data_1D8J # _entry.id 1D8J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D8J pdb_00001d8j 10.2210/pdb1d8j/pdb RCSB RCSB009887 ? ? WWPDB D_1000009887 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1D8K . unspecified TargetDB trt001000205.1 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D8J _pdbx_database_status.recvd_initial_deposition_date 1999-10-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Okuda, M.' 1 'Watanabe, Y.' 2 'Okamura, H.' 3 'Hanaoka, F.' 4 'Ohkuma, Y.' 5 'Nishimura, Y.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface.' _citation.journal_abbrev 'EMBO J.' _citation.journal_volume 19 _citation.page_first 1346 _citation.page_last 1356 _citation.year 2000 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10716934 _citation.pdbx_database_id_DOI 10.1093/emboj/19.6.1346 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Okuda, M.' 1 ? primary 'Watanabe, Y.' 2 ? primary 'Okamura, H.' 3 ? primary 'Hanaoka, F.' 4 ? primary 'Ohkuma, Y.' 5 ? primary 'Nishimura, Y.' 6 ? # _cell.entry_id 1D8J _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D8J _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'GENERAL TRANSCRIPTION FACTOR TFIIE-BETA' _entity.formula_weight 9287.704 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'CENTRAL CORE DOMAIN' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNV R ; _entity_poly.pdbx_seq_one_letter_code_can ;ALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNV R ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier trt001000205.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 LEU n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 TYR n 1 9 LYS n 1 10 PHE n 1 11 GLY n 1 12 VAL n 1 13 LEU n 1 14 ALA n 1 15 LYS n 1 16 ILE n 1 17 VAL n 1 18 ASN n 1 19 TYR n 1 20 MET n 1 21 LYS n 1 22 THR n 1 23 ARG n 1 24 HIS n 1 25 GLN n 1 26 ARG n 1 27 GLY n 1 28 ASP n 1 29 THR n 1 30 HIS n 1 31 PRO n 1 32 LEU n 1 33 THR n 1 34 LEU n 1 35 ASP n 1 36 GLU n 1 37 ILE n 1 38 LEU n 1 39 ASP n 1 40 GLU n 1 41 THR n 1 42 GLN n 1 43 HIS n 1 44 LEU n 1 45 ASP n 1 46 ILE n 1 47 GLY n 1 48 LEU n 1 49 LYS n 1 50 GLN n 1 51 LYS n 1 52 GLN n 1 53 TRP n 1 54 LEU n 1 55 MET n 1 56 THR n 1 57 GLU n 1 58 ALA n 1 59 LEU n 1 60 VAL n 1 61 ASN n 1 62 ASN n 1 63 PRO n 1 64 LYS n 1 65 ILE n 1 66 GLU n 1 67 VAL n 1 68 ILE n 1 69 ASP n 1 70 GLY n 1 71 LYS n 1 72 TYR n 1 73 ALA n 1 74 PHE n 1 75 LYS n 1 76 PRO n 1 77 LYS n 1 78 TYR n 1 79 ASN n 1 80 VAL n 1 81 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET3A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code T2EB_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P29084 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1D8J _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 81 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P29084 _struct_ref_seq.db_align_beg 66 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 146 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 81 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 3 2 1 3D_13C-SEPARATED_NOESY 1 3 1 3D_15N-SEPARATED_NOESY 2 4 1 4D_13C-SEPARATED_NOESY 1 5 1 HNHA 2 6 1 HMQC-J 2 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 300 _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '500mM NACL' _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1-2MM PROTEIN U-15N,13C; 20MM PHOSPHATE BUFFER, 500MM NACL' ? 