data_1D9R # _entry.id 1D9R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D9R pdb_00001d9r 10.2210/pdb1d9r/pdb NDB BD0025 ? ? RCSB RCSB009921 ? ? WWPDB D_1000009921 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-11-05 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 4 'Structure model' struct_conn 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_conn_type 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_struct_conn.conn_type_id' 6 5 'Structure model' '_struct_conn.id' 7 5 'Structure model' '_struct_conn.pdbx_dist_value' 8 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 9 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 10 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 11 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 12 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 13 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 14 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 15 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 16 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 17 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 18 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 19 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 20 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 21 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 22 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 23 5 'Structure model' '_struct_conn.ptnr2_symmetry' 24 5 'Structure model' '_struct_conn_type.id' 25 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 26 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 27 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D9R _pdbx_database_status.recvd_initial_deposition_date 1999-10-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name NDB _pdbx_database_related.db_id BD0024 _pdbx_database_related.details 'CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G A BASE PAIRS' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gao, Y.-G.' 1 'Robinson, H.' 2 'Sanishvili, R.' 3 'Joachimiak, A.' 4 'Wang, A.H.-J.' 5 # _citation.id primary _citation.title 'Structure and recognition of sheared tandem G x A base pairs associated with human centromere DNA sequence at atomic resolution.' _citation.journal_abbrev Biochemistry _citation.journal_volume 38 _citation.page_first 16452 _citation.page_last 16460 _citation.year 1999 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10600106 _citation.pdbx_database_id_DOI 10.1021/bi9914614 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gao, Y.G.' 1 ? primary 'Robinson, H.' 2 ? primary 'Sanishvili, R.' 3 ? primary 'Joachimiak, A.' 4 ? primary 'Wang, A.H.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*GP*AP*AP*(BRU)P*GP*AP*GP*G)-3'" 3158.913 2 ? ? ? ? 2 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 1 ? ? ? ? 3 water nat water 18.015 133 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DG)(DA)(DA)(BRU)(DG)(DA)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCGAAUGAGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COBALT HEXAMMINE(III)' NCO 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DA n 1 5 DA n 1 6 BRU n 1 7 DG n 1 8 DA n 1 9 DG n 1 10 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 BRU 6 6 6 BRU +U A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DA 8 8 8 DA A A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n B 1 1 DC 1 11 11 DC C B . n B 1 2 DC 2 12 12 DC C B . n B 1 3 DG 3 13 13 DG G B . n B 1 4 DA 4 14 14 DA A B . n B 1 5 DA 5 15 15 DA A B . n B 1 6 BRU 6 16 16 BRU +U B . n B 1 7 DG 7 17 17 DG G B . n B 1 8 DA 8 18 18 DA A B . n B 1 9 DG 9 19 19 DG G B . n B 1 10 DG 10 20 20 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NCO 1 21 21 NCO NCO A . D 3 HOH 1 1004 1004 HOH HOH A . D 3 HOH 2 1005 1005 HOH HOH A . D 3 HOH 3 1008 1008 HOH HOH A . D 3 HOH 4 1009 1009 HOH HOH A . D 3 HOH 5 1011 1011 HOH HOH A . D 3 HOH 6 1012 1012 HOH HOH A . D 3 HOH 7 1015 1015 HOH HOH A . D 3 HOH 8 1017 1017 HOH HOH A . D 3 HOH 9 1018 1018 HOH HOH A . D 3 HOH 10 1020 1020 HOH HOH A . D 3 HOH 11 1021 1021 HOH HOH A . D 3 HOH 12 1029 1029 HOH HOH