data_1DRZ # _entry.id 1DRZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DRZ pdb_00001drz 10.2210/pdb1drz/pdb NDB PR0005 ? ? RCSB RCSB008172 ? ? WWPDB D_1000008172 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DRZ _pdbx_database_status.recvd_initial_deposition_date 1998-09-01 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal ;Ferre-D'Amare, A.R. ; 1 'Zhou, K.' 2 'Doudna, J.A.' 3 # _citation.id primary _citation.title 'Crystal structure of a hepatitis delta virus ribozyme.' _citation.journal_abbrev Nature _citation.journal_volume 395 _citation.page_first 567 _citation.page_last 574 _citation.year 1998 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9783582 _citation.pdbx_database_id_DOI 10.1038/26912 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary ;Ferre-D'Amare, A.R. ; 1 ? primary 'Zhou, K.' 2 ? primary 'Doudna, J.A.' 3 ? # _cell.entry_id 1DRZ _cell.length_a 109.350 _cell.length_b 109.350 _cell.length_c 190.680 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DRZ _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 155 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA (HEPATITIS DELTA VIRUS GENOMIC RIBOZYME)' 23179.793 1 ? ? 'RIBOZYME DOMAIN' 'RNA IS THE PRODUCT OF SELF-CLEAVAGE. NUCLEOTIDES 146 - 159 INCLUSIVE ARE AN ENGINEERED COGNATE BINDING SITE FOR THE U1A PROTEIN' 2 polymer man 'PROTEIN (U1 SMALL RIBONUCLEOPROTEIN A)' 11396.701 1 ? 'Y31H, Q36R' 'RNA BINDING DOMAIN' 'SELENOMETHIONYL PROTEIN' 3 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 5 water nat water 18.015 19 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'HDV RIBOZYME, DELTA RIBOZYME' 2 'U1A-RBD, U1SNRNP' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGCGAAUGGGAC GGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGCGAAUGGGAC B ? 2 'polypeptide(L)' no yes ;AVPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLK(MSE)RGQAFVIFKEVSSATNALRS(MSE)Q GFPFYDKP(MSE)RIQYAKTDSDIIAK(MSE)K ; ;AVPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP MRIQYAKTDSDIIAKMK ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 C n 1 5 G n 1 6 G n 1 7 C n 1 8 A n 1 9 U n 1 10 G n 1 11 G n 1 12 U n 1 13 C n 1 14 C n 1 15 C n 1 16 A n 1 17 G n 1 18 C n 1 19 C n 1 20 U n 1 21 C n 1 22 C n 1 23 U n 1 24 C n 1 25 G n 1 26 C n 1 27 U n 1 28 G n 1 29 G n 1 30 C n 1 31 G n 1 32 C n 1 33 C n 1 34 G n 1 35 G n 1 36 C n 1 37 U n 1 38 G n 1 39 G n 1 40 G n 1 41 C n 1 42 A n 1 43 A n 1 44 C n 1 45 A n 1 46 C n 1 47 C n 1 48 A n 1 49 U n 1 50 U n 1 51 G n 1 52 C n 1 53 A n 1 54 C n 1 55 U n 1 56 C n 1 57 C n 1 58 G n 1 59 G n 1 60 U n 1 61 G n 1 62 G n 1 63 C n 1 64 G n 1 65 A n 1 66 A n 1 67 U n 1 68 G n 1 69 G n 1 70 G n 1 71 A n 1 72 C n 2 1 ALA n 2 2 VAL n 2 3 PRO n 2 4 GLU n 2 5 THR n 2 6 ARG n 2 7 PRO n 2 8 ASN n 2 9 HIS n 2 10 THR n 2 11 ILE n 2 12 TYR n 2 13 ILE n 2 14 ASN n 2 15 ASN n 2 16 LEU n 2 17 ASN n 2 18 GLU n 2 19 LYS n 2 20 ILE n 2 21 LYS n 2 22 LYS n 2 23 ASP n 2 24 GLU n 2 25 LEU n 2 26 LYS n 2 27 LYS n 2 28 SER n 2 29 LEU n 2 30 HIS n 2 31 ALA n 2 32 ILE n 2 33 PHE n 2 34 SER n 2 35 ARG n 2 36 PHE n 2 37 GLY n 2 38 GLN n 2 39 ILE n 2 40 LEU n 2 41 ASP n 2 42 ILE n 2 43 LEU n 2 44 VAL n 2 45 SER n 2 46 ARG n 2 47 SER n 2 48 LEU n 2 49 LYS n 2 50 MSE n 2 51 ARG n 2 52 GLY n 2 53 GLN n 2 54 ALA n 2 55 PHE n 2 56 VAL n 2 57 ILE n 2 58 PHE n 2 59 LYS n 2 60 GLU n 2 61 VAL n 2 62 SER n 2 63 SER n 2 64 ALA n 2 65 THR n 2 66 ASN n 2 67 ALA n 2 68 LEU n 2 69 ARG n 2 70 SER n 2 71 MSE n 2 72 GLN n 2 73 GLY n 2 74 PHE n 2 75 PRO n 2 76 PHE n 2 77 TYR n 2 78 ASP n 2 79 LYS n 2 80 PRO n 2 81 MSE n 2 82 ARG n 2 83 ILE n 2 84 GLN n 2 85 TYR n 2 86 ALA n 2 87 LYS n 2 88 THR n 2 89 ASP n 2 90 SER n 2 91 ASP n 2 92 ILE n 2 93 ILE n 2 94 ALA n 2 95 LYS n 2 96 MSE n 2 97 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? Deltavirus ? ? ? ? ? ? ? 