data_1DGC # _entry.id 1DGC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DGC pdb_00001dgc 10.2210/pdb1dgc/pdb RCSB PDT007 ? ? WWPDB D_1000172775 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-06-22 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DGC _pdbx_database_status.recvd_initial_deposition_date 1993-07-15 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Koenig, P.' 1 'Richmond, T.J.' 2 # _citation.id primary _citation.title 'The X-ray structure of the GCN4-bZIP bound to ATF/CREB site DNA shows the complex depends on DNA flexibility.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 233 _citation.page_first 139 _citation.page_last 154 _citation.year 1993 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8377181 _citation.pdbx_database_id_DOI 10.1006/jmbi.1993.1490 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Konig, P.' 1 ? primary 'Richmond, T.J.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*GP*GP*AP*GP*AP*TP*GP*AP*CP*GP*TP*CP*AP*TP*CP*T P*CP*C)-3') ; 5820.771 1 ? ? ? ? 2 polymer nat 'PROTEIN (GCN4)' 7244.369 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DG)(DG)(DA)(DG)(DA)(DT)(DG)(DA)(DC)(DG)(DT)(DC)(DA)(DT)(DC)(DT)(DC)(DC)' TGGAGATGACGTCATCTCC B ? 2 'polypeptide(L)' no no IVPESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGER IVPESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGER A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DG n 1 4 DA n 1 5 DG n 1 6 DA n 1 7 DT n 1 8 DG n 1 9 DA n 1 10 DC n 1 11 DG n 1 12 DT n 1 13 DC n 1 14 DA n 1 15 DT n 1 16 DC n 1 17 DT n 1 18 DC n 1 19 DC n 2 1 ILE n 2 2 VAL n 2 3 PRO n 2 4 GLU n 2 5 SER n 2 6 SER n 2 7 ASP n 2 8 PRO n 2 9 ALA n 2 10 ALA n 2 11 LEU n 2 12 LYS n 2 13 ARG n 2 14 ALA n 2 15 ARG n 2 16 ASN n 2 17 THR n 2 18 GLU n 2 19 ALA n 2 20 ALA n 2 21 ARG n 2 22 ARG n 2 23 SER n 2 24 ARG n 2 25 ALA n 2 26 ARG n 2 27 LYS n 2 28 LEU n 2 29 GLN n 2 30 ARG n 2 31 MET n 2 32 LYS n 2 33 GLN n 2 34 LEU n 2 35 GLU n 2 36 ASP n 2 37 LYS n 2 38 VAL n 2 39 GLU n 2 40 GLU n 2 41 LEU n 2 42 LEU n 2 43 SER n 2 44 LYS n 2 45 ASN n 2 46 TYR n 2 47 HIS n 2 48 LEU n 2 49 GLU n 2 50 ASN n 2 51 GLU n 2 52 VAL n 2 53 ALA n 2 54 ARG n 2 55 LEU n 2 56 LYS n 2 57 LYS n 2 58 LEU n 2 59 VAL n 2 60 GLY n 2 61 GLU n 2 62 ARG n # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ;baker's yeast ; _entity_src_nat.pdbx_organism_scientific 'Saccharomyces cerevisiae' _entity_src_nat.pdbx_ncbi_taxonomy_id 4932 _entity_src_nat.genus Saccharomyces _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 -10 -10 DT T B . n A 1 2 DG 2 -9 -9 DG G B . n A 1 3 DG 3 -8 -8 DG G B . n A 1 4 DA 4 -7 -7 DA A B . n A 1 5 DG 5 -6 -6 DG G B . n A 1 6 DA 6 -5 -5 DA A B . n A 1 7 DT 7 -4 -4 DT T B . n A 1 8 DG 8 -3 -3 DG G B . n A 1 9 DA 9 -2 -2 DA A B . n A 1 10 DC 10 -1 -1 DC C B . n A 1 11 DG 11 1 1 DG G B . n A 1 12 DT 12 2 2 DT T B . n A 1 13 DC 13 3 3 DC C B . n A 1 14 DA 14 4 4 DA A B . n A 1 15 DT 15 5 5 DT T B . n A 1 16 DC 16 6 6 DC C B . n A 1 17 DT 17 7 7 DT T B . n A 1 18 DC 18 8 8 DC C B . n A 1 19 DC 19 9 9 DC C B . n B 2 1 ILE 1 220 ? ? ? A . n B 2 2 VAL 2 221 ? ? ? A . n B 2 3 PRO 3 222 ? ? ? A . n B 2 4 GLU 4 223 ? ? ? A . n B 2 5 SER 5 224 ? ? ? A . n B 2 6 SER 6 225 ? ? ? A . n B 2 7 ASP 7 226 ? ? ? A . n B 2 8 PRO 8 227 227 PRO PRO A . n B 2 9 ALA 9 228 228 ALA ALA A . n B 2 10 ALA 10 229 229 ALA ALA A . n B 2 11 LEU 11 230 230 LEU LEU A . n B 2 12 LYS 12 231 231 LYS LYS A . n B 2 13 ARG 13 232 232 ARG ARG A . n B 2 14 ALA 14 233 233 ALA ALA A . n B 2 15 ARG 15 234 234 ARG ARG A . n B 2 16 ASN 16 235 235 ASN ASN A . n B 2 17 THR 17 236 236 THR THR A . n B 2 18 GLU 18 237 237 GLU GLU A . n B 2 19 ALA 19 238 238 ALA ALA A . n B 2 20 ALA 20 239 239 ALA ALA A . n B 2 21 ARG 21 240 240 ARG ARG A . n B 2 22 ARG 22 241 241 ARG ARG A . n B 2 23 SER 23 242 242 SER SER A . n B 2 24 ARG 24 