data_1DFU # _entry.id 1DFU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DFU pdb_00001dfu 10.2210/pdb1dfu/pdb NDB PR0018 ? ? RCSB RCSB010047 ? ? WWPDB D_1000010047 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-12-02 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 21 4 'Structure model' '_pdbx_struct_conn_angle.value' 22 4 'Structure model' '_struct_conn.pdbx_dist_value' 23 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 37 4 'Structure model' '_struct_conn.ptnr2_symmetry' 38 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DFU _pdbx_database_status.recvd_initial_deposition_date 1999-11-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lu, M.' 1 'Steitz, T.A.' 2 # _citation.id primary _citation.title 'Structure of Escherichia coli ribosomal protein L25 complexed with a 5S rRNA fragment at 1.8-A resolution.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 97 _citation.page_first 2023 _citation.page_last 2028 _citation.year 2000 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10696113 _citation.pdbx_database_id_DOI 10.1073/pnas.97.5.2023 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lu, M.' 1 ? primary 'Steitz, T.A.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '5S RRNA' 6155.753 1 ? ? 'LOOP E-HELIX IV FRAGMENT' 'A FRAGMENT OF 5S RRNA IN 50S RIBOSOMAL SUBUNIT' 2 polymer syn '5S RRNA' 6206.706 1 ? ? 'LOOP E-HELIX IV FRAGMENT' 'A FRAGMENT OF 5S RRNA IN 50S RIBOSOMAL SUBUNIT' 3 polymer man 'RIBOSOMAL PROTEIN L25' 10713.465 1 ? ? ? 'PROTEIN FROM THE LARGE RIBOSOMAL SUBUNIT' 4 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 5 water nat water 18.015 242 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no CCCAUGCGAGAGUAGGGAC CCCAUGCGAGAGUAGGGAC M ? 2 polyribonucleotide no no UGCCGAUGGUAGUGUGGGG UGCCGAUGGUAGUGUGGGG N ? 3 'polypeptide(L)' no no ;MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRH PYKPKLQHIDFVRA ; ;MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRH PYKPKLQHIDFVRA ; P ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MAGNESIUM ION' MG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 C n 1 3 C n 1 4 A n 1 5 U n 1 6 G n 1 7 C n 1 8 G n 1 9 A n 1 10 G n 1 11 A n 1 12 G n 1 13 U n 1 14 A n 1 15 G n 1 16 G n 1 17 G n 1 18 A n 1 19 C n 2 1 U n 2 2 G n 2 3 C n 2 4 C n 2 5 G n 2 6 A n 2 7 U n 2 8 G n 2 9 G n 2 10 U n 2 11 A n 2 12 G n 2 13 U n 2 14 G n 2 15 U n 2 16 G n 2 17 G n 2 18 G n 2 19 G n 3 1 MET n 3 2 PHE n 3 3 THR n 3 4 ILE n 3 5 ASN n 3 6 ALA n 3 7 GLU n 3 8 VAL n 3 9 ARG n 3 10 LYS n 3 11 GLU n 3 12 GLN n 3 13 GLY n 3 14 LYS n 3 15 GLY n 3 16 ALA n 3 17 SER n 3 18 ARG n 3 19 ARG n 3 20 LEU n 3 21 ARG n 3 22 ALA n 3 23 ALA n 3 24 ASN n 3 25 LYS n 3 26 PHE n 3 27 PRO n 3 28 ALA n 3 29 ILE n 3 30 ILE n 3 31 TYR n 3 32 GLY n 3 33 GLY n 3 34 LYS n 3 35 GLU n 3 36 ALA n 3 37 PRO n 3 38 LEU n 3 39 ALA n 3 40 ILE n 3 41 GLU n 3 42 LEU n 3 43 ASP n 3 44 HIS n 3 45 ASP n 3 46 LYS n 3 47 VAL n 3 48 MET n 3 49 ASN n 3 50 MET n 3 51 GLN n 3 52 ALA n 3 53 LYS n 3 54 ALA n 3 55 GLU n 3 56 PHE n 3 57 TYR n 3 58 SER n 3 59 GLU n 3 60 VAL n 3 61 LEU n 3 62 THR n 3 63 ILE n 3 64 VAL n 3 65 VAL n 3 66 ASP n 3 67 GLY n 3 68 LYS n 3 69 GLU n 3 70 ILE n 3 71 LYS n 3 72 VAL n 3 73 LYS n 3 74 ALA n 3 75 GLN n 3 76 ASP n 3 77 VAL n 3 78 GLN n 3 79 ARG n 3 80 HIS n 3 81 PRO n 3 82 TYR n 3 83 LYS n 3 84 PRO n 3 85 LYS n 3 86 LEU n 3 87 GLN n 3 88 HIS n 3 89 ILE n 3 90 ASP n 3 91 PHE n 3 92 VAL n 3 93 ARG n 3 94 ALA n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PL25 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'THIS SEQUENCE OCCURS NATURALLY IN E.COLI' 2 1 sample ? ? ? ? ? 'THIS SEQUENCE OCCURS NATURALLY IN E.COLI' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 91 91 C C M . n A 1 2 C 2 92 92 C C M . n A 1 3 C 3 93 93 C C M . n A 1 4 A 4 94 94 A A M . n A 1 5 U 5 95 95 U U M . n A 1 6 G 6 96 96 G G M . n A 1 7 C 7 97 97 C C M . n A 1 8 G 8 98 98 G G M . n A 1 9 A 9 99 99 A A M . n A 1 10 G 10 100 100 G G M . n A 1 11 A 11 101 101 A A M . n A 1 12 G 12 102 102 G G M . n A 1 13 U 13 103 103 U U M . n A 1 14 A 14 104 104 A A M . n A 1 15 G 15 105 105 G G M . n A 1 16 G 16 106 106 G G M . n A 1 17 G 17 107 107 G G M . n A 1 18 A 18 108 108 A A M . n A 1 19 C 19 109 109 C C M . n B 2 1 U 1 68 68 U U N . n B 2 2 G 2 69 69 G G N . n B 2 3 C 3 70 70 C C N . n B 2 4 C 4 71 71 C C N . n B 2 5 G 5 72 72 G G N . n B 2 6 A 6 73 73 A A N . n B 2 7 U 7 74 74 U U N . n B 2 8 G 8 75 75 G G N . n B 2 9 G 9 76 76 G G N . n B 2 10 U 10 77 77 U U N . n B 2 11 A 11 78 78 A A N . n B 2 12 G 12 79 79 G G N . n B 2 13 U 13 80 80 U U N . n B 2 14 G 14 81 81 G G N . n B 2 15 U 15 82 82 U U N . n B 2 16 G 16 83 83 G G N . n B 2 17 G 17 84 84 G G N . n B 2 18 G 18 85 85 G G N . n B 2 19 G 19 86 86 G G N . n C 3 1 MET 1 1 1 MET MET P . n C 3 2 PHE 2 2 2 PHE PHE P . n C 3 3 THR 3 3 3 THR THR P . n C 3 4 ILE 4 4 4 ILE ILE P . n C 3 5 ASN 5 5 5 ASN ASN P . n C 3 6 ALA 6 6 6 ALA ALA P . n C 3 7 GLU 7 7 7 GLU GLU P . n C 3 8 VAL 8 8 8 VAL VAL P . n C 3 9 ARG 9 9 9 ARG ARG P . n C 3 10 LYS 10 10 10 LYS LYS P . n C 3 11 GLU 11 11 11 GLU GLU P . n C 3 12 GLN 12 12 12 GLN GLN P . n C 3 13 GLY 13 13 13 GLY GLY P . n C 3 14 LYS 14 14 14 LYS LYS P . n C 3 15 GLY 15 15 15 GLY GLY P . n C 3 16 ALA 16 16 16 ALA ALA P . n C 3 17 SER 17 17 17 SER SER P . n C 3 18 ARG 18 18 18 ARG ARG P . n C 3 19 ARG 19 19 19 ARG ARG P . n C 3 20 LEU 20 20 20 LEU LEU P . n C 3 21 ARG 21 21 21 ARG ARG P . n C 3 22 ALA 22 22 22 ALA ALA P . n C 3 23 ALA 23 23 23 ALA ALA P . n C 3 24 ASN 24 24 24 ASN ASN P . n C 3 25 LYS 25 25 25 LYS LYS P . n C 3 26 PHE 26 26 26 PHE PHE P . n C 3 27 PRO 27 27 27 PRO PRO P . n C 3 28 ALA 28 28 28 ALA ALA P . n C 3 29 ILE 29 29 29 ILE ILE P . n C 3 30 ILE 30 30 30 ILE ILE P . n C 3 31 TYR 31 31 31 TYR TYR P . n C 3 32 GLY 32 32 32 GLY GLY P . n C 3 33 GLY 33 33 33 GLY GLY P . n C 3 34 LYS 34 34 34 LYS LYS P . n C 3 35 GLU 35 35 35 GLU GLU P . n C 3 36 ALA 36 36 36 ALA ALA P . n C 3 37 PRO 37 37 37 PRO PRO P . n C 3 38 LEU 38 38 38 LEU LEU P . n C 3 39 ALA 39 39 39 ALA ALA P . n C 3 40 ILE 40 40 40 ILE ILE P . n C 3 41 GLU 41 41 41 GLU GLU P . n C 3 42 LEU 42 42 42 LEU LEU P . n C 3 43 ASP 43 43 43 ASP ASP P . n C 3 44 HIS 44 44 44 HIS HIS P . n C 3 45 ASP 45 45 45 ASP ASP P . n C 3 46 LYS 46 46 46 LYS LYS P . n C 3 47 VAL 47 47 47 VAL VAL P . n C 3 48 MET 48 48 48 MET MET P . n C 3 49 ASN 49 49 49 ASN ASN P . n C 3 50 MET 50 50 50 MET MET P . n C 3 51 GLN 51 51 51 GLN GLN P . n C 3 52 ALA 52 52 52 ALA ALA P . n C 3 53 LYS 53 53 53 LYS LYS P . n C 3 54 ALA 54 54 54 ALA ALA P . n C 3 55 GLU 55 55 55 GLU GLU P . n C 3 56 PHE 56 56 56 PHE PHE P . n C 3 57 TYR 57 57 57 TYR TYR P . n C 3 58 SER 58 58 58 SER SER P . n C 3 59 GLU 59 59 59 GLU GLU P . n C 3 60 VAL 60 60 60 VAL VAL P . n C 3 61 LEU 61 61 61 LEU LEU P . n C 3 62 THR 62 62 62 THR THR P . n C 3 63 ILE 63 63 63 ILE ILE P . n C 3 64 VAL 64 64 64 VAL VAL P . n C 3 65 VAL 65 65 65 VAL VAL P . n C 3 66 ASP 66 66 66 ASP ASP P . n C 3 67 GLY 67 67 67 GLY GLY P . n C 3 68 LYS 68 68 68 LYS LYS P . n C 3 69 GLU 69 69 69 GLU GLU P . n C 3 70 ILE 70 70 70 ILE ILE P . n C 3 71 LYS 71 71 71 LYS LYS P . n C 3 72 VAL 72 72 72 VAL VAL P . n C 3 73 LYS 73 73 73 LYS LYS P . n C 3 74 ALA 74 74 74 ALA ALA P . n C 3 75 GLN 75 75 75 GLN GLN P . n C 3 76 ASP 76 76 76 ASP ASP P . n C 3 77 VAL 77 77 77 VAL VAL P . n C 3 78 GLN 78 78 78 GLN GLN P . n C 3 79 ARG 79 79 79 ARG ARG P . n C 3 80 HIS 80 80 80 HIS HIS P . n C 3 81 PRO 81 81 81 PRO PRO P . n C 3 82 TYR 82 82 82 TYR TYR P . n C 3 83 LYS 83 83 83 LYS LYS P . n C 3 84 PRO 84 84 84 PRO PRO P . n C 3 85 LYS 85 85 85 LYS LYS P . n C 3 86 LEU 86 86 86 LEU LEU P . n C 3 87 GLN 87 87 87 GLN GLN P . n C 3 88 HIS 88 88 88 HIS HIS P . n C 3 89 ILE 89 89 89 ILE ILE P . n C 3 90 ASP 90 90 90 ASP ASP P . n C 3 91 PHE 91 91 91 PHE PHE P . n C 3 92 VAL 92 92 92 VAL VAL P . n C 3 93 ARG 93 93 93 ARG ARG P . n C 3 94 ALA 94 94 94 ALA ALA P . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG 1 501 1 MG MG M . E 4 MG 1 502 2 MG MG M . F 4 MG 1 503 3 MG MG M . G 4 MG 1 505 5 MG MG M . H 4 MG 1 504 4 MG MG N . I 5 HOH 1 506 2 HOH HOH M . I 5 HOH 2 507 3 HOH HOH M . I 5 HOH 3 508 4 HOH HOH M . I 5 HOH 4 509 7 HOH HOH M . I 5 HOH 5 510 11 HOH HOH M . I 5 HOH 6 511 12 HOH HOH M . I 5 HOH 7 512 15 HOH HOH M . I 5 HOH 8 513 19 HOH HOH M . I 5 HOH 9 514 20 HOH HOH M . I 5 HOH 10 515 23 HOH HOH M . I 5 HOH 11 516 29 HOH HOH M . I 5 HOH 12 517 30 HOH HOH M . I 5 HOH 13 518 33 HOH HOH M . I 5 HOH 14 519 34 HOH HOH M . I 5 HOH 15 520 35 HOH HOH M . I 5 HOH 16 521 36 HOH HOH M . I 5 HOH 17 522 38 HOH HOH M . I 5 HOH 18 523 45 HOH HOH M . I 5 HOH 19 524 46 HOH HOH M . I 5 HOH 20 525 49 HOH HOH M . I 5 HOH 21 526 50 HOH HOH M . I 5 HOH 22 527 51 HOH HOH M . I 5 HOH 23 528 58 HOH HOH M . I 5 HOH 24 529 60 HOH HOH M . I 5 HOH 25 530 61 HOH HOH M . I 5 HOH 26 531 78 HOH HOH M . I 5 HOH 27 532 79 HOH HOH M . I 5 HOH 28 533 81 HOH HOH M . I 5 HOH 29 534 82 HOH HOH M . I 5 HOH 30 535 86 HOH HOH M . I 5 HOH 31 536 88 HOH HOH M . I 5 HOH 32 537 92 HOH HOH M . I 5 HOH 33 538 93 HOH HOH M . I 5 HOH 34 539 96 HOH HOH M . I 5 HOH 35 540 98 HOH HOH M . I 5 HOH 36 541 99 HOH HOH M . I 5 HOH 37 542 100 HOH HOH M . I 5 HOH 38 543 101 HOH HOH M . I 5 HOH 39 544 102 HOH HOH M . I 5 HOH 40 545 103 HOH HOH M . I 5 HOH 41 546 107 HOH HOH M . I 5 HOH 42 547 115 HOH HOH M . I 5 HOH 43 548 118 HOH HOH M . I 5 HOH 44 549 120 HOH HOH M . I 5 HOH 45 550 121 HOH HOH M . I 5 HOH 46 551 122 HOH HOH M . I 5 HOH 47 552 124 HOH HOH M . I 5 HOH 48 553 125 HOH HOH M . I 5 HOH 49 554 127 HOH HOH M . I 5 HOH 50 555 129 HOH HOH M . I 5 HOH 51 556 130 HOH HOH M . I 5 HOH 52 557 139 HOH HOH M . I 5 HOH 53 558 142 HOH HOH M . I 5 HOH 54 559 143 HOH HOH M . I 5 HOH 55 560 144 HOH HOH M . I 5 HOH 56 561 153 HOH HOH M . I 5 HOH 57 562 158 HOH HOH M . I 5 HOH 58 563 159 HOH HOH M . I 5 HOH 59 564 160 HOH HOH M . I 5 HOH 60 565 171 HOH HOH M . I 5 HOH 61 566 172 HOH HOH M . I 5 HOH 62 567 173 HOH HOH M . I 5 HOH 63 568 177 HOH HOH M . I 5 HOH 64 569 178 HOH HOH M . I 5 HOH 65 570 181 HOH HOH M . I 5 HOH 66 571 190 HOH HOH M . I 5 HOH 67 572 191 HOH HOH M . I 5 HOH 68 573 192 HOH HOH M . I 5 HOH 69 574 194 HOH HOH M . I 5 HOH 70 575 197 HOH HOH M . I 5 HOH 71 576 198 HOH HOH M . I 5 HOH 72 577 202 HOH HOH M . I 5 HOH 73 578 203 HOH HOH M . I 5 HOH 74 579 206 HOH HOH M . I 5 HOH 75 580 212 HOH HOH M . I 5 HOH 76 581 214 HOH HOH M . I 5 HOH 77 582 216 HOH HOH M . I 5 HOH 78 583 219 HOH HOH M . I 5 HOH 79 584 220 HOH HOH M . I 5 HOH 80 585 221 HOH HOH M . I 5 HOH 81 586 222 HOH HOH M . I 5 HOH 82 587 223 HOH HOH M . I 5 HOH 83 588 224 HOH HOH M . I 5 HOH 84 589 227 HOH HOH M . I 5 HOH 85 590 237 HOH HOH M . I 5 HOH 86 591 240 HOH HOH M . I 5 HOH 87 592 242 HOH HOH M . J 5 HOH 1 505 5 HOH HOH N . J 5 HOH 2 506 8 HOH HOH N . J 5 HOH 3 507 9 HOH HOH N . J 5 HOH 4 508 10 HOH HOH N . J 5 HOH 5 509 16 HOH HOH N . J 5 HOH 6 510 25 HOH HOH N . J 5 HOH 7 511 27 HOH HOH N . J 5 HOH 8 512 28 HOH HOH N . J 5 HOH 9 513 31 HOH HOH N . J 5 HOH 10 514 32 HOH HOH N . J 5 HOH 11 515 41 HOH HOH N . J 5 HOH 12 516 42 HOH HOH N . J 5 HOH 13 517 43 HOH HOH N . J 5 HOH 14 518 44 HOH HOH N . J 5 HOH 15 519 47 HOH HOH N . J 5 HOH 16 520 48 HOH HOH N . J 5 HOH 17 521 62 HOH HOH N . J 5 HOH 18 522 63 HOH HOH N . J 5 HOH 19 523 80 HOH HOH N . J 5 HOH 20 524 83 HOH HOH N . J 5 HOH 21 525 84 HOH HOH N . J 5 HOH 22 526 85 HOH HOH N . J 5 HOH 23 527 87 HOH HOH N . J 5 HOH 24 528 89 HOH HOH N . J 5 HOH 25 529 90 HOH HOH N . J 5 HOH 26 530 91 HOH HOH N . J 5 HOH 27 531 104 HOH HOH N . J 5 HOH 28 532 105 HOH HOH N . J 5 HOH 29 533 106 HOH HOH N . J 5 HOH 30 534 108 HOH HOH N . J 5 HOH 31 535 109 HOH HOH N . J 5 HOH 32 536 110 HOH HOH N . J 5 HOH 33 537 111 HOH HOH N . J 5 HOH 34 538 117 HOH HOH N . J 5 HOH 35 539 119 HOH HOH N . J 5 HOH 36 540 126 HOH HOH N . J 5 HOH 37 541 128 HOH HOH N . J 5 HOH 38 542 136 HOH HOH N . J 5 HOH 39 543 137 HOH HOH N . J 5 HOH 40 544 138 HOH HOH N . J 5 HOH 41 545 140 HOH HOH N . J 5 HOH 42 546 141 HOH HOH N . J 5 HOH 43 547 148 HOH HOH N . J 5 HOH 44 548 149 HOH HOH N . J 5 HOH 45 549 150 HOH HOH N . J 5 HOH 46 550 151 HOH HOH N . J 5 HOH 47 551 154 HOH HOH N . J 5 HOH 48 552 156 HOH HOH N . J 5 HOH 49 553 157 HOH HOH N . J 5 HOH 50 554 168 HOH HOH N . J 5 HOH 51 555 176 HOH HOH N . J 5 HOH 52 556 179 HOH HOH N . J 5 HOH 53 557 182 HOH HOH N . J 5 HOH 54 558 187 HOH HOH N . J 5 HOH 55 559 189 HOH HOH N . J 5 HOH 56 560 195 HOH HOH N . J 5 HOH 57 561 196 HOH HOH N . J 5 HOH 58 562 200 HOH HOH N . J 5 HOH 59 563 204 HOH HOH N . J 5 HOH 60 564 205 HOH HOH N . J 5 HOH 61 565 207 HOH HOH N . J 5 HOH 62 566 217 HOH HOH N . J 5 HOH 63 567 218 HOH HOH N . J 5 HOH 64 568 225 HOH HOH N . J 5 HOH 65 569 226 HOH HOH N . J 5 HOH 66 570 228 HOH HOH N . J 5 HOH 67 571 229 HOH HOH N . J 5 HOH 68 572 230 HOH HOH N . J 5 HOH 69 573 231 HOH HOH N . J 5 HOH 70 574 232 HOH HOH N . J 5 HOH 71 575 233 HOH HOH N . J 5 HOH 72 576 234 HOH HOH N . J 5 HOH 73 577 238 HOH HOH N . J 5 HOH 74 578 239 HOH HOH N . J 5 HOH 75 579 241 HOH HOH N . K 5 HOH 1 95 1 HOH HOH P . K 5 HOH 2 96 6 HOH HOH P . K 5 HOH 3 97 13 HOH HOH P . K 5 HOH 4 98 14 HOH HOH P . K 5 HOH 5 99 17 HOH HOH P . K 5 HOH 6 100 18 HOH HOH P . K 5 HOH 7 101 21 HOH HOH P . K 5 HOH 8 102 22 HOH HOH P . K 5 HOH 9 103 24 HOH HOH P . K 5 HOH 10 104 26 HOH HOH P . K 5 HOH 11 105 37 HOH HOH P . K 5 HOH 12 106 39 HOH HOH P . K 5 HOH 13 107 40 HOH HOH P . K 5 HOH 14 108 52 HOH HOH P . K 5 HOH 15 109 53 HOH HOH P . K 5 HOH 16 110 54 HOH HOH P . K 5 HOH 17 111 55 HOH HOH P . K 5 HOH 18 112 56 HOH HOH P . K 5 HOH 19 113 57 HOH HOH P . K 5 HOH 20 114 59 HOH HOH P . K 5 HOH 21 115 64 HOH HOH P . K 5 HOH 22 116 65 HOH HOH P . K 5 HOH 23 117 66 HOH HOH P . K 5 HOH 24 118 67 HOH HOH P . K 5 HOH 25 119 68 HOH HOH P . K 5 HOH 26 120 69 HOH HOH P . K 5 HOH 27 121 70 HOH HOH P . K 5 HOH 28 122 71 HOH HOH P . K 5 HOH 29 123 72 HOH HOH P . K 5 HOH 30 124 73 HOH HOH P . K 5 HOH 31 125 74 HOH HOH P . K 5 HOH 32 126 75 HOH HOH P . K 5 HOH 33 127 76 HOH HOH P . K 5 HOH 34 128 