A . D 3 HOH 13 1030 1030 HOH HOH A . D 3 HOH 14 1031 1031 HOH HOH A . D 3 HOH 15 1035 1035 HOH HOH A . D 3 HOH 16 1036 1036 HOH HOH A . D 3 HOH 17 1037 1037 HOH HOH A . D 3 HOH 18 1038 1038 HOH HOH A . D 3 HOH 19 1039 1039 HOH HOH A . D 3 HOH 20 1040 1040 HOH HOH A . D 3 HOH 21 1041 1041 HOH HOH A . D 3 HOH 22 1045 1045 HOH HOH A . D 3 HOH 23 1048 1048 HOH HOH A . D 3 HOH 24 1053 1053 HOH HOH A . D 3 HOH 25 1055 1055 HOH HOH A . D 3 HOH 26 1056 1056 HOH HOH A . D 3 HOH 27 1057 1057 HOH HOH A . D 3 HOH 28 1058 1058 HOH HOH A . D 3 HOH 29 1061 1061 HOH HOH A . D 3 HOH 30 1062 1062 HOH HOH A . D 3 HOH 31 1064 1064 HOH HOH A . D 3 HOH 32 1065 1065 HOH HOH A . D 3 HOH 33 1069 1069 HOH HOH A . D 3 HOH 34 1071 1071 HOH HOH A . D 3 HOH 35 1073 1073 HOH HOH A . D 3 HOH 36 1078 1078 HOH HOH A . D 3 HOH 37 1082 1082 HOH HOH A . D 3 HOH 38 1084 1084 HOH HOH A . D 3 HOH 39 1085 1085 HOH HOH A . D 3 HOH 40 1090 1090 HOH HOH A . D 3 HOH 41 1094 1094 HOH HOH A . D 3 HOH 42 1096 1096 HOH HOH A . D 3 HOH 43 1097 1097 HOH HOH A . D 3 HOH 44 1098 1098 HOH HOH A . D 3 HOH 45 1099 1099 HOH HOH A . D 3 HOH 46 1101 1101 HOH HOH A . D 3 HOH 47 1102 1102 HOH HOH A . D 3 HOH 48 1103 1103 HOH HOH A . D 3 HOH 49 1104 1104 HOH HOH A . D 3 HOH 50 1106 1106 HOH HOH A . D 3 HOH 51 1108 1108 HOH HOH A . D 3 HOH 52 1112 1112 HOH HOH A . D 3 HOH 53 1116 1116 HOH HOH A . D 3 HOH 54 1117 1117 HOH HOH A . D 3 HOH 55 1120 1120 HOH HOH A . D 3 HOH 56 1121 1121 HOH HOH A . D 3 HOH 57 1122 1122 HOH HOH A . D 3 HOH 58 1124 1124 HOH HOH A . D 3 HOH 59 1126 1126 HOH HOH A . D 3 HOH 60 1127 1127 HOH HOH A . D 3 HOH 61 1128 1128 HOH HOH A . D 3 HOH 62 1130 1130 HOH HOH A . D 3 HOH 63 1131 1131 HOH HOH A . D 3 HOH 64 1132 1132 HOH HOH A . E 3 HOH 1 1001 1001 HOH HOH B . E 3 HOH 2 1002 1002 HOH HOH B . E 3 HOH 3 1003 1003 HOH HOH B . E 3 HOH 4 1006 1006 HOH HOH B . E 3 HOH 5 1007 1007 HOH HOH B . E 3 HOH 6 1010 1010 HOH HOH B . E 3 HOH 7 1013 1013 HOH HOH B . E 3 HOH 8 1014 1014 HOH HOH B . E 3 HOH 9 1016 1016 HOH HOH B . E 3 HOH 10 1019 1019 HOH HOH B . E 3 HOH 11 1022 1022 HOH HOH B . E 3 HOH 12 1023 1023 HOH HOH B . E 3 HOH 13 1024 1024 HOH HOH B . E 3 HOH 14 1025 1025 HOH HOH B . E 3 HOH 15 1026 1026 HOH HOH B . E 3 HOH 16 1027 1027 HOH HOH B . E 3 HOH 17 1028 1028 HOH HOH B . E 3 HOH 18 1032 1032 HOH HOH B . E 3 HOH 19 1033 1033 HOH HOH B . E 3 HOH 20 1034 1034 HOH HOH B . E 3 HOH 21 1042 1042 HOH HOH B . E 3 HOH 22 1043 1043 HOH HOH B . E 3 HOH 23 1044 1044 HOH HOH B . E 3 HOH 24 1046 1046 HOH HOH B . E 3 HOH 25 1047 1047 HOH HOH B . E 3 HOH 26 1049 1049 HOH HOH B . E 3 HOH 27 1050 1050 HOH HOH B . E 3 HOH 28 1051 1051 HOH HOH B . E 3 HOH 29 1052 1052 HOH HOH B . E 3 HOH 30 1054 1054 HOH HOH B . E 3 HOH 31 1059 1059 HOH HOH B . E 3 HOH 32 1060 1060 HOH HOH B . E 3 HOH 33 1063 1063 HOH HOH B . E 3 HOH 34 1066 1066 HOH HOH B . E 3 HOH 35 1067 1067 HOH HOH B . E 3 HOH 36 1068 1068 HOH HOH B . E 3 HOH 37 1070 1070 HOH HOH B . E 3 HOH 38 1072 1072 HOH HOH B . E 3 HOH 39 1074 1074 HOH HOH B . E 3 HOH 40 1075 1075 HOH HOH B . E 3 HOH 41 1076 1076 HOH HOH B . E 3 HOH 42 1077 1077 HOH HOH B . E 3 HOH 43 1079 1079 HOH HOH B . E 3 HOH 44 1080 1080 HOH HOH B . E 3 HOH 45 1081 1081 HOH HOH B . E 3 HOH 46 1083 1083 HOH HOH B . E 3 HOH 47 1086 1086 HOH HOH B . E 3 HOH 48 1087 1087 HOH HOH B . E 3 HOH 49 1088 1088 HOH HOH B . E 3 HOH 50 1089 1089 HOH HOH B . E 3 HOH 51 1091 1091 HOH HOH B . E 3 HOH 52 1092 1092 HOH HOH B . E 3 HOH 53 1093 1093 HOH HOH B . E 3 HOH 54 1095 1095 HOH HOH B . E 3 HOH 55 1100 1100 HOH HOH B . E 3 HOH 56 1105 1105 HOH HOH B . E 3 HOH 57 1107 1107 HOH HOH B . E 3 HOH 58 1109 1109 HOH HOH B . E 3 HOH 59 1110 1110 HOH HOH B . E 3 HOH 60 1111 1111 HOH HOH B . E 3 HOH 61 1113 1113 HOH HOH B . E 3 HOH 62 1114 1114 HOH HOH B . E 3 HOH 63 1115 1115 HOH HOH B . E 3 HOH 64 1118 1118 HOH HOH B . E 3 HOH 65 1119 1119 HOH HOH B . E 3 HOH 66 1123 1123 HOH HOH B . E 3 HOH 67 1125 1125 HOH HOH B . E 3 HOH 68 1129 1129 HOH HOH B . E 3 HOH 69 1133 1133 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 CNS refinement . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 CNS phasing . ? 