243 243 ARG ARG A . n B 2 25 ALA 25 244 244 ALA ALA A . n B 2 26 ARG 26 245 245 ARG ARG A . n B 2 27 LYS 27 246 246 LYS LYS A . n B 2 28 LEU 28 247 247 LEU LEU A . n B 2 29 GLN 29 248 248 GLN GLN A . n B 2 30 ARG 30 249 249 ARG ARG A . n B 2 31 MET 31 250 250 MET MET A . n B 2 32 LYS 32 251 251 LYS LYS A . n B 2 33 GLN 33 252 252 GLN GLN A . n B 2 34 LEU 34 253 253 LEU LEU A . n B 2 35 GLU 35 254 254 GLU GLU A . n B 2 36 ASP 36 255 255 ASP ASP A . n B 2 37 LYS 37 256 256 LYS LYS A . n B 2 38 VAL 38 257 257 VAL VAL A . n B 2 39 GLU 39 258 258 GLU GLU A . n B 2 40 GLU 40 259 259 GLU GLU A . n B 2 41 LEU 41 260 260 LEU LEU A . n B 2 42 LEU 42 261 261 LEU LEU A . n B 2 43 SER 43 262 262 SER SER A . n B 2 44 LYS 44 263 263 LYS LYS A . n B 2 45 ASN 45 264 264 ASN ASN A . n B 2 46 TYR 46 265 265 TYR TYR A . n B 2 47 HIS 47 266 266 HIS HIS A . n B 2 48 LEU 48 267 267 LEU LEU A . n B 2 49 GLU 49 268 268 GLU GLU A . n B 2 50 ASN 50 269 269 ASN ASN A . n B 2 51 GLU 51 270 270 GLU GLU A . n B 2 52 VAL 52 271 271 VAL VAL A . n B 2 53 ALA 53 272 272 ALA ALA A . n B 2 54 ARG 54 273 273 ARG ARG A . n B 2 55 LEU 55 274 274 LEU LEU A . n B 2 56 LYS 56 275 275 LYS LYS A . n B 2 57 LYS 57 276 276 LYS LYS A . n B 2 58 LEU 58 277 277 LEU LEU A . n B 2 59 VAL 59 278 278 VAL VAL A . n B 2 60 GLY 60 279 279 GLY GLY A . n B 2 61 GLU 61 280 280 GLU GLU A . n B 2 62 ARG 62 281 281 ARG ARG A . n # _software.name X-PLOR _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1DGC _cell.length_a 58.660 _cell.length_b 58.660 _cell.length_c 86.660 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DGC _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # _exptl.entry_id 1DGC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas 1.2800 _exptl_crystal.density_Matthews 2.80 _exptl_crystal.density_percent_sol 56.14 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.25 _exptl_crystal_grow.pdbx_details 'pH 5.25, VAPOR DIFFUSION, HANGING DROP, temperature 277.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 'PEG 6000' ? ? ? 1 3 1 'NA CITRATE' ? ? ? 1 4 1 CACL2 ? ? ? 1 5 2 WATER ? ? ? 1 6 2 'PEG 6000' ? ? ? 1 7 2 'NA CITRATE' ? ? ? 1 8 2 CACL2 ? ? ? # _reflns.entry_id 1DGC _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 3.000 _reflns.number_obs ? _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1DGC _refine.ls_number_reflns_obs 3296 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 3.000 _refine.ls_percent_reflns_obs 98.200 _refine.ls_R_factor_obs 0.2160000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2160000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 456 _refine_hist.pdbx_number_atoms_nucleic_acid 386 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 842 _refine_hist.d_res_high 3.000 _refine_hist.d_res_low 10.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.020 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 3.86 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1DGC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1DGC _struct.title 'THE X-RAY STRUCTURE OF THE GCN4-BZIP BOUND TO ATF/CREB SITE DNA SHOWS THE COMPLEX DEPENDS ON DNA FLEXIBILITY' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DGC _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'PROTEIN-DNA COMPLEX, DOUBLE HELIX, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP GCN4_YEAST 2 ? ? P03069 ? 2 PDB 1DGC 1 ? ? 1DGC ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1DGC A 1 ? 62 ? P03069 220 ? 281 ? 220 281 2 2 1DGC B 1 ? 19 ? 1DGC -10 ? 