77 HOH HOH P . K 5 HOH 35 129 94 HOH HOH P . K 5 HOH 36 130 95 HOH HOH P . K 5 HOH 37 131 97 HOH HOH P . K 5 HOH 38 132 112 HOH HOH P . K 5 HOH 39 133 113 HOH HOH P . K 5 HOH 40 134 114 HOH HOH P . K 5 HOH 41 135 116 HOH HOH P . K 5 HOH 42 136 123 HOH HOH P . K 5 HOH 43 137 131 HOH HOH P . K 5 HOH 44 138 132 HOH HOH P . K 5 HOH 45 139 133 HOH HOH P . K 5 HOH 46 140 134 HOH HOH P . K 5 HOH 47 141 135 HOH HOH P . K 5 HOH 48 142 145 HOH HOH P . K 5 HOH 49 143 146 HOH HOH P . K 5 HOH 50 144 147 HOH HOH P . K 5 HOH 51 145 152 HOH HOH P . K 5 HOH 52 146 155 HOH HOH P . K 5 HOH 53 147 161 HOH HOH P . K 5 HOH 54 148 162 HOH HOH P . K 5 HOH 55 149 163 HOH HOH P . K 5 HOH 56 150 164 HOH HOH P . K 5 HOH 57 151 165 HOH HOH P . K 5 HOH 58 152 166 HOH HOH P . K 5 HOH 59 153 167 HOH HOH P . K 5 HOH 60 154 169 HOH HOH P . K 5 HOH 61 155 170 HOH HOH P . K 5 HOH 62 156 174 HOH HOH P . K 5 HOH 63 157 175 HOH HOH P . K 5 HOH 64 158 180 HOH HOH P . K 5 HOH 65 159 183 HOH HOH P . K 5 HOH 66 160 184 HOH HOH P . K 5 HOH 67 161 185 HOH HOH P . K 5 HOH 68 162 186 HOH HOH P . K 5 HOH 69 163 188 HOH HOH P . K 5 HOH 70 164 193 HOH HOH P . K 5 HOH 71 165 199 HOH HOH P . K 5 HOH 72 166 201 HOH HOH P . K 5 HOH 73 167 208 HOH HOH P . K 5 HOH 74 168 209 HOH HOH P . K 5 HOH 75 169 210 HOH HOH P . K 5 HOH 76 170 211 HOH HOH P . K 5 HOH 77 171 213 HOH HOH P . K 5 HOH 78 172 215 HOH HOH P . K 5 HOH 79 173 235 HOH HOH P . K 5 HOH 80 174 236 HOH HOH P . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SOLVE phasing . ? 1 CNS refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 1DFU _cell.length_a 75.6 _cell.length_b 76.6 _cell.length_c 95.1 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DFU _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 20 # _exptl.entry_id 1DFU _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 58.76 _exptl_crystal.density_Matthews 2.98 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'MPD, POTASSIUM CHLORIDE, MAGNESIUM CHLORIDE, CACODYLATE, pH 6.0, VAPOR DIFFUSION, SITTING DROP at 292K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 KCL ? ? ? 1 2 1 MGCL2 ? ? ? 1 3 1 CACODYLATE ? ? ? 1 4 1 MPD ? ? ? 1 5 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 1998-01-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C _diffrn_source.pdbx_wavelength 0.98 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DFU _reflns.observed_criterion_sigma_I 2.9 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.8 _reflns.number_obs 24727 _reflns.number_all ? _reflns.percent_possible_obs 96.0 _reflns.pdbx_Rmerge_I_obs 0.0480000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 15 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.83 _reflns_shell.percent_possible_all 77.0 _reflns_shell.Rmerge_I_obs 0.3130000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1DFU _refine.ls_number_reflns_obs 21705 _refine.ls_number_reflns_all 25857 _refine.pdbx_ls_sigma_I 2 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20 _refine.ls_d_res_high 1.8 _refine.ls_percent_reflns_obs 83.9 _refine.ls_R_factor_obs 0.2260000 _refine.ls_R_factor_all 0.2090000 _refine.ls_R_factor_R_work 0.2070000 _refine.ls_R_factor_R_free 0.2250000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10 _refine.ls_number_reflns_R_free 2164 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values CNS _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 753 _refine_hist.pdbx_number_atoms_nucleic_acid 819 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 242 _refine_hist.number_atoms_total 1819 _refine_hist.d_res_high 1.8 _refine_hist.d_res_low 20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.01 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1DFU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1DFU _struct.title 'CRYSTAL STRUCTURE OF E.COLI RIBOSOMAL PROTEIN L25 COMPLEXED WITH A 5S RRNA FRAGMENT AT 1.8 A RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DFU _struct_keywords.pdbx_keywords RIBOSOME _struct_keywords.text 'PROTEIN-RNA COMPLEX, RIBOSOME' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 5 ? J N N 5 ? K N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP RL25_ECOLI 3 ? ? P68919 ? 2 PDB 1DFU 1 ? ? 1DFU ? 3 PDB 1DFU 2 ? ? 1DFU ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1DFU P 1 ? 94 ? P68919 1 ? 94 ? 1 94 2 2 1DFU M 1 ? 19 ? 1DFU 91 ? 109 ? 91 109 3 3 1DFU N 1 ? 19 ? 1DFU 68 ? 86 ? 68 86 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY C 13 ? ALA C 23 ? GLY P 13 ALA P 23 1 ? 11 HELX_P HELX_P2 2 HIS C 44 ? GLN C 51 ? HIS P 44 GLN P 51 1 ? 8 HELX_P HELX_P3 3 ALA C 52 ? SER C 58 ? ALA P 52 SER P 58 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A U 5 O4 ? ? ? 1_555 D MG . MG ? ? M U 95 M MG 501 1_555 ? ? ? ? ? ? ? 2.186 ? ? metalc2 metalc ? ? A G 10 OP2 ? ? ? 1_555 E MG . MG ? ? M G 100 M MG 502 1_555 ? ? ? ? ? ? ? 2.115 ? ? metalc3 metalc ? ? A G 12 O6 ? ? ? 1_555 G MG . MG ? ? M G 102 M MG 505 1_555 ? ? ? ? ? ? ? 2.957 ? ? metalc4 metalc ? ? A G 12 N7 ? ? ? 1_555 G MG . MG ? ? M G 102 M MG 505 1_555 ? ? ? ? ? ? ? 2.857 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? M MG 501 M HOH 518 1_555 ? ? ? ? ? ? ? 2.006 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? M MG 501 M HOH 525 1_555 ? ? ? ? ? ? ? 1.847 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? M MG 501 M HOH 529 1_555 ? ? ? ? ? ? ? 2.092 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? M MG 501 N HOH 520 1_555 ? ? ? ? ? ? ? 2.200 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? M MG 501 P HOH 131 1_555 ? ? ? ? ? ? ? 2.627 ? ? metalc10 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? M MG 502 M HOH 510 1_555 ? ? ? ? ? ? ? 1.557 ? ? metalc11 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? M MG 502 M HOH 541 1_555 ? ? ? ? ? ? ? 2.537 ? ? metalc12 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? M MG 502 M HOH 552 1_555 ? ? ? ? ? ? ? 2.140 ? ? metalc13 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? M MG 502 M HOH 571 1_555 ? ? ? ? ? ? ? 2.112 ? ? metalc14 metalc ? ? E MG . MG ? ? ? 1_555 J HOH . O ? ? M MG 502 N HOH 539 1_555 ? ? ? ? ? ? ? 2.663 ? ? metalc15 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? M MG 503 M HOH 550 1_555 ? ? ? ? ? ? ? 1.753 ? ? metalc16 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? M MG 503 M HOH 550 3_554 ? ? ? ? ? ? ? 2.870 ? ? metalc17 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? M MG 503 M HOH 569 1_555 ? ? ? ? ? ? ? 2.323 ? ? metalc18 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? M MG 503 M HOH 583 1_555 ? ? ? ? ? ? ? 2.187 ? ? metalc19 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? M MG 503 M HOH 584 3_554 ? ? ? ? ? ? ? 2.233 ? ? metalc20 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? M MG 503 M HOH 586 1_555 ? ? ? ? ? ? ? 2.355 ? ? metalc21 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? M MG 505 M HOH 507 1_555 ? ? ? ? ? ? ? 3.087 ? ? metalc22 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? M MG 505 M HOH 510 1_555 ? ? ? ? ? ? ? 