'Hepatitis delta virus' 12475 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? PDU9 ? ;RNA PRODUCED BY IN VITRO RUN-OFF TRANSCRIPTION WITH BACTERIOPHAGE T7 RNA POLYMERASE FROM PLASMID DNA LINEARIZED WITH RESTRICTION ENZYME BSAI. T7 TRANSCRIPT ; 2 1 sample ? ? ? human Homo ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? B834 ? ? ? ? ? ? ? ? ? ? ? T7 ? '(A1-98 Y31H Q36R) T7 PLASMID EXPRESSED IN E. COLI STRAIN B834 GROWN IN MINIMAL MEDIUM SUPPLEMENTED WITH SELENOMETHIONINE;' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP SNRPA_HUMAN 2 ? ? P09012 ? 2 PDB 1DRZ 1 ? ? 1DRZ ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1DRZ A 1 ? 97 ? P09012 2 ? 98 ? 2 98 2 2 1DRZ B 1 ? 72 ? 1DRZ 101 ? 172 ? 101 172 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1DRZ HIS A 30 ? UNP P09012 TYR 31 'engineered mutation' 31 1 1 1DRZ ARG A 35 ? UNP P09012 GLN 36 'engineered mutation' 36 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1DRZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 3 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.17 _exptl_crystal.density_percent_sol 67 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'pH 7.0' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type RIGAKU _diffrn_detector.pdbx_collection_date 1998-03-15 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator SI _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9761 1.0 2 0.9794 1.0 3 0.9792 1.0 4 1.1390 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9761, 0.9794, 0.9792, 1.1390' # _reflns.entry_id 1DRZ _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 41.3 _reflns.d_resolution_high 2.9 _reflns.number_obs 17817 _reflns.number_all 17817 _reflns.percent_possible_obs 95.7 _reflns.pdbx_Rmerge_I_obs 0.0650000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 21.7 _reflns.B_iso_Wilson_estimate 47.8 _reflns.pdbx_redundancy 3.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.9 _reflns_shell.d_res_low 3.0 _reflns_shell.percent_possible_all 97.6 _reflns_shell.Rmerge_I_obs 0.3180000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.2 _reflns_shell.pdbx_redundancy 3.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1DRZ _refine.ls_number_reflns_obs 18903 _refine.ls_number_reflns_all 18903 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF 2082995.34 _refine.ls_d_res_low 20 _refine.ls_d_res_high 2.3 _refine.ls_percent_reflns_obs 95.6 _refine.ls_R_factor_obs 0.2810000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2810000 _refine.ls_R_factor_R_free 0.2840000 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 1861 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 76.2 _refine.aniso_B[1][1] -10.0 _refine.aniso_B[2][2] -10.0 _refine.aniso_B[3][3] 20.09 _refine.aniso_B[1][2] 0.08 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.336 _refine.solvent_model_param_bsol 43.30 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1DRZ _refine_analyze.Luzzati_coordinate_error_obs 0.47 _refine_analyze.Luzzati_sigma_a_obs 0.58 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.49 _refine_analyze.Luzzati_sigma_a_free 0.52 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 802 _refine_hist.pdbx_number_atoms_nucleic_acid 1532 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 19 _refine_hist.number_atoms_total 2366 _refine_hist.d_res_high 2.3 _refine_hist.d_res_low 20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 20.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.93 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 0.44 1.00 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 0.80 1.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 0.48 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 0.73 2.00 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.44 _refine_ls_shell.number_reflns_R_work 2841 _refine_ls_shell.R_factor_R_work 0.4260000 _refine_ls_shell.percent_reflns_obs 96.5 _refine_ls_shell.R_factor_R_free 0.3990000 _refine_ls_shell.R_factor_R_free_error 0.023 _refine_ls_shell.percent_reflns_R_free 9.4 _refine_ls_shell.number_reflns_R_free 295 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1DRZ _struct.title 'U1A SPLICEOSOMAL PROTEIN/HEPATITIS DELTA VIRUS GENOMIC RIBOZYME COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DRZ _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/RNA' _struct_keywords.text 'CATALYTIC RNA, RIBOZYME, RNA-BINDING PROTEIN, U1A, HDV, RNA BINDING PROTEIN-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS B 22 ? PHE B 36 ? LYS A 23 PHE A 37 1 ? 