO CA CB sing N N 75 PRO CA HA sing N N 76 PRO C O doub N N 77 PRO C OXT sing N N 78 PRO CB CG sing N N 79 PRO CB HB2 sing N N 80 PRO CB HB3 sing N N 81 PRO CG CD sing N N 82 PRO CG HG2 sing N N 83 PRO CG HG3 sing N N 84 PRO CD HD2 sing N N 85 PRO CD HD3 sing N N 86 PRO OXT HXT sing N N 87 TRP N CA sing N N 88 TRP N H sing N N 89 TRP N H2 sing N N 90 TRP CA C sing N N 91 TRP CA CB sing N N 92 TRP CA HA sing N N 93 TRP C O doub N N 94 TRP C OXT sing N N 95 TRP CB CG sing N N 96 TRP CB HB2 sing N N 97 TRP CB HB3 sing N N 98 TRP CG CD1 doub Y N 99 TRP CG CD2 sing Y N 100 TRP CD1 NE1 sing Y N 101 TRP CD1 HD1 sing N N 102 TRP CD2 CE2 doub Y N 103 TRP CD2 CE3 sing Y N 104 TRP NE1 CE2 sing Y N 105 TRP NE1 HE1 sing N N 106 TRP CE2 CZ2 sing Y N 107 TRP CE3 CZ3 doub Y N 108 TRP CE3 HE3 sing N N 109 TRP CZ2 CH2 doub Y N 110 TRP CZ2 HZ2 sing N N 111 TRP CZ3 CH2 sing Y N 112 TRP CZ3 HZ3 sing N N 113 TRP CH2 HH2 sing N N 114 TRP OXT HXT sing N N 115 VAL N CA sing N N 116 VAL N H sing N N 117 VAL N H2 sing N N 118 VAL CA C sing N N 119 VAL CA CB sing N N 120 VAL CA HA sing N N 121 VAL C O doub N N 122 VAL C OXT sing N N 123 VAL CB CG1 sing N N 124 VAL CB CG2 sing N N 125 VAL CB HB sing N N 126 VAL CG1 HG11 sing N N 127 VAL CG1 HG12 sing N N 128 VAL CG1 HG13 sing N N 129 VAL CG2 HG21 sing N N 130 VAL CG2 HG22 sing N N 131 VAL CG2 HG23 sing N N 132 VAL OXT HXT sing N N 133 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AMX _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.type ? # _atom_sites.entry_id 1D6X _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_