data_1DYL # _entry.id 1DYL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.318 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1DYL PDBE EBI-4222 WWPDB D_1290004222 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1VCQ unspecified 'SEMLIKI FOREST VIRUS CAPSID PROTEIN (CRYSTAL FORM II)' PDB 1VCP unspecified 'SEMLIKI FOREST VIRUS CAPSID PROTEIN (CRYSTAL FORM I)' EMDB EMD-1015 'associated EM volume' 'SEMLIKI FOREST VIRUS VOLUME DATA' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DYL _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2000-02-02 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mancini, E.J.' 1 'Clarke, M.' 2 'Gowen, B.E.' 3 'Rutten, T.' 4 'Fuller, S.D.' 5 # _citation.id primary _citation.title 'Cryo-Electron Microscopy Reveals the Functional Organization of an Enveloped Virus, Semliki Forest Virus.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 5 _citation.page_first 255 _citation.page_last 266 _citation.year 2000 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10882067 _citation.pdbx_database_id_DOI '10.1016/S1097-2765(00)80421-9' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mancini, E.J.' 1 ? primary 'Clarke, M.' 2 ? primary 'Gowen, B.E.' 3 ? primary 'Rutten, T.' 4 ? primary 'Fuller, S.D.' 5 ? # _cell.entry_id 1DYL _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DYL _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'NUCLEOCAPSID PROTEIN' _entity.formula_weight 16252.439 _entity.pdbx_number_of_molecules 4 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;CIFEVKHEGKVTGYACLVGDKVMKPAHVKGVIDNADLAKLAFKKSSKYDLECAQIPVHMRSDASKYTHEKPEGHYNWHHG AVQYSGGRFTIPTGAGKPGDSGRPIFDNKGRVVAIVLGGANEGSRTALSVVTWNKDMVTRVTPEGSEEW ; _entity_poly.pdbx_seq_one_letter_code_can ;CIFEVKHEGKVTGYACLVGDKVMKPAHVKGVIDNADLAKLAFKKSSKYDLECAQIPVHMRSDASKYTHEKPEGHYNWHHG AVQYSGGRFTIPTGAGKPGDSGRPIFDNKGRVVAIVLGGANEGSRTALSVVTWNKDMVTRVTPEGSEEW ; _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CYS n 1 2 ILE n 1 3 PHE n 1 4 GLU n 1 5 VAL n 1 6 LYS n 1 7 HIS n 1 8 GLU n 1 9 GLY n 1 10 LYS n 1 11 VAL n 1 12 THR n 1 13 GLY n 1 14 TYR n 1 15 ALA n 1 16 CYS n 1 17 LEU n 1 18 VAL n 1 19 GLY n 1 20 ASP n 1 21 LYS n 1 22 VAL n 1 23 MET n 1 24 LYS n 1 25 PRO n 1 26 ALA n 1 27 HIS n 1 28 VAL n 1 29 LYS n 1 30 GLY n 1 31 VAL n 1 32 ILE n 1 33 ASP n 1 34 ASN n 1 35 ALA n 1 36 ASP n 1 37 LEU n 1 38 ALA n 1 39 LYS n 1 40 LEU n 1 41 ALA n 1 42 PHE n 1 43 LYS n 1 44 LYS n 1 45 SER n 1 46 SER n 1 47 LYS n 1 48 TYR n 1 49 ASP n 1 50 LEU n 1 51 GLU n 1 52 CYS n 1 53 ALA n 1 54 GLN n 1 55 ILE n 1 56 PRO n 1 57 VAL n 1 58 HIS n 1 59 MET n 1 60 ARG n 1 61 SER n 1 62 ASP n 1 63 ALA n 1 64 SER n 1 65 LYS n 1 66 TYR n 1 67 THR n 1 68 HIS n 1 69 GLU n 1 70 LYS n 1 71 PRO n 1 72 GLU n 1 73 GLY n 1 74 HIS n 1 75 TYR n 1 76 ASN n 1 77 TRP n 1 78 HIS n 1 79 HIS n 1 80 GLY n 1 81 ALA n 1 82 VAL n 1 83 GLN n 1 84 TYR n 1 85 SER n 1 86 GLY n 1 87 GLY n 1 88 ARG n 1 89 PHE n 1 90 THR n 1 91 ILE n 1 92 PRO n 1 93 THR n 1 94 GLY n 1 95 ALA n 1 96 GLY n 1 97 LYS n 1 98 PRO n 1 99 GLY n 1 100 ASP n 1 101 SER n 1 102 GLY n 1 103 ARG n 1 104 PRO n 1 105 ILE n 1 106 PHE n 1 107 ASP n 1 108 ASN n 1 109 LYS n 1 110 GLY n 1 111 ARG n 1 112 VAL n 1 113 VAL n 1 114 ALA n 1 115 ILE n 1 116 VAL n 1 117 LEU n 1 118 GLY n 1 119 GLY n 1 120 ALA n 1 121 ASN n 1 122 GLU n 1 123 GLY n 1 124 SER n 1 125 ARG n 1 126 THR n 1 127 ALA n 1 128 LEU n 1 129 SER n 1 130 VAL n 1 131 VAL n 1 132 THR n 1 133 TRP n 1 134 ASN n 1 135 LYS n 1 136 ASP n 1 137 MET n 1 138 VAL n 1 139 THR n 1 140 ARG n 1 141 VAL n 1 142 THR n 1 143 PRO n 1 144 GLU n 1 145 GLY n 1 146 SER n 1 147 GLU n 1 148 GLU n 1 149 TRP n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name SFV _entity_src_nat.pdbx_organism_scientific 'SEMLIKI FOREST VIRUS' _entity_src_nat.pdbx_ncbi_taxonomy_id 11033 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line 'BABY HAMSTER KIDNEY 21' _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location EXTRACELLULAR _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POLS_SFV _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P03315 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1DYL A 1 ? 149 ? P03315 119 ? 267 ? 119 267 2 1 1DYL B 1 ? 149 ? P03315 119 ? 267 ? 119 267 3 1 1DYL C 1 ? 149 ? P03315 119 ? 267 ? 119 267 4 1 1DYL D 1 ? 149 ? P03315 119 ? 267 ? 119 267 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1DYL _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 1DYL _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 9.00 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 4563 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 4563 _refine_hist.d_res_high 9.00 _refine_hist.d_res_low . # _struct.entry_id 1DYL _struct.title ;9 ANGSTROM RESOLUTION CRYO-EM RECONSTRUCTION STRUCTURE OF SEMLIKI FOREST VIRUS (SFV) AND FITTING OF THE CAPSID PROTEIN STRUCTURE IN THE EM DENSITY ; _struct.pdbx_descriptor 'NUCLEOCAPSID PROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DYL _struct_keywords.pdbx_keywords 'VIRUS/VIRAL PROTEIN' _struct_keywords.text ;VIRUS/VIRAL PROTEIN, ALPHAVIRUS, SFV, CRYO-EM, IMAGE RECONSTRUCTION, ENVELOPED VIRUS, CAPSID PROTEIN, ICOSAHEDRAL VIRUS, VIRUS-VIRAL PROTEIN complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 34 ? LYS A 39 ? ASN A 152 LYS A 157 1 ? 6 HELX_P HELX_P2 2 PRO A 56 ? ALA A 63 ? PRO A 174 ALA A 181 5 ? 8 HELX_P HELX_P3 3 ASN B 34 ? LYS B 39 ? ASN B 152 LYS B 157 1 ? 6 HELX_P HELX_P4 4 PRO B 56 ? ALA B 63 ? PRO B 174 ALA B 181 5 ? 8 HELX_P HELX_P5 5 ASN C 34 ? LYS C 39 ? ASN C 152 LYS C 157 1 ? 6 HELX_P HELX_P6 6 PRO C 56 ? ALA C 63 ? PRO C 174 ALA C 181 5 ? 8 HELX_P HELX_P7 7 ASN D 34 ? LYS D 39 ? ASN D 152 LYS D 157 1 ? 6 HELX_P HELX_P8 8 PRO D 56 ? ALA D 63 ? PRO D 174 ALA D 181 5 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 1 SG ? ? ? 1_555 A CYS 16 SG ? ? A CYS 119 A CYS 134 1_555 ? ? ? ? ? ? ? 1.992 ? disulf2 disulf ? ? B CYS 1 SG ? ? ? 1_555 B CYS 16 SG ? ? B CYS 119 B CYS 134 1_555 ? ? ? ? ? ? ? 1.991 ? disulf3 disulf ? ? C CYS 1 SG ? ? ? 1_555 C CYS 16 SG ? ? C CYS 119 C CYS 134 1_555 ? ? ? ? ? ? ? 1.991 ? disulf4 disulf ? ? D CYS 1 SG ? ? ? 1_555 D CYS 16 SG ? ? D CYS 119 D CYS 134 1_555 ? ? ? ? ? ? ? 1.991 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 3 ? AB ? 4 ? AC ? 4 ? BA ? 3 ? BB ? 4 ? BC ? 4 ? CA ? 3 ? CB ? 4 ? CC ? 4 ? DA ? 3 ? DB ? 4 ? DC ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AC 3 4 ? anti-parallel BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BB 1 2 ? anti-parallel BB 2 3 ? anti-parallel BB 3 4 ? anti-parallel BC 1 2 ? anti-parallel BC 2 3 ? anti-parallel BC 3 4 ? anti-parallel CA 1 2 ? anti-parallel CA 2 3 ? anti-parallel CB 1 2 ? anti-parallel CB 2 3 ? anti-parallel CB 3 4 ? anti-parallel CC 1 2 ? anti-parallel CC 2 3 ? anti-parallel CC 3 4 ? anti-parallel DA 1 2 ? anti-parallel DA 2 3 ? anti-parallel DB 1 2 ? anti-parallel DB 2 3 ? anti-parallel DB 3 4 ? anti-parallel DC 1 2 ? anti-parallel DC 2 3 ? anti-parallel DC 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 10 ? ALA A 15 ? LYS A 128 ALA A 133 AA 2 PHE A 3 ? HIS A 7 ? PHE A 121 HIS A 125 AA 3 VAL A 31 ? ILE A 32 ? VAL A 149 ILE A 150 AB 1 LEU A 17 ? VAL A 18 ? LEU A 135 VAL A 136 AB 2 LYS A 21 ? VAL A 22 ? LYS A 139 VAL A 140 AB 3 LEU A 50 ? GLN A 54 ? LEU A 168 GLN A 172 AB 4 LYS A 43 ? SER A 45 ? LYS A 161 SER A 163 AC 1 GLY A 73 ? TRP A 77 ? GLY A 191 TRP A 195 AC 2 GLY A 80 ? TYR A 84 ? GLY A 198 TYR A 202 AC 3 PHE A 89 ? PRO A 92 ? PHE A 207 PRO A 210 AC 4 ARG A 125 ? TRP A 133 ? ARG A 243 TRP A 251 BA 1 LYS B 10 ? ALA B 15 ? LYS B 128 ALA B 133 BA 2 PHE B 3 ? HIS B 7 ? PHE B 121 HIS B 125 BA 3 VAL B 31 ? ILE B 32 ? VAL B 149 ILE B 150 BB 1 LEU B 17 ? VAL B 18 ? LEU B 135 VAL