3 '1-2MM PROTEIN ; 20MM PHOSPHATE BUFFER, 500MM NACL' ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 DMX Bruker 600 ? 2 AMX Bruker 500 ? # _pdbx_nmr_refine.entry_id 1D8J _pdbx_nmr_refine.method '4D SIMULATED ANNEALING' _pdbx_nmr_refine.details ;THE STRUCTURES ARE BASED ON A TOTAL OF 1224 RESTRAINTS, 1184 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 38 DIHEDRAL ANGLE RESTRAINTS, 40 DISTANCE RESTRAINTS FROM HYDROGEN BONDS. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1D8J _pdbx_nmr_details.text 'THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY.' # _pdbx_nmr_ensemble.entry_id 1D8J _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1D8J _pdbx_nmr_representative.conformer_id 20 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal processing NMRPipe 1.6 'DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER, BAX' 1 'data analysis' 'PIPP, CAPP, STAPP' 3.9 'GARRETT, POWERS, GRONENBORN, CLORE' 2 'structure solution' EMBOSS 5 'NAKAI, KIDERA, NAKAMURA' 3 refinement EMBOSS 5 'NAKAI, KIDERA, NAKAMURA' 4 # _exptl.entry_id 1D8J _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1D8J _struct.title 'SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D8J _struct_keywords.pdbx_keywords 'GENE REGULATION' _struct_keywords.text 'WINGED HELIX-TURN-HELIX, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, GENE REGULATION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 10 ? GLN A 25 ? PHE A 10 GLN A 25 1 ? 16 HELX_P HELX_P2 2 LEU A 34 ? GLU A 40 ? LEU A 34 GLU A 40 1 ? 7 HELX_P HELX_P3 3 LEU A 48 ? MET A 55 ? LEU A 48 MET A 55 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 32 ? LEU A 32 ? LEU A 32 LEU A 32 A 2 ILE A 65 ? ILE A 68 ? ILE A 65 ILE A 68 A 3 LYS A 71 ? PHE A 74 ? LYS A 71 PHE A 74 # _database_PDB_matrix.entry_id 1D8J _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1D8J _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 TYR 8 8 8 TYR TYR A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 TYR 19 19 19 TYR TYR A . n A 1 20 MET 20 20 20 MET MET A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 HIS 24 24 24 HIS HIS A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 HIS 30 30 30 HIS HIS A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 HIS 43 43 43 HIS HIS A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 GLN 52 52 52 GLN GLN A . n A 1 53 TRP 53 53 53 TRP TRP A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 MET 55 55 55 MET MET A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 ASP 69 69 69 ASP ASP A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 TYR 72 72 72 TYR TYR A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 PHE 74 74 74 PHE PHE A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 ARG 81 81 81 ARG ARG A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-04-26 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 9 ? ? 