15 HELX_P HELX_P2 2 VAL B 61 ? ARG B 69 ? VAL A 62 ARG A 70 1 ? 9 HELX_P HELX_P3 3 ASP B 91 ? ALA B 94 ? ASP A 92 ALA A 95 1 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B LYS 49 C ? ? ? 1_555 B MSE 50 N ? ? A LYS 50 A MSE 51 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? B MSE 50 C ? ? ? 1_555 B ARG 51 N ? ? A MSE 51 A ARG 52 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? B SER 70 C A ? ? 1_555 B MSE 71 N ? ? A SER 71 A MSE 72 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? B SER 70 C B ? ? 1_555 B MSE 71 N ? ? A SER 71 A MSE 72 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale5 covale both ? B MSE 71 C ? ? ? 1_555 B GLN 72 N ? ? A MSE 72 A GLN 73 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale6 covale both ? B PRO 80 C ? ? ? 1_555 B MSE 81 N ? ? A PRO 81 A MSE 82 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale7 covale both ? B MSE 81 C ? ? ? 1_555 B ARG 82 N ? ? A MSE 82 A ARG 83 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale8 covale both ? B LYS 95 C ? ? ? 1_555 B MSE 96 N ? ? A LYS 96 A MSE 97 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale9 covale both ? B MSE 96 C ? ? ? 1_555 B LYS 97 N ? ? A MSE 97 A LYS 98 1_555 ? ? ? ? ? ? ? 1.332 ? ? metalc1 metalc ? ? A G 6 OP2 ? ? ? 1_555 E MG . MG ? ? B G 106 B MG 403 1_555 ? ? ? ? ? ? ? 2.678 ? ? metalc2 metalc ? ? A G 6 "O5'" ? ? ? 1_555 E MG . MG ? ? B G 106 B MG 403 1_555 ? ? ? ? ? ? ? 2.882 ? ? metalc3 metalc ? ? A C 7 OP2 ? ? ? 1_555 E MG . MG ? ? B C 107 B MG 403 1_555 ? ? ? ? ? ? ? 2.855 ? ? metalc4 metalc ? ? A G 70 O6 ? ? ? 1_555 D MG . MG ? ? B G 170 B MG 402 1_555 ? ? ? ? ? ? ? 3.027 ? ? metalc5 metalc ? ? A G 70 N7 ? ? ? 1_555 D MG . MG ? ? B G 170 B MG 402 1_555 ? ? ? ? ? ? ? 2.569 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A U 37 O2 ? ? B G 101 B U 137 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog2 hydrog ? ? A G 1 O6 ? ? ? 1_555 A U 37 N3 ? ? B G 101 B U 137 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 36 N3 ? ? B G 102 B C 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 36 O2 ? ? B G 102 B C 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 36 N4 ? ? B G 102 B C 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 35 N1 ? ? B C 103 B G 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 35 O6 ? ? B C 103 B G 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 35 N2 ? ? B C 103 B G 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 34 N1 ? ? B C 104 B G 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 34 O6 ? ? B C 104 B G 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 34 N2 ? ? B C 104 B G 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 33 N3 ? ? B G 105 B C 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 33 O2 ? ? B G 105 B C 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 33 N4 ? ? B G 105 B C 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 32 N3 ? ? B G 106 B C 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 32 O2 ? ? B G 106 B C 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 32 N4 ? ? B G 106 B C 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 31 N1 ? ? B C 107 B G 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 31 O6 ? ? B C 107 B G 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 31 N2 ? ? B C 107 B G 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 72 N3 ? ? B G 111 B C 172 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 72 O2 ? ? B G 111 B C 172 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 72 N4 ? ? B G 111 B C 172 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 71 N1 ? ? B U 112 B A 171 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 71 N6 ? ? B U 112 B A 171 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 70 N1 ? ? B C 113 B G 170 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 70 O6 ? ? B C 113 B G 170 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 70 N2 ? ? B C 113 B G 170 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 69 N1 ? ? B C 114 B G 169 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 69 O6 ? ? B C 114 B G 169 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 69 N2 ? ? B C 114 B G 169 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 68 N1 ? ? B C 115 B G 168 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 68 O6 ? ? B C 115 B G 168 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 68 N2 ? ? B C 115 B G 168 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 16 N1 ? ? ? 