B 136 BB 2 LYS B 21 ? VAL B 22 ? LYS B 139 VAL B 140 BB 3 LEU B 50 ? GLN B 54 ? LEU B 168 GLN B 172 BB 4 LYS B 43 ? SER B 45 ? LYS B 161 SER B 163 BC 1 GLY B 73 ? TRP B 77 ? GLY B 191 TRP B 195 BC 2 GLY B 80 ? TYR B 84 ? GLY B 198 TYR B 202 BC 3 PHE B 89 ? PRO B 92 ? PHE B 207 PRO B 210 BC 4 ARG B 125 ? TRP B 133 ? ARG B 243 TRP B 251 CA 1 LYS C 10 ? ALA C 15 ? LYS C 128 ALA C 133 CA 2 PHE C 3 ? HIS C 7 ? PHE C 121 HIS C 125 CA 3 VAL C 31 ? ILE C 32 ? VAL C 149 ILE C 150 CB 1 LEU C 17 ? VAL C 18 ? LEU C 135 VAL C 136 CB 2 LYS C 21 ? VAL C 22 ? LYS C 139 VAL C 140 CB 3 LEU C 50 ? GLN C 54 ? LEU C 168 GLN C 172 CB 4 LYS C 43 ? SER C 45 ? LYS C 161 SER C 163 CC 1 GLY C 73 ? TRP C 77 ? GLY C 191 TRP C 195 CC 2 GLY C 80 ? TYR C 84 ? GLY C 198 TYR C 202 CC 3 PHE C 89 ? PRO C 92 ? PHE C 207 PRO C 210 CC 4 ARG C 125 ? TRP C 133 ? ARG C 243 TRP C 251 DA 1 LYS D 10 ? ALA D 15 ? LYS D 128 ALA D 133 DA 2 PHE D 3 ? HIS D 7 ? PHE D 121 HIS D 125 DA 3 VAL D 31 ? ILE D 32 ? VAL D 149 ILE D 150 DB 1 LEU D 17 ? VAL D 18 ? LEU D 135 VAL D 136 DB 2 LYS D 21 ? VAL D 22 ? LYS D 139 VAL D 140 DB 3 LEU D 50 ? GLN D 54 ? LEU D 168 GLN D 172 DB 4 LYS D 43 ? SER D 45 ? LYS D 161 SER D 163 DC 1 GLY D 73 ? TRP D 77 ? GLY D 191 TRP D 195 DC 2 GLY D 80 ? TYR D 84 ? GLY D 198 TYR D 202 DC 3 PHE D 89 ? PRO D 92 ? PHE D 207 PRO D 210 DC 4 ARG D 125 ? TRP D 133 ? ARG D 243 TRP D 251 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ALA A 15 ? N ALA A 133 O PHE A 3 ? O PHE A 121 AA 2 3 N LYS A 6 ? N LYS A 124 O VAL A 31 ? O VAL A 149 AB 1 2 N VAL A 18 ? N VAL A 136 O LYS A 21 ? O LYS A 139 AB 2 3 N VAL A 22 ? N VAL A 140 O ALA A 53 ? O ALA A 171 AB 3 4 N CYS A 52 ? N CYS A 170 O LYS A 43 ? O LYS A 161 AC 1 2 N TRP A 77 ? N TRP A 195 O GLY A 80 ? O GLY A 198 AC 2 3 N GLN A 83 ? N GLN A 201 O THR A 90 ? O THR A 208 AC 3 4 N ILE A 91 ? N ILE A 209 O THR A 126 ? O THR A 244 BA 1 2 N ALA B 15 ? N ALA B 133 O PHE B 3 ? O PHE B 121 BA 2 3 N LYS B 6 ? N LYS B 124 O VAL B 31 ? O VAL B 149 BB 1 2 N VAL B 18 ? N VAL B 136 O LYS B 21 ? O LYS B 139 BB 2 3 N VAL B 22 ? N VAL B 140 O ALA B 53 ? O ALA B 171 BB 3 4 N CYS B 52 ? N CYS B 170 O LYS B 43 ? O LYS B 161 BC 1 2 N TRP B 77 ? N TRP B 195 O GLY B 80 ? O GLY B 198 BC 2 3 N GLN B 83 ? N GLN B 201 O THR B 90 ? O THR B 208 BC 3 4 N ILE B 91 ? N ILE B 209 O THR B 126 ? O THR B 244 CA 1 2 N ALA C 15 ? N ALA C 133 O PHE C 3 ? O PHE C 121 CA 2 3 N LYS C 6 ? N LYS C 124 O VAL C 31 ? O VAL C 149 CB 1 2 N VAL C 18 ? N VAL C 136 O LYS C 21 ? O LYS C 139 CB 2 3 N VAL C 22 ? N VAL C 140 O ALA C 53 ? O ALA C 171 CB 3 4 N CYS C 52 ? N CYS C 170 O LYS C 43 ? O LYS C 161 CC 1 2 N TRP C 77 ? N TRP C 195 O GLY C 80 ? O GLY C 198 CC 2 3 N GLN C 83 ? N GLN C 201 O THR C 90 ? O THR C 208 CC 3 4 N ILE C 91 ? N ILE C 209 O THR C 126 ? O THR C 244 DA 1 2 N ALA D 15 ? N ALA D 133 O PHE D 3 ? O PHE D 121 DA 2 3 N LYS D 6 ? N LYS D 124 O VAL D 31 ? O VAL D 149 DB 1 2 N VAL D 18 ? N VAL D 136 O LYS D 21 ? O LYS D 139 DB 2 3 N VAL D 22 ? N VAL D 140 O ALA D 53 ? O ALA D 171 DB 3 4 N CYS D 52 ? N CYS D 170 O LYS D 43 ? O LYS D 161 DC 1 2 N TRP D 77 ? N TRP D 195 O GLY D 80 ? O GLY D 198 DC 2 3 N GLN D 83 ? N GLN D 201 O THR D 90 ? O THR D 208 DC 3 4 N ILE D 91 ? N ILE D 209 O THR D 126 ? O THR D 244 # _database_PDB_matrix.entry_id 1DYL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1DYL _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CYS 1 119 119 CYS CYS A . n A 1 2 ILE 2 120 120 ILE ILE A . n A 1 3 PHE 3 121 121 PHE PHE A . n A 1 4 GLU 4 122 122 GLU GLU A . n A 1 5 VAL 5 123 123 VAL VAL A . n A 1 6 LYS 6 124 124 LYS LYS A . n A 1 7 HIS 7 125 125 HIS HIS A . n A 1 8 GLU 8 126 126 GLU GLU A . n A 1 9 GLY 9 127 127 GLY GLY A . n A 1 10 LYS 10 128 128 LYS LYS A . n A 1 11 VAL 11 129 129 VAL VAL A . n A 1 12 THR 12 130 130 THR THR A . n A 1 13 GLY 13 131 131 GLY GLY A . n A 1 14 TYR 14 132 132 TYR TYR A . n A 1 15 ALA 15 133 133 ALA ALA A . n A 1 16 CYS 16 134 134 CYS CYS A . n A 1 17 LEU 17 135 135 LEU LEU A . n A 1 18 VAL 18 136 136 VAL VAL A . n A 1 19 GLY 19 137 137 GLY GLY A . n A 1 20 ASP 20 138 138 ASP ASP A . n A 1 21 LYS 21 139 139 LYS LYS A . n A 1 22 VAL 22 140 140 VAL VAL A . n A 1 23 MET 23 141 141 MET MET A . n A 1 24 LYS 24 142 142 LYS LYS A . n A 1 25 PRO 25 143 143 PRO PRO A . n A 1 26 ALA 26 144 144 ALA ALA A . n A 1 27 HIS 27 145 145 HIS HIS A . n A 1 28 VAL 28 146 146 VAL VAL A . n A 1 29 LYS 29 147 147 LYS LYS A . n A 1 30 GLY 30 148 148 GLY GLY A . n A 1 31 VAL 31 149 149 VAL VAL A . n A 1 32 ILE 32 150 150 ILE ILE A . n A 1 33 ASP 33 151 151 ASP ASP A . n A 1 34 ASN 34 152 152 ASN ASN A . n A 1 35 ALA 35 153 153 ALA ALA A . n A 1 36 ASP 36 154 154 ASP ASP A . n A 1 37 LEU 37 155 155 LEU LEU A . n A 1 38 ALA 38 156 156 ALA ALA A . n A 1 39 LYS 39 157 157 LYS LYS A . n A 1 40 LEU 40 158 158 LEU LEU A . n A 1 41 ALA 41 159 159 ALA ALA A . n A 1 42 PHE 42 160 160 PHE PHE A . n A 1 43 LYS 43 161 161 LYS LYS A . n A 1 44 LYS 44 162 162 LYS LYS A . n A 1 45 SER 45 163 163 SER SER A . n A 1 46 SER 46 164 164 SER SER A . n A 1 47 LYS 47 165 165 LYS LYS A . n A 1 48 TYR 48 166 166 TYR TYR A . n A 1 49 ASP 49 167 167 ASP ASP A . n A 1 50 LEU 50 168 168 LEU LEU A . n A 1 51 GLU 51 169 169 GLU GLU A . n A 1 52 CYS 52 170 170 CYS CYS A . n A 1 53 ALA 53 171 171 ALA ALA A . n A 1 54 GLN 54 172 172 GLN GLN A . n A 1 55 ILE 55 173 173 ILE ILE A . n A 1 56 PRO 56 174 174 PRO PRO A . n A 1 57 VAL 57 175 175 VAL VAL A . n A 1 58 HIS 58 176 176 HIS HIS A . n A 1 59 MET 59 177 177 MET MET A . n A 1 60 ARG 60 178 178 ARG ARG A . n A 1 61 SER 61 179 179 SER SER A . n A 1 62 ASP 62 180 180 ASP ASP A . n A 1 63 ALA 63 181 181 ALA ALA A . n A 1 64 SER 64 182 182 SER SER A . n A 1 65 LYS 65 183 183 LYS LYS A . n A 1 66 TYR 66 184 184 TYR TYR A . n A 1 67 THR 67 185 185 THR THR A . n A 1 68 HIS 68 186 186 HIS HIS A . n A 1 69 GLU 69 187 187 GLU GLU A . n A 1 70 LYS 70 188 188 LYS LYS A . n A 1 71 PRO 71 189 189 PRO PRO A . n A 1 72 GLU 72 190 190 GLU GLU A . n A 1 73 GLY 73 191 191 GLY GLY A . n A 1 74 HIS 74 192 192 HIS HIS A . n A 1 75 TYR 75 193 193 TYR TYR A . n A 1 76 ASN 76 194 194 ASN ASN A . n A 1 77 TRP 77 195 195 TRP TRP A . n A 1 78 HIS 78 196 196 HIS HIS A . n A 1 79 HIS 79 197 197 HIS HIS A . n A 1 80 GLY 80 198 198 GLY GLY A . n A 1 81 ALA 81 199 199 ALA ALA A . n A 1 82 VAL 82 200 200 VAL VAL A . n A 1 83 GLN 83 201 201 GLN GLN A . n A 1 84 TYR 84 202 202 TYR TYR A . n A 1 85 SER 85 203 203 SER SER A . n A 1 86 GLY 86 204 204 GLY GLY A . n A 1 87 GLY 87 205 205 GLY GLY A . n A 1 88 ARG 88 206 206 ARG ARG A . n A 1 89 PHE 89 207 207 PHE PHE A . n A 1 90 THR 90 208 208 THR THR A . n A 1 91 ILE 91 209 209 ILE ILE A . n A 1 92 PRO 92 210 210 PRO PRO A . n A 1 93 THR 93 211 211 THR THR A . n A 1 94 GLY 94 212 212 GLY GLY A . n A 1 95 ALA 95 213 213 ALA ALA A . n A 1 96 GLY 96 214 214 GLY GLY A . n A 1 97 LYS 97 215 215 LYS LYS A . n A 1 98 PRO 98 216 216 PRO PRO A . n A 1 99 GLY 99 217 217 GLY GLY A . n A 1 100 ASP 100 218 218 ASP ASP A . n A 1 101 SER 101 219 219 SER SER A . n A 1 102 GLY 102 220 220 GLY GLY A . n A 1 103 ARG 103 221 221 ARG ARG A . n A 1 104 PRO 104 222 222 PRO PRO A . n A 1 105 ILE 105 223 223 ILE ILE A . n A 1 106 PHE 106 224 224 PHE PHE A . n A 1 107 ASP 107 225 225 ASP ASP A . n A 1 108 ASN 108 226 226 ASN ASN A . n A 1 109 LYS 109 227 227 LYS LYS A . n A 1 110 GLY 110 228 228 GLY GLY A . n A 1 111 ARG 111 229 229 ARG ARG A . n A 1 112 VAL 112 230 230 VAL VAL A . n A 1 113 VAL 113 231 231 VAL VAL A . n A 1 114 ALA 114 232 232 ALA ALA A . n A 1 115 ILE 115 233 233 ILE ILE A . n A 1 116 VAL 116 234 234 VAL VAL A . n A 1 117 LEU 117 235 235 LEU LEU A . n A 1 118 GLY 118 236 236 GLY GLY A . n A 1 119 GLY 119 237 237 GLY GLY A . n A 1 