data_1D85 # _entry.id 1D85 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D85 pdb_00001d85 10.2210/pdb1d85/pdb RCSB GDLB17 ? ? WWPDB D_1000172682 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1993-07-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D85 _pdbx_database_status.recvd_initial_deposition_date 1992-08-24 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sriram, M.' 1 'Van Der Marel, G.A.' 2 'Roelen, H.L.P.F.' 3 'Van Boom, J.H.' 4 'Wang, A.H.-J.' 5 # _citation.id primary _citation.title ;Structural consequences of a carcinogenic alkylation lesion on DNA: effect of O6-ethylguanine on the molecular structure of the d(CGC[e6G]AATTCGCG)-netropsin complex. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 31 _citation.page_first 11823 _citation.page_last 11834 _citation.year 1992 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 1332773 _citation.pdbx_database_id_DOI 10.1021/bi00162a022 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sriram, M.' 1 ? primary 'van der Marel, G.A.' 2 ? primary 'Roelen, H.L.' 3 ? primary 'van Boom, J.H.' 4 ? primary 'Wang, A.H.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*(G36)P*AP*AP*TP*TP*CP*GP*CP*G)-3') ; 3691.445 2 ? ? ? ? 2 non-polymer syn NETROPSIN 430.464 1 ? ? ? ? 3 water nat water 18.015 89 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(G36)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 NETROPSIN NT 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 G36 n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G36 'DNA linking' n "O6-ETHYL-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C12 H18 N5 O7 P' 375.274 HOH non-polymer . WATER ? 'H2 O' 18.015 NT non-polymer . NETROPSIN ? 'C18 H26 N10 O3' 430.464 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 G36 4 4 4 G36 +G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 G36 4 16 16 G36 +G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NT 1 25 25 NT NT B . D 3 HOH 1 28 28 HOH HOH A . D 3 HOH 2 29 29 HOH HOH A . D 3 HOH 3 35 35 HOH HOH A . D 3 HOH 4 39 39 HOH HOH A . D 3 HOH 5 40 40 HOH HOH A . D 3 HOH 6 41 41 HOH HOH A . D 3 HOH 7 47 47 HOH HOH A . D 3 HOH 8 48 48 HOH HOH A . D 3 HOH 9 49 49 HOH HOH A . D 3 HOH 10 54 54 HOH HOH A . D 3 HOH 11 57 57 HOH HOH A . D 3 HOH 12 58 58 HOH HOH A . D 3 HOH 13 60 60 HOH HOH A . D 3 HOH 14 62 62 HOH HOH A . D 3 HOH 15 63 63 HOH HOH A . D 3 HOH 16 64 64 HOH HOH A . D 3 HOH 17 68 68 HOH HOH A . D 3 HOH 18 69 69 HOH HOH A . D 3 HOH 19 71 71 HOH HOH A . D 3 HOH 20 75 75 HOH HOH A . D 3 HOH 21 79 79 HOH HOH A . D 3 HOH 22 80 80 HOH HOH A . D 3 HOH 23 81 81 HOH HOH A . D 3 HOH 24 84 84 HOH HOH A . D 3 HOH 25 88 88 HOH HOH A . D 3 HOH 26 93 93 HOH HOH A . D 3 HOH 27 94 94 HOH HOH A . D 3 HOH 28 98 98 HOH HOH A . D 3 HOH 29 99 99 HOH HOH A . D 3 HOH 30 100 100 HOH HOH A . D 3 HOH 31 105 105 HOH HOH A . D 3 HOH 32 107 107 HOH HOH A . D 3 HOH 33 109 109 HOH HOH A . D 3 HOH 34 110 110 HOH HOH A . E 3 HOH 1 26 26 HOH HOH B . E 3 HOH 2 27 27 HOH HOH B . E 3 HOH 3 30 30 HOH HOH B . E 3 HOH 4 31 31 HOH HOH B . E 3 HOH 5 32 32 HOH HOH B . E 3 HOH 6 33 33 HOH HOH B . E 3 HOH 7 34 34 HOH HOH B . E 3 HOH 8 36 36 HOH