5 # _cell.entry_id 1D9R _cell.length_a 22.711 _cell.length_b 67.216 _cell.length_c 72.504 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D9R _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 20 # _exptl.entry_id 1D9R _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.10 _exptl_crystal.density_percent_sol 41.0 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'MPD, COBALT HEXAMMINE, MGCL2, TRIS, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 '[CO(NH3)6]CL3' ? ? ? 1 2 1 MGCL2 ? ? ? 1 3 1 TRIS ? ? ? 1 4 1 MPD ? ? ? 1 5 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 123 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type CUSTOM-MADE _diffrn_detector.pdbx_collection_date 1998-08-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9611 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength 0.9611 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1D9R _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 10.0 _reflns.d_resolution_high 1.5 _reflns.number_obs 8923 _reflns.number_all 8923 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 33.7 _reflns.B_iso_Wilson_estimate 29.8 _reflns.pdbx_redundancy 10.5 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.56 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.377 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 8.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1D9R _refine.ls_number_reflns_obs 8923 _refine.ls_number_reflns_all 8923 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.0 _refine.ls_d_res_high 1.5 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.234 _refine.ls_R_factor_all 0.234 _refine.ls_R_factor_R_work 0.234 _refine.ls_R_factor_R_free 0.278 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 437 _refine.ls_number_parameters 2220 _refine.ls_number_restraints 1837 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'SHELXL SWAT OPTION' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method 'A POSTERIORI' _refine.details 'SHELXL HOPE OPTION' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MAD PHASING BY BROMINES' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'G.PARKINSON, J.VOJTECHOVSKY, L.CLOWNEY, A.T.BRUNGER, H.M.BERMAN' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 412 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 133 _refine_hist.number_atoms_total 554 _refine_hist.d_res_high 1.5 _refine_hist.d_res_low 10.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.024 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.052 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.003 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.072 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1D9R _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D9R _struct.title 'CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D9R _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'TANDEM GA BASE PAIRS, GA MISMATCH, DEOXYRIBONUCLEIC ACID, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1D9R _struct_ref.pdbx_db_accession 1D9R _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1D9R A 1 ? 10 ? 1D9R 1 ? 10 ? 1 10 2 1 1D9R B 1 ? 10 ? 1D9R 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DA 5 "O3'" ? ? ? 1_555 A BRU 6 P ? ? A DA 5 A BRU 6 1_555 ? ? ? ? ? ? ? 1.640 ? ? covale2 covale both ? A BRU 6 "O3'" ? ? ? 1_555 A DG 7 P ? ? A BRU 6 A DG 7 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale3 covale both ? B DA 5 "O3'" ? ? ? 1_555 B BRU 6 P ? ? B DA 15 B BRU 16 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale4 covale both ? B BRU 6 "O3'" ? ? ? 1_555 B DG 7 P ? ? B BRU 16 B DG 17 1_555 ? ? ? ? ? ? ? 1.592 ? ? metalc1 metalc ? ? C NCO . CO ? ? ? 1_555 C NCO . N2 ? ? A NCO 21 A NCO 21 3_555 ? ? ? ? ? ? ? 1.993 ? ? metalc2 metalc ? ? C NCO . CO ? ? ? 1_555 C NCO . N4 ? ? A NCO 21 A NCO 21 3_555 ? ? ? ? ? ? ? 2.019 ? ? metalc3 metalc ? ? C NCO . CO ? ? ? 1_555 C NCO . N5 ? ? A NCO 21 A NCO 21 3_555 ? ? ? ? ? ? ? 1.994 ? ? metalc4 metalc ? ? C NCO . CO ? ? ? 1_555 C NCO . N1 ? ? A NCO 21 A NCO 21 3_555 ? ? ? ? ? ? ? 2.018 ? ? metalc5 metalc ? ? C NCO . CO ? ? ? 1_555 C NCO . N6 ? ? A NCO 21 A NCO 21 3_555 ? ? ? ? ? ? ? 