2.788 ? ? metalc23 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? M MG 505 M HOH 527 1_555 ? ? ? ? ? ? ? 2.455 ? ? metalc24 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? M MG 505 M HOH 535 1_555 ? ? ? ? ? ? ? 2.024 ? ? metalc25 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? M MG 505 M HOH 552 1_555 ? ? ? ? ? ? ? 1.997 ? ? metalc26 metalc ? ? I HOH . O ? ? ? 1_555 H MG . MG ? ? M HOH 536 N MG 504 1_555 ? ? ? ? ? ? ? 1.929 ? ? metalc27 metalc ? ? H MG . MG ? ? ? 1_555 J HOH . O ? ? N MG 504 N HOH 507 1_555 ? ? ? ? ? ? ? 1.969 ? ? metalc28 metalc ? ? H MG . MG ? ? ? 1_555 J HOH . O ? ? N MG 504 N HOH 527 1_555 ? ? ? ? ? ? ? 2.312 ? ? metalc29 metalc ? ? H MG . MG ? ? ? 1_555 J HOH . O ? ? N MG 504 N HOH 528 1_555 ? ? ? ? ? ? ? 2.342 ? ? metalc30 metalc ? ? H MG . MG ? ? ? 1_555 J HOH . O ? ? N MG 504 N HOH 530 1_555 ? ? ? ? ? ? ? 2.339 ? ? metalc31 metalc ? ? H MG . MG ? ? ? 1_555 J HOH . O ? ? N MG 504 N HOH 568 1_555 ? ? ? ? ? ? ? 1.948 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 18 N1 ? ? M C 91 N G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 18 O6 ? ? M C 91 N G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 18 N2 ? ? M C 91 N G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 17 N1 ? ? M C 92 N G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 17 O6 ? ? M C 92 N G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 17 N2 ? ? M C 92 N G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 16 N1 ? ? M C 93 N G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 16 O6 ? ? M C 93 N G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 16 N2 ? ? M C 93 N G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 B U 15 N3 ? ? M A 94 N U 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 B U 15 O4 ? ? M A 94 N U 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 B G 14 O6 ? ? M U 95 N G 81 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A U 5 O2 ? ? ? 1_555 B G 14 N1 ? ? M U 95 N G 81 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 B U 13 O2 ? ? M G 96 N U 80 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? A G 6 O6 ? ? ? 1_555 B U 13 N3 ? ? M G 96 N U 80 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog16 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 12 N1 ? ? M C 97 N G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 12 O6 ? ? M C 97 N G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 12 N2 ? ? M C 97 N G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 N2 ? ? ? 1_555 B A 11 N7 ? ? M G 98 N A 78 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog20 hydrog ? ? A G 8 N3 ? ? ? 1_555 B A 11 N6 ? ? M G 98 N A 78 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog21 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 10 O2 ? ? M A 99 N U 77 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog22 hydrog ? ? A A 9 N7 ? ? ? 1_555 B U 10 N3 ? ? M A 99 N U 77 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog23 hydrog ? ? A G 10 O6 ? ? ? 1_555 B G 9 N1 ? ? M G 100 N G 76 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog24 hydrog ? ? A A 11 N6 ? ? ? 1_555 B G 8 O6 ? ? M A 101 N G 75 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog25 hydrog ? ? A G 12 N1 ? ? ? 1_555 B U 7 O4 ? ? M G 102 N U 74 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog26 hydrog ? ? A U 13 N3 ? ? ? 1_555 B A 6 N7 ? ? M U 103 N A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog27 hydrog ? ? A U 13 O2 ? ? ? 1_555 B A 6 N6 ? ? M U 103 N A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog28 hydrog ? ? A A 14 N6 ? ? ? 1_555 B G 5 N3 ? ? M A 104 N G 72 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog29 hydrog ? ? A A 14 N7 ? ? ? 1_555 B G 5 N2 ? ? M A 104 N G 72 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog30 hydrog ? ? A G 15 N1 ? ? ? 1_555 B C 4 N3 ? ? M G 105 N C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 N2 ? ? ? 1_555 B C 4 O2 ? ? M G 105 N C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 15 O6 ? ? ? 1_555 B C 4 N4 ? ? M G 105 N C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 16 N1 ? ? ? 1_555 B C 3 N3 ? ? M G 106 N C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 16 N2 ? ? ? 1_555 B C 3 O2 ? ? M G 106 N C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 16 O6 ? ? ? 1_555 B C 3 N4 ? ? M G 106 N C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? A U 5 ? M U 95 ? 1_555 MG ? D MG . ? M MG 501 ? 1_555 O ? I HOH . ? M HOH 518 ? 1_555 89.7 ? 2 O4 ? A U 5 ? M U 95 ? 1_555 MG ? D MG . ? M MG 501 ? 1_555 O ? I HOH . ? M HOH 525 ? 1_555 86.0 ? 3 O ? I HOH . ? M HOH 518 ? 1_555 MG ? D MG . ? M MG 501 ? 1_555 O ? I HOH . ? M HOH 525 ? 1_555 100.3 ? 4 O4 ? A U 5 ? M U 95 ? 1_555 MG ? D MG . ? M MG 501 ? 1_555 O ? I HOH . ? M HOH 529 ? 1_555 171.0 ? 5 O ? I HOH . ? M HOH 518 ? 1_555 MG ? D MG . ? M MG 501 ? 1_555 O ? I HOH . ? M HOH 529 ? 1_555 94.0 ? 6 O ? I HOH . ? M HOH 525 ? 1_555 MG ? D MG . ? M MG 501 ? 1_555 O ? I HOH . ? M HOH 529 ? 1_555 101.3 ? 7 O4 ? A U 5 ? M U 95 ? 1_555 MG ? D MG . ? M MG 501 ? 1_555 O ? J HOH . ? N HOH 520 ? 1_555 87.8 ? 8 O ? I HOH . ? M HOH 518 ? 1_555 MG ? D MG . ? M MG 501 ? 1_555 O ? J HOH . ? N HOH 520 ? 1_555 165.1 ? 9 O ? I HOH . ? M HOH 525 ? 1_555 MG ? D MG . ? M MG 501 ? 1_555 O ? J HOH . ? N HOH 520 ? 1_555 94.1 ? 10 O ? I HOH . ? M HOH 529 ? 1_555 MG ? D MG . ? M MG 501 ? 1_555 O ? J HOH . ? N HOH 520 ? 1_555 86.5 ? 11 O4 ? A U 5 ? M U 95 ? 1_555 MG ? D MG . ? M MG 501 ? 1_555 O ? K HOH . ? P HOH 131 ? 1_555 83.9 ? 12 O ? I HOH . ? M HOH 518 ? 1_555 MG ? D MG . ? M MG 501 ? 1_555 O ? K HOH . ? P HOH 131 ? 1_555 87.3 ? 13 O ? I HOH . ? M HOH 525 ? 1_555 MG ? D MG . ? M MG 501 ? 1_555 O ? K HOH . ? P HOH 131 ? 1_555 167.3 ? 14 O ? I HOH . ? M HOH 529 ? 1_555 MG ? D MG . ? M MG 501 ? 1_555 O ? K HOH . ? P HOH 131 ? 1_555 88.1 ? 15 O ? J HOH . ? N HOH 520 ? 1_555 MG ? D MG . ? M MG 501 ? 1_555 O ? K HOH . ? P HOH 131 ? 1_555 77.9 ? 16 OP2 ? A G 10 ? M G 100 ? 1_555 MG ? E MG . ? M MG 502 ? 1_555 O ? I HOH . ? M HOH 510 ? 1_555 97.4 ? 17 OP2 ? A G 10 ? M G 100 ? 1_555 MG ? E MG . ? M MG 502 ? 1_555 O ? I HOH . ? M HOH 541 ? 1_555 91.9 ? 18 O ? I HOH . ? M HOH 510 ? 1_555 MG ? E MG . ? M MG 502 ? 1_555 O ? I HOH . ? M HOH 541 ? 1_555 106.5 ? 19 OP2 ? A G 10 ? M G 100 ? 1_555 MG ? E MG . ? M MG 502 ? 1_555 O ? I HOH . ? M HOH 552 ? 1_555 173.8 ? 20 O ? I HOH . ? M HOH 510 ? 1_555 MG ? E MG . ? M MG 502 ? 1_555 O ? I HOH . ? M HOH 552 ? 1_555 86.8 ? 21 O ? I HOH . ? M HOH 541 ? 1_555 MG ? E MG . ? M MG 502 ? 1_555 O ? I HOH . ? M HOH 552 ? 1_555 82.5 ? 22 OP2 ? A G 10 ? M G 100 ? 1_555 MG ? E MG . ? M MG 502 ? 1_555 O ? I HOH . ? M HOH 571 ? 1_555 77.6 ? 23 O ? I HOH . ? M HOH 510 ? 1_555 MG ? E MG . ? M MG 502 ? 1_555 O ? I HOH . ? M HOH 571 ? 1_555 168.8 ? 24 O ? I HOH . ? M HOH 541 ? 1_555 MG ? E MG . ? M MG 502 ? 1_555 O ? I HOH . ? M HOH 571 ? 1_555 83.9 ? 25 O ? I HOH . ? M HOH 552 ? 1_555 MG ? E MG . ? M MG 502 ? 1_555 O ? I HOH . ? M HOH 571 ? 1_555 99.1 ? 26 OP2 ? A G 10 ? M G 100 ? 