74.93 -59.90 2 1 ILE A 46 ? ? 26.28 -105.72 3 1 GLU A 57 ? ? -165.45 -67.39 4 1 LEU A 59 ? ? -79.71 27.93 5 1 VAL A 60 ? ? -134.88 -38.80 6 1 ILE A 68 ? ? -115.96 -98.66 7 1 TYR A 78 ? ? 36.15 49.22 8 1 ASN A 79 ? ? -164.60 -49.69 9 2 LEU A 2 ? ? -155.68 -64.79 10 2 SER A 5 ? ? 61.26 -173.10 11 2 LYS A 9 ? ? 82.62 -47.36 12 2 ASP A 28 ? ? -82.06 46.38 13 2 GLN A 42 ? ? -26.47 72.71 14 2 HIS A 43 ? ? -178.58 58.12 15 2 ASP A 45 ? ? -162.21 -45.06 16 2 ILE A 46 ? ? 40.88 -89.57 17 2 GLU A 57 ? ? -138.84 -54.21 18 2 LYS A 77 ? ? 71.60 -72.25 19 2 TYR A 78 ? ? -146.02 46.28 20 3 LYS A 9 ? ? -166.34 -47.87 21 3 ARG A 26 ? ? -163.87 -51.71 22 3 LEU A 44 ? ? 166.26 -52.59 23 3 GLU A 57 ? ? -160.32 -68.89 24 3 ASN A 61 ? ? -101.78 58.35 25 3 ILE A 68 ? ? -131.79 -96.65 26 3 LYS A 77 ? ? 55.73 -103.56 27 3 ASN A 79 ? ? 73.99 173.76 28 4 SER A 3 ? ? -153.82 -36.58 29 4 SER A 6 ? ? -83.79 34.23 30 4 TYR A 8 ? ? 51.95 -126.81 31 4 ASP A 28 ? ? -140.46 53.96 32 4 ASP A 45 ? ? -163.54 -40.65 33 4 ILE A 46 ? ? 18.18 -88.30 34 4 GLU A 57 ? ? -162.29 -66.86 35 4 VAL A 60 ? ? -133.22 -41.78 36 5 LEU A 2 ? ? 62.08 -81.73 37 5 SER A 5 ? ? 56.92 81.04 38 5 LYS A 9 ? ? 69.56 -67.88 39 5 GLU A 57 ? ? -138.77 -74.43 40 5 ASN A 61 ? ? -145.81 -15.78 41 5 ILE A 68 ? ? -116.94 -108.09 42 5 PRO A 76 ? ? -73.65 -81.86 43 5 LYS A 77 ? ? -161.42 41.10 44 5 ASN A 79 ? ? -167.52 105.39 45 6 LYS A 9 ? ? 175.27 -47.68 46 6 ARG A 26 ? ? -136.81 -47.09 47 6 ILE A 46 ? ? 22.47 -102.46 48 6 GLU A 57 ? ? -167.58 -55.16 49 6 LYS A 77 ? ? -164.35 -44.47 50 6 TYR A 78 ? ? -147.08 -64.24 51 6 ASN A 79 ? ? 57.61 80.39 52 7 LEU A 2 ? ? 61.56 -155.46 53 7 LYS A 9 ? ? 75.42 -64.89 54 7 GLN A 42 ? ? 68.83 -11.95 55 7 HIS A 43 ? ? -77.35 35.51 56 7 ASP A 45 ? ? -86.30 37.82 57 7 GLU A 57 ? ? -160.93 -49.89 58 7 ALA A 58 ? ? -81.93 -76.82 59 7 ASN A 61 ? ? -147.50 26.57 60 7 ILE A 68 ? ? -127.71 -112.78 61 7 ASN A 79 ? ? -154.98 47.35 62 8 LEU A 2 ? ? -150.35 29.66 63 8 SER A 3 ? ? -161.33 52.29 64 8 LYS A 9 ? ? 74.20 -61.80 65 8 ARG A 26 ? ? -165.53 -59.29 66 8 GLN A 42 ? ? -32.60 86.41 67 8 HIS A 43 ? ? -140.60 29.27 68 8 GLU A 57 ? ? -166.95 -67.29 69 8 LEU A 59 ? ? -80.27 37.45 70 8 ASP A 69 ? ? -160.32 77.60 71 8 TYR A 78 ? ? 57.52 -109.65 72 8 ASN A 79 ? ? 64.95 163.48 73 9 SER A 5 ? ? 71.55 135.56 74 9 SER A 6 ? ? -158.28 -55.05 75 9 LYS A 9 ? ? -151.44 -61.58 76 9 GLN A 42 ? ? 73.68 -88.84 77 9 HIS A 43 ? ? 31.82 -109.60 78 9 LEU A 44 ? ? 69.36 -64.71 79 9 ILE A 46 ? ? 47.51 137.78 80 9 GLU A 57 ? ? -170.50 -65.65 81 9 ASN A 61 ? ? 69.17 -9.34 82 9 ASP A 69 ? ? 59.16 19.90 83 9 LYS A 77 ? ? -157.50 -51.95 84 9 TYR A 78 ? ? -171.82 -52.40 85 10 LEU A 2 ? ? -149.92 28.29 86 10 TYR A 8 ? ? 66.25 124.31 87 10 LYS A 9 ? ? 65.10 -74.66 88 10 GLN A 42 ? ? 69.04 -10.52 89 10 HIS A 43 ? ? -78.06 39.15 90 10 GLU A 57 ? ? -167.75 -56.19 91 10 ILE A 68 ? ? -120.87 -95.90 92 10 PRO A 76 ? ? -67.02 -172.50 93 10 TYR A 78 ? ? -163.02 -49.31 94 11 SER A 3 ? ? -152.51 60.04 95 11 SER A 6 ? ? -140.48 54.32 96 11 TYR A 8 ? ? 