HOH B . E 3 HOH 9 37 37 HOH HOH B . E 3 HOH 10 38 38 HOH HOH B . E 3 HOH 11 42 42 HOH HOH B . E 3 HOH 12 43 43 HOH HOH B . E 3 HOH 13 44 44 HOH HOH B . E 3 HOH 14 45 45 HOH HOH B . E 3 HOH 15 46 46 HOH HOH B . E 3 HOH 16 50 50 HOH HOH B . E 3 HOH 17 51 51 HOH HOH B . E 3 HOH 18 52 52 HOH HOH B . E 3 HOH 19 53 53 HOH HOH B . E 3 HOH 20 55 55 HOH HOH B . E 3 HOH 21 56 56 HOH HOH B . E 3 HOH 22 59 59 HOH HOH B . E 3 HOH 23 61 61 HOH HOH B . E 3 HOH 24 65 65 HOH HOH B . E 3 HOH 25 66 66 HOH HOH B . E 3 HOH 26 67 67 HOH HOH B . E 3 HOH 27 70 70 HOH HOH B . E 3 HOH 28 72 72 HOH HOH B . E 3 HOH 29 73 73 HOH HOH B . E 3 HOH 30 74 74 HOH HOH B . E 3 HOH 31 76 76 HOH HOH B . E 3 HOH 32 77 77 HOH HOH B . E 3 HOH 33 78 78 HOH HOH B . E 3 HOH 34 82 82 HOH HOH B . E 3 HOH 35 83 83 HOH HOH B . E 3 HOH 36 85 85 HOH HOH B . E 3 HOH 37 86 86 HOH HOH B . E 3 HOH 38 87 87 HOH HOH B . E 3 HOH 39 89 89 HOH HOH B . E 3 HOH 40 90 90 HOH HOH B . E 3 HOH 41 91 91 HOH HOH B . E 3 HOH 42 92 92 HOH HOH B . E 3 HOH 43 95 95 HOH HOH B . E 3 HOH 44 96 96 HOH HOH B . E 3 HOH 45 97 97 HOH HOH B . E 3 HOH 46 101 101 HOH HOH B . E 3 HOH 47 102 102 HOH HOH B . E 3 HOH 48 103 103 HOH HOH B . E 3 HOH 49 104 104 HOH HOH B . E 3 HOH 50 106 106 HOH HOH B . E 3 HOH 51 108 108 HOH HOH B . E 3 HOH 52 111 111 HOH HOH B . E 3 HOH 53 112 112 HOH HOH B . E 3 HOH 54 113 113 HOH HOH B . E 3 HOH 55 114 114 HOH HOH B . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1D85 _cell.length_a 25.456 _cell.length_b 41.126 _cell.length_c 67.081 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D85 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1D85 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.38 _exptl_crystal.density_percent_sol 48.28 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 MGCL2 ? ? ? 1 5 1 SPERMINE ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details 'ROOM TEMPERATURE' _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'RIGAKU AFC-5R' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1D85 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.000 _reflns.number_obs ? _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1D85 _refine.ls_number_reflns_obs 1514 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 2.500 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.156 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 89 _refine_hist.number_atoms_total 610 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d 0.019 ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1D85 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D85 _struct.title ;STRUCTURAL CONSEQUENCES OF A CARCINOGENIC ALKYLATION LESION ON DNA: EFFECT OF O6-ETHYL-GUANINE ON THE MOLECULAR STRUCTURE OF D(CGC[E6G]AATTCGCG)-NETROPSIN COMPLEX ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D85 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1D85 _struct_ref.pdbx_db_accession 1D85 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1D85 A 1 ? 12 ? 1D85 1 ? 12 ? 1 12 2 1 1D85 B 1 ? 12 ? 1D85 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 3 "O3'" ? ? ? 1_555 A G36 4 P ? ? A DC 3 A G36 4 1_555 ? ? ? ? ? ? ? 