1_555 MG ? E MG . ? M MG 502 ? 1_555 O ? J HOH . ? N HOH 539 ? 1_555 96.2 ? 27 O ? I HOH . ? M HOH 510 ? 1_555 MG ? E MG . ? M MG 502 ? 1_555 O ? J HOH . ? N HOH 539 ? 1_555 98.1 ? 28 O ? I HOH . ? M HOH 541 ? 1_555 MG ? E MG . ? M MG 502 ? 1_555 O ? J HOH . ? N HOH 539 ? 1_555 152.9 ? 29 O ? I HOH . ? M HOH 552 ? 1_555 MG ? E MG . ? M MG 502 ? 1_555 O ? J HOH . ? N HOH 539 ? 1_555 87.8 ? 30 O ? I HOH . ? M HOH 571 ? 1_555 MG ? E MG . ? M MG 502 ? 1_555 O ? J HOH . ? N HOH 539 ? 1_555 72.7 ? 31 O6 ? A G 12 ? M G 102 ? 1_555 MG ? G MG . ? M MG 505 ? 1_555 N7 ? A G 12 ? M G 102 ? 1_555 64.4 ? 32 O6 ? A G 12 ? M G 102 ? 1_555 MG ? G MG . ? M MG 505 ? 1_555 O ? I HOH . ? M HOH 507 ? 1_555 118.6 ? 33 N7 ? A G 12 ? M G 102 ? 1_555 MG ? G MG . ? M MG 505 ? 1_555 O ? I HOH . ? M HOH 507 ? 1_555 146.8 ? 34 O6 ? A G 12 ? M G 102 ? 1_555 MG ? G MG . ? M MG 505 ? 1_555 O ? I HOH . ? M HOH 510 ? 1_555 91.1 ? 35 N7 ? A G 12 ? M G 102 ? 1_555 MG ? G MG . ? M MG 505 ? 1_555 O ? I HOH . ? M HOH 510 ? 1_555 94.9 ? 36 O ? I HOH . ? M HOH 507 ? 1_555 MG ? G MG . ? M MG 505 ? 1_555 O ? I HOH . ? M HOH 510 ? 1_555 117.5 ? 37 O6 ? A G 12 ? M G 102 ? 1_555 MG ? G MG . ? M MG 505 ? 1_555 O ? I HOH . ? M HOH 527 ? 1_555 90.9 ? 38 N7 ? A G 12 ? M G 102 ? 1_555 MG ? G MG . ? M MG 505 ? 1_555 O ? I HOH . ? M HOH 527 ? 1_555 91.9 ? 39 O ? I HOH . ? M HOH 507 ? 1_555 MG ? G MG . ? M MG 505 ? 1_555 O ? I HOH . ? M HOH 527 ? 1_555 55.9 ? 40 O ? I HOH . ? M HOH 510 ? 1_555 MG ? G MG . ? M MG 505 ? 1_555 O ? I HOH . ? M HOH 527 ? 1_555 173.1 ? 41 O6 ? A G 12 ? M G 102 ? 1_555 MG ? G MG . ? M MG 505 ? 1_555 O ? I HOH . ? M HOH 535 ? 1_555 134.7 ? 42 N7 ? A G 12 ? M G 102 ? 1_555 MG ? G MG . ? M MG 505 ? 1_555 O ? I HOH . ? M HOH 535 ? 1_555 74.1 ? 43 O ? I HOH . ? M HOH 507 ? 1_555 MG ? G MG . ? M MG 505 ? 1_555 O ? I HOH . ? M HOH 535 ? 1_555 106.0 ? 44 O ? I HOH . ? M HOH 510 ? 1_555 MG ? G MG . ? M MG 505 ? 1_555 O ? I HOH . ? M HOH 535 ? 1_555 74.6 ? 45 O ? I HOH . ? M HOH 527 ? 1_555 MG ? G MG . ? M MG 505 ? 1_555 O ? I HOH . ? M HOH 535 ? 1_555 108.4 ? 46 O6 ? A G 12 ? M G 102 ? 1_555 MG ? G MG . ? M MG 505 ? 1_555 O ? I HOH . ? M HOH 552 ? 1_555 60.6 ? 47 N7 ? A G 12 ? M G 102 ? 1_555 MG ? G MG . ? M MG 505 ? 1_555 O ? I HOH . ? M HOH 552 ? 1_555 118.8 ? 48 O ? I HOH . ? M HOH 507 ? 1_555 MG ? G MG . ? M MG 505 ? 1_555 O ? I HOH . ? M HOH 552 ? 1_555 84.9 ? 49 O ? I HOH . ? M HOH 510 ? 1_555 MG ? G MG . ? M MG 505 ? 1_555 O ? I HOH . ? M HOH 552 ? 1_555 62.6 ? 50 O ? I HOH . ? M HOH 527 ? 1_555 MG ? G MG . ? M MG 505 ? 1_555 O ? I HOH . ? M HOH 552 ? 1_555 113.0 ? 51 O ? I HOH . ? M HOH 535 ? 1_555 MG ? G MG . ? M MG 505 ? 1_555 O ? I HOH . ? M HOH 552 ? 1_555 135.6 ? 52 O ? I HOH . ? M HOH 550 ? 1_555 MG ? F MG . ? M MG 503 ? 1_555 O ? I HOH . ? M HOH 550 ? 3_554 83.6 ? 53 O ? I HOH . ? M HOH 550 ? 1_555 MG ? F MG . ? M MG 503 ? 1_555 O ? I HOH . ? M HOH 569 ? 1_555 92.8 ? 54 O ? I HOH . ? M HOH 550 ? 3_554 MG ? F MG . ? M MG 503 ? 1_555 O ? I HOH . ? M HOH 569 ? 1_555 168.8 ? 55 O ? I HOH . ? M HOH 550 ? 1_555 MG ? F MG . ? M MG 503 ? 1_555 O ? I HOH . ? M HOH 583 ? 1_555 83.7 ? 56 O ? I HOH . ? M HOH 550 ? 3_554 MG ? F MG . ? M MG 503 ? 1_555 O ? I HOH . ? M HOH 583 ? 1_555 88.0 ? 57 O ? I HOH . ? M HOH 569 ? 1_555 MG ? F MG . ? M MG 503 ? 1_555 O ? I HOH . ? M HOH 583 ? 1_555 81.1 ? 58 O ? I HOH . ? M HOH 550 ? 1_555 MG ? F MG . ? M MG 503 ? 1_555 O ? I HOH . ? M HOH 584 ? 3_554 159.2 ? 59 O ? I HOH . ? M HOH 550 ? 3_554 MG ? F MG . ? M MG 503 ? 1_555 O ? I HOH . ? M HOH 584 ? 3_554 78.5 ? 60 O ? I HOH . ? M HOH 569 ? 1_555 MG ? F MG . ? M MG 503 ? 1_555 O ? I HOH . ? M HOH 584 ? 3_554 102.8 ? 61 O ? I HOH . ? M HOH 583 ? 1_555 MG ? F MG . ? M MG 503 ? 1_555 O ? I HOH . ? M HOH 584 ? 3_554 85.3 ? 62 O ? I HOH . ? M HOH 550 ? 1_555 MG ? F MG . ? M MG 503 ? 1_555 O ? I HOH . ? M HOH 586 ? 1_555 69.3 ? 63 O ? I HOH . ? M HOH 550 ? 3_554 MG ? F MG . ? M MG 503 ? 1_555 O ? I HOH . ? M HOH 586 ? 1_555 101.6 ? 64 O ? I HOH . ? M HOH 569 ? 1_555 MG ? F MG . ? M MG 503 ? 1_555 O ? I HOH . ? M HOH 586 ? 1_555 86.9 ? 65 O ? I HOH . ? M HOH 583 ? 1_555 MG ? F MG . ? M MG 503 ? 1_555 O ? I HOH . ? M HOH 586 ? 1_555 149.9 ? 66 O ? I HOH . ? M HOH 584 ? 3_554 MG ? F MG . ? M MG 503 ? 1_555 O ? I HOH . ? M HOH 586 ? 1_555 124.5 ? 67 O ? I HOH . ? M HOH 536 ? 1_555 MG ? H MG . ? N MG 504 ? 1_555 O ? J HOH . ? N HOH 507 ? 1_555 145.6 ? 68 O ? I HOH . ? M HOH 536 ? 1_555 MG ? H MG . ? N MG 504 ? 1_555 O ? J HOH . ? N HOH 527 ? 1_555 83.4 ? 69 O ? J HOH . ? N HOH 507 ? 1_555 MG ? H MG . ? N MG 504 ? 1_555 O ? J HOH . ? N HOH 527 ? 1_555 74.4 ? 70 O ? I HOH . ? M HOH 536 ? 1_555 MG ? H MG . ? N MG 504 ? 1_555 O ? J HOH . ? N HOH 528 ? 1_555 86.6 ? 71 O ? J HOH . ? N HOH 507 ? 1_555 MG ? H MG . ? N MG 504 ? 1_555 O ? J HOH . ? N HOH 528 ? 1_555 117.1 ? 72 O ? J HOH . ? N HOH 527 ? 1_555 MG ? H MG . ? N MG 504 ? 1_555 O ? J HOH . ? N HOH 528 ? 1_555 168.5 ? 73 O ? I HOH . ? M HOH 536 ? 1_555 MG ? H MG . ? N MG 504 ? 1_555 O ? J HOH . ? N HOH 530 ? 1_555 105.3 ? 74 O ? J HOH . ? N HOH 507 ? 1_555 MG ? H MG . ? N MG 504 ? 1_555 O ? J HOH . ? N HOH 530 ? 1_555 62.0 ? 75 O ? J HOH . ? N HOH 527 ? 1_555 MG ? H MG . ? N MG 504 ? 1_555 O ? J HOH . ? N HOH 530 ? 1_555 113.0 ? 76 O ? J HOH . ? N HOH 528 ? 1_555 MG ? H MG . ? N MG 504 ? 1_555 O ? J HOH . ? N HOH 530 ? 1_555 75.2 ? 77 O ? I HOH . ? M HOH 536 ? 1_555 MG ? H MG . ? N MG 504 ? 1_555 O ? J HOH . ? N HOH 568 ? 1_555 95.9 ? 78 O ? J HOH . ? N HOH 507 ? 1_555 MG ? H MG . ? N MG 504 ? 1_555 O ? J HOH . ? N HOH 568 ? 1_555 106.4 ? 79 O ? J HOH . ? N HOH 527 ? 1_555 MG ? H MG . ? N MG 504 ? 1_555 O ? J HOH . ? N HOH 568 ? 1_555 82.0 ? 80 O ? J HOH . ? N HOH 528 ? 1_555 MG ? H MG . ? N MG 504 ? 1_555 O ? J HOH . ? N HOH 568 ? 1_555 93.4 ? 81 O ? J HOH . ? N HOH 530 ? 1_555 MG ? H MG . ? N MG 504 ? 1_555 O ? J HOH . ? N HOH 568 ? 1_555 155.1 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR C 3 ? ASN C 5 ? THR P 3 ASN P 5 A 2 THR C 62 ? VAL C 65 ? THR P 62 VAL P 65 A 3 LYS C 68 ? GLU C 69 ? LYS P 68 GLU P 69 B 1 GLU C 7 ? VAL C 8 ? GLU P 7 VAL P 8 B 2 LEU C 38 ? ASP C 43 ? LEU P 38 ASP P 43 B 3 LYS C 25 ? TYR C 31 ? LYS P 25 TYR P 31 B 4 LEU C 86 ? ARG C 93 ? LEU P 86 ARG P 93 B 5 VAL C 72 ? ARG C 79 ? VAL P 72 ARG P 79 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE C 4 ? N ILE P 4 O THR C 62 ? O THR P 62 A 2 3 N VAL C 65 ? N VAL P 65 O LYS C 68 ? O LYS P 68 B 1 2 O GLU C 7 ? O GLU P 7 N GLU C 41 ? N GLU P 41 B 2 3 N LEU C 42 ? N LEU P 42 O PHE C 26 ? O PHE P 26 B 3 4 N ILE C 29 ? N ILE P 29 O ILE C 89 ? O ILE P 89 B 4 5 N VAL C 92 ? N VAL P 92 O LYS C 73 ? O LYS P 73 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software M MG 501 ? 6 'BINDING SITE FOR RESIDUE MG M 501' AC2 Software M MG 502 ? 7 'BINDING SITE FOR RESIDUE MG M 502' AC3 Software M MG 503 ? 6 'BINDING SITE FOR RESIDUE MG M 503' AC4 Software N MG 504 ? 6 'BINDING SITE FOR RESIDUE MG N 504' AC5 Software M MG 505 ? 7 'BINDING SITE FOR RESIDUE MG M 505' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 U A 5 ? U M 95 . ? 