120 ALA 120 238 238 ALA ALA A . n A 1 121 ASN 121 239 239 ASN ASN A . n A 1 122 GLU 122 240 240 GLU GLU A . n A 1 123 GLY 123 241 241 GLY GLY A . n A 1 124 SER 124 242 242 SER SER A . n A 1 125 ARG 125 243 243 ARG ARG A . n A 1 126 THR 126 244 244 THR THR A . n A 1 127 ALA 127 245 245 ALA ALA A . n A 1 128 LEU 128 246 246 LEU LEU A . n A 1 129 SER 129 247 247 SER SER A . n A 1 130 VAL 130 248 248 VAL VAL A . n A 1 131 VAL 131 249 249 VAL VAL A . n A 1 132 THR 132 250 250 THR THR A . n A 1 133 TRP 133 251 251 TRP TRP A . n A 1 134 ASN 134 252 252 ASN ASN A . n A 1 135 LYS 135 253 253 LYS LYS A . n A 1 136 ASP 136 254 254 ASP ASP A . n A 1 137 MET 137 255 255 MET MET A . n A 1 138 VAL 138 256 256 VAL VAL A . n A 1 139 THR 139 257 257 THR THR A . n A 1 140 ARG 140 258 258 ARG ARG A . n A 1 141 VAL 141 259 259 VAL VAL A . n A 1 142 THR 142 260 260 THR THR A . n A 1 143 PRO 143 261 261 PRO PRO A . n A 1 144 GLU 144 262 262 GLU GLU A . n A 1 145 GLY 145 263 263 GLY GLY A . n A 1 146 SER 146 264 264 SER SER A . n A 1 147 GLU 147 265 265 GLU GLU A . n A 1 148 GLU 148 266 266 GLU GLU A . n A 1 149 TRP 149 267 267 TRP TRP A . n B 1 1 CYS 1 119 119 CYS CYS B . n B 1 2 ILE 2 120 120 ILE ILE B . n B 1 3 PHE 3 121 121 PHE PHE B . n B 1 4 GLU 4 122 122 GLU GLU B . n B 1 5 VAL 5 123 123 VAL VAL B . n B 1 6 LYS 6 124 124 LYS LYS B . n B 1 7 HIS 7 125 125 HIS HIS B . n B 1 8 GLU 8 126 126 GLU GLU B . n B 1 9 GLY 9 127 127 GLY GLY B . n B 1 10 LYS 10 128 128 LYS LYS B . n B 1 11 VAL 11 129 129 VAL VAL B . n B 1 12 THR 12 130 130 THR THR B . n B 1 13 GLY 13 131 131 GLY GLY B . n B 1 14 TYR 14 132 132 TYR TYR B . n B 1 15 ALA 15 133 133 ALA ALA B . n B 1 16 CYS 16 134 134 CYS CYS B . n B 1 17 LEU 17 135 135 LEU LEU B . n B 1 18 VAL 18 136 136 VAL VAL B . n B 1 19 GLY 19 137 137 GLY GLY B . n B 1 20 ASP 20 138 138 ASP ASP B . n B 1 21 LYS 21 139 139 LYS LYS B . n B 1 22 VAL 22 140 140 VAL VAL B . n B 1 23 MET 23 141 141 MET MET B . n B 1 24 LYS 24 142 142 LYS LYS B . n B 1 25 PRO 25 143 143 PRO PRO B . n B 1 26 ALA 26 144 144 ALA ALA B . n B 1 27 HIS 27 145 145 HIS HIS B . n B 1 28 VAL 28 146 146 VAL VAL B . n B 1 29 LYS 29 147 147 LYS LYS B . n B 1 30 GLY 30 148 148 GLY GLY B . n B 1 31 VAL 31 149 149 VAL VAL B . n B 1 32 ILE 32 150 150 ILE ILE B . n B 1 33 ASP 33 151 151 ASP ASP B . n B 1 34 ASN 34 152 152 ASN ASN B . n B 1 35 ALA 35 153 153 ALA ALA B . n B 1 36 ASP 36 154 154 ASP ASP B . n B 1 37 LEU 37 155 155 LEU LEU B . n B 1 38 ALA 38 156 156 ALA ALA B . n B 1 39 LYS 39 157 157 LYS LYS B . n B 1 40 LEU 40 158 158 LEU LEU B . n B 1 41 ALA 41 159 159 ALA ALA B . n B 1 42 PHE 42 160 160 PHE PHE B . n B 1 43 LYS 43 161 161 LYS LYS B . n B 1 44 LYS 44 162 162 LYS LYS B . n B 1 45 SER 45 163 163 SER SER B . n B 1 46 SER 46 164 164 SER SER B . n B 1 47 LYS 47 165 165 LYS LYS B . n B 1 48 TYR 48 166 166 TYR TYR B . n B 1 49 ASP 49 167 167 ASP ASP B . n B 1 50 LEU 50 168 168 LEU LEU B . n B 1 51 GLU 51 169 169 GLU GLU B . n B 1 52 CYS 52 170 170 CYS CYS B . n B 1 53 ALA 53 171 171 ALA ALA B . n B 1 54 GLN 54 172 172 GLN GLN B . n B 1 55 ILE 55 173 173 ILE ILE B . n B 1 56 PRO 56 174 174 PRO PRO B . n B 1 57 VAL 57 175 175 VAL VAL B . n B 1 58 HIS 58 176 176 HIS HIS B . n B 1 59 MET 59 177 177 MET MET B . n B 1 60 ARG 60 178 178 ARG ARG B . n B 1 61 SER 61 179 179 SER SER B . n B 1 62 ASP 62 180 180 ASP ASP B . n B 1 63 ALA 63 181 181 ALA ALA B . n B 1 64 SER 64 182 182 SER SER B . n B 1 65 LYS 65 183 183 LYS LYS B . n B 1 66 TYR 66 184 184 TYR TYR B . n B 1 67 THR 67 185 185 THR THR B . n B 1 68 HIS 68 186 186 HIS HIS B . n B 1 69 GLU 69 187 187 GLU GLU B . n B 1 70 LYS 70 188 188 LYS LYS B . n B 1 71 PRO 71 189 189 PRO PRO B . n B 1 72 GLU 72 190 190 GLU GLU B . n B 1 73 GLY 73 191 191 GLY GLY B . n B 1 74 HIS 74 192 192 HIS HIS B . n B 1 75 TYR 75 193 193 TYR TYR B . n B 1 76 ASN 76 194 194 ASN ASN B . n B 1 77 TRP 77 195 195 TRP TRP B . n B 1 78 HIS 78 196 196 HIS HIS B . n B 1 79 HIS 79 197 197 HIS HIS B . n B 1 80 GLY 80 198 198 GLY GLY B . n B 1 81 ALA 81 199 199 ALA ALA B . n B 1 82 VAL 82 200 200 VAL VAL B . n B 1 83 GLN 83 201 201 GLN GLN B . n B 1 84 TYR 84 202 202 TYR TYR B . n B 1 85 SER 85 203 203 SER SER B . n B 1 86 GLY 86 204 204 GLY GLY B . n B 1 87 GLY 87 205 205 GLY GLY B . n B 1 88 ARG 88 206 206 ARG ARG B . n B 1 89 PHE 89 207 207 PHE PHE B . n B 1 90 THR 90 208 208 THR THR B . n B 1 91 ILE 91 209 209 ILE ILE B . n B 1 92 PRO 92 210 210 PRO PRO B . n B 1 93 THR 93 211 211 THR THR B . n B 1 94 GLY 94 212 212 GLY GLY B . n B 1 95 ALA 95 213 213 ALA ALA B . n B 1 96 GLY 96 214 214 GLY GLY B . n B 1 97 LYS 97 215 215 LYS LYS B . n B 1 98 PRO 98 216 216 PRO PRO B . n B 1 99 GLY 99 217 217 GLY GLY B . n B 1 100 ASP 100 218 218 ASP ASP B . n B 1 101 SER 101 219 219 SER SER B . n B 1 102 GLY 102 220 220 GLY GLY B . n B 1 103 ARG 103 221 221 ARG ARG B . n B 1 104 PRO 104 222 222 PRO PRO B . n B 1 105 ILE 105 223 223 ILE ILE B . n B 1 106 PHE 106 224 224 PHE PHE B . n B 1 107 ASP 107 225 225 ASP ASP B . n B 1 108 ASN 108 226 226 ASN ASN B . n B 1 109 LYS 109 227 227 LYS LYS B . n B 1 110 GLY 110 228 228 GLY GLY B . n B 1 111 ARG 111 229 229 ARG ARG B . n B 1 112 VAL 112 230 230 VAL VAL B . n B 1 113 VAL 113 231 231 VAL VAL B . n B 1 114 ALA 114 232 232 ALA ALA B . n B 1 115 ILE 115 233 233 ILE ILE B . n B 1 116 VAL 116 234 234 VAL VAL B . n B 1 117 LEU 117 235 235 LEU LEU B . n B 1 118 GLY 118 236 236 GLY GLY B . n B 1 119 GLY 119 237 237 GLY GLY B . n B 1 120 ALA 120 238 238 ALA ALA B . n B 1 121 ASN 121 239 239 ASN ASN B . n B 1 122 GLU 122 240 240 GLU GLU B . n B 1 123 GLY 123 241 241 GLY GLY B . n B 1 124 SER 124 242 242 SER SER B . n B 1 125 ARG 125 243 243 ARG ARG B . n B 1 126 THR 126 244 244 THR THR B . n B 1 127 ALA 127 245 245 ALA ALA B . n B 1 128 LEU 128 246 246 LEU LEU B . n B 1 129 SER 129 247 247 SER SER B . n B 1 130 VAL 130 248 248 VAL VAL B . n B 1 131 VAL 131 249 249 VAL VAL B . n B 1 132 THR 132 250 250 THR THR B . n B 1 133 TRP 133 251 251 TRP TRP B . n B 1 134 ASN 134 252 252 ASN ASN B . n B 1 135 LYS 135 253 253 LYS LYS B . n B 1 136 ASP 136 254 254 ASP ASP B . n B 1 137 MET 137 255 255 MET MET B . n B 1 138 VAL 138 256 256 VAL VAL B . n B 1 139 THR 139 257 257 THR THR B . n B 1 140 ARG 140 258 258 ARG ARG B . n B 1 141 VAL 141 259 259 VAL VAL B . n B 1 142 THR 142 260 260 THR THR B . n B 1 143 PRO 143 261 261 PRO PRO B . n B 1 144 GLU 144 262 262 GLU GLU B . n B 1 145 GLY 145 263 263 GLY GLY B . n B 1 146 SER 146 264 264 SER SER B . n B 1 147 GLU 147 265 265 GLU GLU B . n B 1 148 GLU 148 266 266 GLU GLU B . n B 1 149 TRP 149 267 267 TRP TRP B . n C 1 1 CYS 1 119 119 CYS CYS C . n C 1 2 ILE 2 120 120 ILE ILE C . n C 1 3 PHE 3 121 121 PHE PHE C . n C 1 4 GLU 4 122 122 GLU GLU C . n C 1 5 VAL 5 123 123 VAL VAL C . n C 1 6 LYS 6 124 124 LYS LYS C . n C 1 7 HIS 7 125 125 HIS HIS C . n C 1 8 GLU 8 126 126 GLU GLU C . n C 1 9 GLY 9 127 127 GLY GLY C . n C 1 10 LYS 10 128 128 LYS LYS C . n C 1 11 VAL 11 129 129 VAL VAL C . n C 1 12 THR 12 130 130 THR THR C . n C 1 13 GLY 13 131 131 GLY GLY C . n C 1 14 TYR 14 132 132 TYR TYR C . n C 1 15 ALA 15 133 133 ALA ALA C . n C 1 16 CYS 16 134 134 CYS CYS C . n C 1 17 LEU 17 135 135 LEU LEU C . n C 1 18 VAL 18 136 136 VAL VAL C . n C 1 19 GLY 19 137 137 GLY GLY C . n C 1 20 ASP 20 138 138 ASP ASP C . n C 1 21 LYS 21 139 139 LYS LYS C . n C 1 22 VAL 22 140 140 VAL VAL C . n C 1 23 MET 23 141 141 MET MET C . n C 1 24 LYS 24 142 142 LYS LYS C . n C 1 25 PRO 25 143 143 PRO PRO C . n C 1 26 ALA 26 144 144 ALA ALA C . n C 1 27 HIS 27 145 145 HIS HIS C . n C 1 28 VAL 28 146 146 VAL VAL C . n C 1 29 LYS 29 147 147 LYS LYS C . n C 1 30 GLY 30 148 148 GLY GLY C . n C 1 31 VAL 31 149 149 VAL VAL C . n C 1 32 