9 ? -10 9 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_775 -y+2,-x+2,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 117.3200000000 -1.0000000000 0.0000000000 0.0000000000 117.3200000000 0.0000000000 0.0000000000 -1.0000000000 43.3300000000 # _struct_biol.id 1 _struct_biol.details ;THE ASYMMETRIC UNIT CONTAINS ONE HALF OF PROTEIN/DNA COMPLEX PER ASYMMETRIC UNIT. MOLECULAR DYAD AXIS OF PROTEIN DIMER AND PALINDROMIC HALF SITES OF THE DNA COINCIDES WITH CRYSTALLOGRAPHIC TWO-FOLD AXIS. THE FULL PROTEIN/DNA COMPLEX CAN BE OBTAINED BY APPLYING THE FOLLOWING TRANSFORMATION MATRIX AND TRANSLATION VECTOR TO THE COORDINATES X Y Z: 0 -1 0 X 117.32 X SYMM -1 0 0 Y + 117.32 = Y SYMM 0 0 -1 Z 43.33 Z SYMM ; _struct_biol.pdbx_parent_biol_id ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id A _struct_conf.beg_label_comp_id ALA _struct_conf.beg_label_asym_id B _struct_conf.beg_label_seq_id 9 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LYS _struct_conf.end_label_asym_id B _struct_conf.end_label_seq_id 57 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ALA _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 228 _struct_conf.end_auth_comp_id LYS _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 276 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 49 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 19 N3 ? ? B DG -9 B DC 9 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 19 O2 ? ? B DG -9 B DC 9 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 19 N4 ? ? B DG -9 B DC 9 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 18 N3 ? ? B DG -8 B DC 8 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 18 O2 ? ? B DG -8 B DC 8 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 18 N4 ? ? B DG -8 B DC 8 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 17 N3 ? ? B DA -7 B DT 7 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 17 O4 ? ? B DA -7 B DT 7 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 16 N3 ? ? B DG -6 B DC 6 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 16 O2 ? ? B DG -6 B DC 6 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 16 N4 ? ? B DG -6 B DC 6 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 6 N1 ? ? ? 1_555 A DT 15 N3 ? ? B DA -5 B DT 5 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DT 15 O4 ? ? B DA -5 B DT 5 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 7 N3 ? ? ? 1_555 A DA 14 N1 ? ? B DT -4 B DA 4 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 O4 ? ? ? 1_555 A DA 14 N6 ? ? B DT -4 B DA 4 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DC 13 N3 ? ? B DG -3 B DC 3 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DC 13 O2 ? ? B DG -3 B DC 3 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DC 13 N4 ? ? B DG -3 B DC 3 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 9 N1 ? ? ? 1_555 A DT 12 N3 ? ? B DA -2 B DT 2 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 9 N6 ? ? ? 1_555 A DT 12 O4 ? ? B DA -2 B DT 2 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 10 N3 ? ? ? 1_555 A DG 11 N1 ? ? B DC -1 B DG 1 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 10 N4 ? ? ? 1_555 A DG 11 O6 ? ? B DC -1 B DG 1 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 O2 ? ? ? 1_555 A DG 11 N2 ? ? B DC -1 B DG 1 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 11 N1 ? ? ? 1_555 A DC 10 N3 ? ? B DG 1 B DC -1 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DC 10 O2 ? ? B DG 1 B DC -1 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 11 O6 ? ? ? 1_555 A DC 10 N4 ? ? B DG 1 B DC -1 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 12 N3 ? ? ? 1_555 A DA 9 N1 ? ? B DT 2 B DA -2 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 12 O4 ? ? ? 1_555 A DA 9 N6 ? ? B DT 2 B DA -2 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 13 N3 ? ? ? 1_555 A DG 8 N1 ? ? B DC 3 B DG -3 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 13 N4 ? ? ? 1_555 A DG 8 O6 ? ? B DC 3 B DG -3 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 13 O2 ? ? ? 1_555 A DG 8 N2 ? ? B DC 3 B DG -3 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DA 14 N1 ? ? ? 