1_555 ? 2 AC1 6 HOH I . ? HOH M 518 . ? 1_555 ? 3 AC1 6 HOH I . ? HOH M 525 . ? 1_555 ? 4 AC1 6 HOH I . ? HOH M 529 . ? 1_555 ? 5 AC1 6 HOH J . ? HOH N 520 . ? 1_555 ? 6 AC1 6 HOH K . ? HOH P 131 . ? 1_555 ? 7 AC2 7 G A 10 ? G M 100 . ? 1_555 ? 8 AC2 7 MG G . ? MG M 505 . ? 1_555 ? 9 AC2 7 HOH I . ? HOH M 510 . ? 1_555 ? 10 AC2 7 HOH I . ? HOH M 541 . ? 1_555 ? 11 AC2 7 HOH I . ? HOH M 552 . ? 1_555 ? 12 AC2 7 HOH I . ? HOH M 571 . ? 1_555 ? 13 AC2 7 HOH J . ? HOH N 539 . ? 1_555 ? 14 AC3 6 HOH I . ? HOH M 550 . ? 3_554 ? 15 AC3 6 HOH I . ? HOH M 550 . ? 1_555 ? 16 AC3 6 HOH I . ? HOH M 569 . ? 1_555 ? 17 AC3 6 HOH I . ? HOH M 583 . ? 1_555 ? 18 AC3 6 HOH I . ? HOH M 584 . ? 3_554 ? 19 AC3 6 HOH I . ? HOH M 586 . ? 1_555 ? 20 AC4 6 HOH I . ? HOH M 536 . ? 1_555 ? 21 AC4 6 HOH J . ? HOH N 507 . ? 1_555 ? 22 AC4 6 HOH J . ? HOH N 527 . ? 1_555 ? 23 AC4 6 HOH J . ? HOH N 528 . ? 1_555 ? 24 AC4 6 HOH J . ? HOH N 530 . ? 1_555 ? 25 AC4 6 HOH J . ? HOH N 568 . ? 1_555 ? 26 AC5 7 G A 12 ? G M 102 . ? 1_555 ? 27 AC5 7 MG E . ? MG M 502 . ? 1_555 ? 28 AC5 7 HOH I . ? HOH M 507 . ? 1_555 ? 29 AC5 7 HOH I . ? HOH M 510 . ? 1_555 ? 30 AC5 7 HOH I . ? HOH M 527 . ? 1_555 ? 31 AC5 7 HOH I . ? HOH M 535 . ? 1_555 ? 32 AC5 7 HOH I . ? HOH M 552 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O P HOH 118 ? ? O P HOH 151 ? ? 1.51 2 1 O N HOH 525 ? ? O N HOH 564 ? ? 1.75 3 1 O N HOH 522 ? ? O N HOH 557 ? ? 1.77 4 1 "O5'" M C 97 ? ? O M HOH 567 ? ? 1.80 5 1 "C3'" M C 97 ? ? O M HOH 567 ? ? 1.81 6 1 O P HOH 97 ? ? O P HOH 129 ? ? 1.90 7 1 "C5'" M C 97 ? ? O M HOH 567 ? ? 1.91 8 1 "C4'" M C 97 ? ? O M HOH 567 ? ? 1.97 9 1 O M HOH 513 ? ? O P HOH 168 ? ? 2.02 10 1 O M HOH 526 ? ? O N HOH 532 ? ? 2.09 11 1 O P VAL 65 ? ? O P HOH 161 ? ? 2.12 12 1 O M HOH 543 ? ? O M HOH 553 ? ? 2.13 13 1 O M HOH 511 ? ? O M HOH 591 ? ? 2.15 14 1 OP2 M C 92 ? ? O M HOH 589 ? ? 2.18 15 1 N P LYS 68 ? ? O P HOH 161 ? ? 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP P 66 ? ? 57.68 -113.27 2 1 LYS P 71 ? ? 67.39 104.99 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 G OP3 O N N 146 G P P N N 147 G OP1 O N N 148 G OP2 O N N 149 G "O5'" O N N 150 G "C5'" C N N 151 G "C4'" C N R 152 G "O4'" O N N 153 G "C3'" C N S 154 G "O3'" O N N 155 G "C2'" C N R 156 G "O2'" O N N 157 G "C1'" C N R 158 G N9 N Y N 159 G C8 C Y N 160 G N7 N Y N 161 G C5 C Y N 162 G C6 C N N 163 G O6 O N N 164 G N1 N N N 165 G C2 C N N 166 G N2 N N N 167 G N3 N N N 168 G C4 C Y N 169 G HOP3 H N N 170 G HOP2 H N N 171 G "H5'" H N N 172 G "H5''" H N N 173 G "H4'" H N N 174 G "H3'" H N N 175 G "HO3'" H N N 176 G "H2'" H N N 177 G "HO2'" H N N 178 G "H1'" H N N 179 G H8 H N N 180 G H1 H N N 181 G H21 H N N 182 G H22 H N N 183 GLN N N N N 184 GLN CA C N S 185 GLN C C N N 186 GLN O O N N 187 GLN CB C N N 188 GLN CG C N N 189 GLN CD C N N 190 GLN OE1 O N N 191 GLN NE2 N N N 192 GLN OXT O N N 193 GLN H H N N 194 GLN H2 H N N 195 GLN HA H N N 196 GLN HB2 H N N 197 GLN HB3 H N N 198 GLN HG2 H N N 199 GLN HG3 H N N 200 GLN HE21 H N N 201 GLN HE22 H N N 202 GLN HXT H N N 203 GLU N N N N 204 GLU CA C N S 205 GLU C C N N 206 GLU O O N N 207 GLU CB C N N 208 GLU CG C N N 209 GLU CD C N N 210 GLU OE1 O N N 211 GLU OE2 O N N 212 GLU OXT O N N 213 GLU H H N N 214 GLU H2 H N N 215 GLU HA H N N 216 GLU HB2 H N N 217 GLU HB3 H N N 218 GLU HG2 H N N 219 GLU HG3 H N N 220 GLU HE2 H N N 221 GLU HXT H N N 222 GLY N N N N 223 GLY CA C N N 224 GLY C C N N 225 GLY O O N N 226 GLY OXT O N N 227 GLY H H N N 228 GLY H2 H N N 229 GLY HA2 H N N 230 GLY HA3 H N N 231 GLY HXT H N N 232 HIS N N N N 233 HIS CA C N S 234 HIS C C N N 235 HIS O O N N 236 HIS CB C N N 237 HIS CG C Y N 238 HIS ND1 N Y N 239 HIS CD2 C Y N 240 HIS CE1 C Y N 241 HIS NE2 N Y N 242 HIS OXT O N N 243 HIS H H N N 244 HIS H2 H N N 245 HIS HA H N N 246 HIS HB2 H N N 247 HIS HB3 H N N 248 HIS HD1 H N N 249 HIS HD2 H N N 250 HIS HE1 H N N 251 HIS HE2 H N N 252 HIS HXT H N N 253 HOH O O N N 254 HOH H1 H N N 255 HOH H2 H N N 256 ILE N N N N 257 ILE CA C N S 258 ILE C C N N 259 ILE O O N N 260 ILE CB C N S 261 ILE CG1 C N N 262 ILE CG2 C N N 263 ILE CD1 C N N 264 ILE OXT O N N 265 ILE H H N N 266 ILE H2 H N N 267 ILE HA H N N 268 ILE HB H N N 269 ILE HG12 H N N 270 ILE HG13 H N N 271 ILE HG21 H N N 272 ILE HG22 H N N 273 ILE HG23 H N N 274 ILE HD11 H N N 275 ILE HD12 H N N 276 ILE HD13 H N N 277 ILE HXT H N N 278 LEU N N N N 279 LEU CA C N S 280 LEU C C N N 281 LEU O O N N 282 LEU CB C N N 283 LEU CG C N N 284 LEU CD1 C N N 285 LEU CD2 C N N 286 LEU OXT O N N 287 LEU H H N N 288 LEU H2 H N N 289 LEU HA H N N 290 LEU HB2 H N N 291 LEU HB3 H N N 292 LEU HG H N N 293 LEU HD11 H N N 294 LEU HD12 H N N 295 LEU HD13 H N N 296 LEU HD21 H N N 297 LEU HD22 H N N 298 LEU HD23 H N N 299 LEU HXT H N N 300 LYS N N N N 301 LYS CA C N S 302 LYS C C N N 303 LYS O O N N 304 LYS CB C N N 305 LYS CG C N N 306 LYS CD C N N 307 LYS CE C N N 308 LYS NZ N N N 309 LYS OXT O N N 310 LYS H H N N 311 LYS H2 H N N 312 LYS HA H N N 313 LYS HB2 H N N 314 LYS HB3 H N N 315 LYS HG2 H N N 316 LYS HG3 H N N 317 LYS HD2 H N N 318 LYS HD3 H N N 319 LYS HE2 H N N 320 LYS HE3 H N N 321 LYS HZ1 H N N 322 LYS HZ2 H N N 323 LYS HZ3 H N N 324 LYS HXT H N N 325 MET N N N N 326 MET CA C N S 327 MET C C N N 328 MET O O N N 329 MET CB C N N 330 MET CG C N N 331 MET SD S N N 332 MET CE C N N 333 MET OXT O N N 334 MET H H N N 335 MET H2 H N N 336 MET HA H N N 337 MET HB2 H N N 338 MET HB3 H N N 339 MET HG2 H N N 340 MET HG3 H N N 341 MET HE1 H N N 342 MET HE2 H N N 343 MET HE3 H N N 344 MET HXT H N N 345 MG MG MG N N 346 PHE N N N N 347 PHE CA C N S 348 PHE C C N N 349 PHE O O N N 350 PHE CB C N N 351 PHE CG C Y N 352 PHE CD1 C Y N 353 PHE CD2 C Y N 354 PHE CE1 C Y N 355 PHE CE2 C Y N 356 PHE CZ C Y N 357 PHE OXT O N N 358 PHE H H N N 359 PHE H2 H N N 360 PHE HA H N N 361 PHE HB2 H N N 362 PHE HB3 H N N 363 PHE HD1 H N N 364 PHE HD2 H N N 365 PHE HE1 H N N 366 PHE HE2 H N N 367 PHE HZ H N N 368 PHE HXT H N N 369 PRO N N N N 370 PRO CA C N S 371 PRO C C N N 372 PRO O O N N 373 PRO CB C N N 374 PRO CG C N N 375 PRO CD C N N 376 PRO OXT O N N 377 PRO H H N N 378 PRO HA H N N 379 PRO HB2 H N N 380 PRO HB3 H N N 381 PRO HG2 H N N 382 PRO HG3 H N N 383 PRO HD2 H N N 384 PRO HD3 H N N 385 PRO HXT H N N 386 SER N N N N 387 SER CA C N S 388 SER C C N N 389 SER O O N N 390 SER CB C N N 391 SER OG O N N 392 SER OXT O N N 393 SER H H N N 394 SER H2 H N N 395 SER HA H N N 396 SER HB2 H N N 397 SER HB3 H N N 398 SER HG H N N 399 SER HXT H N N 400 THR N N N N 401 THR CA C N S 402 THR C C N N 403 THR O O N N 404 THR CB C N R 405 THR OG1 O N N 406 THR CG2 C N N 407 THR OXT O N N 408 THR H H N N 409 THR H2 H N N 410 THR HA H N N 411 THR HB H N N 412 THR HG1 H N N 413 THR HG21 H N N 414 THR HG22 H N N 415 THR HG23 H N N 416 THR HXT H N N 417 TYR N N N N 418 TYR CA C N S 419 TYR C C N N 420 TYR O O N N 421 TYR CB C N N 422 TYR CG C Y N 423 TYR CD1 C Y N 424 TYR CD2 C Y N 425 TYR CE1 C Y N 426 TYR CE2 C Y N 427 TYR CZ C Y N 428 TYR