data_1DUS # _entry.id 1DUS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1DUS RCSB RCSB010388 WWPDB D_1000010388 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id BSGCAIR30382 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DUS _pdbx_database_status.recvd_initial_deposition_date 2000-01-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hung, L.' 1 'Huang, L.' 2 'Kim, R.' 3 'Kim, S.H.' 4 'Berkeley Structural Genomics Center (BSGC)' 5 # _citation.id primary _citation.title ;Structure-based experimental confirmation of biochemical function to a methyltransferase, MJ0882, from hyperthermophile Methanococcus jannaschii ; _citation.journal_abbrev J.STRUCT.FUNCT.GENOM. _citation.journal_volume 2 _citation.page_first 121 _citation.page_last 127 _citation.year 2002 _citation.journal_id_ASTM ? _citation.country NE _citation.journal_id_ISSN 1345-711X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12836702 _citation.pdbx_database_id_DOI 10.1023/A:1021279113558 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Huang, L.' 1 primary 'Hung, L.' 2 primary 'Odell, M.' 3 primary 'Yokota, H.' 4 primary 'Kim, R.' 5 primary 'Kim, S.H.' 6 # _cell.entry_id 1DUS _cell.length_a 69.340 _cell.length_b 36.780 _cell.length_c 68.340 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DUS _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man MJ0882 21945.170 1 ? ? ? ? 2 water nat water 18.015 163 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;FSEKPTTKSDVKIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTT (MSE)ADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIW VVIQTKQGAKSLAKY(MSE)KDVFGNVETVTIKGGYRVLKSKKL ; _entity_poly.pdbx_seq_one_letter_code_can ;FSEKPTTKSDVKIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMA DINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK QGAKSLAKYMKDVFGNVETVTIKGGYRVLKSKKL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier BSGCAIR30382 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 SER n 1 3 GLU n 1 4 LYS n 1 5 PRO n 1 6 THR n 1 7 THR n 1 8 LYS n 1 9 SER n 1 10 ASP n 1 11 VAL n 1 12 LYS n 1 13 ILE n 1 14 VAL n 1 15 GLU n 1 16 ASP n 1 17 ILE n 1 18 LEU n 1 19 ARG n 1 20 GLY n 1 21 LYS n 1 22 LYS n 1 23 LEU n 1 24 LYS n 1 25 PHE n 1 26 LYS n 1 27 THR n 1 28 ASP n 1 29 SER n 1 30 GLY n 1 31 VAL n 1 32 PHE n 1 33 SER n 1 34 TYR n 1 35 GLY n 1 36 LYS n 1 37 VAL n 1 38 ASP n 1 39 LYS n 1 40 GLY n 1 41 THR n 1 42 LYS n 1 43 ILE n 1 44 LEU n 1 45 VAL n 1 46 GLU n 1 47 ASN n 1 48 VAL n 1 49 VAL n 1 50 VAL n 1 51 ASP n 1 52 LYS n 1 53 ASP n 1 54 ASP n 1 55 ASP n 1 56 ILE n 1 57 LEU n 1 58 ASP n 1 59 LEU n 1 60 GLY n 1 61 CYS n 1 62 GLY n 1 63 TYR n 1 64 GLY n 1 65 VAL n 1 66 ILE n 1 67 GLY n 1 68 ILE n 1 69 ALA n 1 70 LEU n 1 71 ALA n 1 72 ASP n 1 73 GLU n 1 74 VAL n 1 75 LYS n 1 76 SER n 1 77 THR n 1 78 THR n 1 79 MSE n 1 80 ALA n 1 81 ASP n 1 82 ILE n 1 83 ASN n 1 84 ARG n 1 85 ARG n 1 86 ALA n 1 87 ILE n 1 88 LYS n 1 89 LEU