2.013 ? ? metalc6 metalc ? ? C NCO . CO ? ? ? 1_555 C NCO . N3 ? ? A NCO 21 A NCO 21 3_555 ? ? ? ? ? ? ? 2.012 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DA 8 N7 ? ? A DG 3 B DA 18 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 N3 ? ? ? 1_555 B DA 8 N6 ? ? A DG 3 B DA 18 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog9 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DG 7 N3 ? ? A DA 4 B DG 17 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog10 hydrog ? ? A DA 4 N7 ? ? ? 1_555 B DG 7 N2 ? ? A DA 4 B DG 17 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B BRU 6 N3 ? ? A DA 5 B BRU 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B BRU 6 O4 ? ? A DA 5 B BRU 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A BRU 6 N3 ? ? ? 1_555 B DA 5 N1 ? ? A BRU 6 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A BRU 6 O4 ? ? ? 1_555 B DA 5 N6 ? ? A BRU 6 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DA 4 N7 ? ? A DG 7 B DA 14 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog16 hydrog ? ? A DG 7 N3 ? ? ? 1_555 B DA 4 N6 ? ? A DG 7 B DA 14 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog17 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DG 3 N3 ? ? A DA 8 B DG 13 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog18 hydrog ? ? A DA 8 N7 ? ? ? 1_555 B DG 3 N2 ? ? A DA 8 B DG 13 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog19 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N2 ? C NCO . ? A NCO 21 ? 3_555 CO ? C NCO . ? A NCO 21 ? 1_555 N1 ? C NCO . ? A NCO 21 ? 1_555 88.0 ? 2 N2 ? C NCO . ? A NCO 21 ? 3_555 CO ? C NCO . ? A NCO 21 ? 1_555 N2 ? C NCO . ? A NCO 21 ? 1_555 175.6 ? 3 N1 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N2 ? C NCO . ? A NCO 21 ? 1_555 88.9 ? 4 N2 ? C NCO . ? A NCO 21 ? 3_555 CO ? C NCO . ? A NCO 21 ? 1_555 N3 ? C NCO . ? A NCO 21 ? 1_555 92.3 ? 5 N1 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N3 ? C NCO . ? A NCO 21 ? 1_555 89.5 ? 6 N2 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N3 ? C NCO . ? A NCO 21 ? 1_555 90.8 ? 7 N2 ? C NCO . ? A NCO 21 ? 3_555 CO ? C NCO . ? A NCO 21 ? 1_555 N4 ? C NCO . ? A NCO 21 ? 1_555 88.8 ? 8 N1 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N4 ? C NCO . ? A NCO 21 ? 1_555 90.2 ? 9 N2 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N4 ? C NCO . ? A NCO 21 ? 1_555 88.0 ? 10 N3 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N4 ? C NCO . ? A NCO 21 ? 1_555 178.8 ? 11 N2 ? C NCO . ? A NCO 21 ? 3_555 CO ? C NCO . ? A NCO 21 ? 1_555 N5 ? C NCO . ? A NCO 21 ? 1_555 0.0 ? 12 N1 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N5 ? C NCO . ? A NCO 21 ? 1_555 88.0 ? 13 N2 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N5 ? C NCO . ? A NCO 21 ? 1_555 175.6 ? 14 N3 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N5 ? C NCO . ? A NCO 21 ? 1_555 92.3 ? 15 N4 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N5 ? C NCO . ? A NCO 21 ? 1_555 88.8 ? 16 N2 ? C NCO . ? A NCO 21 ? 3_555 CO ? C NCO . ? A NCO 21 ? 1_555 N6 ? C NCO . ? A NCO 21 ? 1_555 90.8 ? 17 N1 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N6 ? C NCO . ? A NCO 21 ? 1_555 178.7 ? 18 N2 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N6 ? C NCO . ? A NCO 21 ? 1_555 92.3 ? 19 N3 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N6 ? C NCO . ? A NCO 21 ? 1_555 91.0 ? 20 N4 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N6 ? C NCO . ? A NCO 21 ? 1_555 89.4 ? 21 N5 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N6 ? C NCO . ? A NCO 21 ? 1_555 90.7 ? 22 N2 ? C NCO . ? A NCO 21 ? 3_555 CO ? C NCO . ? A NCO 21 ? 1_555 N4 ? C NCO . ? A NCO 21 ? 3_555 88.0 ? 23 N1 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N4 ? C NCO . ? A NCO 21 ? 3_555 0.0 ? 24 N2 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N4 ? C NCO . ? A NCO 21 ? 3_555 88.8 ? 25 N3 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N4 ? C NCO . ? A NCO 21 ? 3_555 89.5 ? 26 N4 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N4 ? C NCO . ? A NCO 21 ? 3_555 90.2 ? 