1_555 A U 67 N3 ? ? B A 116 B U 167 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog36 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 30 N3 ? ? B G 117 B C 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 30 O2 ? ? B G 117 B C 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 30 N4 ? ? B G 117 B C 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 29 N1 ? ? B C 118 B G 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 29 O6 ? ? B C 118 B G 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 29 N2 ? ? B C 118 B G 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 28 N1 ? ? B C 119 B G 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 28 O6 ? ? B C 119 B G 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 28 N2 ? ? B C 119 B G 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 39 N1 ? ? B C 121 B G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 39 O6 ? ? B C 121 B G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 39 N2 ? ? B C 121 B G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 21 O2 ? ? ? 1_555 A A 42 N6 ? ? B C 121 B A 142 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog49 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 38 N1 ? ? B C 122 B G 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 38 O6 ? ? B C 122 B G 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 38 N2 ? ? B C 122 B G 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 29 N2 ? ? ? 1_555 A A 66 N3 ? ? B G 129 B A 166 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog53 hydrog ? ? A G 40 N3 ? ? ? 1_555 A A 42 N6 ? ? B G 140 B A 142 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog54 hydrog ? ? A G 40 N2 ? ? ? 1_555 A G 62 O6 ? ? B G 140 B G 162 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog55 hydrog ? ? A C 41 N4 ? ? ? 1_555 A G 61 N7 ? ? B C 141 B G 161 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog56 hydrog ? ? A A 43 N1 ? ? ? 1_555 A G 62 N1 ? ? B A 143 B G 162 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog57 hydrog ? ? A A 43 N6 ? ? ? 1_555 A G 62 O6 ? ? B A 143 B G 162 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog58 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 61 N1 ? ? B C 144 B G 161 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 61 O6 ? ? B C 144 B G 161 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 61 N2 ? ? B C 144 B G 161 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A A 45 N1 ? ? ? 1_555 A U 60 N3 ? ? B A 145 B U 160 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A A 45 N6 ? ? ? 1_555 A U 60 O4 ? ? B A 145 B U 160 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 46 N3 ? ? ? 1_555 A G 59 N1 ? ? B C 146 B G 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 46 N4 ? ? ? 1_555 A G 59 O6 ? ? B C 146 B G 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 46 O2 ? ? ? 1_555 A G 59 N2 ? ? B C 146 B G 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 47 N3 ? ? ? 1_555 A G 58 N1 ? ? B C 147 B G 158 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 47 N4 ? ? ? 1_555 A G 58 O6 ? ? B C 147 B G 158 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 47 O2 ? ? ? 1_555 A G 58 N2 ? ? B C 147 B G 158 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A U 55 O2 ? ? ? 