1_555 A DT 7 N3 ? ? B DA 4 B DT -4 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DA 14 N6 ? ? ? 1_555 A DT 7 O4 ? ? B DA 4 B DT -4 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DT 15 N3 ? ? ? 1_555 A DA 6 N1 ? ? B DT 5 B DA -5 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DT 15 O4 ? ? ? 1_555 A DA 6 N6 ? ? B DT 5 B DA -5 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 16 N3 ? ? ? 1_555 A DG 5 N1 ? ? B DC 6 B DG -6 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 16 N4 ? ? ? 1_555 A DG 5 O6 ? ? B DC 6 B DG -6 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 16 O2 ? ? ? 1_555 A DG 5 N2 ? ? B DC 6 B DG -6 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DT 17 N3 ? ? ? 1_555 A DA 4 N1 ? ? B DT 7 B DA -7 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DT 17 O4 ? ? ? 1_555 A DA 4 N6 ? ? B DT 7 B DA -7 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 18 N3 ? ? ? 1_555 A DG 3 N1 ? ? B DC 8 B DG -8 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 18 N4 ? ? ? 1_555 A DG 3 O6 ? ? B DC 8 B DG -8 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DC 18 O2 ? ? ? 1_555 A DG 3 N2 ? ? B DC 8 B DG -8 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DC 19 N3 ? ? ? 1_555 A DG 2 N1 ? ? B DC 9 B DG -9 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DC 19 N4 ? ? ? 1_555 A DG 2 O6 ? ? B DC 9 B DG -9 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DC 19 O2 ? ? ? 1_555 A DG 2 N2 ? ? B DC 9 B DG -9 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" B DT -10 ? ? "C4'" B DT -10 ? ? 1.568 1.512 0.056 0.007 N 2 1 P B DG -9 ? ? "O5'" B DG -9 ? ? 1.672 1.593 0.079 0.010 N 3 1 "C5'" B DG -9 ? ? "C4'" B DG -9 ? ? 1.585 1.512 0.073 0.007 N 4 1 "C5'" B DG -8 ? ? "C4'" B DG -8 ? ? 1.580 1.512 0.068 0.007 N 5 1 C5 B DT -4 ? ? C7 B DT -4 ? ? 1.534 1.496 0.038 0.006 N 6 1 C6 B DG -3 ? ? N1 B DG -3 ? ? 1.346 1.391 -0.045 0.007 N 7 1 "C5'" B DT 5 ? ? "C4'" B DT 5 ? ? 1.562 1.512 0.050 0.007 N 8 1 C6 B DT 5 ? ? N1 B DT 5 ? ? 1.326 1.378 -0.052 0.007 N 9 1 P B DC 6 ? ? "O5'" B DC 6 ? ? 1.703 1.593 0.110 0.010 N 10 1 "C5'" B DC 6 ? ? "C4'" B DC 6 ? ? 1.562 1.512 0.050 0.007 N 11 1 C5 B DT 7 ? ? C7 B DT 7 ? ? 1.536 1.496 0.040 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DT -10 ? ? "C1'" B DT -10 ? ? "C2'" B DT -10 ? ? 100.19 105.90 -5.71 0.80 N 2 1 C4 B DT -10 ? ? C5 B DT -10 ? ? C7 B DT -10 ? ? 122.66 119.00 3.66 0.60 N 3 1 C6 B DT -10 ? ? C5 B DT -10 ? ? C7 B DT -10 ? ? 117.41 122.90 -5.49 0.60 N 4 1 "O4'" B DG -9 ? ? "C1'" B DG -9 ? ? N9 B DG -9 ? ? 122.83 108.30 14.53 0.30 N 5 1 P B DG -8 ? ? "O5'" B DG -8 ? ? "C5'" B DG -8 ? ? 135.92 120.90 15.02 1.60 N 6 1 "C5'" B DG -8 ? ? "C4'" B DG -8 ? ? "O4'" B DG -8 ? ? 117.77 109.80 7.97 1.10 N 7 1 "O4'" B DG -8 ? ? "C1'" B DG -8 ? ? N9 B DG -8 ? ? 110.65 108.30 2.35 0.30 N 8 1 "O4'" B DA -5 ? ? "C1'" B DA -5 ? ? N9 B DA -5 ? ? 116.98 108.30 8.68 0.30 N 9 1 "C3'" B DA -5 ? ? "O3'" B DA -5 ? ? P B DT -4 ? ? 131.06 119.70 11.36 1.20 Y 10 1 N3 B DT -4 ? ? C2 B DT -4 ? ? O2 B DT -4 ? ? 118.17 122.30 -4.13 0.60 N 11 1 C6 B DT -4 ? ? C5 B DT -4 ? ? C7 B DT -4 ? ? 119.12 122.90 -3.78 0.60 N 12 1 "O3'" B DT -4 ? ? P B DG -3 ? ? "O5'" B DG -3 ? ? 89.74 104.00 -14.26 1.90 Y 13 1 "C5'" B DG -3 ? ? "C4'" B DG -3 ? ? "C3'" B DG -3 ? ? 101.97 114.10 -12.13 1.80 N 14 1 "O4'" B DG -3 ? ? "C1'" B DG -3 ? ? N9 B DG -3 ? ? 115.00 108.30 6.70 0.30 N 15 1 "O4'" B DA -2 ? ? "C1'" B DA -2 ? ? N9 B DA -2 ? ? 112.00 108.30 3.70 0.30 N 16 1 N1 B DC -1 ? ? C2 B DC -1 ? ? O2 B DC -1 ? ? 122.51 118.90 3.61 0.60 N 17 1 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DT 2 ? ? 133.83 119.70 14.13 1.20 Y 18 1 "O4'" B DT 2 ? ? "C4'" B DT 2 ? ? "C3'" B DT 2 ? ? 100.00 104.50 -4.50 0.40 N 19 1 "O4'" B DT 2 ? ? "C1'" B DT 2 ? ? "C2'" B DT 2 ? ? 98.64 105.90 -7.26 0.80 N 20 1 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? "C2'" B DC 3 ? ? 