n 1 90 ALA n 1 91 LYS n 1 92 GLU n 1 93 ASN n 1 94 ILE n 1 95 LYS n 1 96 LEU n 1 97 ASN n 1 98 ASN n 1 99 LEU n 1 100 ASP n 1 101 ASN n 1 102 TYR n 1 103 ASP n 1 104 ILE n 1 105 ARG n 1 106 VAL n 1 107 VAL n 1 108 HIS n 1 109 SER n 1 110 ASP n 1 111 LEU n 1 112 TYR n 1 113 GLU n 1 114 ASN n 1 115 VAL n 1 116 LYS n 1 117 ASP n 1 118 ARG n 1 119 LYS n 1 120 TYR n 1 121 ASN n 1 122 LYS n 1 123 ILE n 1 124 ILE n 1 125 THR n 1 126 ASN n 1 127 PRO n 1 128 PRO n 1 129 ILE n 1 130 ARG n 1 131 ALA n 1 132 GLY n 1 133 LYS n 1 134 GLU n 1 135 VAL n 1 136 LEU n 1 137 HIS n 1 138 ARG n 1 139 ILE n 1 140 ILE n 1 141 GLU n 1 142 GLU n 1 143 GLY n 1 144 LYS n 1 145 GLU n 1 146 LEU n 1 147 LEU n 1 148 LYS n 1 149 ASP n 1 150 ASN n 1 151 GLY n 1 152 GLU n 1 153 ILE n 1 154 TRP n 1 155 VAL n 1 156 VAL n 1 157 ILE n 1 158 GLN n 1 159 THR n 1 160 LYS n 1 161 GLN n 1 162 GLY n 1 163 ALA n 1 164 LYS n 1 165 SER n 1 166 LEU n 1 167 ALA n 1 168 LYS n 1 169 TYR n 1 170 MSE n 1 171 LYS n 1 172 ASP n 1 173 VAL n 1 174 PHE n 1 175 GLY n 1 176 ASN n 1 177 VAL n 1 178 GLU n 1 179 THR n 1 180 VAL n 1 181 THR n 1 182 ILE n 1 183 LYS n 1 184 GLY n 1 185 GLY n 1 186 TYR n 1 187 ARG n 1 188 VAL n 1 189 LEU n 1 190 LYS n 1 191 SER n 1 192 LYS n 1 193 LYS n 1 194 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Methanocaldococcus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanocaldococcus jannaschii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2190 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Y882_METJA _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession Q58292 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1DUS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 194 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q58292 _struct_ref_seq.db_align_beg 4 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 197 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 197 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1DUS MSE A 79 ? UNP Q58292 MET 82 'MODIFIED RESIDUE' 82 1 1 1DUS MSE A 170 ? UNP Q58292 MET 173 'MODIFIED RESIDUE' 173 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1DUS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.99 _exptl_crystal.density_percent_sol 38.05 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.13 _exptl_crystal_grow.pdbx_details '2.75 M ammonium sulfate, 0.1 M MES, pH 5.13, VAPOR DIFFUSION, HANGING DROP, temperature 294K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 1998-07-31 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9797 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength 0.9797 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DUS _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 1.6 _reflns.number_obs 23819 _reflns.number_all 23830 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.077 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.4 _reflns.B_iso_Wilson_estimate 14.8 _reflns.pdbx_redundancy 