OH O N N 429 TYR OXT O N N 430 TYR H H N N 431 TYR H2 H N N 432 TYR HA H N N 433 TYR HB2 H N N 434 TYR HB3 H N N 435 TYR HD1 H N N 436 TYR HD2 H N N 437 TYR HE1 H N N 438 TYR HE2 H N N 439 TYR HH H N N 440 TYR HXT H N N 441 U OP3 O N N 442 U P P N N 443 U OP1 O N N 444 U OP2 O N N 445 U "O5'" O N N 446 U "C5'" C N N 447 U "C4'" C N R 448 U "O4'" O N N 449 U "C3'" C N S 450 U "O3'" O N N 451 U "C2'" C N R 452 U "O2'" O N N 453 U "C1'" C N R 454 U N1 N N N 455 U C2 C N N 456 U O2 O N N 457 U N3 N N N 458 U C4 C N N 459 U O4 O N N 460 U C5 C N N 461 U C6 C N N 462 U HOP3 H N N 463 U HOP2 H N N 464 U "H5'" H N N 465 U "H5''" H N N 466 U "H4'" H N N 467 U "H3'" H N N 468 U "HO3'" H N N 469 U "H2'" H N N 470 U "HO2'" H N N 471 U "H1'" H N N 472 U H3 H N N 473 U H5 H N N 474 U H6 H N N 475 VAL N N N N 476 VAL CA C N S 477 VAL C C N N 478 VAL O O N N 479 VAL CB C N N 480 VAL CG1 C N N 481 VAL CG2 C N N 482 VAL OXT O N N 483 VAL H H N N 484 VAL H2 H N N 485 VAL HA H N N 486 VAL HB H N N 487 VAL HG11 H N N 488 VAL HG12 H N N 489 VAL HG13 H N N 490 VAL HG21 H N N 491 VAL HG22 H N N 492 VAL HG23 H N N 493 VAL HXT H N N 494 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 G OP3 P sing N N 145 G OP3 HOP3 sing N N 146 G P OP1 doub N N 147 G P OP2 sing N N 148 G P "O5'" sing N N 149 G OP2 HOP2 sing N N 150 G "O5'" "C5'" sing N N 151 G "C5'" "C4'" sing N N 152 G "C5'" "H5'" sing N N 153 G "C5'" "H5''" sing N N 154 G "C4'" "O4'" sing N N 155 G "C4'" "C3'" sing N N 156 G "C4'" "H4'" sing N N 157 G "O4'" "C1'" sing N N 158 G "C3'" "O3'" sing N N 159 G "C3'" "C2'" sing N N 160 G "C3'" "H3'" sing N N 161 G "O3'" "HO3'" sing N N 162 G "C2'" "O2'" sing N N 163 G "C2'" "C1'" sing N N 164 G "C2'" "H2'" sing N N 165 G "O2'" "HO2'" sing N N 166 G "C1'" N9 sing N N 167 G "C1'" "H1'" sing N N 168 G N9 C8 sing Y N 169 G N9 C4 sing Y N 170 G C8 N7 doub Y N 171 G C8 H8 sing N N 172 G N7 C5 sing Y N 173 G C5 C6 sing N N 174 G C5 C4 doub Y N 175 G C6 O6 doub N N 176 G C6 N1 sing N N 177 G N1 C2 sing N N 178 G N1 H1 sing N N 179 G C2 N2 sing N N 180 G C2 N3 doub N N 181 G N2 H21 sing N N 182 G N2 H22 sing N N 183 G N3 C4 sing N N 184 GLN N CA sing N N 185 GLN N H sing N N 186 GLN N H2 sing N N 187 GLN CA C sing N N 188 GLN CA CB sing N N 189 GLN CA HA sing N N 190 GLN C O doub N N 191 GLN C OXT sing N N 192 GLN CB CG sing N N 193 GLN CB HB2 sing N N 194 GLN CB HB3 sing N N 195 GLN CG CD sing N N 196 GLN CG HG2 sing N N 197 GLN CG HG3 sing N N 198 GLN CD OE1 doub N N 199 GLN CD NE2 sing N N 200 GLN NE2 HE21 sing N N 201 GLN NE2 HE22 sing N N 202 GLN OXT HXT sing N N 203 GLU N CA sing N N 204 GLU N H sing N N 205 GLU N H2 sing N N 206 GLU CA C sing N N 207 GLU CA CB sing N N 208 GLU CA HA sing N N 209 GLU C O doub N N 210 GLU C OXT sing N N 211 GLU CB CG sing N N 212 GLU CB HB2 sing N N 213 GLU CB HB3 sing N N 214 GLU CG CD sing N N 215 GLU CG HG2 sing N N 216 GLU CG HG3 sing N N 217 GLU CD OE1 doub N N 218 GLU CD OE2 sing N N 219 GLU OE2 HE2 sing N N 220 GLU OXT HXT sing N N 221 GLY N CA sing N N 222 GLY N H sing N N 223 GLY N H2 sing N N 224 GLY CA C sing N N 225 GLY CA HA2 sing N N 226 GLY CA HA3 sing N N 227 GLY C O doub N N 228 GLY C OXT sing N N 229 GLY OXT HXT sing N N 230 HIS N CA sing N N 231 HIS N H sing N N 232 HIS N H2 sing N N 233 HIS CA C sing N N 234 HIS CA CB sing N N 235 HIS CA HA sing N N 236 HIS C O doub N N 237 HIS C OXT sing N N 238 HIS CB CG sing N N 239 HIS CB HB2 sing N N 240 HIS CB HB3 sing N N 241 HIS CG ND1 sing Y N 242 HIS CG CD2 doub Y N 243 HIS ND1 CE1 doub Y N 244 HIS ND1 HD1 sing N N 245 HIS CD2 NE2 sing Y N 246 HIS CD2 HD2 sing N N 247 HIS CE1 NE2 sing Y N 248 HIS CE1 HE1 sing N N 249 HIS NE2 HE2 sing N N 250 HIS OXT HXT sing N N 251 HOH O H1 sing N N 252 HOH O H2 sing N N 253 ILE N CA sing N N 254 ILE N H sing N N 255 ILE N H2 sing N N 256 ILE CA C sing N N 257 ILE CA CB sing N N 258 ILE CA HA sing N N 259 ILE C O doub N N 260 ILE C OXT sing N N 261 ILE CB CG1 sing N N 262 ILE CB CG2 sing N N 263 ILE CB HB sing N N 264 ILE CG1 CD1 sing N N 265 ILE CG1 HG12 sing N N 266 ILE CG1 HG13 sing N N 267 ILE CG2 HG21 sing N N 268 ILE CG2 HG22 sing N N 269 ILE CG2 HG23 sing N N 270 ILE CD1 HD11 sing N N 271 ILE CD1 HD12 sing N N 272 ILE CD1 HD13 sing N N 273 ILE OXT HXT sing N N 274 LEU N CA sing N N 275 LEU N H sing N N 276 LEU N H2 sing N N 277 LEU CA C sing N N 278 LEU CA CB sing N N 279 LEU CA HA sing N N 280 LEU C O doub N N 281 LEU C OXT sing N N 282 LEU CB CG sing N N 283 LEU CB HB2 sing N N 284 LEU CB HB3 sing N N 285 LEU CG CD1 sing N N 286 LEU CG CD2 sing N N 287 LEU CG HG sing N N 288 LEU CD1 HD11 sing N N 289 LEU CD1 HD12 sing N N 290 LEU CD1 HD13 sing N N 291 LEU CD2 HD21 sing N N 292 LEU CD2 HD22 sing N N 293 LEU CD2 HD23 sing N N 294 LEU OXT HXT sing N N 295 LYS N CA sing N N 296 LYS N H sing N N 297 LYS N H2 sing N N 298 LYS CA C sing N N 299 LYS CA CB sing N N 300 LYS CA HA sing N N 301 LYS C O doub N N 302 LYS C OXT sing N N 303 LYS CB CG sing N N 304 LYS CB HB2 sing N N 305 LYS CB HB3 sing N N 306 LYS CG CD sing N N 307 LYS CG HG2 sing N N 308 LYS CG HG3 sing N N 309 LYS CD CE sing N N 310 LYS CD HD2 sing N N 311 LYS CD HD3 sing N N 312 LYS CE NZ sing N N 313 LYS CE HE2 sing N N 314 LYS CE HE3 sing N N 315 LYS NZ HZ1 sing N N 316 LYS NZ HZ2 sing N N 317 LYS NZ HZ3 sing N N 318 LYS OXT HXT sing N N 319 MET N CA sing N N 320 MET N H sing N N 321 MET N H2 sing N N 322 MET CA C sing N N 323 MET CA CB sing N N 324 MET CA HA sing N N 325 MET C O doub N N 326 MET C OXT sing N N 327 MET CB CG sing N N 328 MET CB HB2 sing N N 329 MET CB HB3 sing N N 330 MET CG SD sing N N 331 MET CG HG2 sing N N 332 MET CG HG3 sing N N 333 MET SD CE sing N N 334 MET CE HE1 sing N N 335 MET CE HE2 sing N N 336 MET CE HE3 sing N N 337 MET OXT HXT sing N N 338 PHE N CA sing N N 339 PHE N H sing N N 340 PHE N H2 sing N N 341 PHE CA C sing N N 342 PHE CA CB sing N N 343 PHE CA HA sing N N 344 PHE C O doub N N 345 PHE C OXT sing N N 346 PHE CB CG sing N N 347 PHE CB HB2 sing N N 348 PHE CB HB3 sing N N 349 PHE CG CD1 doub Y N 350 PHE CG CD2 sing Y N 351 PHE CD1 CE1 sing Y N 352 PHE CD1 HD1 sing N N 353 PHE CD2 CE2 doub Y N 354 PHE CD2 HD2 sing N N 355 PHE CE1 CZ doub Y N 356 PHE CE1 HE1 sing N N 357 PHE CE2 CZ sing Y N 358 PHE CE2 HE2 sing N N 359 PHE CZ HZ sing N N 360 PHE OXT HXT sing N N 361 PRO N CA sing N N 362 PRO N CD sing N N 363 PRO N H sing N N 364 PRO CA C sing N N 365 PRO CA CB sing N N 366 PRO CA HA sing N N 367 PRO C O doub N N 368 PRO C OXT sing N N 369 PRO CB CG sing N N 370 PRO CB HB2 sing N N 371 PRO CB HB3 sing N N 372 PRO CG CD sing N N 373 PRO CG HG2 sing N N 374 PRO CG HG3 sing N N 375 PRO CD HD2 sing N N 376 PRO CD HD3 sing N N 377 PRO OXT HXT sing N N 378 SER N CA sing N N 379 SER N H sing N N 380 SER N H2 sing N N 381 SER CA C sing N N 382 SER CA CB sing N N 383 SER CA HA sing N N 384 SER C O doub N N 385 SER C OXT sing N N 386 SER CB OG sing N N 387 SER CB HB2 sing N N 388 SER CB HB3 sing N N 389 SER OG HG sing N N 390 SER OXT HXT sing N N 391 THR N CA sing N N 392 