ILE 32 150 150 ILE ILE C . n C 1 33 ASP 33 151 151 ASP ASP C . n C 1 34 ASN 34 152 152 ASN ASN C . n C 1 35 ALA 35 153 153 ALA ALA C . n C 1 36 ASP 36 154 154 ASP ASP C . n C 1 37 LEU 37 155 155 LEU LEU C . n C 1 38 ALA 38 156 156 ALA ALA C . n C 1 39 LYS 39 157 157 LYS LYS C . n C 1 40 LEU 40 158 158 LEU LEU C . n C 1 41 ALA 41 159 159 ALA ALA C . n C 1 42 PHE 42 160 160 PHE PHE C . n C 1 43 LYS 43 161 161 LYS LYS C . n C 1 44 LYS 44 162 162 LYS LYS C . n C 1 45 SER 45 163 163 SER SER C . n C 1 46 SER 46 164 164 SER SER C . n C 1 47 LYS 47 165 165 LYS LYS C . n C 1 48 TYR 48 166 166 TYR TYR C . n C 1 49 ASP 49 167 167 ASP ASP C . n C 1 50 LEU 50 168 168 LEU LEU C . n C 1 51 GLU 51 169 169 GLU GLU C . n C 1 52 CYS 52 170 170 CYS CYS C . n C 1 53 ALA 53 171 171 ALA ALA C . n C 1 54 GLN 54 172 172 GLN GLN C . n C 1 55 ILE 55 173 173 ILE ILE C . n C 1 56 PRO 56 174 174 PRO PRO C . n C 1 57 VAL 57 175 175 VAL VAL C . n C 1 58 HIS 58 176 176 HIS HIS C . n C 1 59 MET 59 177 177 MET MET C . n C 1 60 ARG 60 178 178 ARG ARG C . n C 1 61 SER 61 179 179 SER SER C . n C 1 62 ASP 62 180 180 ASP ASP C . n C 1 63 ALA 63 181 181 ALA ALA C . n C 1 64 SER 64 182 182 SER SER C . n C 1 65 LYS 65 183 183 LYS LYS C . n C 1 66 TYR 66 184 184 TYR TYR C . n C 1 67 THR 67 185 185 THR THR C . n C 1 68 HIS 68 186 186 HIS HIS C . n C 1 69 GLU 69 187 187 GLU GLU C . n C 1 70 LYS 70 188 188 LYS LYS C . n C 1 71 PRO 71 189 189 PRO PRO C . n C 1 72 GLU 72 190 190 GLU GLU C . n C 1 73 GLY 73 191 191 GLY GLY C . n C 1 74 HIS 74 192 192 HIS HIS C . n C 1 75 TYR 75 193 193 TYR TYR C . n C 1 76 ASN 76 194 194 ASN ASN C . n C 1 77 TRP 77 195 195 TRP TRP C . n C 1 78 HIS 78 196 196 HIS HIS C . n C 1 79 HIS 79 197 197 HIS HIS C . n C 1 80 GLY 80 198 198 GLY GLY C . n C 1 81 ALA 81 199 199 ALA ALA C . n C 1 82 VAL 82 200 200 VAL VAL C . n C 1 83 GLN 83 201 201 GLN GLN C . n C 1 84 TYR 84 202 202 TYR TYR C . n C 1 85 SER 85 203 203 SER SER C . n C 1 86 GLY 86 204 204 GLY GLY C . n C 1 87 GLY 87 205 205 GLY GLY C . n C 1 88 ARG 88 206 206 ARG ARG C . n C 1 89 PHE 89 207 207 PHE PHE C . n C 1 90 THR 90 208 208 THR THR C . n C 1 91 ILE 91 209 209 ILE ILE C . n C 1 92 PRO 92 210 210 PRO PRO C . n C 1 93 THR 93 211 211 THR THR C . n C 1 94 GLY 94 212 212 GLY GLY C . n C 1 95 ALA 95 213 213 ALA ALA C . n C 1 96 GLY 96 214 214 GLY GLY C . n C 1 97 LYS 97 215 215 LYS LYS C . n C 1 98 PRO 98 216 216 PRO PRO C . n C 1 99 GLY 99 217 217 GLY GLY C . n C 1 100 ASP 100 218 218 ASP ASP C . n C 1 101 SER 101 219 219 SER SER C . n C 1 102 GLY 102 220 220 GLY GLY C . n C 1 103 ARG 103 221 221 ARG ARG C . n C 1 104 PRO 104 222 222 PRO PRO C . n C 1 105 ILE 105 223 223 ILE ILE C . n C 1 106 PHE 106 224 224 PHE PHE C . n C 1 107 ASP 107 225 225 ASP ASP C . n C 1 108 ASN 108 226 226 ASN ASN C . n C 1 109 LYS 109 227 227 LYS LYS C . n C 1 110 GLY 110 228 228 GLY GLY C . n C 1 111 ARG 111 229 229 ARG ARG C . n C 1 112 VAL 112 230 230 VAL VAL C . n C 1 113 VAL 113 231 231 VAL VAL C . n C 1 114 ALA 114 232 232 ALA ALA C . n C 1 115 ILE 115 233 233 ILE ILE C . n C 1 116 VAL 116 234 234 VAL VAL C . n C 1 117 LEU 117 235 235 LEU LEU C . n C 1 118 GLY 118 236 236 GLY GLY C . n C 1 119 GLY 119 237 237 GLY GLY C . n C 1 120 ALA 120 238 238 ALA ALA C . n C 1 121 ASN 121 239 239 ASN ASN C . n C 1 122 GLU 122 240 240 GLU GLU C . n C 1 123 GLY 123 241 241 GLY GLY C . n C 1 124 SER 124 242 242 SER SER C . n C 1 125 ARG 125 243 243 ARG ARG C . n C 1 126 THR 126 244 244 THR THR C . n C 1 127 ALA 127 245 245 ALA ALA C . n C 1 128 LEU 128 246 246 LEU LEU C . n C 1 129 SER 129 247 247 SER SER C . n C 1 130 VAL 130 248 248 VAL VAL C . n C 1 131 VAL 131 249 249 VAL VAL C . n C 1 132 THR 132 250 250 THR THR C . n C 1 133 TRP 133 251 251 TRP TRP C . n C 1 134 ASN 134 252 252 ASN ASN C . n C 1 135 LYS 135 253 253 LYS LYS C . n C 1 136 ASP 136 254 254 ASP ASP C . n C 1 137 MET 137 255 255 MET MET C . n C 1 138 VAL 138 256 256 VAL VAL C . n C 1 139 THR 139 257 257 THR THR C . n C 1 140 ARG 140 258 258 ARG ARG C . n C 1 141 VAL 141 259 259 VAL VAL C . n C 1 142 THR 142 260 260 THR THR C . n C 1 143 PRO 143 261 261 PRO PRO C . n C 1 144 GLU 144 262 262 GLU GLU C . n C 1 145 GLY 145 263 263 GLY GLY C . n C 1 146 SER 146 264 264 SER SER C . n C 1 147 GLU 147 265 265 GLU GLU C . n C 1 148 GLU 148 266 266 GLU GLU C . n C 1 149 TRP 149 267 267 TRP TRP C . n D 1 1 CYS 1 119 119 CYS CYS D . n D 1 2 ILE 2 120 120 ILE ILE D . n D 1 3 PHE 3 121 121 PHE PHE D . n D 1 4 GLU 4 122 122 GLU GLU D . n D 1 5 VAL 5 123 123 VAL VAL D . n D 1 6 LYS 6 124 124 LYS LYS D . n D 1 7 HIS 7 125 125 HIS HIS D . n D 1 8 GLU 8 126 126 GLU GLU D . n D 1 9 GLY 9 127 127 GLY GLY D . n D 1 10 LYS 10 128 128 LYS LYS D . n D 1 11 VAL 11 129 129 VAL VAL D . n D 1 12 THR 12 130 130 THR THR D . n D 1 13 GLY 13 131 131 GLY GLY D . n D 1 14 TYR 14 132 132 TYR TYR D . n D 1 15 ALA 15 133 133 ALA ALA D . n D 1 16 CYS 16 134 134 CYS CYS D . n D 1 17 LEU 17 135 135 LEU LEU D . n D 1 18 VAL 18 136 136 VAL VAL D . n D 1 19 GLY 19 137 137 GLY GLY D . n D 1 20 ASP 20 138 138 ASP ASP D . n D 1 21 LYS 21 139 139 LYS LYS D . n D 1 22 VAL 22 140 140 VAL VAL D . n D 1 23 MET 23 141 141 MET MET D . n D 1 24 LYS 24 142 142 LYS LYS D . n D 1 25 PRO 25 143 143 PRO PRO D . n D 1 26 ALA 26 144 144 ALA ALA D . n D 1 27 HIS 27 145 145 HIS HIS D . n D 1 28 VAL 28 146 146 VAL VAL D . n D 1 29 LYS 29 147 147 LYS LYS D . n D 1 30 GLY 30 148 148 GLY GLY D . n D 1 31 VAL 31 149 149 VAL VAL D . n D 1 32 ILE 32 150 150 ILE ILE D . n D 1 33 ASP 33 151 151 ASP ASP D . n D 1 34 ASN 34 152 152 ASN ASN D . n D 1 35 ALA 35 153 153 ALA ALA D . n D 1 36 ASP 36 154 154 ASP ASP D . n D 1 37 LEU 37 155 155 LEU LEU D . n D 1 38 ALA 38 156 156 ALA ALA D . n D 1 39 LYS 39 157 157 LYS LYS D . n D 1 40 LEU 40 158 158 LEU LEU D . n D 1 41 ALA 41 159 159 ALA ALA D . n D 1 42 PHE 42 160 160 PHE PHE D . n D 1 43 LYS 43 161 161 LYS LYS D . n D 1 44 LYS 44 162 162 LYS LYS D . n D 1 45 SER 45 163 163 SER SER D . n D 1 46 SER 46 164 164 SER SER D . n D 1 47 LYS 47 165 165 LYS LYS D . n D 1 48 TYR 48 166 166 TYR TYR D . n D 1 49 ASP 49 167 167 ASP ASP D . n D 1 50 LEU 50 168 168 LEU LEU D . n D 1 51 GLU 51 169 169 GLU GLU D . n D 1 52 CYS 52 170 170 CYS CYS D . n D 1 53 ALA 53 171 171 ALA ALA D . n D 1 54 GLN 54 172 172 GLN GLN D . n D 1 55 ILE 55 173 173 ILE ILE D . n D 1 56 PRO 56 174 174 PRO PRO D . n D 1 57 VAL 57 175 175 VAL VAL D . n D 1 58 HIS 58 176 176 HIS HIS D . n D 1 59 MET 59 177 177 MET MET D . n D 1 60 ARG 60 178 178 ARG ARG D . n D 1 61 SER 61 179 179 SER SER D . n D 1 62 ASP 62 180 180 ASP ASP D . n D 1 63 ALA 63 181 181 ALA ALA D . n D 1 64 SER 64 182 182 SER SER D . n D 1 65 LYS 65 183 183 LYS LYS D . n D 1 66 TYR 66 184 184 TYR TYR D . n D 1 67 THR 67 185 185 THR THR D . n D 1 68 HIS 68 186 186 HIS HIS D . n D 1 69 GLU 69 187 187 GLU GLU D . n D 1 70 LYS 70 188 188 LYS LYS D . n D 1 71 PRO 71 189 189 PRO PRO D . n D 1 72 GLU 72 190 190 GLU GLU D . n D 1 73 GLY 73 191 191 GLY GLY D . n D 1 74 HIS 74 192 192 HIS HIS D . n D 1 75 TYR 75 193 193 TYR TYR D . n D 1 76 ASN 76 194 194 ASN ASN D . n D 1 77 TRP 77 195 195 TRP TRP D . n D 1 78 HIS 78 196 196 HIS HIS D . n D 1 79 HIS 79 197 197 HIS HIS D . n D 1 80 GLY 80 198 198 GLY GLY D . n D 1 81 ALA 81 199 199 ALA ALA D . n D 1 82 VAL 82 200 200 VAL VAL D . n D 1 83 GLN 83 201 201 GLN GLN D . n D 1 84 TYR 84 202 202 TYR TYR D . n D 1 85 SER 85 203 203 SER SER D . n D 1 86 GLY 86 204 204 GLY GLY D . n D 1 87 GLY 87 205 205 GLY GLY D . n D 1 88 ARG 88 206 206 ARG ARG D . n D 1 89 PHE 89 207 207 PHE PHE D . n D 1 90 THR 90 208 208 THR THR D . n D 1 91 ILE 91 209 209 ILE ILE D . n D 1 92 PRO 92 210 210 PRO PRO D . n D 1 93 THR 93 211 211 THR THR D . n D 1 94 GLY 94 212 