1_555 A C 56 N4 ? ? B U 155 B C 156 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE B 83 ? TYR B 85 ? ILE A 84 TYR A 86 A 2 THR B 10 ? ILE B 13 ? THR A 11 ILE A 14 A 3 ALA B 54 ? PHE B 58 ? ALA A 55 PHE A 59 A 4 ILE B 39 ? VAL B 44 ? ILE A 40 VAL A 45 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN B 84 ? O GLN A 85 N TYR B 12 ? N TYR A 13 A 2 3 O ILE B 11 ? O ILE A 12 N VAL B 56 ? N VAL A 57 A 3 4 O PHE B 55 ? O PHE A 56 N LEU B 43 ? N LEU A 44 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B MG 402 ? 2 'BINDING SITE FOR RESIDUE MG B 402' AC2 Software B MG 403 ? 2 'BINDING SITE FOR RESIDUE MG B 403' AC3 Software A SO4 404 ? 2 'BINDING SITE FOR RESIDUE SO4 A 404' AC4 Software A SO4 405 ? 3 'BINDING SITE FOR RESIDUE SO4 A 405' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 G A 69 ? G B 169 . ? 1_555 ? 2 AC1 2 G A 70 ? G B 170 . ? 1_555 ? 3 AC2 2 G A 6 ? G B 106 . ? 1_555 ? 4 AC2 2 C A 7 ? C B 107 . ? 1_555 ? 5 AC3 2 ARG B 35 ? ARG A 36 . ? 1_555 ? 6 AC3 2 SER B 70 ? SER A 71 . ? 1_555 ? 7 AC4 3 SER B 62 ? SER A 63 . ? 1_555 ? 8 AC4 3 ASN B 66 ? ASN A 67 . ? 1_555 ? 9 AC4 3 HOH I . ? HOH A 314 . ? 1_555 ? # _database_PDB_matrix.entry_id 1DRZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1DRZ _atom_sites.fract_transf_matrix[1][1] 0.009145 _atom_sites.fract_transf_matrix[1][2] 0.005280 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010560 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005244 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 101 101 G G B . n A 1 2 G 2 102 102 G G B . n A 1 3 C 3 103 103 C C B . n A 1 4 C 4 104 104 C C B . n A 1 5 G 5 105 105 G G B . n A 1 6 G 6 106 106 G G B . n A 1 7 C 7 107 107 C C B . n A 1 8 A 8 108 108 A A B . n A 1 9 U 9 109 109 U U B . n A 1 10 G 10 110 110 G G B . n A 1 11 G 11 111 111 G G B . n A 1 12 U 12 112 112 U U B . n A 1 13 C 13 113 113 C C B . n A 1 14 C 14 114 114 C C B . n A 1 15 C 15 115 115 C C B . n A 1 16 A 16 116 116 A A B . n A 1 17 G 17 117 117 G G B . n A 1 18 C 18 118 118 C C B . n A 1 19 C 19 119 119 C C B . n A 1 20 U 20 120 120 U U B . n A 1 21 C 21 121 121 C C B . n A 1 22 C 22 122 122 C C B . n A 1 23 U 23 123 123 U U B . n A 1 24 C 24 124 124 C C B . n A 1 25 G 25 125 125 G G B . n A 1 26 C 26 126 126 C C B . n A 1 27 U 27 127 127 U U B . n A 1 28 G 28 128 128 G G B . n A 1 29 G 29 129 129 G G B . n A 1 30 C 30 130 130 C C B . n A 1 31 G 31 131 131 G G B . n A 1 32 C 32 132 132 C C B . n A 1 33 C 33 133 133 C C B . n A 1 34 G 34 134 134 G G B . n A 1 35 G 35 135 135 G G B . n A 1 36 C 36 136 136 C C B . n A 1 37 U 37 137 137 U U B . n A 1 38 G 38 138 138 G G B . n A 1 39 G 39 139 139 G G B . n A 1 40 G 40 140 140 G G B . n A 1 41 C 41 141 141 C C B . n A 1 42 A 42 142 142 A A B . n A 1 43 A 43 143 143 A A B . n A 1 44 C 44 144 144 C C B . n A 1 45 A 45 145 145 A A B . n A 1 46 C 46 146 146 C C B . n A 1 47 C 47 147 147 C C B . n A 1 48 A 48 148 148 A A B . n A 1 49 U 49 149 149 U U B . n A 1 50 U 50 150 150 U U B . n A 1 51 G 51 151 151 G G B . n A 1 52 C 52 152 152 C C B . n A 1 53 A 53 153 153 A A B . n A 1 54 C 54 154 154 C C B . n A 1 55 U 55 155 155 U U B . n A 1 56 C 56 156 156 C C B . n A 1 57 C 57 157 157 C C B . n A 1 58 G 58 158 158 G G B . n A 1 59 G 59 159 159 G G B . n A 1 60 U 60 160 160 U U B . n A 1 61 G 61 161 161 G G B . n A 1 62 G 62 162 162 G G B . n A 1 63 C 63 163 163 C C B . n A 1 64 G 64 164 164 G G B . n A 1 65 A 65 165 165 A A B . n A 1 66 A 66 166 166 A A B . n A 1 67 U 67 167 167 U U B . n A 1 68 G 68 168 168 G G B . n A 1 69 G 69 169 169 G G B . n A 1 70 G 70 170 170 G G B . n A 1 71 A 71 171 171 A A B . n A 1 72 C 72 172 172 C C B . n B 2 1 ALA 1 2 ? ? ? A . n B 2 2 VAL 2 3 ? ? ? A . n B 2 3 PRO 3 4 4 PRO PRO A . n B 2 4 GLU 4 5 5 GLU GLU A . n B 2 5 THR 5 6 6 THR THR A . n B 2 6 ARG 6 7 7 ARG ARG A . n B 2 7 PRO 7 8 8 PRO PRO A . n B 2 8 ASN 8 9 9 ASN ASN A . n B 2 9 HIS 9 10 10 HIS HIS A . n B 2 10 THR 10 11 11 THR THR A . n B 2 11 ILE 11 12 12 ILE ILE A . n B 2 12 TYR 12 13 13 TYR TYR A . n B 2 13 ILE 13 14 14 ILE ILE A . n B 2 14 ASN 14 15 15 ASN ASN A . n B 2 15 ASN 15 16 16 ASN ASN A . n B 2 16 LEU 16 17 17 LEU LEU A . n B 2 17 ASN 17 18 18 ASN ASN A . n B 2 18 GLU 18 19 19 GLU GLU A . n B 2 19 LYS 19 20 20 LYS LYS A . n B 2 20 ILE 20 21 21 ILE ILE A . n B 2 21 LYS 21 22 22 LYS LYS A . n B 2 22 LYS 22 23 23 LYS LYS A . n B 2 23 ASP 23 24 24 ASP ASP A . n B 2 24 GLU 24 25 25 GLU GLU A . n B 2 25 LEU 25 26 26 LEU LEU A . n B 2 26 LYS 26 27 27 LYS LYS A . n B 2 27 LYS 27 28 28 LYS LYS A . n B 2 28 SER 28 29 29 SER SER A . n B 2 29 LEU 29 30 30 LEU LEU A . n B 2 30 HIS 30 31 31 HIS HIS A . n B 2 31 ALA 31 32 32 ALA ALA A . n B 2 32 ILE 32 33 33 ILE ILE A . n B 2 33 PHE 33 34 34 PHE PHE A . n B 2 34 SER 34 35 35 SER SER A . n B 2 35 ARG 35 36 36 ARG ARG A . n B 2 36 PHE 36 37 37 PHE PHE A . n B 2 37 GLY 37 38 38 GLY GLY A . n B 2 38 GLN 38 39 39 GLN GLN A . n B 2 39 ILE 39 40 40 ILE ILE A . n B 2 40 LEU 40 41 41 LEU LEU A . n B 2 41 ASP 41 42 42 ASP ASP A . n B 2 42 ILE 42 43 43 ILE ILE A . n B 2 43 LEU 43 44 44 LEU LEU A . n B 2 44 VAL 44 45 45 VAL VAL A . n B 2 45 SER 45 46 46 SER SER A . n B 2 46 ARG 46 47 47 ARG ARG A . n B 2 47 SER 47 48 48 SER SER A . n B 2 48 LEU 48 49 49 LEU LEU A . n B 2 49 LYS 49 50 50 LYS LYS A . n B 2 50 MSE 50 51 51 MSE MSE A . n B 2 51 ARG 51 52 52 ARG ARG A . n B 2 52 GLY 52 53 53 GLY GLY A . n B 2 53 GLN 53 54 54 GLN GLN A . n B 2 54 ALA 54 55 55 ALA ALA A . n B 2 55 PHE 55 56 56 PHE PHE A . n B 2 56 VAL 56 57 57 VAL VAL A . n B 2 57 ILE 57 58 58 ILE ILE A . n B 2 58 PHE 58 59 59 PHE PHE A . n B 2 59 LYS 59 60 60 LYS LYS A . n B 2 60 GLU 60 61 61 GLU GLU A . n B 2 61 VAL 61 62 62 VAL VAL A . n B 2 62 SER 62 63 63 SER SER A . n B 2 63 SER 63 64 64 SER SER A . n B 2 64 ALA 64 65 65 ALA ALA A . n B 2 65 THR 65 66 66 THR THR A . n B 2 66 ASN 66 67 67 ASN ASN A . n B 2 67 ALA 67 68 68 ALA ALA A . n B 2 68 LEU 68 69 69 LEU LEU A . n B 2 69 ARG 69 70 70 ARG ARG A . n B 2 70 SER 70 71 71 SER SER A . n B 2 71 MSE 71 72 72 MSE MSE A . n B 2 72 GLN 72 73 73 GLN GLN A . n B 2 73 GLY 73 74 74 GLY GLY A . n B 2 74 PHE 74 75 75 PHE PHE A . n B 2 75 PRO 75 76 76 PRO PRO A . n B 2 76 PHE 76 77 77 PHE PHE A . n B 2 77 TYR 77 78 78 TYR TYR A . n B 2 78 ASP 78 79 79 ASP ASP A . n B 2 79 LYS 79 80 80 LYS LYS A . n B 2 80 PRO 80 81 81 PRO PRO A . n B 2 81 MSE 81 82 82 MSE MSE A . n B 2 82 ARG 82 83 83 ARG ARG A . n B 2 83 ILE 83 84 84 ILE ILE A . n B 2 84 GLN 84 85 85 GLN GLN A . n B 2 85 TYR 85 86 86 TYR TYR A . n B 2 86 ALA 86 87 87 ALA ALA A . n B 2 87 LYS 87 88 88 LYS LYS A . n B 2 88 THR 88 89 89 THR THR A . n B 2 89 ASP 89 90 90 ASP ASP A . n B 2 90 SER 90 91 91 SER SER A . n B 2 91 ASP 91 92 92 ASP ASP A . n B 2 92 ILE 92 93 93 ILE ILE A . n B 2 93 ILE 93 94 94 ILE ILE A . n B 2 94 ALA 94 95 95 ALA ALA A . n B 2 95 LYS 95 96 96 LYS LYS A . n B 2 96 MSE 96 97 97 MSE MSE A . n B 2 97 LYS 97 98 98 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 401 401 MG MG B . D 3 MG 1 402 402 MG MG B . E 3 MG 1 403 403 MG MG B . F 4 SO4 1 404 404 SO4 SO4 A . G 4 SO4 1 405 405 SO4 SO4 A . H 5 HOH 1 305 305 HOH HOH B . H 5 HOH 2 308 308 HOH HOH B . H 5 HOH 3 309 309 HOH HOH B . H 5 HOH 4 310 310 HOH HOH B . H 5 HOH 5 316 316 HOH HOH B . H 5 HOH 6 317 317 HOH HOH B . H 5 HOH 7 318 318 HOH HOH B . H 5 HOH 8 319 319 HOH HOH B . I 5 HOH 1 301 301 HOH HOH A . I 5 HOH 2 302 302 HOH HOH A . I 5 HOH 3 303 303 HOH HOH A . I 5 HOH 4 304 304 HOH HOH A . I 5 HOH 5 306 306 HOH HOH A . I 5 HOH 6 307 307 HOH HOH A . I 5 HOH 7 311 311 HOH HOH A . I 5 HOH 8 312 312 HOH HOH A . I 5 HOH 9 313 313 HOH HOH A . I 5 HOH 10 314 314 HOH HOH A . I 5 HOH 11 315 315 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B MSE 50 A MSE 51 ? MET SELENOMETHIONINE 2 B MSE 71 A MSE 72 ? MET SELENOMETHIONINE 3 B MSE 81 A MSE 82 ? MET SELENOMETHIONINE 4 B MSE 96 A MSE 97 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A G 6 ? B G 106 ? 1_555 MG ? E MG . ? B MG 403 ? 1_555 "O5'" ? A G 6 ? B G 106 ? 1_555 53.8 ? 2 OP2 ? A G 6 ? B G 106 ? 1_555 MG ? E MG . ? B MG 403 ? 1_555 OP2 ? A C 7 ? B C 107 ? 1_555 132.1 ? 3 "O5'" ? A G 6 ? B G 106 ? 1_555 MG ? E MG . ? B MG 403 ? 1_555 OP2 ? A C 7 ? B C 107 ? 1_555 86.3 ? 4 O6 ? A G 70 ? B G 170 ? 1_555 MG ? D MG . ? B MG 402 ? 1_555 N7 ? A G 70 ? B G 170 ? 1_555 67.