THR N H sing N N 393 THR N H2 sing N N 394 THR CA C sing N N 395 THR CA CB sing N N 396 THR CA HA sing N N 397 THR C O doub N N 398 THR C OXT sing N N 399 THR CB OG1 sing N N 400 THR CB CG2 sing N N 401 THR CB HB sing N N 402 THR OG1 HG1 sing N N 403 THR CG2 HG21 sing N N 404 THR CG2 HG22 sing N N 405 THR CG2 HG23 sing N N 406 THR OXT HXT sing N N 407 TYR N CA sing N N 408 TYR N H sing N N 409 TYR N H2 sing N N 410 TYR CA C sing N N 411 TYR CA CB sing N N 412 TYR CA HA sing N N 413 TYR C O doub N N 414 TYR C OXT sing N N 415 TYR CB CG sing N N 416 TYR CB HB2 sing N N 417 TYR CB HB3 sing N N 418 TYR CG CD1 doub Y N 419 TYR CG CD2 sing Y N 420 TYR CD1 CE1 sing Y N 421 TYR CD1 HD1 sing N N 422 TYR CD2 CE2 doub Y N 423 TYR CD2 HD2 sing N N 424 TYR CE1 CZ doub Y N 425 TYR CE1 HE1 sing N N 426 TYR CE2 CZ sing Y N 427 TYR CE2 HE2 sing N N 428 TYR CZ OH sing N N 429 TYR OH HH sing N N 430 TYR OXT HXT sing N N 431 U OP3 P sing N N 432 U OP3 HOP3 sing N N 433 U P OP1 doub N N 434 U P OP2 sing N N 435 U P "O5'" sing N N 436 U OP2 HOP2 sing N N 437 U "O5'" "C5'" sing N N 438 U "C5'" "C4'" sing N N 439 U "C5'" "H5'" sing N N 440 U "C5'" "H5''" sing N N 441 U "C4'" "O4'" sing N N 442 U "C4'" "C3'" sing N N 443 U "C4'" "H4'" sing N N 444 U "O4'" "C1'" sing N N 445 U "C3'" "O3'" sing N N 446 U "C3'" "C2'" sing N N 447 U "C3'" "H3'" sing N N 448 U "O3'" "HO3'" sing N N 449 U "C2'" "O2'" sing N N 450 U "C2'" "C1'" sing N N 451 U "C2'" "H2'" sing N N 452 U "O2'" "HO2'" sing N N 453 U "C1'" N1 sing N N 454 U "C1'" "H1'" sing N N 455 U N1 C2 sing N N 456 U N1 C6 sing N N 457 U C2 O2 doub N N 458 U C2 N3 sing N N 459 U N3 C4 sing N N 460 U N3 H3 sing N N 461 U C4 O4 doub N N 462 U C4 C5 sing N N 463 U C5 C6 doub N N 464 U C5 H5 sing N N 465 U C6 H6 sing N N 466 VAL N CA sing N N 467 VAL N H sing N N 468 VAL N H2 sing N N 469 VAL CA C sing N N 470 VAL CA CB sing N N 471 VAL CA HA sing N N 472 VAL C O doub N N 473 VAL C OXT sing N N 474 VAL CB CG1 sing N N 475 VAL CB CG2 sing N N 476 VAL CB HB sing N N 477 VAL CG1 HG11 sing N N 478 VAL CG1 HG12 sing N N 479 VAL CG1 HG13 sing N N 480 VAL CG2 HG21 sing N N 481 VAL CG2 HG22 sing N N 482 VAL CG2 HG23 sing N N 483 VAL OXT HXT sing N N 484 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1DFU 'double helix' 1DFU 'a-form double helix' 1DFU 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 18 1_555 0.263 -0.168 -0.184 9.902 -7.773 2.338 1 M_C91:G85_N M 91 ? N 85 ? 19 1 1 A C 2 1_555 B G 17 1_555 0.060 -0.149 -0.030 2.744 -8.689 -0.251 2 M_C92:G84_N M 92 ? N 84 ? 19 1 1 A C 3 1_555 B G 16 1_555 0.024 -0.094 0.068 0.916 -7.452 -0.492 3 M_C93:G83_N M 93 ? N 83 ? 19 1 1 A A 4 1_555 B U 15 1_555 0.130 -0.071 -0.161 -2.830 -12.628 2.530 4 M_A94:U82_N M 94 ? N 82 ? 20 1 1 A U 5 1_555 B G 14 1_555 2.184 -0.659 0.124 1.286 -8.434 -2.738 5 M_U95:G81_N M 95 ? N 81 ? 28 1 1 A G 6 1_555 B U 13 1_555 -2.239 -0.493 -0.324 -8.227 -5.981 1.533 6 M_G96:U80_N M 96 ? N 80 ? 28 1 1 A C 7 1_555 B G 12 1_555 0.396 -0.198 -0.321 -2.219 -2.316 0.763 7 M_C97:G79_N M 97 ? N 79 ? 19 1 1 A G 8 1_555 B A 11 1_555 6.799 -4.186 0.021 -3.803 3.612 -1.743 8 M_G98:A78_N M 98 ? N 78 ? 11 9 1 A A 9 1_555 B U 10 1_555 -4.219 -2.172 -1.021 -2.582 -22.360 -94.312 9 M_A99:U77_N M 99 ? N 77 ? 24 4 1 A G 10 1_555 B G 9 1_555 -3.883 1.328 -0.242 -10.707 -12.063 -67.260 10 M_G100:G76_N M 100 ? N 76 ? ? ? 1 A A 11 1_555 B G 8 1_555 0.448 2.848 -0.816 -1.904 -12.098 -60.835 11 M_A101:G75_N M 101 ? N 75 ? ? ? 1 A G 12 1_555 B U 7 1_555 4.589 0.364 -0.075 5.957 -4.039 -56.629 12 M_G102:U74_N M 102 ? N 74 ? ? 1 1 A U 13 1_555 B A 6 1_555 4.123 -2.257 -0.819 4.280 -15.665 -94.323 13 M_U103:A73_N M 103 ? N 73 ? 24 4 1 A A 14 1_555 B G 5 1_555 -6.845 -4.165 -0.253 -1.917 1.434 -3.772 14 M_A104:G72_N M 104 ? N 72 ? 11 10 1 A G 15 1_555 B C 4 1_555 -0.483 -0.131 -0.166 4.235 -5.108 2.765 15 M_G105:C71_N M 105 ? N 71 ? 19 1 1 A G 16 1_555 B C 3 1_555 -0.139 -0.103 -0.487 -5.955 -3.837 5.033 16 M_G106:C70_N M 106 ? N 70 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 18 1_555 A C 2 1_555 B G 17 1_555 -0.414 -2.041 3.362 -2.244 8.373 30.568 -5.195 0.365 2.743 15.493 4.152 31.745 1 MM_C91C92:G84G85_NN M 91 ? N 85 ? M 92 ? N 84 ? 1 A C 2 1_555 B G 17 1_555 A C 3 1_555 B G 16 1_555 -0.568 -2.034 3.251 -2.463 5.740 28.707 -5.175 0.623 2.837 11.407 4.895 29.365 2 MM_C92C93:G83G84_NN M 92 ? N 84 ? M 93 ? N 83 ? 1 A C 3 1_555 B G 16 1_555 A A 4 1_555 B U 15 1_555 -0.319 -1.437 3.156 0.981 17.364 33.526 -4.178 0.604 2.169 27.892 -1.576 37.653 3 MM_C93A94:U82G83_NN M 93 ? N 83 ? M 94 ? N 82 ? 1 A A 4 1_555 B U 15 1_555 A U 5 1_555 B G 14 1_555 -0.165 -1.192 3.174 -2.182 9.347 38.828 -2.746 0.007 2.829 13.805 3.222 39.953 4 MM_A94U95:G81U82_NN M 94 ? N 82 ? M 95 ? N 81 ? 1 A U 5 1_555 B G 14 1_555 A G 6 1_555 B U 13 1_555 1.287 -2.121 3.241 6.216 11.674 19.919 -8.477 -1.327 2.015 29.865 -15.902 23.873 5 MM_U95G96:U80G81_NN M 95 ? N 81 ? M 96 ? N 80 ? 1 A G 6 1_555 B U 13 1_555 A C 7 1_555 B G 12 1_555 0.058 -2.057 3.249 0.409 2.316 35.369 -3.710 -0.036 3.113 3.808 -0.672 35.444 6 MM_G96C97:G79U80_NN M 96 ? N 80 ? M 97 ? N 79 ? 1 A C 7 1_555 B G 12 1_555 A G 8 1_555 B A 11 1_555 -0.123 -1.142 3.491 -1.546 3.215 59.656 -1.316 0.042 3.433 3.229 1.553 59.753 7 MM_C97G98:A78G79_NN M 97 ? N 79 ? M 98 ? N 78 ? 1 A G 8 1_555 B A 11 1_555 A A 9 1_555 B U 10 1_555 -5.130 -1.771 3.303 1.311 -0.397 -15.266 6.979 -18.120 3.681 1.489 4.921 -15.327 8 MM_G98A99:U77A78_NN M 98 ? N 78 ? M 99 ? N 77 ? 1 A A 9 1_555 B U 10 1_555 A G 10 1_555 B G 9 1_555 1.122 -2.660 3.287 -0.337 -0.188 49.613 -3.157 -1.362 3.290 -0.224 0.401 49.614 9 MM_A99G100:G76U77_NN M 99 ? N 77 ? M 100 ? N 76 ? 1 A G 10 1_555 B G 9 1_555 A A 11 1_555 B G 8 1_555 0.535 -2.499 3.372 2.244 10.496 46.394 -3.906 -0.491 2.798 13.118 -2.804 47.552 10 MM_G100A101:G75G76_NN M 100 ? N 76 ? M 101 ? N 75 ? 1 A A 11 1_555 B G 8 1_555 A G 12 1_555 B U 7 1_555 -0.042 -2.215 3.244 -3.293 2.924 44.256 -3.190 -0.240 3.094 3.870 4.358 44.464 11 MM_A101G102:U74G75_NN M 101 ? N 75 ? M 102 ? N 74 ? 1 A G 12 1_555 B U 7 1_555 A U 13 1_555 B A 6 1_555 -1.956 -2.550 3.330 -1.991 0.403 46.706 -3.249 2.295 3.385 0.508 2.510 46.748 12 MM_G102U103:A73U74_NN M 102 ? N 74 ? M 103 ? N 73 ? 1 A U 13 1_555 B A 6 1_555 A A 14 1_555 B G 5 1_555 5.211 -1.374 3.536 2.974 3.496 -13.961 2.442 22.868 2.636 -13.902 11.827 -14.693 13 MM_U103A104:G72A73_NN M 103 ? N 73 ? M 104 ? N 72 ? 1 A A 14 1_555 B G 5 1_555 A G 15 1_555 B C 4 1_555 0.503 -0.971 3.269 -2.056 2.341 58.415 -1.115 -0.621 3.214 2.396 2.105 58.491 14 MM_A104G105:C71G72_NN M 104 ? N 72 ? M 105 ? N 71 ? 1 A G 15 1_555 B C 4 1_555 A G 16 1_555 B C 3 1_555 0.420 -2.178 3.624 2.271 5.681 32.218 -4.891 -0.332 3.224 10.122 -4.047 32.779 15 MM_G105G106:C70C71_NN M 105 ? N 71 ? M 106 ? N 70 ? # _atom_sites.entry_id 1DFU _atom_sites.fract_transf_matrix[1][1] 0.013257 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013063 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010515 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_