27 N5 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N4 ? C NCO . ? A NCO 21 ? 3_555 88.1 ? 28 N6 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N4 ? C NCO . ? A NCO 21 ? 3_555 178.7 ? 29 N2 ? C NCO . ? A NCO 21 ? 3_555 CO ? C NCO . ? A NCO 21 ? 1_555 N5 ? C NCO . ? A NCO 21 ? 3_555 175.6 ? 30 N1 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N5 ? C NCO . ? A NCO 21 ? 3_555 88.9 ? 31 N2 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N5 ? C NCO . ? A NCO 21 ? 3_555 0.0 ? 32 N3 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N5 ? C NCO . ? A NCO 21 ? 3_555 90.8 ? 33 N4 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N5 ? C NCO . ? A NCO 21 ? 3_555 88.1 ? 34 N5 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N5 ? C NCO . ? A NCO 21 ? 3_555 175.6 ? 35 N6 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N5 ? C NCO . ? A NCO 21 ? 3_555 92.4 ? 36 N4 ? C NCO . ? A NCO 21 ? 3_555 CO ? C NCO . ? A NCO 21 ? 1_555 N5 ? C NCO . ? A NCO 21 ? 3_555 88.8 ? 37 N2 ? C NCO . ? A NCO 21 ? 3_555 CO ? C NCO . ? A NCO 21 ? 1_555 N1 ? C NCO . ? A NCO 21 ? 3_555 88.9 ? 38 N1 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N1 ? C NCO . ? A NCO 21 ? 3_555 90.1 ? 39 N2 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N1 ? C NCO . ? A NCO 21 ? 3_555 88.0 ? 40 N3 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N1 ? C NCO . ? A NCO 21 ? 3_555 178.7 ? 41 N4 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N1 ? C NCO . ? A NCO 21 ? 3_555 0.0 ? 42 N5 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N1 ? C NCO . ? A NCO 21 ? 3_555 88.9 ? 43 N6 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N1 ? C NCO . ? A NCO 21 ? 3_555 89.5 ? 44 N4 ? C NCO . ? A NCO 21 ? 3_555 CO ? C NCO . ? A NCO 21 ? 1_555 N1 ? C NCO . ? A NCO 21 ? 3_555 90.2 ? 45 N5 ? C NCO . ? A NCO 21 ? 3_555 CO ? C NCO . ? A NCO 21 ? 1_555 N1 ? C NCO . ? A NCO 21 ? 3_555 88.0 ? 46 N2 ? C NCO . ? A NCO 21 ? 3_555 CO ? C NCO . ? A NCO 21 ? 1_555 N6 ? C NCO . ? A NCO 21 ? 3_555 92.3 ? 47 N1 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N6 ? C NCO . ? A NCO 21 ? 3_555 89.5 ? 48 N2 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N6 ? C NCO . ? A NCO 21 ? 3_555 90.8 ? 49 N3 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N6 ? C NCO . ? A NCO 21 ? 3_555 0.0 ? 50 N4 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N6 ? C NCO . ? A NCO 21 ? 3_555 178.7 ? 51 N5 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N6 ? C NCO . ? A NCO 21 ? 3_555 92.4 ? 52 N6 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N6 ? C NCO . ? A NCO 21 ? 3_555 91.0 ? 53 N4 ? C NCO . ? A NCO 21 ? 3_555 CO ? C NCO . ? A NCO 21 ? 1_555 N6 ? C NCO . ? A NCO 21 ? 3_555 89.4 ? 54 N5 ? C NCO . ? A NCO 21 ? 3_555 CO ? C NCO . ? A NCO 21 ? 1_555 N6 ? C NCO . ? A NCO 21 ? 3_555 90.7 ? 55 N1 ? C NCO . ? A NCO 21 ? 3_555 CO ? C NCO . ? A NCO 21 ? 1_555 N6 ? C NCO . ? A NCO 21 ? 3_555 178.7 ? 56 N2 ? C NCO . ? A NCO 21 ? 3_555 CO ? C NCO . ? A NCO 21 ? 1_555 N3 ? C NCO . ? A NCO 21 ? 3_555 90.8 ? 57 N1 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N3 ? C NCO . ? A NCO 21 ? 3_555 178.7 ? 58 N2 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N3 ? C NCO . ? A NCO 21 ? 3_555 92.3 ? 59 N3 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N3 ? C NCO . ? A NCO 21 ? 3_555 90.9 ? 60 N4 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N3 ? C NCO . ? A NCO 21 ? 3_555 89.5 ? 61 N5 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N3 ? C NCO . ? A NCO 21 ? 3_555 90.8 ? 62 N6 ? C NCO . ? A NCO 21 ? 1_555 CO ? C NCO . ? A NCO 21 ? 1_555 N3 ? C NCO . ? A NCO 21 ? 3_555 0.0 ? 63 N4 ? C NCO . ? A NCO 21 ? 3_555 CO ? C NCO . ? A NCO 21 ? 1_555 N3 ? C NCO . ? A NCO 21 ? 3_555 178.8 ? 64 N5 ? C NCO . ? A NCO 21 ? 3_555 CO ? C NCO . ? A NCO 21 ? 1_555 N3 ? C NCO . ? A NCO 21 ? 3_555 92.3 ? 65 N1 ? C NCO . ? A NCO 21 ? 3_555 CO ? C NCO . ? A NCO 21 ? 1_555 N3 ? C NCO . ? A NCO 21 ? 3_555 89.5 ? 66 N6 ? C NCO . ? A NCO 21 ? 3_555 CO ? C NCO . ? A NCO 21 ? 1_555 N3 ? C NCO . ? A NCO 21 ? 3_555 91.0 ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NCO _struct_site.pdbx_auth_seq_id 21 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE NCO A 21' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 DC A 2 ? DC A 2 . ? 