8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.63 _reflns_shell.percent_possible_all 99.2 _reflns_shell.Rmerge_I_obs 0.32 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1153 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1DUS _refine.ls_number_reflns_obs 16370 _refine.ls_number_reflns_all 16808 _refine.pdbx_ls_sigma_I 2.0 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 543599.17 _refine.pdbx_data_cutoff_low_absF 0.00 _refine.ls_d_res_low 19.57 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 97.4 _refine.ls_R_factor_obs 0.188 _refine.ls_R_factor_all 0.192 _refine.ls_R_factor_R_work 0.188 _refine.ls_R_factor_R_free 0.235 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 1609 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 23.2 _refine.aniso_B[1][1] 1.90 _refine.aniso_B[2][2] -0.15 _refine.aniso_B[3][3] -1.76 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.385 _refine.solvent_model_param_bsol 50.36 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1DUS _refine_analyze.Luzzati_coordinate_error_obs 0.18 _refine_analyze.Luzzati_sigma_a_obs 0.03 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.23 _refine_analyze.Luzzati_sigma_a_free 0.06 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1534 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 163 _refine_hist.number_atoms_total 1697 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 19.57 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.7 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.9 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.92 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 2.43 2.00 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 3.20 2.50 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 3.35 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 5.01 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.91 _refine_ls_shell.number_reflns_R_work 2270 _refine_ls_shell.R_factor_R_work 0.173 _refine_ls_shell.percent_reflns_obs 92.0 _refine_ls_shell.R_factor_R_free 0.231 _refine_ls_shell.R_factor_R_free_error 0.015 _refine_ls_shell.percent_reflns_R_free 10.0 _refine_ls_shell.number_reflns_R_free 253 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER_REP.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1DUS _struct.title 'MJ0882-A hypothetical protein from M. jannaschii' _struct.pdbx_descriptor MJ0882 _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DUS _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS' _struct_keywords.text ;Hypothetical protein, Methanococcus jannaschii, Structural Genomics, BSGC structure funded by NIH, Protein Structure Initiative, PSI, Berkeley Structural Genomics Center ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 38 ? VAL A 48 ? ASP A 41 VAL A 51 1 ? 11 HELX_P HELX_P2 2 GLY A 64 ? ALA A 71 ? GLY A 67 ALA A 74 1 ? 8 HELX_P HELX_P3 3 ASP A 72 ? VAL A 74 ? ASP A 75 VAL A 77 5 ? 