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-02-16 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_conn_angle 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.value' 14 4 'Structure model' '_struct_conn.pdbx_dist_value' 15 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 16 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 17 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 28 4 'Structure model' '_struct_ref_seq_dif.details' 29 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SOLVE phasing . ? 1 SHARP phasing . ? 2 CNS refinement 0.3 ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 312 ? ? 1_555 O A HOH 312 ? ? 4_555 1.00 2 1 O A HOH 303 ? ? 1_555 O A HOH 303 ? ? 4_555 1.26 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C2'" B C 122 ? ? "C3'" B C 122 ? ? "O3'" B C 122 ? ? 127.25 113.70 13.55 1.60 N 2 1 N1 B U 150 ? ? "C1'" B U 150 ? ? "C2'" B U 150 ? ? 121.84 114.00 7.84 1.30 N 3 1 "C2'" B C 152 ? ? "C3'" B C 152 ? ? "O3'" B C 152 ? ? 131.70 113.70 18.00 1.60 N 4 1 "C2'" B C 163 ? ? "C3'" B C 163 ? ? "O3'" B C 163 ? ? 128.31 113.70 14.61 1.60 N 5 1 "C2'" B G 164 ? ? "C3'" B G 164 ? ? "O3'" B G 164 ? ? 126.21 113.70 12.51 1.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 5 ? ? 174.95 179.71 2 1 PRO A 8 ? ? -49.87 154.70 3 1 ASN A 16 ? ? 71.30 32.70 4 1 MSE A 97 ? ? -103.90 -87.73 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 "C3'" ? B C 122 ? PLANAR . 2 1 "C3'" ? B C 163 ? PLANAR . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 2 ? B ALA 1 2 1 Y 1 A VAL 3 ? B VAL 2 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1DRZ 'double helix' 1DRZ 'a-form double helix' 1DRZ 'bulge loop' 1DRZ 'mismatched base pair' 1DRZ 'internal loop' 1DRZ 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 21 1_555 A G 39 1_555 0.379 -0.116 -0.268 12.465 -31.436 1.193 1 B_C121:G139_B B 121 ? B 139 ? 19 1 1 A C 22 1_555 A G 38 1_555 -0.474 0.349 -0.148 17.898 -8.848 3.650 2 B_C122:G138_B B 122 ? B 138 ? 19 1 1 A G 1 1_555 A U 37 1_555 -2.523 -0.016 -0.115 0.144 -1.530 7.197 3 B_G101:U137_B B 101 ? B 137 ? 28 ? 1 A G 2 1_555 A C 36 1_555 -0.212 -0.194 -0.676 -7.839 -5.063 4.092 4 B_G102:C136_B B 102 ? B 136 ? 19 1 1 A C 3 1_555 A G 35 1_555 0.564 -0.113 -0.412 -0.022 -3.465 2.652 5 B_C103:G135_B B 103 ? B 135 ? 19 1 1 A C 4 1_555 A G 34 1_555 0.546 0.046 -0.013 1.353 -5.088 8.460 6 B_C104:G134_B B 104 ? B 134 ? 19 1 1 A G 5 1_555 A C 33 1_555 -0.564 -0.082 0.408 4.914 -5.568 6.376 7 B_G105:C133_B B 105 ? B 133 ? 19 1 1 A G 6 1_555 A C 32 1_555 0.330 -0.226 0.123 4.976 -7.889 2.462 8 B_G106:C132_B B 106 ? B 132 ? 19 1 1 A C 7 1_555 A G 31 1_555 0.373 0.238 -0.458 14.832 -12.631 2.479 9 B_C107:G131_B B 107 ? B 131 ? 19 1 1 A G 11 1_555 A C 72 1_555 -0.485 0.069 0.786 1.146 -11.397 2.620 10 B_G111:C172_B B 111 ? B 172 ? 19 1 1 A U 12 1_555 A A 71 1_555 -0.089 0.122 0.317 0.490 -12.729 4.379 11 B_U112:A171_B B 112 ? B 171 ? 20 1 1 A C 13 1_555 A G 70 1_555 0.603 -0.105 0.299 -2.305 -9.873 5.339 12 B_C113:G170_B B 113 ? B 170 ? 19 1 1 A C 14 1_555 A G 69 1_555 0.553 -0.131 0.081 -3.209 -11.345 3.535 13 B_C114:G169_B B 114 ? B 169 ? 19 1 1 A C 15 1_555 A G 68 1_555 0.193 0.048 -0.294 4.288 -7.317 1.081 14 B_C115:G168_B B 115 ? B 168 ? 19 1 1 A A 16 1_555 A U 67 1_555 -0.420 0.380 0.146 11.346 8.445 16.511 15 B_A116:U167_B B 116 ? B 167 ? ? 1 1 A G 17 1_555 A C 30 1_555 -0.670 0.086 0.467 10.326 -20.432 1.338 16 B_G117:C130_B B 117 ? B 130 ? 19 1 1 A C 18 1_555 A G 29 1_555 0.113 -0.136 0.165 10.385 -31.449 5.386 17 B_C118:G129_B B 118 ? B 129 ? 19 1 1 A C 19 1_555 A G 28 1_555 0.376 -0.372 0.752 -7.132 -20.075 -5.690 18 B_C119:G128_B B 119 ? B 128 ? 19 1 1 A A 43 1_555 A G 62 1_555 -0.098 1.706 -0.290 -14.776 -18.431 -11.692 19 B_A143:G162_B B 143 ? B 162 ? 8 ? 1 A C 44 1_555 A G 61 1_555 0.282 0.107 0.188 2.561 -27.223 3.992 20 B_C144:G161_B B 144 ? B 161 ? 19 1 1 A A 45 1_555 A U 60 1_555 0.053 0.036 0.020 -2.882 -10.032 5.088 21 B_A145:U160_B B 145 ? B 160 ? 20 1 1 A C 46 1_555 A G 59 1_555 0.077 -0.261 -0.117 0.277 -9.425 1.171 22 B_C146:G159_B B 146 ? B 159 ? 19 1 1 A C 47 1_555 A G 58 1_555 0.202 -0.247 -0.019 -1.853 -5.059 -0.233 23 B_C147:G158_B B 147 ? B 158 ? 