1.649 ? ? covale2 covale one ? A G36 4 "O3'" ? ? ? 1_555 A DA 5 P ? ? A G36 4 A DA 5 1_555 ? ? ? ? ? ? ? 1.569 ? ? covale3 covale both ? B DC 3 "O3'" ? ? ? 1_555 B G36 4 P ? ? B DC 15 B G36 16 1_555 ? ? ? ? ? ? ? 1.699 ? ? covale4 covale one ? B G36 4 "O3'" ? ? ? 1_555 B DA 5 P ? ? B G36 16 B DA 17 1_555 ? ? ? ? ? ? ? 1.647 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G36 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A G36 4 B DC 21 1_555 ? ? ? ? ? ? 'G36-DC PAIR' ? ? ? hydrog11 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 5 B DT 19 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B G36 4 N2 ? ? A DC 9 B G36 16 1_555 ? ? ? ? ? ? 'DC-G36 PAIR' ? ? ? hydrog21 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B NT 25 ? 9 'BINDING SITE FOR RESIDUE NT B 25' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DA A 6 ? DA A 6 . ? 1_555 ? 2 AC1 9 DT A 7 ? DT A 7 . ? 1_555 ? 3 AC1 9 DC A 9 ? DC A 9 . ? 1_555 ? 4 AC1 9 DG A 12 ? DG A 12 . ? 2_665 ? 5 AC1 9 DT B 7 ? DT B 19 . ? 1_555 ? 6 AC1 9 DT B 8 ? DT B 20 . ? 1_555 ? 7 AC1 9 DC B 9 ? DC B 21 . ? 1_555 ? 8 AC1 9 DG B 10 ? DG B 22 . ? 1_555 ? 9 AC1 9 HOH E . ? HOH B 86 . ? 1_555 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OP2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 DG _pdbx_validate_symm_contact.auth_seq_id_1 12 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 77 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_565 _pdbx_validate_symm_contact.dist 1.89 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? 1.490 1.420 0.070 0.011 N 2 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? 1.520 1.420 0.100 0.011 N 3 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? 1.490 1.420 0.070 0.011 N 4 1 "O3'" B DC 15 ? ? P B G36 16 ? ? 1.699 1.607 0.092 0.012 Y 5 1 "O3'" B DA 17 ? ? P B DA 18 ? ? 1.683 1.607 0.076 0.012 Y 6 1 P B DT 20 ? ? "O5'" B DT 20 ? ? 1.675 1.593 0.082 0.010 N 7 1 C6 B DT 20 ? ? N1 B DT 20 ? ? 1.325 1.378 -0.053 0.007 N 8 1 P B DC 23 ? ? "O5'" B DC 23 ? ? 1.681 1.593 0.088 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DC 1 ? ? "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 103.74 109.40 -5.66 0.80 N 2 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 124.45 118.90 5.55 0.60 N 3 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.40 121.90 -4.50 0.70 N 4 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 101.20 104.50 -3.30 0.40 N 5 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 113.47 108.30 5.17 0.30 N 6 1 C6 A DG 2 ? ? N1 A DG 2 ? ? C2 A DG 2 ? ? 120.53 125.10 -4.57 0.60 N 7 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 115.57 111.50 4.07 0.50 N 8 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 116.32 108.30 8.02 0.30 N 9 1 "O5'" A DA 5 ? ? "C5'" A DA 5 ? ? "C4'" A DA 5 ? ? 103.27 109.40 -6.13 0.80 N 10 1 "C3'" A DA 5 ? ? "C2'" A DA 5 ? ? "C1'" A DA 5 ? ? 97.57 102.40 -4.83 0.80 N 11 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? "C2'" A DA 5 ? ? 100.58 105.90 -5.32 0.80 N 12 1 C6 A DA 5 ? ? N1 A DA 5 ? ? C2 A DA 5 ? ? 124.11 118.60 5.51 0.60 N 13 1 N1 A DA 5 ? ? C2 A DA 5 ? ? N3 A DA 5 ? ? 