3 HELX_P HELX_P4 4 ASN A 83 ? ASN A 97 ? ASN A 86 ASN A 100 1 ? 15 HELX_P HELX_P5 5 GLY A 132 ? LEU A 146 ? GLY A 135 LEU A 149 1 ? 15 HELX_P HELX_P6 6 LYS A 160 ? GLY A 175 ? LYS A 163 GLY A 178 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A THR 78 C ? ? ? 1_555 A MSE 79 N ? ? A THR 81 A MSE 82 1_555 ? ? ? ? ? ? ? 1.335 ? covale2 covale ? ? A MSE 79 C ? ? ? 1_555 A ALA 80 N ? ? A MSE 82 A ALA 83 1_555 ? ? ? ? ? ? ? 1.323 ? covale3 covale ? ? A TYR 169 C ? ? ? 1_555 A MSE 170 N ? ? A TYR 172 A MSE 173 1_555 ? ? ? ? ? ? ? 1.331 ? covale4 covale ? ? A MSE 170 C ? ? ? 1_555 A LYS 171 N ? ? A MSE 173 A LYS 174 1_555 ? ? ? ? ? ? ? 1.327 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 11 ? LEU A 18 ? VAL A 14 LEU A 21 A 2 LYS A 21 ? ASP A 28 ? LYS A 24 ASP A 31 B 1 ILE A 104 ? HIS A 108 ? ILE A 107 HIS A 111 B 2 SER A 76 ? ASP A 81 ? SER A 79 ASP A 84 B 3 ASP A 55 ? LEU A 59 ? ASP A 58 LEU A 62 B 4 TYR A 120 ? THR A 125 ? TYR A 123 THR A 128 B 5 LEU A 147 ? GLN A 158 ? LEU A 150 GLN A 161 B 6 TYR A 186 ? LYS A 192 ? TYR A 189 LYS A 195 B 7 GLU A 178 ? LYS A 183 ? GLU A 181 LYS A 186 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 18 ? O LEU A 21 N LYS A 21 ? N LYS A 24 B 1 2 N ARG A 105 ? N ARG A 108 O THR A 77 ? O THR A 80 B 2 3 O SER A 76 ? O SER A 79 N ILE A 56 ? N ILE A 59 B 3 4 O ASP A 55 ? O ASP A 58 N ASN A 121 ? N ASN A 124 B 4 5 O TYR A 120 ? O TYR A 123 N LYS A 148 ? N LYS A 151 B 5 6 O ILE A 157 ? O ILE A 160 N ARG A 187 ? N ARG A 190 B 6 7 N LYS A 190 ? N LYS A 193 O GLU A 178 ? O GLU A 181 # _database_PDB_matrix.entry_id 1DUS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1DUS _atom_sites.fract_transf_matrix[1][1] 0.014422 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027189 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014633 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 4 4 PHE PHE A . n A 1 2 SER 2 5 5 SER SER A . n A 1 3 GLU 3 6 6 GLU GLU A . n A 1 4 LYS 4 7 7 LYS LYS A . n A 1 5 PRO 5 8 8 PRO PRO A . n A 1 6 THR 6 9 9 THR THR A . n A 1 7 THR 7 10 10 THR THR A . n A 1 8 LYS 8 11 11 LYS LYS A . n A 1 9 SER 9 12 12 SER SER A . n A 1 10 ASP 10 13 13 ASP ASP A . n A 1 11 VAL 11 14 14 VAL VAL A . n A 1 12 LYS 12 15 15 LYS LYS A . n A 1 13 ILE 13 16 16 ILE ILE A . n A 1 14 VAL 14 17 17 VAL VAL A . n A 1 15 GLU 15 18 18 GLU GLU A . n A 1 16 ASP 16 19 19 ASP ASP A . n A 1 17 ILE 17 20 20 ILE ILE A . n A 1 18 LEU 18 21 21 LEU LEU A . n A 1 19 ARG 19 22 22 ARG ARG A . n A 1 20 GLY 20 23 23 GLY GLY A . n A 1 21 LYS 21 24 24 LYS LYS A . n A 1 22 LYS 22 25 25 LYS LYS A . n A 1 23 LEU 23 26 26 LEU LEU A . n A 1 24 LYS 24 27 27 LYS LYS A . n A 1 25 PHE 25 28 28 PHE PHE A . n A 1 26 LYS 26 29 29 LYS LYS A . n A 1 27 THR 27 30 30 THR THR A . n A 1 28 ASP 28 31 31 ASP ASP A . n A 1 29 SER 29 32 32 SER SER A . n A 1 30 GLY 30 33 33 GLY GLY A . n A 1 31 VAL 31 34 34 VAL VAL A . n A 1 32 PHE 32 35 35 PHE PHE A . n A 1 33 SER 33 36 36 SER SER A . n A 1 34 