212 GLY GLY D . n D 1 95 ALA 95 213 213 ALA ALA D . n D 1 96 GLY 96 214 214 GLY GLY D . n D 1 97 LYS 97 215 215 LYS LYS D . n D 1 98 PRO 98 216 216 PRO PRO D . n D 1 99 GLY 99 217 217 GLY GLY D . n D 1 100 ASP 100 218 218 ASP ASP D . n D 1 101 SER 101 219 219 SER SER D . n D 1 102 GLY 102 220 220 GLY GLY D . n D 1 103 ARG 103 221 221 ARG ARG D . n D 1 104 PRO 104 222 222 PRO PRO D . n D 1 105 ILE 105 223 223 ILE ILE D . n D 1 106 PHE 106 224 224 PHE PHE D . n D 1 107 ASP 107 225 225 ASP ASP D . n D 1 108 ASN 108 226 226 ASN ASN D . n D 1 109 LYS 109 227 227 LYS LYS D . n D 1 110 GLY 110 228 228 GLY GLY D . n D 1 111 ARG 111 229 229 ARG ARG D . n D 1 112 VAL 112 230 230 VAL VAL D . n D 1 113 VAL 113 231 231 VAL VAL D . n D 1 114 ALA 114 232 232 ALA ALA D . n D 1 115 ILE 115 233 233 ILE ILE D . n D 1 116 VAL 116 234 234 VAL VAL D . n D 1 117 LEU 117 235 235 LEU LEU D . n D 1 118 GLY 118 236 236 GLY GLY D . n D 1 119 GLY 119 237 237 GLY GLY D . n D 1 120 ALA 120 238 238 ALA ALA D . n D 1 121 ASN 121 239 239 ASN ASN D . n D 1 122 GLU 122 240 240 GLU GLU D . n D 1 123 GLY 123 241 241 GLY GLY D . n D 1 124 SER 124 242 242 SER SER D . n D 1 125 ARG 125 243 243 ARG ARG D . n D 1 126 THR 126 244 244 THR THR D . n D 1 127 ALA 127 245 245 ALA ALA D . n D 1 128 LEU 128 246 246 LEU LEU D . n D 1 129 SER 129 247 247 SER SER D . n D 1 130 VAL 130 248 248 VAL VAL D . n D 1 131 VAL 131 249 249 VAL VAL D . n D 1 132 THR 132 250 250 THR THR D . n D 1 133 TRP 133 251 251 TRP TRP D . n D 1 134 ASN 134 252 252 ASN ASN D . n D 1 135 LYS 135 253 253 LYS LYS D . n D 1 136 ASP 136 254 254 ASP ASP D . n D 1 137 MET 137 255 255 MET MET D . n D 1 138 VAL 138 256 256 VAL VAL D . n D 1 139 THR 139 257 257 THR THR D . n D 1 140 ARG 140 258 258 ARG ARG D . n D 1 141 VAL 141 259 259 VAL VAL D . n D 1 142 THR 142 260 260 THR THR D . n D 1 143 PRO 143 261 261 PRO PRO D . n D 1 144 GLU 144 262 262 GLU GLU D . n D 1 145 GLY 145 263 263 GLY GLY D . n D 1 146 SER 146 264 264 SER SER D . n D 1 147 GLU 147 265 265 GLU GLU D . n D 1 148 GLU 148 266 266 GLU GLU D . n D 1 149 TRP 149 267 267 TRP TRP D . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 240-MERIC 240 2 'icosahedral asymmetric unit' ? tetrameric 4 3 'icosahedral pentamer' ? eicosameric 20 4 'icosahedral 23 hexamer' ? 24-meric 24 5 'icosahedral asymmetric unit, std point frame' ? tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A,B,C,D 2 1 A,B,C,D 3 '(1-5)' A,B,C,D 4 '(1,2,6,10,23,24)' A,B,C,D 5 P A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.00000000 -1.00000000 0.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -0.00000 1 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.50000000 -0.80901699 0.30901699 0.00000 0.80901699 0.30901699 -0.50000000 0.00000 0.30901699 0.50000000 0.80901699 0.00000 3 'point symmetry operation' ? ? -0.30901699 -0.50000000 0.80901699 0.00000 0.50000000 -0.80901699 -0.30901699 0.00000 0.80901699 0.30901699 0.50000000 0.00000 4 'point symmetry operation' ? ? -0.30901699 0.50000000 0.80901699 0.00000 -0.50000000 -0.80901699 0.30901699 0.00000 0.80901699 -0.30901699 0.50000000 0.00000 5 'point symmetry operation' ? ? 0.50000000 0.80901699 0.30901699 0.00000 -0.80901699 0.30901699 0.50000000 0.00000 0.30901699 -0.50000000 0.80901699 0.00000 6 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 7 'point symmetry operation' ? ? -0.50000000 0.80901699 -0.30901699 0.00000 -0.80901699 -0.30901699 0.50000000 0.00000 0.30901699 0.50000000 0.80901699 0.00000 8 'point symmetry operation' ? ? 0.30901699 0.50000000 -0.80901699 0.00000 -0.50000000 0.80901699 0.30901699 0.00000 0.80901699 0.30901699 0.50000000 0.00000 9 'point symmetry operation' ? ? 0.30901699 -0.50000000 -0.80901699 0.00000 0.50000000 0.80901699 -0.30901699 0.00000 0.80901699 -0.30901699 0.50000000 0.00000 10 'point symmetry operation' ? ? -0.50000000 -0.80901699 -0.30901699 0.00000 0.80901699 -0.30901699 -0.50000000 0.00000 0.30901699 -0.50000000 0.80901699 0.00000 11 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 12 'point symmetry operation' ? ? 0.50000000 -0.80901699 0.30901699 0.00000 -0.80901699 -0.30901699 0.50000000 0.00000 -0.30901699 -0.50000000 -0.80901699 0.00000 13 'point symmetry operation' ? ? -0.30901699 -0.50000000 0.80901699 0.00000 -0.50000000 0.80901699 0.30901699 0.00000 -0.80901699 -0.30901699 -0.50000000 0.00000 14 'point symmetry operation' ? ? -0.30901699 0.50000000 0.80901699 0.00000 0.50000000 0.80901699 -0.30901699 0.00000 -0.80901699 0.30901699 -0.50000000 0.00000 15 'point symmetry operation' ? ? 0.50000000 0.80901699 0.30901699 0.00000 0.80901699 -0.30901699 -0.50000000 0.00000 -0.30901699 0.50000000 -0.80901699 0.00000 16 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 17 'point symmetry operation' ? ? -0.50000000 0.80901699 -0.30901699 0.00000 0.80901699 0.30901699 -0.50000000 0.00000 -0.30901699 -0.50000000 -0.80901699 0.00000 18 'point symmetry operation' ? ? 0.30901699 0.50000000 -0.80901699 0.00000 0.50000000 -0.80901699 -0.30901699 0.00000 -0.80901699 -0.30901699 -0.50000000 0.00000 19 'point symmetry operation' ? ? 0.30901699 -0.50000000 -0.80901699 0.00000 -0.50000000 -0.80901699 0.30901699 0.00000 -0.80901699 0.30901699 -0.50000000 0.00000 20 'point symmetry operation' ? ? -0.50000000 -0.80901699 -0.30901699 0.00000 -0.80901699 0.30901699 0.50000000 0.00000 -0.30901699 0.50000000 -0.80901699 0.00000 21 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 22 'point symmetry operation' ? ? -0.80901699 -0.30901699 0.50000000 0.00000 -0.30901699 -0.50000000 -0.80901699 0.00000 0.50000000 -0.80901699 0.30901699 0.00000 23 'point symmetry operation' ? ? -0.50000000 0.80901699 0.30901699 0.00000 -0.80901699 -0.30901699 -0.50000000 0.00000 -0.30901699 -0.50000000 0.80901699 0.00000 24 'point symmetry operation' ? ? 0.50000000 0.80901699 -0.30901699 0.00000 -0.80901699 0.30901699 -0.50000000 0.00000 -0.30901699 0.50000000 0.80901699 0.00000 25 'point symmetry operation' ? ? 0.80901699 -0.30901699 -0.50000000 0.00000 -0.30901699 0.50000000 -0.80901699 0.00000 0.50000000 0.80901699 0.30901699 0.00000 26 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 27 'point symmetry operation' ? ? 0.80901699 0.30901699 -0.50000000 0.00000 -0.30901699 -0.50000000 -0.80901699 0.00000 -0.50000000 0.80901699 -0.30901699 0.00000 28 'point symmetry operation' ? ? 0.50000000 -0.80901699 -0.30901699 0.00000 -0.80901699 -0.30901699 -0.50000000 0.00000 0.30901699 0.50000000 -0.80901699 0.00000 29 'point symmetry operation' ? ? -0.50000000 -0.80901699 0.30901699 0.00000 -0.80901699 0.30901699 -0.50000000 0.00000 0.30901699 -0.50000000 -0.80901699 0.00000 30 'point symmetry operation' ? ? -0.80901699 0.30901699 0.50000000 0.00000 -0.30901699 0.50000000 -0.80901699 0.00000 -0.50000000 -0.80901699 -0.30901699 0.00000 31 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 32 'point symmetry operation' ? ? 0.80901699 0.30901699 -0.50000000 0.00000 0.30901699 0.50000000 0.80901699 0.00000 0.50000000 -0.80901699 0.30901699 0.00000 33 'point symmetry operation' ? ? 0.50000000 -0.80901699 -0.30901699 0.00000 0.80901699 0.30901699 0.50000000 0.00000 -0.30901699 -0.50000000 0.80901699 0.00000 34 'point symmetry operation' ? ? -0.50000000 -0.80901699 0.30901699 0.00000 0.80901699 -0.30901699 0.50000000 0.00000 -0.30901699 0.50000000 0.80901699 0.00000 35 'point symmetry operation' ? ? -0.80901699 0.30901699 0.50000000 0.00000 0.30901699 -0.50000000 0.80901699 0.00000 0.50000000 0.80901699 0.30901699 0.00000 36 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 37 'point symmetry operation' ? ? -0.80901699 -0.30901699 0.50000000 0.00000 0.30901699 0.50000000 0.80901699 0.00000 -0.50000000 0.80901699 -0.30901699 0.00000 38 'point symmetry operation' ? ? -0.50000000 0.80901699 0.30901699 0.00000 0.80901699 0.30901699 0.50000000 0.00000 0.30901699 0.50000000 -0.80901699 0.00000 39 'point symmetry operation' ? ? 