100.14 105.90 -5.76 0.80 N 21 1 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 115.96 108.30 7.66 0.30 N 22 1 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 117.30 108.30 9.00 0.30 N 23 1 "C5'" B DT 5 ? ? "C4'" B DT 5 ? ? "O4'" B DT 5 ? ? 119.72 109.80 9.92 1.10 N 24 1 "O4'" B DT 5 ? ? "C1'" B DT 5 ? ? N1 B DT 5 ? ? 111.70 108.30 3.40 0.30 N 25 1 C4 B DT 5 ? ? C5 B DT 5 ? ? C6 B DT 5 ? ? 122.29 118.00 4.29 0.60 N 26 1 N3 B DT 5 ? ? C2 B DT 5 ? ? O2 B DT 5 ? ? 116.26 122.30 -6.04 0.60 N 27 1 C6 B DT 5 ? ? C5 B DT 5 ? ? C7 B DT 5 ? ? 119.16 122.90 -3.74 0.60 N 28 1 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 118.35 108.30 10.05 0.30 N 29 1 N1 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 123.42 118.90 4.52 0.60 N 30 1 N3 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 117.61 121.90 -4.29 0.70 N 31 1 "C4'" B DT 7 ? ? "C3'" B DT 7 ? ? "O3'" B DT 7 ? ? 125.02 112.30 12.72 2.00 N 32 1 "O4'" B DT 7 ? ? "C1'" B DT 7 ? ? N1 B DT 7 ? ? 114.91 108.30 6.61 0.30 N 33 1 "C3'" B DT 7 ? ? "O3'" B DT 7 ? ? P B DC 8 ? ? 133.16 119.70 13.46 1.20 Y 34 1 N1 B DC 8 ? ? "C1'" B DC 8 ? ? "C2'" B DC 8 ? ? 101.00 112.60 -11.60 1.90 N 35 1 "O4'" B DC 8 ? ? "C1'" B DC 8 ? ? N1 B DC 8 ? ? 116.13 108.30 7.83 0.30 N 36 1 N1 B DC 9 ? ? "C1'" B DC 9 ? ? "C2'" B DC 9 ? ? 122.87 114.30 8.57 1.40 N 37 1 "O4'" B DC 9 ? ? "C1'" B DC 9 ? ? N1 B DC 9 ? ? 94.08 108.00 -13.92 0.70 N 38 1 NE A ARG 243 ? ? CZ A ARG 243 ? ? NH1 A ARG 243 ? ? 125.30 120.30 5.00 0.50 N 39 1 NE A ARG 243 ? ? CZ A ARG 243 ? ? NH2 A ARG 243 ? ? 116.23 120.30 -4.07 0.50 N 40 1 NE A ARG 249 ? ? CZ A ARG 249 ? ? NH2 A ARG 249 ? ? 117.18 120.30 -3.12 0.50 N 41 1 CA A LYS 256 ? ? CB A LYS 256 ? ? CG A LYS 256 ? ? 126.72 113.40 13.32 2.20 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 229 ? ? -27.35 -48.66 2 1 LEU A 277 ? ? 178.94 -39.80 3 1 GLU A 280 ? ? 161.99 -13.76 # _pdbx_entry_details.entry_id 1DGC _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;AMINO ACIDS NUMBERING (RESIDUE NUMBER) CORRESPONDS TO THE 281 AMINO ACIDS OF INTACT GCN4. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ILE 220 ? B ILE 1 2 1 Y 1 A VAL 221 ? B VAL 2 3 1 Y 1 A PRO 222 ? B PRO 3 4 1 Y 1 A GLU 223 ? B GLU 4 5 1 Y 1 A SER 224 ? B SER 5 6 1 Y 1 A SER 225 ? B SER 6 7 1 Y 1 A ASP 226 ? B ASP 7 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HIS N N N N 266 HIS CA C N S 267 HIS C C N N 268 HIS O O N N 269 HIS CB C N N 270 HIS CG C Y N 271 HIS ND1 N Y N 272 HIS CD2 C Y N 273 HIS CE1 C Y N 274 HIS NE2 N Y N 275 HIS OXT O N N 276 HIS H H N N 277 HIS H2 H N N 278 HIS HA H N N 279 HIS HB2 H N N 280 HIS HB3 H N N 281 HIS HD1 H N N 282 HIS HD2 H N N 283 HIS HE1 H N N 284 HIS HE2 H N N 285 HIS HXT H N N 286 ILE N N N N 287 ILE CA C N S 288 ILE C C N N 289 ILE O O N N 290 ILE CB C N S 291 ILE CG1 C N N 292 ILE CG2 C N N 293 ILE CD1 C N N 294 ILE OXT O N N 295 ILE H H N N 296 ILE H2 H N N 297 ILE HA H N N 298 ILE HB H N N 299 ILE HG12 H N N 300 ILE HG13 H N N 301 ILE HG21 H N N 302 ILE HG22 H N N 303 ILE HG23 H N N 304 ILE HD11 H N N 305 ILE HD12 H N N 306 ILE HD13 H N N 307 ILE HXT H N N 308 LEU N N N N 309 LEU CA C N S 310 LEU C C N N 311 LEU O O N N 312 LEU CB C N N 313 LEU CG C N N 314 LEU CD1 C N N 315 LEU CD2 C N N 316 LEU OXT O N N 317 LEU H H N N 318 LEU H2 H N N 319 LEU HA H N N 320 LEU HB2 H N N 321 LEU HB3 H N N 322 LEU HG H N N 323 LEU HD11 H N N 324 LEU HD12 H N N 325 LEU HD13 H N N 326 LEU HD21 H N N 327 LEU HD22 H N N 328 LEU HD23 H N N 329 LEU HXT H N N 330 LYS N N N N 331 LYS CA C N S 332 LYS C C N N 333 LYS O O N N 334 LYS CB C N N 335 LYS CG C N N 336 LYS CD C N N 337 LYS CE C N N 338 LYS NZ N N N 339 LYS OXT O N N 340 LYS H H N N 341 LYS H2 H N N 342 LYS HA H N N 343 LYS HB2 H N N 344 LYS HB3 H N N 345 LYS HG2 H N N 346 LYS HG3 H N N 347 LYS HD2 H N N 348 LYS HD3 H N N 349 LYS HE2 