TYR 34 37 37 TYR TYR A . n A 1 35 GLY 35 38 38 GLY GLY A . n A 1 36 LYS 36 39 39 LYS LYS A . n A 1 37 VAL 37 40 40 VAL VAL A . n A 1 38 ASP 38 41 41 ASP ASP A . n A 1 39 LYS 39 42 42 LYS LYS A . n A 1 40 GLY 40 43 43 GLY GLY A . n A 1 41 THR 41 44 44 THR THR A . n A 1 42 LYS 42 45 45 LYS LYS A . n A 1 43 ILE 43 46 46 ILE ILE A . n A 1 44 LEU 44 47 47 LEU LEU A . n A 1 45 VAL 45 48 48 VAL VAL A . n A 1 46 GLU 46 49 49 GLU GLU A . n A 1 47 ASN 47 50 50 ASN ASN A . n A 1 48 VAL 48 51 51 VAL VAL A . n A 1 49 VAL 49 52 52 VAL VAL A . n A 1 50 VAL 50 53 53 VAL VAL A . n A 1 51 ASP 51 54 54 ASP ASP A . n A 1 52 LYS 52 55 55 LYS LYS A . n A 1 53 ASP 53 56 56 ASP ASP A . n A 1 54 ASP 54 57 57 ASP ASP A . n A 1 55 ASP 55 58 58 ASP ASP A . n A 1 56 ILE 56 59 59 ILE ILE A . n A 1 57 LEU 57 60 60 LEU LEU A . n A 1 58 ASP 58 61 61 ASP ASP A . n A 1 59 LEU 59 62 62 LEU LEU A . n A 1 60 GLY 60 63 63 GLY GLY A . n A 1 61 CYS 61 64 64 CYS CYS A . n A 1 62 GLY 62 65 65 GLY GLY A . n A 1 63 TYR 63 66 66 TYR TYR A . n A 1 64 GLY 64 67 67 GLY GLY A . n A 1 65 VAL 65 68 68 VAL VAL A . n A 1 66 ILE 66 69 69 ILE ILE A . n A 1 67 GLY 67 70 70 GLY GLY A . n A 1 68 ILE 68 71 71 ILE ILE A . n A 1 69 ALA 69 72 72 ALA ALA A . n A 1 70 LEU 70 73 73 LEU LEU A . n A 1 71 ALA 71 74 74 ALA ALA A . n A 1 72 ASP 72 75 75 ASP ASP A . n A 1 73 GLU 73 76 76 GLU GLU A . n A 1 74 VAL 74 77 77 VAL VAL A . n A 1 75 LYS 75 78 78 LYS LYS A . n A 1 76 SER 76 79 79 SER SER A . n A 1 77 THR 77 80 80 THR THR A . n A 1 78 THR 78 81 81 THR THR A . n A 1 79 MSE 79 82 82 MSE MSE A . n A 1 80 ALA 80 83 83 ALA ALA A . n A 1 81 ASP 81 84 84 ASP ASP A . n A 1 82 ILE 82 85 85 ILE ILE A . n A 1 83 ASN 83 86 86 ASN ASN A . n A 1 84 ARG 84 87 87 ARG ARG A . n A 1 85 ARG 85 88 88 ARG ARG A . n A 1 86 ALA 86 89 89 ALA ALA A . n A 1 87 ILE 87 90 90 ILE ILE A . n A 1 88 LYS 88 91 91 LYS LYS A . n A 1 89 LEU 89 92 92 LEU LEU A . n A 1 90 ALA 90 93 93 ALA ALA A . n A 1 91 LYS 91 94 94 LYS LYS A . n A 1 92 GLU 92 95 95 GLU GLU A . n A 1 93 ASN 93 96 96 ASN ASN A . n A 1 94 ILE 94 97 97 ILE ILE A . n A 1 95 LYS 95 98 98 LYS LYS A . n A 1 96 LEU 96 99 99 LEU LEU A . n A 1 97 ASN 97 100 100 ASN ASN A . n A 1 98 ASN 98 101 101 ASN ASN A . n A 1 99 LEU 99 102 102 LEU LEU A . n A 1 100 ASP 100 103 103 ASP ASP A . n A 1 101 ASN 101 104 104 ASN ASN A . n A 1 102 TYR 102 105 105 TYR TYR A . n A 1 103 ASP 103 106 106 ASP ASP A . n A 1 104 ILE 104 107 107 ILE ILE A . n A 1 105 ARG 105 108 108 ARG ARG A . n A 1 106 VAL 106 109 109 VAL VAL A . n A 1 107 VAL 107 110 110 VAL VAL A . n A 1 108 HIS 108 111 111 HIS HIS A . n A 1 109 SER 109 112 112 SER SER A . n A 1 110 ASP 110 113 113 ASP ASP A . n A 1 111 LEU 111 114 114 LEU LEU A . n A 1 112 TYR 112 115 115 TYR TYR A . n A 1 113 GLU 113 116 116 GLU GLU A . n A 1 114 ASN 114 117 117 ASN ASN A . n A 1 115 VAL 115 118 118 VAL VAL A . n A 1 116 LYS 116 119 119 LYS LYS A . n A 1 117 ASP 117 120 120 ASP ASP A . n A 1 118 