1_555 ? 2 AC1 10 DC A 2 ? DC A 2 . ? 3_555 ? 3 AC1 10 DG A 3 ? DG A 3 . ? 3_555 ? 4 AC1 10 DG A 3 ? DG A 3 . ? 1_555 ? 5 AC1 10 HOH D . ? HOH A 1056 . ? 1_555 ? 6 AC1 10 HOH D . ? HOH A 1056 . ? 3_555 ? 7 AC1 10 HOH D . ? HOH A 1069 . ? 3_555 ? 8 AC1 10 HOH D . ? HOH A 1069 . ? 1_555 ? 9 AC1 10 DG B 7 ? DG B 17 . ? 3_555 ? 10 AC1 10 DG B 7 ? DG B 17 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A DC 2 ? ? C2 A DC 2 ? ? O2 A DC 2 ? ? 114.94 118.90 -3.96 0.60 N 2 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 100.68 108.00 -7.32 0.70 N 3 1 C5 B DC 12 ? ? C4 B DC 12 ? ? N4 B DC 12 ? ? 115.86 120.20 -4.34 0.70 N 4 1 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 110.41 108.30 2.11 0.30 N 5 1 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 100.81 108.00 -7.19 0.70 N 6 1 C6 B DA 15 ? ? N1 B DA 15 ? ? C2 B DA 15 ? ? 122.45 118.60 3.85 0.60 N 7 1 C5 B DA 15 ? ? C6 B DA 15 ? ? N1 B DA 15 ? ? 114.25 117.70 -3.45 0.50 N 8 1 N1 B DA 15 ? ? C6 B DA 15 ? ? N6 B DA 15 ? ? 123.49 118.60 4.89 0.60 N 9 1 C6 B DG 17 ? ? N1 B DG 17 ? ? C2 B DG 17 ? ? 121.31 125.10 -3.79 0.60 N 10 1 C5 B DG 17 ? ? C6 B DG 17 ? ? N1 B DG 17 ? ? 114.55 111.50 3.05 0.50 N 11 1 C2 B DA 18 ? ? N3 B DA 18 ? ? C4 B DA 18 ? ? 107.56 110.60 -3.04 0.50 N 12 1 C2 B DG 19 ? ? N3 B DG 19 ? ? C4 B DG 19 ? ? 115.33 111.90 3.43 0.50 N 13 1 C5 B DG 19 ? ? C6 B DG 19 ? ? N1 B DG 19 ? ? 115.31 111.50 3.81 0.50 N 14 1 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? "C2'" B DG 20 ? ? 101.04 105.90 -4.86 0.80 N 15 1 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 100.49 108.00 -7.51 0.70 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A BRU 6 A BRU 6 ? DU ? 2 B BRU 6 B BRU 16 ? DU ? # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A NCO 21 ? C NCO . 2 1 A HOH 1117 ? D HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BRU N1 N N N 1 BRU C2 C N N 2 BRU N3 N N N 3 BRU C4 C N N 4 BRU C5 C N N 5 BRU C6 C N N 6 BRU O2 O N N 7 BRU O4 O N N 8 BRU BR BR N N 9 BRU "C1'" C N R 10 BRU "C2'" C N N 11 BRU "C3'" C N S 12 BRU "C4'" C N R 13 BRU "O3'" O N N 14 BRU "O4'" O N N 15 BRU "C5'" C N N 16 BRU "O5'" O N N 17 BRU P P N N 18 BRU OP1 O N N 19 BRU OP2 O N N 20 BRU OP3 O N N 21 BRU HN3 H N N 22 BRU H6 H N N 23 BRU "H1'" H N N 24 BRU "H2'" H N N 25 BRU "H2''" H N N 26 BRU "H3'" H N N 27 BRU "H4'" H N N 28 BRU "HO3'" H N N 29 BRU "H5'" H N N 30 BRU "H5''" H N N 31 BRU HOP2 H N N 32 BRU HOP3 H N N 33 DA OP3 O N N 34 DA P P N N 35 DA OP1 O N N 36 DA OP2 O N N 37 DA "O5'" O N N 38 DA "C5'" C N N 39 DA "C4'" C N R 40 DA "O4'" O N N 41 DA "C3'" C N S 42 DA "O3'" O N N 43 DA "C2'" C N N 44 DA "C1'" C N R 45 DA N9 N Y N 46 DA C8 C Y N 47 DA N7 N Y N 48 DA C5 C Y N 49 DA C6 C Y N 50 DA N6 N N N 51 DA N1 N Y N 52 DA C2 C Y N 53 DA N3 N Y N 54 DA C4 C Y N 55 DA HOP3 H N N 56 DA HOP2 H N N 57 DA "H5'" H N N 58 DA "H5''" H N N 59 DA "H4'" H N N 60 DA "H3'" H N N 61 DA "HO3'" H N N 62 DA "H2'" H N N 63 DA "H2''" H N N 64 DA "H1'" H N N 65 DA H8 H N N 66 DA H61 H N N 67 DA H62 H N N 68 DA H2 H N N 69 DC OP3 O N N 70 DC P P N N 71 DC OP1 O N N 72 DC OP2 O N N 73 DC "O5'" O N N 74 DC "C5'" C N N 75 DC "C4'" C N R 76 DC "O4'" O N N 77 DC "C3'" C N S 78 DC "O3'" O N N 79 DC "C2'" C N N 80 DC "C1'" C N R 81 DC N1 N N N 82 DC C2 C N N 83 DC O2 O N N 84 DC N3 N N N 85 DC C4 C N N 86 DC N4 N N N 87 DC C5 C N N 88 DC C6 C N N 89 DC HOP3 H N N 90 DC HOP2 H N N 91 DC "H5'" H N N 92 DC "H5''" H N N 93 DC "H4'" H N N 94 DC "H3'" H N N 95 DC "HO3'" H N N 96 DC "H2'" H N N 97 DC "H2''" H N N 98 DC "H1'" H N N 99 DC H41 H N N 100 DC H42 H N N 101 DC H5 H N N 102 DC H6 H N N 103 DG OP3 O N N 104 DG P P N N 105 DG OP1 O N N 106 DG OP2 O N N 107 DG "O5'" O N N 108 DG "C5'" C N N 109 DG "C4'" C N R 110 DG "O4'" O N N 111 DG "C3'" C N S 112 DG "O3'" O N N 113 DG "C2'" C N N 114 DG "C1'" C N R 115 DG N9 N Y N 116 DG C8 C Y N 117 DG N7 N Y N 118 DG C5 C Y N 119 DG C6 C N N 120 DG O6 O N N 121 DG N1 N N N 122 DG C2 C N N 123 DG N2 N N N 124 DG N3 N N N 125 DG C4 C Y N 126 DG HOP3 H N N 127 DG