125.30 129.30 -4.00 0.50 N 14 1 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 113.87 117.70 -3.83 0.50 N 15 1 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 122.99 118.60 4.39 0.60 N 16 1 OP1 A DA 6 ? ? P A DA 6 ? ? OP2 A DA 6 ? ? 104.60 119.60 -15.00 1.50 N 17 1 "O5'" A DA 6 ? ? P A DA 6 ? ? OP2 A DA 6 ? ? 118.54 110.70 7.84 1.20 N 18 1 "O5'" A DA 6 ? ? "C5'" A DA 6 ? ? "C4'" A DA 6 ? ? 103.70 109.40 -5.70 0.80 N 19 1 "C1'" A DA 6 ? ? "O4'" A DA 6 ? ? "C4'" A DA 6 ? ? 102.91 110.10 -7.19 1.00 N 20 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? "C2'" A DA 6 ? ? 98.83 105.90 -7.07 0.80 N 21 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 111.26 108.30 2.96 0.30 N 22 1 "O5'" A DT 7 ? ? "C5'" A DT 7 ? ? "C4'" A DT 7 ? ? 101.50 109.40 -7.90 0.80 N 23 1 "C3'" A DT 7 ? ? "C2'" A DT 7 ? ? "C1'" A DT 7 ? ? 96.66 102.40 -5.74 0.80 N 24 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 115.70 108.30 7.40 0.30 N 25 1 N1 A DT 7 ? ? C2 A DT 7 ? ? N3 A DT 7 ? ? 119.78 114.60 5.18 0.60 N 26 1 C2 A DT 7 ? ? N3 A DT 7 ? ? C4 A DT 7 ? ? 121.66 127.20 -5.54 0.60 N 27 1 OP1 A DT 8 ? ? P A DT 8 ? ? OP2 A DT 8 ? ? 108.20 119.60 -11.40 1.50 N 28 1 "O5'" A DT 8 ? ? P A DT 8 ? ? OP2 A DT 8 ? ? 119.88 110.70 9.18 1.20 N 29 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.92 108.30 3.62 0.30 N 30 1 N1 A DT 8 ? ? C2 A DT 8 ? ? N3 A DT 8 ? ? 118.65 114.60 4.05 0.60 N 31 1 C2 A DT 8 ? ? N3 A DT 8 ? ? C4 A DT 8 ? ? 121.66 127.20 -5.54 0.60 N 32 1 N3 A DT 8 ? ? C4 A DT 8 ? ? C5 A DT 8 ? ? 119.13 115.20 3.93 0.60 N 33 1 N1 A DT 8 ? ? C2 A DT 8 ? ? O2 A DT 8 ? ? 118.04 123.10 -5.06 0.80 N 34 1 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DC 9 ? ? 133.34 119.70 13.64 1.20 Y 35 1 OP1 A DC 9 ? ? P A DC 9 ? ? OP2 A DC 9 ? ? 107.54 119.60 -12.06 1.50 N 36 1 "C5'" A DC 9 ? ? "C4'" A DC 9 ? ? "O4'" A DC 9 ? ? 116.43 109.80 6.63 1.10 N 37 1 "C4'" A DC 9 ? ? "C3'" A DC 9 ? ? "C2'" A DC 9 ? ? 93.35 102.20 -8.85 0.70 N 38 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.62 108.30 2.32 0.30 N 39 1 "C3'" A DC 9 ? ? "O3'" A DC 9 ? ? P A DG 10 ? ? 130.93 119.70 11.23 1.20 Y 40 1 "O5'" A DG 10 ? ? P A DG 10 ? ? OP2 A DG 10 ? ? 119.62 110.70 8.92 1.20 N 41 1 "O5'" A DG 10 ? ? "C5'" A DG 10 ? ? "C4'" A DG 10 ? ? 103.07 109.40 -6.33 0.80 N 42 1 "C1'" A DG 10 ? ? "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? 101.60 110.10 -8.50 1.00 N 43 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? "C2'" A DG 10 ? ? 98.92 105.90 -6.98 0.80 N 44 1 C5 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 123.50 128.60 -5.10 0.60 N 45 1 OP1 A DC 11 ? ? P A DC 11 ? ? OP2 A DC 11 ? ? 108.31 119.60 -11.29 1.50 N 46 1 "O5'" A DC 11 ? ? P A DC 11 ? ? OP2 A DC 11 ? ? 118.66 110.70 7.96 1.20 N 47 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 118.73 108.30 10.43 0.30 N 48 1 "C3'" A DC 11 ? ? "O3'" A DC 11 ? ? P A DG 12 ? ? 132.91 119.70 13.21 1.20 Y 49 1 "O5'" A DG 12 ? ? P A DG 12 ? ? OP2 A DG 12 ? ? 118.35 110.70 7.65 1.20 N 50 1 P A DG 12 ? ? "O5'" A DG 12 ? ? "C5'" A DG 12 ? ? 130.85 120.90 9.95 1.60 N 51 1 "C1'" A DG 12 ? ? "O4'" A DG 12 ? ? "C4'" A DG 12 ? ? 