ARG 118 121 121 ARG ARG A . n A 1 119 LYS 119 122 122 LYS LYS A . n A 1 120 TYR 120 123 123 TYR TYR A . n A 1 121 ASN 121 124 124 ASN ASN A . n A 1 122 LYS 122 125 125 LYS LYS A . n A 1 123 ILE 123 126 126 ILE ILE A . n A 1 124 ILE 124 127 127 ILE ILE A . n A 1 125 THR 125 128 128 THR THR A . n A 1 126 ASN 126 129 129 ASN ASN A . n A 1 127 PRO 127 130 130 PRO PRO A . n A 1 128 PRO 128 131 131 PRO PRO A . n A 1 129 ILE 129 132 132 ILE ILE A . n A 1 130 ARG 130 133 133 ARG ARG A . n A 1 131 ALA 131 134 134 ALA ALA A . n A 1 132 GLY 132 135 135 GLY GLY A . n A 1 133 LYS 133 136 136 LYS LYS A . n A 1 134 GLU 134 137 137 GLU GLU A . n A 1 135 VAL 135 138 138 VAL VAL A . n A 1 136 LEU 136 139 139 LEU LEU A . n A 1 137 HIS 137 140 140 HIS HIS A . n A 1 138 ARG 138 141 141 ARG ARG A . n A 1 139 ILE 139 142 142 ILE ILE A . n A 1 140 ILE 140 143 143 ILE ILE A . n A 1 141 GLU 141 144 144 GLU GLU A . n A 1 142 GLU 142 145 145 GLU GLU A . n A 1 143 GLY 143 146 146 GLY GLY A . n A 1 144 LYS 144 147 147 LYS LYS A . n A 1 145 GLU 145 148 148 GLU GLU A . n A 1 146 LEU 146 149 149 LEU LEU A . n A 1 147 LEU 147 150 150 LEU LEU A . n A 1 148 LYS 148 151 151 LYS LYS A . n A 1 149 ASP 149 152 152 ASP ASP A . n A 1 150 ASN 150 153 153 ASN ASN A . n A 1 151 GLY 151 154 154 GLY GLY A . n A 1 152 GLU 152 155 155 GLU GLU A . n A 1 153 ILE 153 156 156 ILE ILE A . n A 1 154 TRP 154 157 157 TRP TRP A . n A 1 155 VAL 155 158 158 VAL VAL A . n A 1 156 VAL 156 159 159 VAL VAL A . n A 1 157 ILE 157 160 160 ILE ILE A . n A 1 158 GLN 158 161 161 GLN GLN A . n A 1 159 THR 159 162 162 THR THR A . n A 1 160 LYS 160 163 163 LYS LYS A . n A 1 161 GLN 161 164 164 GLN GLN A . n A 1 162 GLY 162 165 165 GLY GLY A . n A 1 163 ALA 163 166 166 ALA ALA A . n A 1 164 LYS 164 167 167 LYS LYS A . n A 1 165 SER 165 168 168 SER SER A . n A 1 166 LEU 166 169 169 LEU LEU A . n A 1 167 ALA 167 170 170 ALA ALA A . n A 1 168 LYS 168 171 171 LYS LYS A . n A 1 169 TYR 169 172 172 TYR TYR A . n A 1 170 MSE 170 173 173 MSE MSE A . n A 1 171 LYS 171 174 174 LYS LYS A . n A 1 172 ASP 172 175 175 ASP ASP A . n A 1 173 VAL 173 176 176 VAL VAL A . n A 1 174 PHE 174 177 177 PHE PHE A . n A 1 175 GLY 175 178 178 GLY GLY A . n A 1 176 ASN 176 179 179 ASN ASN A . n A 1 177 VAL 177 180 180 VAL VAL A . n A 1 178 GLU 178 181 181 GLU GLU A . n A 1 179 THR 179 182 182 THR THR A . n A 1 180 VAL 180 183 183 VAL VAL A . n A 1 181 THR 181 184 184 THR THR A . n A 1 182 ILE 182 185 185 ILE ILE A . n A 1 183 LYS 183 186 186 LYS LYS A . n A 1 184 GLY 184 187 187 GLY GLY A . n A 1 185 GLY 185 188 188 GLY GLY A . n A 1 186 TYR 186 189 189 TYR TYR A . n A 1 187 ARG 187 190 190 ARG ARG A . n A 1 188 VAL 188 191 191 VAL VAL A . n A 1 189 LEU 189 192 192 LEU LEU A . n A 1 190 LYS 190 193 193 LYS LYS A . n A 1 191 SER 191 194 194 SER SER A . n A 1 192 LYS 192 195 195 LYS LYS A . n A 1 193 LYS 193 196 196 LYS LYS A . n A 1 194 LEU 194 197 197 LEU LEU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Berkeley Structural Genomics Center' _pdbx_SG_project.initial_of_center BSGC # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 79 A MSE 82 ? MET SELENOMETHIONINE 2 A MSE 170 A MSE 173 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 462 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-07-19 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 SOLVE phasing . ? 