H N N 350 LYS HE3 H N N 351 LYS HZ1 H N N 352 LYS HZ2 H N N 353 LYS HZ3 H N N 354 LYS HXT H N N 355 MET N N N N 356 MET CA C N S 357 MET C C N N 358 MET O O N N 359 MET CB C N N 360 MET CG C N N 361 MET SD S N N 362 MET CE C N N 363 MET OXT O N N 364 MET H H N N 365 MET H2 H N N 366 MET HA H N N 367 MET HB2 H N N 368 MET HB3 H N N 369 MET HG2 H N N 370 MET HG3 H N N 371 MET HE1 H N N 372 MET HE2 H N N 373 MET HE3 H N N 374 MET HXT H N N 375 PRO N N N N 376 PRO CA C N S 377 PRO C C N N 378 PRO O O N N 379 PRO CB C N N 380 PRO CG C N N 381 PRO CD C N N 382 PRO OXT O N N 383 PRO H H N N 384 PRO HA H N N 385 PRO HB2 H N N 386 PRO HB3 H N N 387 PRO HG2 H N N 388 PRO HG3 H N N 389 PRO HD2 H N N 390 PRO HD3 H N N 391 PRO HXT H N N 392 SER N N N N 393 SER CA C N S 394 SER C C N N 395 SER O O N N 396 SER CB C N N 397 SER OG O N N 398 SER OXT O N N 399 SER H H N N 400 SER H2 H N N 401 SER HA H N N 402 SER HB2 H N N 403 SER HB3 H N N 404 SER HG H N N 405 SER HXT H N N 406 THR N N N N 407 THR CA C N S 408 THR C C N N 409 THR O O N N 410 THR CB C N R 411 THR OG1 O N N 412 THR CG2 C N N 413 THR OXT O N N 414 THR H H N N 415 THR H2 H N N 416 THR HA H N N 417 THR HB H N N 418 THR HG1 H N N 419 THR HG21 H N N 420 THR HG22 H N N 421 THR HG23 H N N 422 THR HXT H N N 423 TYR N N N N 424 TYR CA C N S 425 TYR C C N N 426 TYR O O N N 427 TYR CB C N N 428 TYR CG C Y N 429 TYR CD1 C Y N 430 TYR CD2 C Y N 431 TYR CE1 C Y N 432 TYR CE2 C Y N 433 TYR CZ C Y N 434 TYR OH O N N 435 TYR OXT O N N 436 TYR H H N N 437 TYR H2 H N N 438 TYR HA H N N 439 TYR HB2 H N N 440 TYR HB3 H N N 441 TYR HD1 H N N 442 TYR HD2 H N N 443 TYR HE1 H N N 444 TYR HE2 H N N 445 TYR HH H N N 446 TYR HXT H N N 447 VAL N N N N 448 VAL CA C N S 449 VAL C C N N 450 VAL O O N N 451 VAL CB C N N 452 VAL CG1 C N N 453 VAL CG2 C N N 454 VAL OXT O N N 455 VAL H H N N 456 VAL H2 H N N 457 VAL HA H N N 458 VAL HB H N N 459 VAL HG11 H N N 460 VAL HG12 H N N 461 VAL HG13 H N N 462 VAL HG21 H N N 463 VAL HG22 H N N 464 VAL HG23 H N N 465 VAL HXT H N N 466 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 ILE N CA sing N N 286 ILE N H sing N N 287 ILE N H2 sing N N 288 ILE CA C sing N N 289 ILE CA CB sing N N 290 ILE CA HA sing N N 291 ILE C O doub N N 292 ILE C OXT sing N N 293 ILE CB CG1 sing N N 294 ILE CB CG2 sing N N 295 ILE CB HB sing N N 296 ILE CG1 CD1 sing N N 297 ILE CG1 HG12 sing N N 298 ILE CG1 HG13 sing N N 299 ILE CG2 HG21 sing N N 300 ILE CG2 HG22 sing N N 301 ILE CG2 HG23 sing N N 302 ILE CD1 HD11 sing N N 303 ILE CD1 HD12 sing N N 304 ILE CD1 HD13 sing N N 305 ILE OXT HXT sing N N 306 LEU N CA sing N N 307 LEU N H sing N N 308 LEU N H2 sing N N 309 LEU CA C sing N N 310 LEU CA CB sing N N 311 LEU CA HA sing N N 312 LEU C O doub N N 313 LEU C OXT sing N N 314 LEU CB CG sing N N 315 LEU CB HB2 sing N N 316 LEU CB HB3 sing N N 317 LEU CG CD1 sing N N 318 LEU CG CD2 sing N N 319 LEU CG HG sing N N 320 LEU CD1 HD11 sing N N 321 LEU CD1 HD12 sing N N 322 LEU CD1 HD13 sing N N 323 LEU CD2 HD21 sing N N 324 LEU CD2 HD22 sing N N 325 LEU CD2 HD23 sing N N 326 LEU OXT HXT sing N N 327 LYS N CA sing N N 328 LYS N H sing N N 329 LYS N H2 sing N N 330 LYS CA C sing N N 331 LYS CA CB sing N N 332 LYS CA HA sing N N 333 LYS C O doub N N 334 LYS C OXT sing N N 335 LYS CB CG sing N N 336 LYS CB HB2 sing N N 337 LYS CB HB3 sing N N 338 LYS CG CD sing N N 339 LYS CG HG2 sing N N 340 LYS CG HG3 sing N N 341 LYS CD CE sing N N 342 LYS CD HD2 sing N N 343 LYS CD HD3 sing N N 344 LYS CE NZ sing N N 345 LYS CE HE2 sing N N 346 LYS CE HE3 sing N N 347 LYS NZ HZ1 sing N N 348 LYS NZ HZ2 sing N N 349 LYS NZ HZ3 sing N N 350 LYS OXT HXT sing N N 351 MET N CA sing N N 352 MET N H sing N N 353 MET N H2 sing N N 354 MET CA C sing N N 355 MET CA CB sing N N 356 MET CA HA sing N N 357 MET C O doub N N 358 MET C OXT sing N N 359 MET CB CG sing N N 