100.16 110.10 -9.94 1.00 N 52 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 110.51 108.30 2.21 0.30 N 53 1 C6 A DG 12 ? ? N1 A DG 12 ? ? C2 A DG 12 ? ? 120.97 125.10 -4.13 0.60 N 54 1 C5 A DG 12 ? ? C6 A DG 12 ? ? N1 A DG 12 ? ? 115.24 111.50 3.74 0.50 N 55 1 "O4'" B DC 13 ? ? "C4'" B DC 13 ? ? "C3'" B DC 13 ? ? 101.05 104.50 -3.45 0.40 N 56 1 N1 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 124.11 118.90 5.21 0.60 N 57 1 "C3'" B DC 13 ? ? "O3'" B DC 13 ? ? P B DG 14 ? ? 128.47 119.70 8.77 1.20 Y 58 1 OP1 B DG 14 ? ? P B DG 14 ? ? OP2 B DG 14 ? ? 109.61 119.60 -9.99 1.50 N 59 1 "O5'" B DG 14 ? ? P B DG 14 ? ? OP2 B DG 14 ? ? 122.30 110.70 11.60 1.20 N 60 1 "O5'" B DG 14 ? ? "C5'" B DG 14 ? ? "C4'" B DG 14 ? ? 102.00 109.40 -7.40 0.80 N 61 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 112.55 108.30 4.25 0.30 N 62 1 C6 B DG 14 ? ? N1 B DG 14 ? ? C2 B DG 14 ? ? 120.19 125.10 -4.91 0.60 N 63 1 N1 B DG 14 ? ? C2 B DG 14 ? ? N3 B DG 14 ? ? 128.17 123.90 4.27 0.60 N 64 1 C5 B DG 14 ? ? C6 B DG 14 ? ? N1 B DG 14 ? ? 114.80 111.50 3.30 0.50 N 65 1 "O5'" B DC 15 ? ? P B DC 15 ? ? OP2 B DC 15 ? ? 118.44 110.70 7.74 1.20 N 66 1 "C1'" B DC 15 ? ? "O4'" B DC 15 ? ? "C4'" B DC 15 ? ? 103.75 110.10 -6.35 1.00 N 67 1 C2 B DC 15 ? ? N3 B DC 15 ? ? C4 B DC 15 ? ? 123.12 119.90 3.22 0.50 N 68 1 N3 B DC 15 ? ? C4 B DC 15 ? ? C5 B DC 15 ? ? 119.30 121.90 -2.60 0.40 N 69 1 N1 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 124.03 118.90 5.13 0.60 N 70 1 "C3'" B DC 15 ? ? "O3'" B DC 15 ? ? P B G36 16 ? ? 109.32 119.70 -10.38 1.20 Y 71 1 "O5'" B DA 17 ? ? "C5'" B DA 17 ? ? "C4'" B DA 17 ? ? 103.61 109.40 -5.79 0.80 N 72 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 110.51 108.30 2.21 0.30 N 73 1 C6 B DA 17 ? ? N1 B DA 17 ? ? C2 B DA 17 ? ? 123.26 118.60 4.66 0.60 N 74 1 N1 B DA 17 ? ? C2 B DA 17 ? ? N3 B DA 17 ? ? 124.12 129.30 -5.18 0.50 N 75 1 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DA 18 ? ? 108.35 119.70 -11.35 1.20 Y 76 1 "O5'" B DA 18 ? ? P B DA 18 ? ? OP1 B DA 18 ? ? 117.93 110.70 7.23 1.20 N 77 1 "O5'" B DA 18 ? ? "C5'" B DA 18 ? ? "C4'" B DA 18 ? ? 103.35 109.40 -6.05 0.80 N 78 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? "C2'" B DA 18 ? ? 98.45 105.90 -7.45 0.80 N 79 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 118.51 108.30 10.21 0.30 N 80 1 N1 B DA 18 ? ? C2 B DA 18 ? ? N3 B DA 18 ? ? 124.91 129.30 -4.39 0.50 N 81 1 C2 B DA 18 ? ? N3 B DA 18 ? ? C4 B DA 18 ? ? 113.66 110.60 3.06 0.50 N 82 1 C8 B DA 18 ? ? N9 B DA 18 ? ? C4 B DA 18 ? ? 103.06 105.80 -2.74 0.40 N 83 1 "C3'" B DA 18 ? ? "O3'" B DA 18 ? ? P B DT 19 ? ? 129.26 119.70 9.56 1.20 Y 84 1 OP1 B DT 19 ? ? P B DT 19 ? ? OP2 B DT 19 ? ? 108.83 119.60 -10.77 1.50 N 85 1 "O5'" B DT 19 ? ? "C5'" B DT 19 ? ? "C4'" B DT 19 ? ? 98.61 109.40 -10.79 0.80 N 86 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 112.76 108.30 4.46 0.30 N 87 1 C2 B DT 19 ? ? N3 B DT 19 ? ? C4 B DT 19 ? ? 122.88 127.20 -4.32 0.60 N 88 1 N3 B DT 19 ? ? C4 B DT 19 ? ? C5 B DT 19 ? ? 119.04 115.20 3.84 0.60 N 89 1 C6 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 126.84 122.90 3.94 0.60 N 90 1 C6 B DT 20 ? ? N1 B DT 20 ? ? "C1'" B DT 20 ? ? 