HOP2 H N N 128 DG "H5'" H N N 129 DG "H5''" H N N 130 DG "H4'" H N N 131 DG "H3'" H N N 132 DG "HO3'" H N N 133 DG "H2'" H N N 134 DG "H2''" H N N 135 DG "H1'" H N N 136 DG H8 H N N 137 DG H1 H N N 138 DG H21 H N N 139 DG H22 H N N 140 HOH O O N N 141 HOH H1 H N N 142 HOH H2 H N N 143 NCO CO CO N N 144 NCO N1 N N N 145 NCO N2 N N N 146 NCO N3 N N N 147 NCO N4 N N N 148 NCO N5 N N N 149 NCO N6 N N N 150 NCO HN11 H N N 151 NCO HN12 H N N 152 NCO HN13 H N N 153 NCO HN21 H N N 154 NCO HN22 H N N 155 NCO HN23 H N N 156 NCO HN31 H N N 157 NCO HN32 H N N 158 NCO HN33 H N N 159 NCO HN41 H N N 160 NCO HN42 H N N 161 NCO HN43 H N N 162 NCO HN51 H N N 163 NCO HN52 H N N 164 NCO HN53 H N N 165 NCO HN61 H N N 166 NCO HN62 H N N 167 NCO HN63 H N N 168 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BRU N1 C2 sing N N 1 BRU N1 C6 sing N N 2 BRU N1 "C1'" sing N N 3 BRU C2 N3 sing N N 4 BRU C2 O2 doub N N 5 BRU N3 C4 sing N N 6 BRU N3 HN3 sing N N 7 BRU C4 C5 sing N N 8 BRU C4 O4 doub N N 9 BRU C5 C6 doub N N 10 BRU C5 BR sing N N 11 BRU C6 H6 sing N N 12 BRU "C1'" "C2'" sing N N 13 BRU "C1'" "O4'" sing N N 14 BRU "C1'" "H1'" sing N N 15 BRU "C2'" "C3'" sing N N 16 BRU "C2'" "H2'" sing N N 17 BRU "C2'" "H2''" sing N N 18 BRU "C3'" "C4'" sing N N 19 BRU "C3'" "O3'" sing N N 20 BRU "C3'" "H3'" sing N N 21 BRU "C4'" "O4'" sing N N 22 BRU "C4'" "C5'" sing N N 23 BRU "C4'" "H4'" sing N N 24 BRU "O3'" "HO3'" sing N N 25 BRU "C5'" "O5'" sing N N 26 BRU "C5'" "H5'" sing N N 27 BRU "C5'" "H5''" sing N N 28 BRU "O5'" P sing N N 29 BRU P OP1 doub N N 30 BRU P OP2 sing N N 31 BRU P OP3 sing N N 32 BRU OP2 HOP2 sing N N 33 BRU OP3 HOP3 sing N N 34 DA OP3 P sing N N 35 DA OP3 HOP3 sing N N 36 DA P OP1 doub N N 37 DA P OP2 sing N N 38 DA P "O5'" sing N N 39 DA OP2 HOP2 sing N N 40 DA "O5'" "C5'" sing N N 41 DA "C5'" "C4'" sing N N 42 DA "C5'" "H5'" sing N N 43 DA "C5'" "H5''" sing N N 44 DA "C4'" "O4'" sing N N 45 DA "C4'" "C3'" sing N N 46 DA "C4'" "H4'" sing N N 47 DA "O4'" "C1'" sing N N 48 DA "C3'" "O3'" sing N N 49 DA "C3'" "C2'" sing N N 50 DA "C3'" "H3'" sing N N 51 DA "O3'" "HO3'" sing N N 52 DA "C2'" "C1'" sing N N 53 DA "C2'" "H2'" sing N N 54 DA "C2'" "H2''" sing N N 55 DA "C1'" N9 sing N N 56 DA "C1'" "H1'" sing N N 57 DA N9 C8 sing Y N 58 DA N9 C4 sing Y N 59 DA C8 N7 doub Y N 60 DA C8 H8 sing N N 61 DA N7 C5 sing Y N 62 DA C5 C6 sing Y N 63 DA C5 C4 doub Y N 64 DA C6 N6 sing N N 65 DA C6 N1 doub Y N 66 DA N6 H61 sing N N 67 DA N6 H62 sing N N 68 DA N1 C2 sing Y N 69 DA C2 N3 doub Y N 70 DA C2 H2 sing N N 71 DA N3 C4 sing Y N 72 DC OP3 P sing N N 73 DC OP3 HOP3 sing N N 74 DC P OP1 doub N N 75 DC P OP2 sing N N 76 DC P "O5'" sing N N 77 DC OP2 HOP2 sing N N 78 DC "O5'" "C5'" sing N N 79 DC "C5'" "C4'" sing N N 80 DC "C5'" "H5'" sing N N 81 DC "C5'" "H5''" sing N N 82 DC "C4'" "O4'" sing N N 83 DC "C4'" "C3'" sing N N 84 DC "C4'" "H4'" sing N N 85 DC "O4'" "C1'" sing N N 86 DC "C3'" "O3'" sing N N 87 DC "C3'" "C2'" sing N N 88 DC "C3'" "H3'" sing N N 89 DC "O3'" "HO3'" sing N N 90 DC "C2'" "C1'" sing N N 91 DC "C2'" "H2'" sing N N 92 DC "C2'" "H2''" sing N N 93 DC "C1'" N1 sing N N 94 DC "C1'" "H1'" sing N N 95 DC N1 C2 sing N N 96 DC N1 C6 sing N N 97 DC C2 O2 doub N N 98 DC C2 N3 sing N N 99 DC N3 C4 doub N N 100 DC C4 N4 sing N N 101 DC C4 C5 sing N N 102 DC N4 H41 sing N N 103 DC N4 H42 sing N N 104 DC C5 C6 doub N N 105 DC C5 H5 sing N N 106 DC C6 H6 sing N N 107 DG OP3 P sing N N 108 DG OP3 HOP3 sing N N 109 DG P OP1 doub N N 110 DG P OP2 sing N N 111 DG P "O5'" sing N N 112 DG OP2 HOP2 sing N N 113 DG "O5'" "C5'" sing N N 114 DG "C5'" "C4'" sing N N 115 DG "C5'" "H5'" sing N N 116 DG "C5'" "H5''" sing N N 117 DG "C4'" "O4'" sing N N 118 DG "C4'" "C3'" sing N N 119 DG "C4'" "H4'" sing N N 120 DG "O4'" "C1'" sing N N 121 DG "C3'" "O3'" sing N N 122 DG "C3'" "C2'" sing N N 123 DG "C3'" "H3'" sing N N 124 DG "O3'" "HO3'" sing N N 125 DG "C2'" "C1'" sing N N 126 DG "C2'" "H2'" sing N N 127 DG "C2'" "H2''" sing N N 128 DG "C1'" N9 sing N N 129 DG "C1'" "H1'" sing N N 130 DG N9 C8 sing Y N 131 DG N9 C4 sing Y N 132 DG C8 N7 doub Y N 133 DG C8 H8 sing N N 134 DG