360 MET CB HB2 sing N N 361 MET CB HB3 sing N N 362 MET CG SD sing N N 363 MET CG HG2 sing N N 364 MET CG HG3 sing N N 365 MET SD CE sing N N 366 MET CE HE1 sing N N 367 MET CE HE2 sing N N 368 MET CE HE3 sing N N 369 MET OXT HXT sing N N 370 PRO N CA sing N N 371 PRO N CD sing N N 372 PRO N H sing N N 373 PRO CA C sing N N 374 PRO CA CB sing N N 375 PRO CA HA sing N N 376 PRO C O doub N N 377 PRO C OXT sing N N 378 PRO CB CG sing N N 379 PRO CB HB2 sing N N 380 PRO CB HB3 sing N N 381 PRO CG CD sing N N 382 PRO CG HG2 sing N N 383 PRO CG HG3 sing N N 384 PRO CD HD2 sing N N 385 PRO CD HD3 sing N N 386 PRO OXT HXT sing N N 387 SER N CA sing N N 388 SER N H sing N N 389 SER N H2 sing N N 390 SER CA C sing N N 391 SER CA CB sing N N 392 SER CA HA sing N N 393 SER C O doub N N 394 SER C OXT sing N N 395 SER CB OG sing N N 396 SER CB HB2 sing N N 397 SER CB HB3 sing N N 398 SER OG HG sing N N 399 SER OXT HXT sing N N 400 THR N CA sing N N 401 THR N H sing N N 402 THR N H2 sing N N 403 THR CA C sing N N 404 THR CA CB sing N N 405 THR CA HA sing N N 406 THR C O doub N N 407 THR C OXT sing N N 408 THR CB OG1 sing N N 409 THR CB CG2 sing N N 410 THR CB HB sing N N 411 THR OG1 HG1 sing N N 412 THR CG2 HG21 sing N N 413 THR CG2 HG22 sing N N 414 THR CG2 HG23 sing N N 415 THR OXT HXT sing N N 416 TYR N CA sing N N 417 TYR N H sing N N 418 TYR N H2 sing N N 419 TYR CA C sing N N 420 TYR CA CB sing N N 421 TYR CA HA sing N N 422 TYR C O doub N N 423 TYR C OXT sing N N 424 TYR CB CG sing N N 425 TYR CB HB2 sing N N 426 TYR CB HB3 sing N N 427 TYR CG CD1 doub Y N 428 TYR CG CD2 sing Y N 429 TYR CD1 CE1 sing Y N 430 TYR CD1 HD1 sing N N 431 TYR CD2 CE2 doub Y N 432 TYR CD2 HD2 sing N N 433 TYR CE1 CZ doub Y N 434 TYR CE1 HE1 sing N N 435 TYR CE2 CZ sing Y N 436 TYR CE2 HE2 sing N N 437 TYR CZ OH sing N N 438 TYR OH HH sing N N 439 TYR OXT HXT sing N N 440 VAL N CA sing N N 441 VAL N H sing N N 442 VAL N H2 sing N N 443 VAL CA C sing N N 444 VAL CA CB sing N N 445 VAL CA HA sing N N 446 VAL C O doub N N 447 VAL C OXT sing N N 448 VAL CB CG1 sing N N 449 VAL CB CG2 sing N N 450 VAL CB HB sing N N 451 VAL CG1 HG11 sing N N 452 VAL CG1 HG12 sing N N 453 VAL CG1 HG13 sing N N 454 VAL CG2 HG21 sing N N 455 VAL CG2 HG22 sing N N 456 VAL CG2 HG23 sing N N 457 VAL OXT HXT sing N N 458 # _ndb_struct_conf_na.entry_id 1DGC _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 A DC 19 8_775 0.107 -0.504 -0.638 -14.909 -2.446 -8.374 1 B_DG-9:DC9_B B -9 ? B 9 ? 19 1 1 A DG 3 1_555 A DC 18 8_775 -0.472 -0.713 0.337 0.953 -17.066 -1.912 2 B_DG-8:DC8_B B -8 ? B 8 ? 19 1 1 A DA 4 1_555 A DT 17 8_775 -0.223 -0.469 -0.358 -0.579 -10.974 -7.493 3 B_DA-7:DT7_B B -7 ? B 7 ? 20 1 1 A DG 5 1_555 A DC 16 8_775 -0.367 -0.352 0.218 7.442 -8.964 -1.487 4 B_DG-6:DC6_B B -6 ? B 6 ? 19 1 1 A DA 6 1_555 A DT 15 8_775 0.163 -0.307 0.685 2.703 -6.380 1.091 5 B_DA-5:DT5_B B -5 ? B 5 ? 20 1 1 A DT 7 1_555 A DA 14 8_775 0.246 -0.191 0.099 2.271 -1.735 -0.024 6 B_DT-4:DA4_B B -4 ? B 4 ? 20 1 1 A DG 8 1_555 A DC 13 8_775 0.089 -0.412 0.022 5.628 -10.251 -3.886 7 B_DG-3:DC3_B B -3 ? B 3 ? 19 1 1 A DA 9 1_555 A DT 12 8_775 -0.208 -0.297 -0.153 6.563 -13.009 -3.067 8 B_DA-2:DT2_B B -2 ? B 2 ? 20 1 1 A DC 10 1_555 A DG 11 8_775 -0.430 -0.237 0.245 -2.429 -16.490 0.862 9 B_DC-1:DG1_B B -1 ? B 1 ? 19 1 1 A DG 11 1_555 A DC 10 8_775 0.430 -0.237 0.245 2.429 -16.490 0.862 10 B_DG1:DC-1_B B 1 ? B -1 ? 19 1 1 A DT 12 1_555 A DA 9 8_775 0.208 -0.297 -0.153 -6.563 -13.009 -3.067 11 B_DT2:DA-2_B B 2 ? B -2 ? 20 1 1 A DC 13 1_555 A DG 8 8_775 -0.089 -0.412 0.022 -5.628 -10.251 -3.886 12 B_DC3:DG-3_B B 3 ? B -3 ? 19 1 1 A DA 14 1_555 A DT 7 8_775 -0.246 -0.191 0.099 -2.271 -1.735 -0.024 13 B_DA4:DT-4_B B 4 ? B -4 ? 20 1 1 A DT 15 1_555 A DA 6 8_775 -0.163 -0.307 0.685 -2.703 -6.380 1.091 14 B_DT5:DA-5_B B 5 ? B -5 ? 