130.44 120.40 10.04 1.50 N 91 1 "C3'" B DT 20 ? ? "O3'" B DT 20 ? ? P B DC 21 ? ? 132.98 119.70 13.28 1.20 Y 92 1 "O4'" B DC 21 ? ? "C4'" B DC 21 ? ? "C3'" B DC 21 ? ? 100.93 104.50 -3.57 0.40 N 93 1 "C5'" B DC 21 ? ? "C4'" B DC 21 ? ? "C3'" B DC 21 ? ? 123.12 115.70 7.42 1.20 N 94 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 114.31 108.30 6.01 0.30 N 95 1 N3 B DC 21 ? ? C4 B DC 21 ? ? C5 B DC 21 ? ? 118.03 121.90 -3.87 0.40 N 96 1 N1 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 123.57 118.90 4.67 0.60 N 97 1 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 116.52 121.90 -5.38 0.70 N 98 1 C5 B DC 21 ? ? C4 B DC 21 ? ? N4 B DC 21 ? ? 124.40 120.20 4.20 0.70 N 99 1 "C3'" B DC 21 ? ? "O3'" B DC 21 ? ? P B DG 22 ? ? 128.68 119.70 8.98 1.20 Y 100 1 "O5'" B DG 22 ? ? P B DG 22 ? ? OP2 B DG 22 ? ? 118.87 110.70 8.17 1.20 N 101 1 "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? 97.43 102.20 -4.77 0.70 N 102 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 110.73 108.30 2.43 0.30 N 103 1 N1 B DG 22 ? ? C6 B DG 22 ? ? O6 B DG 22 ? ? 115.08 119.90 -4.82 0.60 N 104 1 "O3'" B DG 22 ? ? P B DC 23 ? ? OP1 B DC 23 ? ? 117.95 110.50 7.45 1.10 Y 105 1 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 117.57 121.90 -4.33 0.70 N 106 1 OP1 B DG 24 ? ? P B DG 24 ? ? OP2 B DG 24 ? ? 110.60 119.60 -9.00 1.50 N 107 1 "O5'" B DG 24 ? ? P B DG 24 ? ? OP1 B DG 24 ? ? 119.64 110.70 8.94 1.20 N 108 1 C6 B DG 24 ? ? N1 B DG 24 ? ? C2 B DG 24 ? ? 121.25 125.10 -3.85 0.60 N 109 1 C5 B DG 24 ? ? C6 B DG 24 ? ? N1 B DG 24 ? ? 115.31 111.50 3.81 0.50 N 110 1 C5 B DG 24 ? ? C6 B DG 24 ? ? O6 B DG 24 ? ? 123.99 128.60 -4.61 0.60 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A G36 4 A G36 4 ? DG ? 2 B G36 4 B G36 16 ? DG ? # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MINOR GROOVE BINDER' # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 G36 P P N N 144 G36 O1P O N N 145 G36 O2P O N N 146 G36 O3P O N N 147 G36 "O5'" O N N 148 G36 "C5'" C N N 149 G36 "C4'" C N R 150 G36 "O4'" O N N 151 G36 "C3'" C N S 152 G36 "O3'" O N N 153 G36 "C2'" C N N 154 G36 CM2 C N N 155 G36 "C1'" C N R 156 G36 N9 N Y N 157 G36 C8 C Y N 158 G36 N7 N Y N 159 G36 C5 C Y N 160 G36 C6 C Y N 161 G36 O6 O N N 162 G36 N1 N Y N 163 G36 C2 C Y N 164 G36 N2 N N N 165 G36 C1M C N N 166 G36 N3 N Y N 167 G36 C4 C Y N 168 G36 H2P H N N 169 G36 H3P H N N 170 G36 "H5'1" H N N 171 G36 "H5'2" H N N 172 G36 "H4'" H N N 173 G36 "H3'" H N N 174 G36 HA H N N 175 G36 "H2'1" H N N 176 G36 "H2'2" H N N 177 G36 HM21 H N N 178 G36 HM22 H N N 179 G36 HM23 H N N 180 G36 "H1'" H N N 181 G36 H8 H N N 182 G36 H2N1 H N N 183 G36 H2N2 H N N 184 G36 H1M1 H N N 185 G36 H1M2 H N N 186 HOH O O N N 187 HOH H1 H N N 188 HOH H2 H N N 189 NT C1 C N N 190 NT N1 N N N 191 NT N2 N N N 192 NT N3 N N N 193 NT C2 C N N 194 NT C3 C N N 195 NT O1 O N N 196 NT N4 N N N 197 NT C4 C Y N 198 NT C5 C Y N 199 NT C6 C Y N 200 NT N5 N Y N 201 NT C8 C N N 202 NT C7 C Y N 203 NT C9 C N N 204 NT O2 O N N 205 NT N6 N N N 206 NT C10 C Y N 207 NT C11 C Y N 208 NT C12 C Y N 209 NT N7 N Y N 210 NT C14 C N N 211 NT C13 C Y N 212 NT C15 C N N 213 NT O3 O N N 214 NT N8 N N N 215 NT C16 C N N 216 NT C17 