3 CNS refinement 0.9 ? 4 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 401 ? ? 1_555 O A HOH 507 ? ? 3_545 2.07 2 1 OE1 A GLU 137 ? ? 1_555 O A HOH 405 ? ? 2_665 2.13 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 114 ? ? 54.27 -122.95 2 1 THR A 162 ? ? -33.04 -174.09 3 1 LYS A 163 ? ? 72.64 -136.17 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 401 401 HOH HOH A . B 2 HOH 2 402 402 HOH HOH A . B 2 HOH 3 403 403 HOH HOH A . B 2 HOH 4 404 404 HOH HOH A . B 2 HOH 5 405 405 HOH HOH A . B 2 HOH 6 406 406 HOH HOH A . B 2 HOH 7 407 407 HOH HOH A . B 2 HOH 8 408 408 HOH HOH A . B 2 HOH 9 409 409 HOH HOH A . B 2 HOH 10 410 410 HOH HOH A . B 2 HOH 11 411 411 HOH HOH A . B 2 HOH 12 412 412 HOH HOH A . B 2 HOH 13 413 413 HOH HOH A . B 2 HOH 14 414 414 HOH HOH A . B 2 HOH 15 415 415 HOH HOH A . B 2 HOH 16 416 416 HOH HOH A . B 2 HOH 17 417 417 HOH HOH A . B 2 HOH 18 418 418 HOH HOH A . B 2 HOH 19 419 419 HOH HOH A . B 2 HOH 20 420 420 HOH HOH A . B 2 HOH 21 421 421 HOH HOH A . B 2 HOH 22 422 422 HOH HOH A . B 2 HOH 23 423 423 HOH HOH A . B 2 HOH 24 424 424 HOH HOH A . B 2 HOH 25 425 425 HOH HOH A . B 2 HOH 26 426 426 HOH HOH A . B 2 HOH 27 427 427 HOH HOH A . B 2 HOH 28 428 428 HOH HOH A . B 2 HOH 29 429 429 HOH HOH A . B 2 HOH 30 430 430 HOH HOH A . B 2 HOH 31 431 431 HOH HOH A . B 2 HOH 32 432 432 HOH HOH A . B 2 HOH 33 433 433 HOH HOH A . B 2 HOH 34 434 434 HOH HOH A . B 2 HOH 35 435 435 HOH HOH A . B 2 HOH 36 436 436 HOH HOH A . B 2 HOH 37 437 437 HOH HOH A . B 2 HOH 38 438 438 HOH HOH A . B 2 HOH 39 439 439 HOH HOH A . B 2 HOH 40 440 440 HOH HOH A . B 2 HOH 41 441 441 HOH HOH A . B 2 HOH 42 442 442 HOH HOH A . B 2 HOH 43 443 443 HOH HOH A . B 2 HOH 44 444 444 HOH HOH A . B 2 HOH 45 445 445 HOH HOH A . B 2 HOH 46 446 446 HOH HOH A . B 2 HOH 47 447 447 HOH HOH A . B 2 HOH 48 448 448 HOH HOH A . B 2 HOH 49 449 449 HOH HOH A . B 2 HOH 50 450 450 HOH HOH A . B 2 HOH 51 451 451 HOH HOH A . B 2 HOH 52 452 452 HOH HOH A . B 2 HOH 53 453 453 HOH HOH A . B 2 HOH 54 454 454 HOH HOH A . B 2 HOH 55 455 455 HOH HOH A . B 2 HOH 56 456 456 HOH HOH A . B 2 HOH 57 457 457 HOH HOH A . B 2 HOH 58 458 458 HOH HOH A . B 2 HOH 59 459 459 HOH HOH A . B 2 HOH 60 460 460 HOH HOH A . B 2 HOH 61 461 461 HOH HOH A . B 2 HOH 62 462 462 HOH HOH A . B 2 HOH 63 463 463 HOH HOH A . B 2 HOH 64 464 464 HOH HOH A . B 2 HOH 65 465 465 HOH HOH A . B 2 HOH 66 466 466 HOH HOH A . B 2 HOH 67 467 467 HOH HOH A . B 2 HOH 68 468 468 HOH HOH A . B 2 HOH 69 469 469 HOH HOH A . B 2 HOH 70 470 470 HOH HOH A . B 2 HOH 71 