20 1 1 A DC 16 1_555 A DG 5 8_775 0.367 -0.352 0.218 -7.442 -8.964 -1.487 15 B_DC6:DG-6_B B 6 ? B -6 ? 19 1 1 A DT 17 1_555 A DA 4 8_775 0.223 -0.469 -0.358 0.579 -10.974 -7.493 16 B_DT7:DA-7_B B 7 ? B -7 ? 20 1 1 A DC 18 1_555 A DG 3 8_775 0.472 -0.713 0.337 -0.953 -17.066 -1.912 17 B_DC8:DG-8_B B 8 ? B -8 ? 19 1 1 A DC 19 1_555 A DG 2 8_775 -0.107 -0.504 -0.638 14.909 -2.446 -8.374 18 B_DC9:DG-9_B B 9 ? B -9 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 A DC 19 8_775 A DG 3 1_555 A DC 18 8_775 0.720 0.859 3.147 -11.859 0.573 32.623 1.360 -2.901 2.742 0.980 20.292 34.661 1 BB_DG-9DG-8:DC8DC9_BB B -9 ? B 9 ? B -8 ? B 8 ? 1 A DG 3 1_555 A DC 18 8_775 A DA 4 1_555 A DT 17 8_775 -0.586 0.131 3.457 4.785 4.062 36.687 -0.361 1.586 3.352 6.396 -7.533 37.202 2 BB_DG-8DA-7:DT7DC8_BB B -8 ? B 8 ? B -7 ? B 7 ? 1 A DA 4 1_555 A DT 17 8_775 A DG 5 1_555 A DC 16 8_775 0.132 -0.222 3.245 -5.304 5.892 29.591 -1.566 -1.280 3.075 11.283 10.157 30.612 3 BB_DA-7DG-6:DC6DT7_BB B -7 ? B 7 ? B -6 ? B 6 ? 1 A DG 5 1_555 A DC 16 8_775 A DA 6 1_555 A DT 15 8_775 0.062 -0.165 3.440 -5.074 -1.690 43.501 -0.052 -0.591 3.416 -2.270 6.815 43.813 4 BB_DG-6DA-5:DT5DC6_BB B -6 ? B 6 ? B -5 ? B 5 ? 1 A DA 6 1_555 A DT 15 8_775 A DT 7 1_555 A DA 14 8_775 -0.073 -0.912 3.463 4.156 -0.883 30.050 -1.554 1.028 3.446 -1.693 -7.966 30.342 5 BB_DA-5DT-4:DA4DT5_BB B -5 ? B 5 ? B -4 ? B 4 ? 1 A DT 7 1_555 A DA 14 8_775 A DG 8 1_555 A DC 13 8_775 -0.671 0.378 3.112 -1.997 7.846 38.965 -0.327 0.763 3.156 11.610 2.955 39.765 6 BB_DT-4DG-3:DC3DA4_BB B -4 ? B 4 ? B -3 ? B 3 ? 1 A DG 8 1_555 A DC 13 8_775 A DA 9 1_555 A DT 12 8_775 0.111 -0.098 3.458 1.836 9.124 30.015 -1.990 0.160 3.288 17.107 -3.443 31.394 7 BB_DG-3DA-2:DT2DC3_BB B -3 ? B 3 ? B -2 ? B 2 ? 1 A DA 9 1_555 A DT 12 8_775 A DC 10 1_555 A DG 11 8_775 0.042 -0.699 3.595 -4.188 -1.949 31.090 -0.886 -0.945 3.595 -3.611 7.760 31.423 8 BB_DA-2DC-1:DG1DT2_BB B -2 ? B 2 ? B -1 ? B 1 ? 1 A DC 10 1_555 A DG 11 8_775 A DG 11 1_555 A DC 10 8_775 0.000 0.233 3.465 0.000 14.392 36.768 -1.490 0.000 3.325 21.818 0.000 39.394 9 BB_DC-1DG1:DC-1DG1_BB B -1 ? B 1 ? B 1 ? B -1 ? 1 A DG 11 1_555 A DC 10 8_775 A DT 12 1_555 A DA 9 8_775 -0.042 -0.699 3.595 4.188 -1.949 31.090 -0.886 0.945 3.595 -3.611 -7.760 31.423 10 BB_DG1DT2:DA-2DC-1_BB B 1 ? B -1 ? B 2 ? B -2 ? 1 A DT 12 1_555 A DA 9 8_775 A DC 13 1_555 A DG 8 8_775 -0.111 -0.098 3.458 -1.836 9.124 30.015 -1.990 -0.160 3.288 17.107 3.443 31.394 11 BB_DT2DC3:DG-3DA-2_BB B 2 ? B -2 ? B 3 ? B -3 ? 1 A DC 13 1_555 A DG 8 8_775 A DA 14 1_555 A DT 7 8_775 0.671 0.378 3.112 1.997 7.846 38.965 -0.327 -0.763 3.156 11.610 -2.955 39.765 12 BB_DC3DA4:DT-4DG-3_BB B 3 ? B -3 ? B 4 ? B -4 ? 1 A DA 14 1_555 A DT 7 8_775 A DT 15 1_555 A DA 6 8_775 0.073 -0.912 3.463 -4.157 -0.883 30.050 -1.554 -1.028 3.446 -1.693 7.966 30.343 13 BB_DA4DT5:DA-5DT-4_BB B 4 ? B -4 ? B 5 ? B -5 ? 1 A DT 15 1_555 A DA 6 8_775 A DC 16 1_555 A DG 5 8_775 -0.062 -0.165 3.440 5.074 -1.690 43.501 -0.052 0.591 3.416 -2.270 -6.815 43.813 14 BB_DT5DC6:DG-6DA-5_BB B 5 ? B -5 ? B 6 ? B -6 ? 1 A DC 16 1_555 A DG 5 8_775 A DT 17 1_555 A DA 4 8_775 -0.132 -0.222 3.245 5.304 5.892 29.591 -1.566 1.280 3.075 11.283 -10.157 30.612 15 BB_DC6DT7:DA-7DG-6_BB B 6 ? B -6 ? B 7 ? B -7 ? 1 A DT 17 1_555 A DA 4 8_775 A DC 18 1_555 A DG 3 8_775 0.586 0.131 3.457 -4.785 4.062 36.687 -0.361 -1.586 3.352 6.396 7.533 37.202 16 BB_DT7DC8:DG-8DA-7_BB B 7 ? B -7 ? B 8 ? B -8 ? 1 A DC 18 1_555 A DG 3 8_775 A DC 19 1_555 A DG 2 8_775 -0.720 0.859 3.147 11.859 0.573 32.623 1.360 2.901 2.742 0.980 -20.292 34.661 17 BB_DC8DC9:DG-9DG-8_BB B 8 ? B -8 ? B 9 ? B -9 ? # _atom_sites.entry_id 1DGC _atom_sites.fract_transf_matrix[1][1] 0.017047 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017047 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011539 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_