C N N 217 NT C18 C N N 218 NT N9 N N N 219 NT N10 N N N 220 NT HN1 H N N 221 NT HN21 H N N 222 NT HN22 H N N 223 NT HN3 H N N 224 NT H21 H N N 225 NT H22 H N N 226 NT HN4 H N N 227 NT H5 H N N 228 NT H81 H N N 229 NT H82 H N N 230 NT H83 H N N 231 NT H7 H N N 232 NT HN6 H N N 233 NT H11 H N N 234 NT H141 H N N 235 NT H142 H N N 236 NT H143 H N N 237 NT H13 H N N 238 NT HN8 H N N 239 NT H161 H N N 240 NT H162 H N N 241 NT H171 H N N 242 NT H172 H N N 243 NT HN9 H N N 244 NT HN01 H N N 245 NT HN02 H N N 246 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 G36 P O1P doub N N 150 G36 P O2P sing N N 151 G36 P O3P sing N N 152 G36 P "O5'" sing N N 153 G36 O2P H2P sing N N 154 G36 O3P H3P sing N N 155 G36 "O5'" "C5'" sing N N 156 G36 "C5'" "C4'" sing N N 157 G36 "C5'" "H5'1" sing N N 158 G36 "C5'" "H5'2" sing N N 159 G36 "C4'" "O4'" sing N N 160 G36 "C4'" "C3'" sing N N 161 G36 "C4'" "H4'" sing N N 162 G36 "O4'" "C1'" sing N N 163 G36 "C3'" "O3'" sing N N 164 G36 "C3'" "C2'" sing N N 165 G36 "C3'" "H3'" sing N N 166 G36 "O3'" HA sing N N 167 G36 "C2'" "C1'" sing N N 168 G36 "C2'" "H2'1" sing N N 169 G36 "C2'" "H2'2" sing N N 170 G36 CM2 C1M sing N N 171 G36 CM2 HM21 sing N N 172 G36 CM2 HM22 sing N N 173 G36 CM2 HM23 sing N N 174 G36 "C1'" N9 sing N N 175 G36 "C1'" "H1'" sing N N 176 G36 N9 C8 sing Y N 177 G36 N9 C4 sing Y N 178 G36 C8 N7 doub Y N 179 G36 C8 H8 sing N N 180 G36 N7 C5 sing Y N 181 G36 C5 C6 doub Y N 182 G36 C5 C4 sing Y N 183 G36 C6 O6 sing N N 184 G36 C6 N1 sing Y N 185 G36 O6 C1M sing N N 186 G36 N1 C2 doub Y N 187 G36 C2 N2 sing N N 188 G36 C2 N3 sing Y N 189 G36 N2 H2N1 sing N N 190 G36 N2 H2N2 sing N N 191 G36 C1M H1M1 sing N N 192 G36 C1M H1M2 sing N N 193 G36 N3 C4 doub Y N 194 HOH O H1 sing N N 195 HOH O H2 sing N N 196 NT C1 N1 doub N N 197 NT C1 N2 sing N N 198 NT C1 N3 sing N N 199 NT N1 HN1 sing N N 200 NT N2 HN21 sing N N 201 NT N2 HN22 sing N N 202 NT N3 C2 sing N N 203 NT N3 HN3 sing N N 204 NT C2 C3 sing N N 205 NT C2 H21 sing N N 206 NT C2 H22 sing N N 207 NT C3 O1 doub N N 208 NT C3 N4 sing N N 209 NT N4 C4 sing N N 210 NT N4 HN4 sing N N 211 NT C4 C5 sing Y N 212 NT C4 C7 doub Y N 213 NT C5 C6 doub Y N 214 NT C5 H5 sing N N 215 NT C6 N5 sing Y N 216 NT C6 C9 sing N N 217 NT N5 C8 sing N N 218 NT N5 C7 sing Y N 219 NT C8 H81 sing N N 220 NT C8 H82 sing N N 221 NT C8 H83 sing N N 222 NT C7 H7 sing N N 223 NT C9 O2 doub N N 224 NT C9 N6 sing N N 225 NT N6 C10 sing N N 226 NT N6 HN6 sing N N 227 NT C10 C11 sing Y N 228 NT C10 C13 doub Y N 229 NT C11 C12 doub Y N 230 NT C11 H11 sing N N 231 NT C12 N7 sing Y N 232 NT C12 C15 sing N N 233 NT N7 C14 sing N N 234 NT N7 C13 sing Y N 235 NT C14 H141 sing N N 236 NT C14 H142 sing N N 237 NT C14 H143 sing N N 238 NT C13 H13 sing N N 239 NT C15 O3 doub N N 240 NT C15 N8 sing N N 241 NT N8 C16 sing N N 242 NT N8 HN8 sing N N 243 NT C16 C17 sing N N 244 NT C16 H161 sing N N 245 NT C16 H162 sing N N 246 NT C17 C18 sing N N 247 NT C17 H171 sing N N 248 NT C17 H172 sing N N 249 NT C18 N9 doub N N 250 NT C18 N10 sing N N 251 NT N9 HN9 sing N N 252 NT N10 HN01 sing N N 253 NT N10 HN02 sing N N 254 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1D85 