471 471 HOH HOH A . B 2 HOH 72 472 472 HOH HOH A . B 2 HOH 73 473 473 HOH HOH A . B 2 HOH 74 474 474 HOH HOH A . B 2 HOH 75 475 475 HOH HOH A . B 2 HOH 76 476 476 HOH HOH A . B 2 HOH 77 477 477 HOH HOH A . B 2 HOH 78 478 478 HOH HOH A . B 2 HOH 79 479 479 HOH HOH A . B 2 HOH 80 480 480 HOH HOH A . B 2 HOH 81 481 481 HOH HOH A . B 2 HOH 82 482 482 HOH HOH A . B 2 HOH 83 483 483 HOH HOH A . B 2 HOH 84 484 484 HOH HOH A . B 2 HOH 85 485 485 HOH HOH A . B 2 HOH 86 486 486 HOH HOH A . B 2 HOH 87 487 487 HOH HOH A . B 2 HOH 88 488 488 HOH HOH A . B 2 HOH 89 489 489 HOH HOH A . B 2 HOH 90 490 490 HOH HOH A . B 2 HOH 91 491 491 HOH HOH A . B 2 HOH 92 492 492 HOH HOH A . B 2 HOH 93 493 493 HOH HOH A . B 2 HOH 94 494 494 HOH HOH A . B 2 HOH 95 495 495 HOH HOH A . B 2 HOH 96 496 496 HOH HOH A . B 2 HOH 97 497 497 HOH HOH A . B 2 HOH 98 498 498 HOH HOH A . B 2 HOH 99 499 499 HOH HOH A . B 2 HOH 100 500 500 HOH HOH A . B 2 HOH 101 501 501 HOH HOH A . B 2 HOH 102 502 502 HOH HOH A . B 2 HOH 103 503 503 HOH HOH A . B 2 HOH 104 504 504 HOH HOH A . B 2 HOH 105 505 505 HOH HOH A . B 2 HOH 106 506 506 HOH HOH A . B 2 HOH 107 507 507 HOH HOH A . B 2 HOH 108 508 508 HOH HOH A . B 2 HOH 109 509 509 HOH HOH A . B 2 HOH 110 510 510 HOH HOH A . B 2 HOH 111 511 511 HOH HOH A . B 2 HOH 112 512 512 HOH HOH A . B 2 HOH 113 513 513 HOH HOH A . B 2 HOH 114 514 514 HOH HOH A . B 2 HOH 115 515 515 HOH HOH A . B 2 HOH 116 516 516 HOH HOH A . B 2 HOH 117 517 517 HOH HOH A . B 2 HOH 118 518 518 HOH HOH A . B 2 HOH 119 519 519 HOH HOH A . B 2 HOH 120 520 520 HOH HOH A . B 2 HOH 121 521 521 HOH HOH A . B 2 HOH 122 522 522 HOH HOH A . B 2 HOH 123 523 523 HOH HOH A . B 2 HOH 124 524 524 HOH HOH A . B 2 HOH 125 525 525 HOH HOH A . B 2 HOH 126 526 526 HOH HOH A . B 2 HOH 127 527 527 HOH HOH A . B 2 HOH 128 528 528 HOH HOH A . B 2 HOH 129 529 529 HOH HOH A . B 2 HOH 130 530 530 HOH HOH A . B 2 HOH 131 531 531 HOH HOH A . B 2 HOH 132 532 532 HOH HOH A . B 2 HOH 133 533 533 HOH HOH A . B 2 HOH 134 534 534 HOH HOH A . B 2 HOH 135 535 535 HOH HOH A . B 2 HOH 136 536 536 HOH HOH A . B 2 HOH 137 537 537 HOH HOH A . B 2 HOH 138 538 538 HOH HOH A . B 2 HOH 139 539 539 HOH HOH A . B 2 HOH 140 540 540 HOH HOH A . B 2 HOH 141 541 541 HOH HOH A . B 2 HOH 142 542 542 HOH HOH A . B 2 HOH 143 543 543 HOH HOH A . B 2 HOH 144 544 544 HOH HOH A . B 2 HOH 145 545 545 HOH HOH A . B 2 HOH 146 546 546 HOH HOH A . B 2 HOH 147 547 547 HOH HOH A . B 2 HOH 148 548 548 HOH HOH A . B 2 HOH 149 549 549 HOH HOH A . B 2 HOH 150 550 550 HOH HOH A . B 2 HOH 151 551 551 HOH HOH A . B 2 HOH 152 552 552 HOH HOH A . B 2 HOH 153 553 553 HOH HOH A . B 2 HOH 154 554 554 HOH HOH A . B 2 HOH 155 555 555 HOH HOH A . B 2 HOH 156 556 556 HOH HOH A . B 2 HOH 157 557 557 HOH HOH A . B 2 HOH 158 558 558 HOH HOH A . B 2 HOH 159 559 559 HOH HOH A . B 2 HOH 160 560 560 HOH HOH A . B 2 HOH 161 561 561 HOH HOH A . B 2 HOH 162 562 562 HOH HOH A . B 2 HOH 163 563 563 HOH HOH A . #