19 1 1 A U 55 1_555 A C 56 1_555 -6.986 1.227 0.399 -13.245 -1.884 -2.258 24 B_U155:C156_B B 155 ? B 156 ? ? 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 21 1_555 A G 39 1_555 A C 22 1_555 A G 38 1_555 -0.138 -1.226 3.288 3.133 14.638 31.818 -4.071 0.665 2.480 25.041 -5.360 35.081 1 BB_C121C122:G138G139_BB B 121 ? B 139 ? B 122 ? B 138 ? 1 A C 22 1_555 A G 38 1_555 A G 1 1_555 A U 37 1_555 2.671 -3.500 3.762 -1.607 4.650 7.220 -31.615 -20.524 0.760 32.421 11.208 8.735 2 BB_C122G101:U137G138_BB B 122 ? B 138 ? B 101 ? B 137 ? 1 A G 1 1_555 A U 37 1_555 A G 2 1_555 A C 36 1_555 -0.805 -1.782 3.600 2.800 5.906 38.973 -3.369 1.539 3.244 8.776 -4.161 39.497 3 BB_G101G102:C136U137_BB B 101 ? B 137 ? B 102 ? B 136 ? 1 A G 2 1_555 A C 36 1_555 A C 3 1_555 A G 35 1_555 -0.080 -1.610 3.214 -2.100 1.875 34.544 -2.983 -0.179 3.125 3.151 3.530 34.655 4 BB_G102C103:G135C136_BB B 102 ? B 136 ? B 103 ? B 135 ? 1 A C 3 1_555 A G 35 1_555 A C 4 1_555 A G 34 1_555 0.291 -1.769 3.291 -1.523 0.057 28.055 -3.657 -0.958 3.268 0.117 3.139 28.095 5 BB_C103C104:G134G135_BB B 103 ? B 135 ? B 104 ? B 134 ? 1 A C 4 1_555 A G 34 1_555 A G 5 1_555 A C 33 1_555 -0.395 -1.771 2.860 -2.784 12.478 25.034 -5.882 0.316 1.820 26.679 5.953 28.063 6 BB_C104G105:C133G134_BB B 104 ? B 134 ? B 105 ? B 133 ? 1 A G 5 1_555 A C 33 1_555 A G 6 1_555 A C 32 1_555 -0.666 -1.803 3.137 -1.138 6.430 33.945 -3.943 0.960 2.779 10.888 1.928 34.549 7 BB_G105G106:C132C133_BB B 105 ? B 133 ? B 106 ? B 132 ? 1 A G 6 1_555 A C 32 1_555 A C 7 1_555 A G 31 1_555 0.309 -1.522 2.998 4.411 2.676 34.490 -2.908 0.090 2.891 4.482 -7.389 34.862 8 BB_G106C107:G131C132_BB B 106 ? B 132 ? B 107 ? B 131 ? 1 A G 11 1_555 A C 72 1_555 A U 12 1_555 A A 71 1_555 -0.328 -1.350 3.263 2.699 4.984 33.428 -3.088 0.981 3.002 8.588 -4.651 33.892 9 BB_G111U112:A171C172_BB B 111 ? B 172 ? B 112 ? B 171 ? 1 A U 12 1_555 A A 71 1_555 A C 13 1_555 A G 70 1_555 0.380 -1.574 3.141 -0.145 9.236 34.308 -3.799 -0.643 2.641 15.316 0.241 35.494 10 BB_U112C113:G170A171_BB B 112 ? B 171 ? B 113 ? B 170 ? 1 A C 13 1_555 A G 70 1_555 A C 14 1_555 A G 69 1_555 -0.562 -1.887 3.238 -0.934 2.349 31.590 -3.876 0.863 3.108 4.306 1.713 31.688 11 BB_C113C114:G169G170_BB B 113 ? B 170 ? B 114 ? B 169 ? 1 A C 14 1_555 A G 69 1_555 A C 15 1_555 A G 68 1_555 -0.149 -1.561 3.153 0.436 1.990 27.640 -3.714 0.410 3.033 4.159 -0.912 27.713 12 BB_C114C115:G168G169_BB B 114 ? B 169 ? B 115 ? B 168 ? 1 A C 15 1_555 A G 68 1_555 A A 16 1_555 A U 67 1_555 1.514 -1.441 3.135 -3.371 -3.718 26.717 -2.169 -4.036 3.092 -7.958 7.215 27.176 13 BB_C115A116:U167G168_BB B 115 ? B 168 ? B 116 ? B 167 ? 1 A A 16 1_555 A U 67 1_555 A G 17 1_555 A C 30 1_555 0.798 -2.020 3.003 1.196 4.631 40.926 -3.316 -1.019 2.789 6.596 -1.704 41.193 14 BB_A116G117:C130U167_BB B 116 ? B 167 ? B 117 ? B 130 ? 1 A G 17 1_555 A C 30 1_555 A C 18 1_555 A G 29 1_555 0.607 -1.239 3.222 4.450 2.232 38.367 -2.140 -0.378 3.196 3.378 -6.736 38.677 15 BB_G117C118:G129C130_BB B 117 ? B 130 ? B 118 ? B 129 ? 1 A C 18 1_555 A G 29 1_555 A C 19 1_555 A G 28 1_555 -0.495 -1.348 3.762 -1.972 7.971 38.691 -3.038 0.474 3.448 11.868 2.936 39.520 16 BB_C118C119:G128G129_BB B 118 ? B 129 ? B 119 ? B 128 ? 1 A A 43 1_555 A G 62 1_555 A C 44 1_555 A G 61 1_555 0.603 -0.577 2.829 -5.877 7.032 33.007 -1.903 -1.796 2.515 12.090 10.103 34.222 17 BB_A143C144:G161G162_BB B 143 ? B 162 ? B 144 ? B 161 ? 1 A C 44 1_555 A G 61 1_555 A A 45 1_555 A U 60 1_555 -0.334 -1.457 3.248 -4.159 12.370 32.350 -4.172 -0.027 2.559 21.159 7.115 34.818 18 BB_C144A145:U160G161_BB B 144 ? B 161 ? B 145 ? B 160 ? 1 A A 45 1_555 A U 60 1_555 A C 46 1_555 A G 59 1_555 -0.169 -1.211 3.184 -1.420 2.725 32.377 -2.620 0.063 3.079 4.874 2.539 32.518 19 BB_A145C146:G159U160_BB B 145 ? B 160 ? B 146 ? B 159 ? 1 A C 46 1_555 A G 59 1_555 A C 47 1_555 A G 58 1_555 -0.042 -1.667 3.397 -2.360 2.110 31.932 -3.404 -0.358 3.277 3.824 4.277 32.085 20 BB_C146C147:G158G159_BB B 146 ? B 159 ? B 147 ? B 158 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 'SULFATE ION' SO4 5 water HOH #