0.50000000 0.80901699 -0.30901699 0.00000 0.80901699 -0.30901699 0.50000000 0.00000 0.30901699 -0.50000000 -0.80901699 0.00000 40 'point symmetry operation' ? ? 0.80901699 -0.30901699 -0.50000000 0.00000 0.30901699 -0.50000000 0.80901699 0.00000 -0.50000000 -0.80901699 -0.30901699 0.00000 41 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 42 'point symmetry operation' ? ? 0.30901699 0.50000000 0.80901699 0.00000 -0.50000000 0.80901699 -0.30901699 0.00000 -0.80901699 -0.30901699 0.50000000 0.00000 43 'point symmetry operation' ? ? 0.80901699 0.30901699 0.50000000 0.00000 0.30901699 0.50000000 -0.80901699 0.00000 -0.50000000 0.80901699 0.30901699 0.00000 44 'point symmetry operation' ? ? 0.80901699 -0.30901699 0.50000000 0.00000 0.30901699 -0.50000000 -0.80901699 0.00000 0.50000000 0.80901699 -0.30901699 0.00000 45 'point symmetry operation' ? ? 0.30901699 -0.50000000 0.80901699 0.00000 -0.50000000 -0.80901699 -0.30901699 0.00000 0.80901699 -0.30901699 -0.50000000 0.00000 46 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 47 'point symmetry operation' ? ? 0.30901699 0.50000000 0.80901699 0.00000 0.50000000 -0.80901699 0.30901699 0.00000 0.80901699 0.30901699 -0.50000000 0.00000 48 'point symmetry operation' ? ? 0.80901699 0.30901699 0.50000000 0.00000 -0.30901699 -0.50000000 0.80901699 0.00000 0.50000000 -0.80901699 -0.30901699 0.00000 49 'point symmetry operation' ? ? 0.80901699 -0.30901699 0.50000000 0.00000 -0.30901699 0.50000000 0.80901699 0.00000 -0.50000000 -0.80901699 0.30901699 0.00000 50 'point symmetry operation' ? ? 0.30901699 -0.50000000 0.80901699 0.00000 0.50000000 0.80901699 0.30901699 0.00000 -0.80901699 0.30901699 0.50000000 0.00000 51 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 52 'point symmetry operation' ? ? -0.30901699 -0.50000000 -0.80901699 0.00000 -0.50000000 0.80901699 -0.30901699 0.00000 0.80901699 0.30901699 -0.50000000 0.00000 53 'point symmetry operation' ? ? -0.80901699 -0.30901699 -0.50000000 0.00000 0.30901699 0.50000000 -0.80901699 0.00000 0.50000000 -0.80901699 -0.30901699 0.00000 54 'point symmetry operation' ? ? -0.80901699 0.30901699 -0.50000000 0.00000 0.30901699 -0.50000000 -0.80901699 0.00000 -0.50000000 -0.80901699 0.30901699 0.00000 55 'point symmetry operation' ? ? -0.30901699 0.50000000 -0.80901699 0.00000 -0.50000000 -0.80901699 -0.30901699 0.00000 -0.80901699 0.30901699 0.50000000 0.00000 56 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 57 'point symmetry operation' ? ? -0.30901699 -0.50000000 -0.80901699 0.00000 0.50000000 -0.80901699 0.30901699 0.00000 -0.80901699 -0.30901699 0.50000000 0.00000 58 'point symmetry operation' ? ? -0.80901699 -0.30901699 -0.50000000 0.00000 -0.30901699 -0.50000000 0.80901699 0.00000 -0.50000000 0.80901699 0.30901699 0.00000 59 'point symmetry operation' ? ? -0.80901699 0.30901699 -0.50000000 0.00000 -0.30901699 0.50000000 0.80901699 0.00000 0.50000000 0.80901699 -0.30901699 0.00000 60 'point symmetry operation' ? ? -0.30901699 0.50000000 -0.80901699 0.00000 0.50000000 0.80901699 0.30901699 0.00000 0.80901699 -0.30901699 -0.50000000 0.00000 # _pdbx_point_symmetry.entry_id 1DYL _pdbx_point_symmetry.Schoenflies_symbol I # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-08-18 2 'Structure model' 1 1 2011-05-07 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-08-30 5 'Structure model' 1 4 2018-01-31 6 'Structure model' 1 5 2019-12-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Experimental preparation' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Data processing' 7 5 'Structure model' Other 8 6 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' em_3d_fitting 2 4 'Structure model' em_sample_support 3 4 'Structure model' em_software 4 5 'Structure model' cell 5 5 'Structure model' em_software 6 6 'Structure model' atom_sites # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_em_3d_fitting.target_criteria' 2 4 'Structure model' '_em_sample_support.grid_material' 3 4 'Structure model' '_em_sample_support.grid_mesh_size' 4 4 'Structure model' '_em_software.fitting_id' 5 4 'Structure model' '_em_software.image_processing_id' 6 4 'Structure model' '_em_software.name' 7 5 'Structure model' '_cell.Z_PDB' 8 5 'Structure model' '_cell.length_a' 9 5 'Structure model' '_cell.length_b' 10 5 'Structure model' '_cell.length_c' 11 5 'Structure model' '_em_software.details' 12 5 'Structure model' '_em_software.name' 13 6 'Structure model' '_atom_sites.fract_transf_matrix[1][1]' 14 6 'Structure model' '_atom_sites.fract_transf_matrix[2][2]' 15 6 'Structure model' '_atom_sites.fract_transf_matrix[3][3]' # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS [A,B,C,D]C IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # _pdbx_entry_details.entry_id 1DYL _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE STRUCTURE STUDIED IS FOR THE COMPLETE VIRUS. THE FOLLOWING RESIDUES AND CHAINS ARE NOT REPORTED IN THIS ENTRY: MET A 1 TO ASP A 118 SER A 268 TO ARG A 1253 MET B 1 TO ASP B 118 SER B 268 TO ARG B 1253 MET C 1 TO ASP C 118 SER C 268 TO ARG C 1253 MET D 1 TO ASP D 118 SER D 268 TO ARG D 1253 AND CHAINS FOR THE SPIKE GLYCOPROTEINS E3, E2 AND E1 ; # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 1DYL _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria R-factor _em_3d_fitting.details ;METHOD--THE CRYSTAL STRUCTURE OF THE CAPSID PROTEIN FROM CHOI ET AL (1997) PROTEINS 3 27,345-359 (SUBUNIT A OF PDB FILE 1VCQ) WAS PLACED INTO THE CRYO-EM DENSITY MAP. THE CAPSID PROTEIN WAS FIRST MANUALLY POSITIONED INTO THE CRYO-EM DENSITY CORRESPONDING TO POSITIONS OF THE FOUR INDEPENDENT MONOMER DENSITIES BETWEEN THE INNER LEAFLET OF THE BILAYER AND THE RNA. THESE POSITIONS WERE THEN REFINED BY RIGID BODY REFINEMENT IN REAL SPACE WITH THE PROGRAM EMFIT (CHENG ET AL. 1995, CELL 80, 621-630). THE QUALITY OF THE FIT CAN BE SEEN FROM THE MAP DENSITY WITHIN THE PROTEIN. ALL 4563 ATOMS ARE IN DENSITY OF AT LEAST 4 SIGMA (96.73) ABOVE THE AVERAGE (512.04) , 1167 ATOMS ARE IN DENSITY BETWEEN 4 AND 5 SIGMA, 3174 ATOMS ARE IN DENSITY BETWEEN 5 AND 6 SIGMA, AND 222 ATOMS ARE IN DENSTY OF 6 SIGMA OR ABOVE. THE VARIATION IN DENSITY OVER THE FITTED PROTEIN CAN BE VISUALIZED WITH THE PSEUDO TEMPERATURE FACTOR. THE DENSITY VALUE AT EACH ATOM IS GIVEN IN THE 8TH COLUM (USUALLY THE OCCUPANCY) AS THE NUMBER OF STANDARD DEVIATION ABOVE BACKGROUND. COLUMN NINE (USUALLY THE TEMPERATURE FACTOR) CONTAINS THE VALUE OF THE RELATIVE DENSITY WITHIN THE FITTED PROTEIN SCALED LINEARLY SO THAT THE MINIMUM DENSITY IS 100.0 AND THE MAXIMUM DENSITY IS 1.0. THE ATOMS THAT LIE IN THE LOWER DENSITY REGIONS WILL HAVE THE HIGHEST PSEUDO TEMPERATURE FACTORS. REFINEMENT PROTOCOL--RIGID BODY REFINEMENT ; _em_3d_fitting.method ? # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 1DYL _em_3d_fitting_list.pdb_chain_id ? # _em_3d_reconstruction.entry_id 1DYL _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.num_particles 5267 _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method ;MODEL-BASED, POLAR-FOURIER- TRANSFORMATION (FULLER ET AL. 1996, J.STRUC.BIOL. 116, 48-55; BAKER AND CHENG 1996, J.STRUC.BIOL. 116, 120- 130) MODEL-BASED CROSS COMMOM LINES SEARCH AND REFINEMENT (CROWTHER ET AL. 1970, NATURE (LONDON) 226, 421- 425; FULLER ET AL. 1996, J.STRUC.BIOL. 11 48-55;FERLENGHI ET AL. 1998, J.MOL.BIOL. 283, 71-81) ; _em_3d_reconstruction.nominal_pixel_size 2.640 _em_3d_reconstruction.actual_pixel_size 2.520 _em_3d_reconstruction.resolution 9.000 _em_3d_reconstruction.magnification_calibration ;THE PIXEL SIZE OF THE CRYO-EM MAP WAS CALIBRATED AGAINST A LOW RESOLUTION DENSITY MAP CALCULATED FROM THE CRYSTAL STRUCTURE OF HRV16. DENSITIES WERE COMPARED BY CROSS- CORRELATION WITHIN A SPHERICAL SHELL OF INTERNAL RADIUS 110 ANGSTROMS AND EXTERNAL RADIUS OF 145 ANGSTROMS. ; _em_3d_reconstruction.details ;THE ORIENTATIONS WERE REFINED BY THE CROSS COMMON LINES LINES METHOD (SIMPLEX) AND THE POLAR FOURIER TRANSFORM METHOD USING A PARALLEL IMPLEMENTATION (PYPFT). THE EFFECTIVE RESOLUTION OF THE FINAL RECONSTRUCTED DENSITY WAS DETERMINED TO BE AT LEAST 9 ANGSTROMS, AS MEASURED BY RANDOMLY SPLITTING THE PARTICLES INTO TWO SETS AND CALCULATING THE FOURIER SHELL CORRELATION OBTAINED FROM SEPARATE RECONSTRUCTIONS (HARAUZ AND VAN HEEL 1986, OPTIK 73, 146-156). THE EIGENVALUE SPECTRUM GAVE AN INDICATION OF THE RANDOMNESS OF THE DATA THAT WAS INCLUDED IN THE RECONSTRUCTION. THE COMPLETENESS OF THE DATA WAS VERIFIED IN THAT ALL EIGENVALUES EXCEEDED 100. THE COORDINATES ARE IN THE P, Q, R FRAME IN ANGSTROM UNITS AND CORRESPOND TO ICOSAHEDRAL SYMMETRY AXES. THE ORIGIN IS CHOSEN AT THE CENTER OF THE VIRUS WITH P, Q AND R ALONG MUTUALLY PERPENDICULAR TWO-FOLD AXES OF THE ICOSAHEDRON. THEY SHOULD REMAIN IN THAT FRAME FOR THE EASE OF THE USER IN CREATING THE BIOLOGICALLY SIGNIFICANT VIRAL COMPLEX PARTICLE USING THE 60 ICOSAHEDRAL SYMMETRY OPERATORS. RESIDUES NOT VISIBLE IN THE ORIGINAL CRYSTAL STRUCTURES ARE NOT INCLUDED IN THE CRYO-EM STRUCTURE MODEL. FOR EXAMPLE, C RESIDUES 1-118, ARE NOT VISIBLE IN THE CRYSTAL STRUCTURE (PDB ENTRY 1VCQ) AND THEREFORE ARE NOT INCLUDED IN THE COORDINATES BELOW. ; _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.refinement_type ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.pH 7.6 _em_buffer.details ? # _em_entity_assembly.id 1 _em_entity_assembly.name 'SEMLIKI FOREST VIRUS' _em_entity_assembly.type VIRUS _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 1DYL _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 48 _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? # _em_imaging.entry_id 1DYL _em_imaging.id 1 _em_imaging.microscope_model 'FEI/PHILIPS CM200FEG' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode OTHER _em_imaging.specimen_id 1 _em_imaging.date 1998-06-15 _em_imaging.temperature 95 _em_imaging.nominal_defocus_min 975 _em_imaging.nominal_defocus_max 7600 _em_imaging.tilt_angle_min 0 _em_imaging.tilt_angle_max 0 _em_imaging.nominal_cs 2 _em_imaging.nominal_magnification 50000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type . _em_imaging.specimen_holder_model . _em_imaging.citation_id ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details '400 MESH COPPER, HOLEY CARBON, GLOW DISCHARGE,' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 400 _em_sample_support.grid_type ? # _em_vitrification.entry_id 1DYL _em_vitrification.id 1 _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.cryogen_name ETHANE _em_vitrification.specimen_id 1 _em_vitrification.details ;PLUNGE VITRIFICATION SAMPLES PREPARED AS THIN LAYERS OF VITREOUS ICE MAINTAINED AT NEAR LIQUID NITROGEN TEMPERATURE IN THE ELECTRON MICROSCOPE WITH A GATAN 626-0300 CRYOTRANSFER HOLDER. ; _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? _em_vitrification.chamber_temperature ? # _em_experiment.entry_id 1DYL _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # _em_single_particle_entity.entry_id 1DYL _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry I _em_single_particle_entity.image_processing_id 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CG B GLU 126 ? ? CB D LYS 188 ? ? 0.49 2 1 C B PRO 189 ? ? N C GLU 126 ? ? 0.51 3 1 O B HIS 125 ? ? CE1 D TYR 193 ? ? 0.62 4 1 CG2 B VAL 129 ? ? ND2 D ASN 194 ? ? 0.66 5 1 C B VAL 149 ? ? CE D LYS 227 ? ? 0.67 6 1 OE2 B GLU 126 ? ? O D LYS 188 ? ? 0.67 7 1 CB B ASP 151 ? ? O D LYS 227 ? ? 0.68 8 1 CG B LYS 124 ? ? C D ASP 225 ? ? 0.70 9 1 CB B ASP 151 ? ? C D LYS 227 ? ? 0.70 10 1 O B VAL 149 ? ? NZ D LYS 227 ? ? 0.75 11 1 ND1 B HIS 125 ? ? CD D PRO 189 ? ? 0.75 12 1 CG B LYS 128 ? ? N D TYR 193 ? ? 0.82 13 1 O B HIS 125 ? ? CZ D TYR 193 ? ? 0.86 14 1 CE1 B HIS 125 ? ? CD D PRO 189 ? ? 0.90 15 1 OD1 B ASP 151 ? ? N D ARG 229 ? ? 0.91 16 1 N B ILE 150 ? ? CD D LYS 227 ? ? 0.92 17 1 N B LYS 128 ? ? CD1 D TYR 193 ? ? 0.96 18 1 CG2 B VAL 149 ? ? NH2 D ARG 229 ? ? 0.96 19 1 C B GLY 191 ? ? CA C LYS 128 ? ? 0.96 20 1 CZ B TYR 193 ? ? CA C GLY 127 ? ? 0.97 21 1 CE2 B TYR 193 ? ? CA C GLY 127 ? ? 0.97 22 1 CA B GLY 191 ? ? CA C LYS 128 ? ? 0.98 23 1 CA B PRO 189 ? ? N C GLU 126 ? ? 0.99 24 1 CA B ASP 151 ? ? O D LYS 227 ? ? 1.05 25 1 CE1 B HIS 125 ? ? N D PRO 189 ? ? 1.05 26 1 C B GLU 190 ? ? O C HIS 125 ? ? 1.06 27 1 CG2 B VAL 149 ? ? CZ D ARG 229 ? ? 1.06 28 1 CA B ILE 150 ? ? CD D LYS 227 ? ? 1.08 29 1 C B PRO 189 ? ? C C HIS 125 ? ? 1.11 30 1 CG B LYS 124 ? ? O D ASP 225 ? ? 1.11 31 1 CG B GLU 126 ? ? CA D LYS 188 ? ? 1.12 32 1 N B GLY 191 ? ? CB C LYS 128 ? ? 1.15 33 1 N B GLU 190 ? ? C C HIS 125 ? ? 1.17 34 1 CG1 B VAL 129 ? ? CG D ASN 226 ? ? 1.20 35 1 CA B GLU 190 ? ? O C HIS 125 ? ? 1.21 36 1 CA B GLY 191 ? ? CB C LYS 128 ? ? 1.22 37 1 CB B LYS 124 ? ? CB D ASP 225 ? ? 1.22 38 1 OD2 B ASP 151 ? ? CA D GLY 228 ? ? 1.23 39 1 OE2 B GLU 126 ? ? C D LYS 188 ? ? 1.25 40 1 CE1 B HIS 125 ? ? CG D PRO 189 ? ? 1.27 41 1 CB B LYS 124 ? ? CG D ASP 225 ? ? 1.28 42 1 OH B TYR 193 ? ? N C GLY 127 ? ? 1.28 43 1 OE1 B GLU 126 ? ? CG D LYS 188 ? ? 1.29 44 1 NE2 B HIS 125 ? ? CA D PRO 189 ? ? 1.30 45 1 CD2 B TYR 202 ? ? O C GLU 126 ? ? 1.30 46 1 CA B GLY 191 ? ? C C LYS 128 ? ? 1.32 47 1 O B PRO 189 ? ? C C GLU 126 ? ? 1.32 48 1 CB B GLU 122 ? ? O D ASN 226 ? ? 1.32 49 1 ND1 B HIS 125 ? ? CG D PRO 189 ? ? 1.33 50 1 CB B VAL 149 ? ? NH2 D ARG 229 ? ? 1.34 51 1 C B PRO 189 ? ? CA C GLU 126 ? ? 1.34 52 1 NE2 B HIS 125 ? ? CB D PRO 189 ? ? 1.35 53 1 CD B GLU 126 ? ? CB D LYS 188 ? ? 1.36 54 1 O B VAL 149 ? ? CE D LYS 227 ? ? 1.37 55 1 C B VAL 149 ? ? NZ D LYS 227 ? ? 1.37 56 1 CG1 B VAL 129 ? ? OD1 D ASN 226 ? ? 1.38 57 1 N B ASP 151 ? ? CB D LYS 227 ? ? 1.39 58 1 CG B ASP 151 ? ? CA D GLY 228 ? ? 1.41 59 1 CD B GLU 126 ? ? CG D LYS 188 ? ? 1.41 60 1 CD B LYS 124 ? ? O D ASP 225 ? ? 1.45 61 1 C B HIS 125 ? ? CE1 D TYR 193 ? ? 1.46 62 1 N B TYR 202 ? ? CD C LYS 128 ? ? 1.46 63 1 CG B LYS 124 ? ? CA D ASP 225 ? ? 1.47 64 1 N B GLU 190 ? ? O C HIS 125 ? ? 1.47 65 1 O B GLY 191 ? ? CG C LYS 128 ? ? 1.48 66 1 NE2 B HIS 125 ? ? CG D PRO 189 ? ? 1.48 67 1 CB B VAL 129 ? ? OD1 D ASN 226 ? ? 1.49 68 1 CB B LYS 124 ? ? OD1 D ASP 225 ? ? 1.49 69 1 CA B VAL 129 ? ? OD1 D ASN 226 ? ? 1.49 70 1 O B PRO 189 ? ? N C GLY 127 ? ? 1.51 71 1 CA B LYS 128 ? ? CA D TYR 193 ? ? 1.52 72 1 O B GLY 191 ? ? CD C LYS 128 ? ? 1.52 73 1 N B LYS 128 ? ? CG D TYR 193 ? ? 1.52 74 1 CA B GLU 122 ? ? O D ASN 226 ? ? 1.52 75 1 CE1 B HIS 125 ? ? CA D PRO 189 ? ? 1.52 76 1 CB B LYS 128 ? ? CG D TYR 193 ? ? 1.52 77 1 O B GLY 127 ? ? O D PHE 224 ? ? 1.53 78 1 NE2 B HIS 125 ? ? C D PRO 189 ? ? 1.54 79 1 OH B TYR 193 ? ? CA C GLY 127 ? ? 1.54 80 1 N B ILE 150 ? ? CE D LYS 227 ? ? 1.54 81 1 C B GLU 122 ? ? O D ASN 226 ? ? 1.54 82 1 O B PRO 189 ? ? N C GLU 126 ? ? 1.56 83 1 O B PRO 189 ? ? CA C GLU 126 ? ? 1.57 84 1 CB B ASP 151 ? ? N D GLY 228 ? ? 1.57 85 1 O B GLU 190 ? ? O C HIS 125 ? ? 1.57 86 1 CE1 B HIS 125 ? ? CB D PRO 189 ? ? 1.59 87 1 C B VAL 149 ? ? CD D LYS 227 ? ? 1.59 88 1 N B GLU 190 ? ? N C GLU 126 ? ? 1.59 89 1 CA B ILE 150 ? ? CG D LYS 227 ? ? 1.59 90 1 O B GLU 122 ? ? CA D LYS 227 ? ? 1.60 91 1 OD1 B ASP 151 ? ? C D GLY 228 ? ? 1.61 92 1 CB B LYS 124 ? ? CA D ASP 225 ? ? 1.63 93 1 CG B HIS 125 ? ? CG D PRO 189 ? ? 1.63 94 1 C B VAL 129 ? ? OD1 D ASN 226 ? ? 