N7 C5 sing Y N 135 DG C5 C6 sing N N 136 DG C5 C4 doub Y N 137 DG C6 O6 doub N N 138 DG C6 N1 sing N N 139 DG N1 C2 sing N N 140 DG N1 H1 sing N N 141 DG C2 N2 sing N N 142 DG C2 N3 doub N N 143 DG N2 H21 sing N N 144 DG N2 H22 sing N N 145 DG N3 C4 sing N N 146 HOH O H1 sing N N 147 HOH O H2 sing N N 148 NCO CO N1 sing N N 149 NCO CO N2 sing N N 150 NCO CO N3 sing N N 151 NCO CO N4 sing N N 152 NCO CO N5 sing N N 153 NCO CO N6 sing N N 154 NCO N1 HN11 sing N N 155 NCO N1 HN12 sing N N 156 NCO N1 HN13 sing N N 157 NCO N2 HN21 sing N N 158 NCO N2 HN22 sing N N 159 NCO N2 HN23 sing N N 160 NCO N3 HN31 sing N N 161 NCO N3 HN32 sing N N 162 NCO N3 HN33 sing N N 163 NCO N4 HN41 sing N N 164 NCO N4 HN42 sing N N 165 NCO N4 HN43 sing N N 166 NCO N5 HN51 sing N N 167 NCO N5 HN52 sing N N 168 NCO N5 HN53 sing N N 169 NCO N6 HN61 sing N N 170 NCO N6 HN62 sing N N 171 NCO N6 HN63 sing N N 172 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1D9R 'double helix' 1D9R 'b-form double helix' 1D9R 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.203 -0.307 0.434 -4.962 -10.942 2.328 1 A_DC1:DG20_B A 1 ? B 20 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.223 -0.117 -0.123 2.480 6.284 -0.705 2 A_DC2:DG19_B A 2 ? B 19 ? 19 1 1 A DG 3 1_555 B DA 8 1_555 6.473 -4.480 0.769 29.510 3.876 3.732 3 A_DG3:DA18_B A 3 ? B 18 ? 11 9 1 A DA 4 1_555 B DG 7 1_555 -6.513 -4.415 0.592 -32.870 -8.907 4.664 4 A_DA4:DG17_B A 4 ? B 17 ? 11 9 1 A DA 5 1_555 B BRU 6 1_555 0.053 -0.064 -0.020 -7.746 5.183 3.011 5 A_DA5:BRU16_B A 5 ? B 16 ? 20 1 1 A BRU 6 1_555 B DA 5 1_555 0.038 -0.158 -0.312 4.136 5.412 -1.389 6 A_BRU6:DA15_B A 6 ? B 15 ? 20 1 1 A DG 7 1_555 B DA 4 1_555 6.665 -4.624 0.673 36.149 -5.408 1.144 7 A_DG7:DA14_B A 7 ? B 14 ? 11 9 1 A DA 8 1_555 B DG 3 1_555 -6.544 -4.478 0.612 -31.466 -1.026 3.016 8 A_DA8:DG13_B A 8 ? B 13 ? 11 9 1 A DG 9 1_555 B DC 2 1_555 -0.231 -0.163 -0.031 1.028 8.310 -2.448 9 A_DG9:DC12_B A 9 ? B 12 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 -0.170 -0.193 0.324 12.046 -8.424 -2.740 10 A_DG10:DC11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DC 2 1_555 B DG 9 1_555 0.909 1.199 3.312 6.303 3.749 34.761 1.387 -0.516 3.524 6.191 -10.406 35.503 1 AA_DC1DC2:DG19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DA 8 1_555 0.529 1.556 2.952 -4.864 6.935 56.794 1.273 -0.795 3.056 7.246 5.083 57.371 2 AA_DC2DG3:DA18DG19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DG 3 1_555 B DA 8 1_555 A DA 4 1_555 B DG 7 1_555 0.200 -1.263 4.859 -1.911 -3.206 -5.007 32.946 -10.891 3.310 31.544 -18.796 -6.244 3 AA_DG3DA4:DG17DA18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DA 4 1_555 B DG 7 1_555 A DA 5 1_555 B BRU 6 1_555 -0.930 1.341 3.198 2.725 1.974 64.531 1.173 0.983 3.196 1.848 -2.551 64.609 4 AA_DA4DA5:BRU16DG17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DA 5 1_555 B BRU 6 1_555 A BRU 6 1_555 B DA 5 1_555 -0.198 -0.285 3.139 2.907 5.158 23.289 -2.259 1.363 2.961 12.520 -7.056 24.020 5 AA_DA5BRU6:DA15BRU16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A BRU 6 1_555 B DA 5 1_555 A DG 7 1_555 B DA 4 1_555 0.835 1.959 3.029 -3.308 4.519 67.223 1.601 -0.872 3.100 4.074 2.983 67.428 6 AA_BRU6DG7:DA14DA15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DG 7 1_555 B DA 4 1_555 A DA 8 1_555 B DG 3 1_555 -0.072 -1.456 4.876 0.603 -0.103 -7.647 11.370 2.315 4.847 0.769 4.510 -7.671 7 AA_DG7DA8:DG13DA14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DA 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 -0.713 1.493 2.834 2.545 3.074 57.624 1.402 0.857 2.872 3.184 -2.637 57.750 8 AA_DA8DG9:DC12DG13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DG 9 1_555 B DC 2 1_555 A DG 10 1_555 B DC 1 1_555 -0.204 0.093 3.287 -4.752 8.111 31.662 -1.233 -0.459 3.209 14.471 8.478 32.994 9 AA_DG9DG10:DC11DC12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _atom_sites.entry_id 1D9R _atom_sites.fract_transf_matrix[1][1] 0.044032 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014877 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013792 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C CO N O P # loop_