50.71 15.82 97 11 LYS A 9 ? ? -169.34 -42.75 98 11 GLN A 42 ? ? 75.63 -61.00 99 11 ILE A 46 ? ? 55.63 -134.37 100 11 GLU A 57 ? ? -165.72 -66.77 101 11 LEU A 59 ? ? -81.46 31.70 102 11 VAL A 60 ? ? -134.41 -40.38 103 11 ILE A 68 ? ? -104.06 -60.80 104 11 ASP A 69 ? ? -152.45 76.23 105 11 ASN A 79 ? ? -165.79 -49.26 106 12 SER A 3 ? ? -153.22 -62.24 107 12 SER A 6 ? ? -150.35 56.30 108 12 TYR A 8 ? ? -114.38 -122.43 109 12 GLN A 42 ? ? -36.92 84.40 110 12 HIS A 43 ? ? -140.04 45.10 111 12 ILE A 46 ? ? 22.85 -98.42 112 12 GLU A 57 ? ? -102.00 -72.68 113 12 LEU A 59 ? ? -80.39 31.90 114 12 VAL A 60 ? ? -134.47 -47.68 115 13 SER A 3 ? ? 75.01 -57.44 116 13 LYS A 9 ? ? 69.12 -69.97 117 13 ARG A 26 ? ? -95.17 38.99 118 13 ASP A 28 ? ? -82.30 41.76 119 13 ASP A 45 ? ? -83.90 41.22 120 13 GLU A 57 ? ? -168.38 -70.33 121 13 LEU A 59 ? ? -79.10 28.59 122 13 LYS A 64 ? ? -99.00 36.52 123 13 ASN A 79 ? ? 70.22 143.78 124 14 SER A 3 ? ? -153.05 35.91 125 14 LYS A 9 ? ? 74.19 -65.82 126 14 GLN A 42 ? ? 67.54 -111.27 127 14 HIS A 43 ? ? 46.71 -116.30 128 14 LEU A 44 ? ? 78.44 -55.40 129 14 ILE A 46 ? ? 66.39 -74.11 130 14 GLU A 57 ? ? -152.46 -67.91 131 14 LYS A 77 ? ? -160.68 52.21 132 14 VAL A 80 ? ? 69.49 135.72 133 15 SER A 3 ? ? -153.16 76.78 134 15 LYS A 9 ? ? -154.90 -47.40 135 15 GLN A 25 ? ? -82.41 43.37 136 15 ARG A 26 ? ? -158.60 -51.43 137 15 GLU A 57 ? ? -172.77 -61.88 138 15 ILE A 68 ? ? -115.80 -114.07 139 15 LYS A 77 ? ? 70.76 128.26 140 16 SER A 3 ? ? -162.43 75.26 141 16 SER A 5 ? ? 64.17 -168.76 142 16 TYR A 8 ? ? -153.31 38.01 143 16 LYS A 9 ? ? -173.50 -51.04 144 16 ARG A 26 ? ? -154.45 -50.13 145 16 TYR A 78 ? ? -156.27 -61.13 146 16 ASN A 79 ? ? 70.25 -67.68 147 17 SER A 6 ? ? -83.52 -128.78 148 17 TYR A 8 ? ? 69.02 142.00 149 17 LYS A 9 ? ? 74.47 -45.69 150 17 ASP A 45 ? ? -87.22 38.72 151 17 GLU A 57 ? ? -166.79 -70.77 152 17 ALA A 58 ? ? -57.45 -80.09 153 17 ASN A 61 ? ? -145.66 54.57 154 18 LYS A 9 ? ? 72.99 -67.20 155 18 GLN A 25 ? ? -83.82 48.74 156 18 ARG A 26 ? ? -162.79 -50.14 157 18 GLN A 42 ? ? 72.45 -15.37 158 18 HIS A 43 ? ? -78.18 42.73 159 18 ILE A 46 ? ? 34.74 -132.07 160 18 GLU A 57 ? ? -132.90 -49.09 161 18 VAL A 60 ? ? -73.83 -93.46 162 18 ASN A 79 ? ? 61.42 -155.31 163 19 LEU A 2 ? ? 73.32 -68.06 164 19 SER A 5 ? ? -163.99 52.14 165 19 TYR A 8 ? ? 66.48 145.13 166 19 LYS A 9 ? ? 77.68 -48.71 167 19 ASP A 45 ? ? -84.59 42.53 168 19 GLU A 57 ? ? -165.75 -66.11 169 19 ASN A 61 ? ? -102.26 66.02 170 19 ILE A 68 ? ? -112.59 -120.97 171 19 LYS A 77 ? ? -166.36 -80.35 172 20 SER A 5 ? ? 46.15 -131.95 173 20 LYS A 9 ? ? 72.51 -65.18 174 20 GLN A 42 ? ? 74.44 -58.51 175 20 HIS A 43 ? ? -69.76 77.75 176 20 ILE A 46 ? ? 50.26 -70.48 177 20 GLU A 57 ? ? -168.17 -75.17 178 20 ILE A 68 ? ? -126.52 -125.15 179 20 LYS A 77 ? ? 71.22 -173.41 180 20 TYR A 78 ? ? -164.20 32.73 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 4 ARG A 23 ? ? 0.081 'SIDE CHAIN' 2 8 ARG A 23 ? ? 0.092 'SIDE CHAIN' #