'double helix' 1D85 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.068 -0.097 -0.059 17.676 3.734 -5.163 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 0.252 -0.017 -0.082 4.283 -8.557 -2.530 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 -0.323 -0.128 0.035 -2.222 -4.893 0.282 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A G36 4 1_555 B DC 9 1_555 1.234 0.359 0.225 18.801 -5.156 10.748 4 A_G364:DC21_B A 4 ? B 21 ? ? 1 1 A DA 5 1_555 B DT 8 1_555 -0.390 -0.291 0.275 -2.958 -5.112 5.899 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 -0.254 -0.156 0.545 14.470 -17.930 -4.818 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.532 -0.209 -0.185 -6.125 -15.481 -4.355 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.195 -0.249 0.592 -5.905 -6.401 11.396 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B G36 4 1_555 -2.383 0.192 -0.337 8.369 -5.971 2.058 9 A_DC9:G3616_B A 9 ? B 16 ? ? ? 1 A DG 10 1_555 B DC 3 1_555 0.070 -0.183 0.117 2.875 -8.943 -1.515 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.276 -0.244 1.038 -9.276 -5.969 -5.842 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.049 -0.100 0.019 -4.955 -9.409 -4.407 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -1.004 0.496 3.912 -5.694 5.245 37.285 -0.058 0.650 4.047 8.096 8.790 38.052 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 1.048 0.356 3.564 2.285 -2.524 39.203 0.856 -1.260 3.588 -3.754 -3.397 39.345 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A G36 4 1_555 B DC 9 1_555 0.435 1.113 3.121 -2.580 0.009 31.431 2.046 -1.255 3.077 0.017 4.752 31.534 3 AA_DC3G364:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A G36 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.354 0.228 3.749 -3.144 4.509 37.097 -0.327 0.075 3.766 7.040 4.909 37.488 4 AA_G364DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 -0.316 -0.282 2.831 -2.251 -7.670 34.060 0.549 0.227 2.840 -12.875 3.779 34.958 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.372 -0.004 3.798 7.909 2.355 38.140 -0.340 0.565 3.790 3.553 -11.933 38.990 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 0.131 -0.377 3.523 -4.812 -2.892 27.095 -0.032 -1.535 3.468 -6.089 10.133 27.660 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B G36 4 1_555 -0.598 -0.148 2.702 5.559 4.759 29.667 -1.044 2.026 2.498 9.120 -10.653 30.536 8 AA_DT8DC9:G3616DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B G36 4 1_555 A DG 10 1_555 B DC 3 1_555 -0.171 1.897 3.798 -9.229 -0.083 49.720 2.230 -0.564 3.768 -0.098 10.868 50.516 9 AA_DC9DG10:DC15G3616_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.254 -0.038 3.880 -8.093 -12.374 31.087 2.339 0.551 3.823 -21.621 14.142 34.346 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 0.813 0.495 3.280 11.981 1.028 38.881 0.593 0.219 3.387 1.502 -17.497 40.629 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 1D85 _atom_sites.fract_transf_matrix[1][1] 0.039283 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024316 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014907 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_