1.63 95 1 CE2 B TYR 193 ? ? C C GLY 127 ? ? 1.63 96 1 CB B GLU 126 ? ? CB D LYS 188 ? ? 1.64 97 1 CA B VAL 149 ? ? CE D LYS 227 ? ? 1.64 98 1 N B GLY 127 ? ? CG2 D VAL 231 ? ? 1.64 99 1 CG2 B VAL 149 ? ? NH1 D ARG 229 ? ? 1.64 100 1 CG2 B VAL 129 ? ? CG D ASN 194 ? ? 1.68 101 1 CD B GLU 126 ? ? O D LYS 188 ? ? 1.68 102 1 CG1 B VAL 129 ? ? ND2 D ASN 226 ? ? 1.69 103 1 C B GLY 191 ? ? CB C LYS 128 ? ? 1.69 104 1 CA B LYS 128 ? ? CB D TYR 193 ? ? 1.69 105 1 CE B LYS 124 ? ? O D ASP 225 ? ? 1.70 106 1 NZ B LYS 128 ? ? C D TYR 193 ? ? 1.70 107 1 CD2 B HIS 125 ? ? CG D PRO 189 ? ? 1.70 108 1 CB B LYS 128 ? ? N D TYR 193 ? ? 1.70 109 1 CG B GLU 122 ? ? O D ASN 226 ? ? 1.72 110 1 CA B GLN 201 ? ? CE C LYS 128 ? ? 1.73 111 1 CA B LYS 128 ? ? CG D TYR 193 ? ? 1.73 112 1 O B HIS 125 ? ? OH D TYR 193 ? ? 1.73 113 1 CG B LYS 128 ? ? CA D TYR 193 ? ? 1.74 114 1 CA B LYS 124 ? ? CB D ASP 225 ? ? 1.74 115 1 CG B ASP 151 ? ? C D GLY 228 ? ? 1.75 116 1 O B PRO 189 ? ? C C HIS 125 ? ? 1.78 117 1 CG B LYS 128 ? ? C D HIS 192 ? ? 1.80 118 1 C B PRO 189 ? ? O C HIS 125 ? ? 1.81 119 1 C B HIS 125 ? ? OH D TYR 193 ? ? 1.81 120 1 CB B LYS 128 ? ? CA D TYR 193 ? ? 1.82 121 1 CD B GLU 126 ? ? CA D LYS 188 ? ? 1.82 122 1 N B HIS 192 ? ? CA C LYS 128 ? ? 1.82 123 1 OE1 B GLU 126 ? ? CD D LYS 188 ? ? 1.83 124 1 N B GLY 191 ? ? CA C LYS 128 ? ? 1.83 125 1 CB B LYS 124 ? ? C D ASP 225 ? ? 1.83 126 1 C B ASP 151 ? ? O D LYS 227 ? ? 1.83 127 1 C B HIS 125 ? ? CZ D TYR 193 ? ? 1.83 128 1 CG B ASP 151 ? ? O D LYS 227 ? ? 1.83 129 1 NE2 B HIS 125 ? ? O D PRO 189 ? ? 1.85 130 1 OD2 B ASP 151 ? ? C D GLY 228 ? ? 1.85 131 1 CA B LYS 128 ? ? CD1 D TYR 193 ? ? 1.85 132 1 O B GLY 191 ? ? CB C LYS 128 ? ? 1.86 133 1 NE2 B HIS 125 ? ? N D PRO 189 ? ? 1.87 134 1 CB B LYS 128 ? ? CD2 D TYR 193 ? ? 1.87 135 1 C B GLU 126 ? ? CG1 D VAL 231 ? ? 1.87 136 1 CA B PRO 189 ? ? CA C GLU 126 ? ? 1.88 137 1 CA B ASP 151 ? ? C D LYS 227 ? ? 1.88 138 1 O B VAL 200 ? ? NZ C LYS 128 ? ? 1.88 139 1 CG B ASP 151 ? ? N D GLY 228 ? ? 1.89 140 1 CA B GLY 191 ? ? O C LYS 128 ? ? 1.90 141 1 CG B GLU 126 ? ? CG D LYS 188 ? ? 1.90 142 1 O B PRO 189 ? ? O C HIS 125 ? ? 1.90 143 1 CG B LYS 124 ? ? N D ASN 226 ? ? 1.90 144 1 CE B LYS 128 ? ? CB D VAL 200 ? ? 1.91 145 1 O B HIS 125 ? ? CD1 D TYR 193 ? ? 1.91 146 1 CD B GLU 126 ? ? C D LYS 188 ? ? 1.91 147 1 CG B ASP 151 ? ? N D ARG 229 ? ? 1.92 148 1 CD B LYS 128 ? ? CB D TYR 193 ? ? 1.92 149 1 N B GLY 127 ? ? CB D VAL 231 ? ? 1.92 150 1 O B GLY 191 ? ? CA C LYS 128 ? ? 1.92 151 1 O B GLU 190 ? ? O C LYS 128 ? ? 1.92 152 1 CB B LYS 128 ? ? CB D TYR 193 ? ? 1.93 153 1 O B GLU 122 ? ? N D LYS 227 ? ? 1.93 154 1 N B TYR 202 ? ? CE C LYS 128 ? ? 1.93 155 1 NZ B LYS 128 ? ? O D TYR 193 ? ? 1.94 156 1 CB B LYS 128 ? ? C D HIS 192 ? ? 1.95 157 1 N B HIS 192 ? ? N C VAL 129 ? ? 1.95 158 1 C B LYS 124 ? ? CB D ASP 225 ? ? 1.95 159 1 CB B VAL 129 ? ? ND2 D ASN 194 ? ? 1.96 160 1 C B GLU 122 ? ? C D ASN 226 ? ? 1.96 161 1 O B GLU 190 ? ? C C HIS 125 ? ? 1.96 162 1 O B GLU 126 ? ? CG1 D VAL 231 ? ? 1.97 163 1 C B ILE 150 ? ? CB D LYS 227 ? ? 1.97 164 1 O B GLU 122 ? ? O D ASN 226 ? ? 1.98 165 1 CZ B TYR 193 ? ? N C GLY 127 ? ? 1.99 166 1 N B LYS 128 ? ? CB D TYR 193 ? ? 2.00 167 1 CA B VAL 149 ? ? NZ D LYS 227 ? ? 2.00 168 1 ND1 B HIS 125 ? ? N D PRO 189 ? ? 2.00 169 1 CD2 B HIS 125 ? ? O D PRO 189 ? ? 2.01 170 1 OE2 B GLU 126 ? ? CA D LYS 188 ? ? 2.01 171 1 OE1 B GLU 126 ? ? CB D LYS 188 ? ? 2.02 172 1 CB B PRO 189 ? ? N C GLU 126 ? ? 2.03 173 1 O B GLU 190 ? ? CA C HIS 125 ? ? 2.04 174 1 CA B GLU 190 ? ? C C HIS 125 ? ? 2.04 175 1 CA B LYS 124 ? ? N D ASN 226 ? ? 2.04 176 1 O B LYS 188 ? ? CA C GLU 126 ? ? 2.04 177 1 CG B ASP 151 ? ? C D LYS 227 ? ? 2.05 178 1 C B GLN 201 ? ? CE C LYS 128 ? ? 2.05 179 1 O B VAL 149 ? ? CD D LYS 227 ? ? 2.05 180 1 N B ASP 151 ? ? CA D LYS 227 ? ? 2.05 181 1 N B PRO 189 ? ? CA C GLU 126 ? ? 2.05 182 1 N B PRO 189 ? ? N C GLU 126 ? ? 2.06 183 1 CD2 B TYR 193 ? ? O C GLY 127 ? ? 2.06 184 1 CG B HIS 125 ? ? CD D PRO 189 ? ? 2.06 185 1 C B GLY 191 ? ? C C LYS 128 ? ? 2.07 186 1 O B GLU 190 ? ? N C HIS 125 ? ? 2.08 187 1 C B GLY 127 ? ? O D PHE 224 ? ? 2.08 188 1 CG B LYS 124 ? ? N D ASP 225 ? ? 2.08 189 1 N B VAL 149 ? ? NZ D LYS 227 ? ? 2.08 190 1 C B GLY 191 ? ? CG C LYS 128 ? ? 2.09 191 1 CG1 B VAL 149 ? ? NH2 D ARG 229 ? ? 2.10 192 1 O B HIS 125 ? ? CE2 D TYR 193 ? ? 2.10 193 1 CG B HIS 125 ? ? OH D TYR 193 ? ? 2.10 194 1 NE2 B HIS 125 ? ? CD D PRO 189 ? ? 2.10 195 1 O B GLU 122 ? ? C D ASN 226 ? ? 2.11 196 1 OD1 B ASP 151 ? ? CA D ARG 229 ? ? 2.11 197 1 O B GLY 191 ? ? NZ C LYS 128 ? ? 2.12 198 1 O B LYS 188 ? ? CG C GLU 126 ? ? 2.13 199 1 CD B LYS 124 ? ? C D ASP 225 ? ? 2.13 200 1 N B GLY 191 ? ? N C LYS 128 ? ? 2.13 201 1 CG B LYS 128 ? ? CB D TYR 193 ? ? 2.13 202 1 C B GLY 127 ? ? CD1 D TYR 193 ? ? 2.14 203 1 CD B LYS 124 ? ? N D ASP 225 ? ? 2.14 204 1 C B GLU 190 ? ? C C HIS 125 ? ? 2.14 205 1 N B THR 130 ? ? OD1 D ASN 226 ? ? 2.14 206 1 CA B HIS 192 ? ? NZ C LYS 128 ? ? 2.15 207 1 CB B ASP 151 ? ? CA D LYS 227 ? ? 2.15 208 1 O B ASP 151 ? ? O D LYS 227 ? ? 2.15 209 1 C B LYS 188 ? ? CA C GLU 126 ? ? 2.15 210 1 O B GLY 191 ? ? CE C LYS 128 ? ? 2.15 211 1 CA B GLY 191 ? ? N C LYS 128 ? ? 2.15 212 1 N B GLY 191 ? ? O C HIS 125 ? ? 2.16 213 1 C B PRO 189 ? ? C C GLU 126 ? ? 2.16 214 1 CD B LYS 128 ? ? O D VAL 200 ? ? 2.16 215 1 CA B PRO 189 ? ? C C HIS 125 ? ? 2.16 216 1 CB B LYS 128 ? ? O D HIS 192 ? ? 2.17 217 1 C B HIS 192 ? ? O C GLY 127 ? ? 2.17 218 1 CE2 B TYR 193 ? ? O C GLY 127 ? ? 2.17 219 1 N B ASP 151 ? ? O D LYS 227 ? ? 2.17 220 1 C B GLU 126 ? ? CG2 D VAL 231 ? ? 2.17 221 1 C B GLU 126 ? ? CB D VAL 231 ? ? 2.18 222 1 CD B LYS 128 ? ? N D TYR 193 ? ? 2.19 223 1 N B HIS 125 ? ? CB D ASP 225 ? ? 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A CYS 134 ? ? CB A CYS 134 ? ? SG A CYS 134 ? ? 121.35 114.20 7.15 1.10 N 2 1 CA B CYS 134 ? ? CB B CYS 134 ? ? SG B CYS 134 ? ? 121.32 114.20 7.12 1.10 N 3 1 CA C CYS 134 ? ? CB C CYS 134 ? ? SG C CYS 134 ? ? 121.32 114.20 7.12 1.10 N 4 1 CA D CYS 134 ? ? CB D CYS 134 ? ? SG D CYS 134 ? ? 121.31 114.20 7.11 1.10 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 151 ? ? -75.94 41.62 2 1 GLU A 169 ? ? -162.15 76.16 3 1 GLU A 187 ? ? -61.62 95.83 4 1 HIS A 197 ? ? -99.80 52.42 5 1 ASN A 252 ? ? -164.90 79.68 6 1 ASP B 151 ? ? -76.00 41.64 7 1 GLU B 169 ? ? -162.14 76.26 8 1 GLU B 187 ? ? -61.63 95.72 9 1 HIS B 197 ? ? -99.77 52.54 10 1 ASN B 252 ? ? -164.88 79.66 11 1 ASP C 151 ? ? -76.03 41.64 12 1 GLU C 169 ? ? -162.15 76.21 13 1 GLU C 187 ? ? -61.59 95.66 14 1 HIS C 197 ? ? -99.71 52.48 15 1 ASN C 252 ? ? -164.90 79.70 16 1 ASP D 151 ? ? -75.88 41.52 17 1 GLU D 169 ? ? -162.22 76.20 18 1 GLU D 187 ? ? -61.65 95.63 19 1 HIS D 197 ? ? -99.87 52.55 20 1 ASN D 252 ? ? -164.88 79.59 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id D _pdbx_unobs_or_zero_occ_atoms.auth_comp_id TRP _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 267 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id CH2 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id D _pdbx_unobs_or_zero_occ_atoms.label_comp_id TRP _pdbx_unobs_or_zero_occ_atoms.label_seq_id 149 _pdbx_unobs_or_zero_occ_atoms.label_atom_id CH2 # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.avg_electron_dose_per_image 10 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id _em_software.imaging_id _em_software.fitting_id 1 EMfit ? 'MODEL FITTING' ? ? ? 1 2 'MRC IMAGE PROCESSING PACKAGE' ? 'PARTICLE SELECTION' ? 1 ? ? 3 SPIDER ? 'PARTICLE SELECTION' ? 1 ? ? 4 ? ? RECONSTRUCTION 'PYPFT, SIMPLEX Procedure' 1 ? ? # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration ? _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? #